AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0181500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181500 MtrunA17_Chr1g0203081 97.446 979 25 0 1 979 1 979 0.0 1979
Msa0181500 MtrunA17_Chr6g0472281 69.535 709 181 9 1 691 1 692 0.0 976
Msa0181500 MtrunA17_Chr6g0472281 54.751 221 84 4 759 979 653 857 3.83e-58 215
Msa0181500 MtrunA17_Chr3g0143921 42.730 564 281 12 124 667 139 680 3.16e-136 431
Msa0181500 MtrunA17_Chr3g0143921 47.297 74 38 1 886 958 818 891 8.83e-13 72.8
Msa0181500 MtrunA17_Chr2g0329671 39.469 603 317 15 113 696 167 740 1.59e-118 386
Msa0181500 MtrunA17_Chr2g0329671 45.745 94 50 1 884 977 865 957 2.10e-17 87.8
Msa0181500 MtrunA17_Chr4g0033791 40.228 527 291 9 124 645 147 654 3.53e-114 373
Msa0181500 MtrunA17_Chr4g0033791 43.902 82 45 1 885 966 826 906 3.23e-15 80.5
Msa0181500 MtrunA17_Chr5g0448621 35.135 370 180 9 124 478 126 450 1.18e-55 209
Msa0181500 MtrunA17_Chr5g0448621 65.657 99 27 1 564 662 607 698 1.17e-31 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0181500 AT4G24020.1 54.803 989 336 23 36 979 36 958 0.0 951
Msa0181500 AT1G64530.1 60.057 706 243 15 29 704 5 701 0.0 818
Msa0181500 AT1G64530.1 56.436 101 41 2 880 979 738 836 1.33e-27 120
Msa0181500 AT4G24020.2 53.898 744 255 19 258 979 1 678 0.0 690
Msa0181500 AT1G64530.2 62.454 546 181 9 179 704 5 546 0.0 676
Msa0181500 AT1G64530.2 57.576 99 39 2 882 979 585 681 1.42e-27 120
Msa0181500 AT1G76350.2 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0181500 AT1G76350.2 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0181500 AT1G76350.1 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0181500 AT1G76350.1 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0181500 AT1G76350.4 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0181500 AT1G76350.4 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0181500 AT1G76350.3 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0181500 AT1G76350.3 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0181500 AT1G20640.1 42.124 565 299 8 120 668 101 653 1.88e-129 412
Msa0181500 AT1G20640.3 42.124 565 299 8 120 668 101 653 1.88e-129 412
Msa0181500 AT1G20640.2 42.124 565 299 8 120 668 101 653 1.88e-129 412
Msa0181500 AT2G17150.1 39.799 598 292 15 124 673 124 701 4.80e-123 397
Msa0181500 AT2G17150.1 43.023 86 45 2 867 951 798 880 5.47e-14 77.0
Msa0181500 AT2G17150.6 39.799 598 292 15 124 673 124 701 4.80e-123 397
Msa0181500 AT2G17150.6 43.023 86 45 2 867 951 798 880 5.47e-14 77.0
Msa0181500 AT3G59580.2 39.548 531 287 9 124 647 106 609 6.95e-116 377
Msa0181500 AT3G59580.2 41.837 98 54 3 883 978 792 888 1.07e-15 82.8
Msa0181500 AT3G59580.3 39.548 531 287 9 124 647 106 609 6.95e-116 377
Msa0181500 AT3G59580.3 41.837 98 54 3 883 978 792 888 1.07e-15 82.8
Msa0181500 AT3G59580.1 39.548 531 287 9 124 647 106 609 6.95e-116 377
Msa0181500 AT3G59580.1 41.837 98 54 3 883 978 792 888 1.07e-15 82.8
Msa0181500 AT2G43500.3 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.3 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.9 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.9 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.6 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.6 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.1 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.1 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.10 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.10 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.11 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.11 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.7 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.7 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.8 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0181500 AT2G43500.8 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0181500 AT2G43500.5 36.058 624 347 11 47 646 81 676 2.00e-112 369
Msa0181500 AT2G43500.5 42.708 96 54 1 883 978 847 941 1.39e-18 92.0
Msa0181500 AT2G43500.4 36.058 624 347 11 47 646 81 676 2.00e-112 369
Msa0181500 AT2G43500.4 42.708 96 54 1 883 978 847 941 1.39e-18 92.0
Msa0181500 AT2G43500.2 35.737 624 349 11 47 646 81 676 3.39e-111 366
Msa0181500 AT2G43500.2 42.708 96 54 1 883 978 847 941 1.30e-18 92.0
Msa0181500 AT4G38340.2 35.985 528 265 11 124 647 43 501 3.21e-94 314
Msa0181500 AT4G38340.2 36.735 98 56 2 870 964 592 686 2.70e-14 77.8
Msa0181500 AT4G38340.1 35.795 528 266 12 124 647 114 572 1.99e-93 313
Msa0181500 AT4G38340.1 36.735 98 56 2 870 964 663 757 2.97e-14 77.8
Msa0181500 AT2G17150.2 36.750 517 269 13 124 595 124 627 4.83e-93 309
Msa0181500 AT2G17150.5 36.923 520 267 14 124 595 124 630 1.28e-92 308
Msa0181500 AT2G17150.3 36.923 520 267 14 124 595 124 630 1.28e-92 308
Msa0181500 AT4G35270.2 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0181500 AT4G35270.2 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0181500 AT4G35270.2 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0181500 AT4G35270.1 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0181500 AT4G35270.1 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0181500 AT4G35270.1 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0181500 AT4G35270.3 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0181500 AT4G35270.3 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0181500 AT4G35270.3 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0181500 AT4G35270.4 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0181500 AT4G35270.4 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0181500 AT4G35270.4 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0181500 AT2G17150.4 36.511 493 237 15 257 702 3 466 9.57e-77 265
Msa0181500 AT2G17150.4 43.023 86 45 2 867 951 543 625 4.58e-14 77.0

Find 239 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCACCAATAGAAAATT+TGG 0.126044 1_4:-69730367 Msa0181500:CDS
ATATCGTAGATGCTCATTTA+TGG 0.198226 1_4:-69729138 Msa0181500:CDS
GTTCATTATGCTCTCATGTT+TGG 0.230421 1_4:-69728986 Msa0181500:CDS
TTCAGTAGCTGAGGCCATTT+TGG 0.234654 1_4:-69727395 Msa0181500:CDS
GAGAAGATATCATAAGGTTT+AGG 0.254091 1_4:-69727222 Msa0181500:CDS
CTGTTTCATTGTTGACAATA+TGG 0.260307 1_4:+69728841 None:intergenic
ACCCGATGCCTCACCAAATA+TGG 0.272048 1_4:-69728678 Msa0181500:CDS
AACCTCAAGTTTCAATCTTC+TGG 0.273224 1_4:+69727156 None:intergenic
ATTCATATGATAAAATAGTT+TGG 0.286584 1_4:-69726817 Msa0181500:three_prime_UTR
CTTGAGAAAGAAGTGATTAA+TGG 0.295335 1_4:-69727757 Msa0181500:CDS
TTCATTATGCTCTCATGTTT+GGG 0.297926 1_4:-69728985 Msa0181500:CDS
CTGTAGGCATAGGAGTGTTT+TGG 0.304108 1_4:-69729251 Msa0181500:CDS
TTTAGGTTCTTGTAATCTTT+AGG 0.307947 1_4:-69726917 Msa0181500:three_prime_UTR
AGAAGAACATGGTTGTTCTA+TGG 0.308360 1_4:-69731303 Msa0181500:CDS
CAGTTTGTTATCTATTGTTT+AGG 0.309599 1_4:-69726934 Msa0181500:three_prime_UTR
AATGAAGACTGTAACTATTA+AGG 0.320892 1_4:-69727254 Msa0181500:CDS
TGGTAAAGGCGTGACTATTC+AGG 0.321308 1_4:-69727737 Msa0181500:CDS
AAGTTGTTACCACAAGCTTC+TGG 0.322668 1_4:+69727361 None:intergenic
TATCGTAGATGCTCATTTAT+GGG 0.324285 1_4:-69729137 Msa0181500:CDS
GAATGTATTGGCTCAGGTTT+GGG 0.327805 1_4:-69730277 Msa0181500:CDS
CATTGCTGGCTGGACTTATT+CGG 0.328442 1_4:+69727904 None:intergenic
GGAAGCTCCTGTGAGAGTTC+AGG 0.336945 1_4:-69726983 Msa0181500:CDS
ATGATATCAATGCATTGTTT+AGG 0.337373 1_4:+69727313 None:intergenic
GCCTACAGGGAACCCATGTT+TGG 0.338019 1_4:+69729266 None:intergenic
AAGCAACATAATCCGGGTTT+TGG 0.339808 1_4:-69727029 Msa0181500:CDS
TTTCTCAAGGTTCTGTTTGT+GGG 0.342639 1_4:+69731386 None:intergenic
ATCAACCTTCTTCTCCTCTA+TGG 0.342830 1_4:-69731187 Msa0181500:CDS
GATTTAATAGATTGAGCAAT+AGG 0.344298 1_4:+69728710 None:intergenic
GTTTGTTTCTGATACTTTAG+AGG 0.346300 1_4:+69727828 None:intergenic
CACAACATGTTGTTCATTGT+TGG 0.348163 1_4:+69727579 None:intergenic
AGCATGTGATGCAGACCTTC+AGG 0.350853 1_4:-69727083 Msa0181500:CDS
TTTGGATTTCATCCAACATA+TGG 0.354659 1_4:+69726724 None:intergenic
GGCGTGACTATTCAGGAAAT+TGG 0.356009 1_4:-69727730 Msa0181500:CDS
TTTATGGTTGGAATTTCAAT+TGG 0.358415 1_4:+69727619 None:intergenic
AAATTGGAAAGGACCGAAAA+AGG 0.359121 1_4:-69727714 Msa0181500:CDS
GCTTGTGGTAACAACTTTCC+AGG 0.361722 1_4:-69727355 Msa0181500:CDS
AGAAGATATCATAAGGTTTA+GGG 0.363466 1_4:-69727221 Msa0181500:CDS
TATTGCTTAACGAGCATTGC+TGG 0.371298 1_4:+69727890 None:intergenic
CAGATACGCTTCATTGTAGT+AGG 0.378516 1_4:+69728102 None:intergenic
TTTAGAAACACCATGGCCTT+TGG 0.382797 1_4:-69731267 Msa0181500:CDS
TGAATGTATTGGCTCAGGTT+TGG 0.382919 1_4:-69730278 Msa0181500:CDS
GCAAAGGAAATGAAAACAAA+TGG 0.386296 1_4:+69731457 None:intergenic
TGGAGCCAGATCCTCCAAAA+TGG 0.387883 1_4:+69727381 None:intergenic
TAACACGTTTGAGCTTAGAT+AGG 0.389963 1_4:+69728022 None:intergenic
CTCCATATTTGGTGAGGCAT+CGG 0.392508 1_4:+69728676 None:intergenic
CGGTATGTACTTACAACTTC+AGG 0.393209 1_4:-69730234 Msa0181500:CDS
CTTGTAATCTTTAGGAAGAT+AGG 0.394367 1_4:-69726909 Msa0181500:three_prime_UTR
CAACATGGTCAAGGTGTTGC+GGG 0.395005 1_4:-69729082 Msa0181500:CDS
CCGGAGGAAGCAACATAATC+CGG 0.406793 1_4:-69727036 Msa0181500:CDS
TTATGGTTGGAATTTCAATT+GGG 0.410388 1_4:+69727620 None:intergenic
TTAGAATAGTACAGAACATT+GGG 0.411506 1_4:+69730063 None:intergenic
CTGGACTTATTCGGAGTAGA+AGG 0.413845 1_4:+69727913 None:intergenic
CTTTCCAGGTTCATCACATC+TGG 0.413983 1_4:-69727341 Msa0181500:CDS
GATGGAACTCTAGGACTTCC+TGG 0.418289 1_4:-69730120 Msa0181500:CDS
AAATATGGAGGAGGAGGAGG+AGG 0.419910 1_4:-69728663 Msa0181500:CDS
TGGTCAAGGTGTTGCGGGGA+GGG 0.420611 1_4:-69729077 Msa0181500:CDS
TGACATGGGATTGGTGATAA+AGG 0.425035 1_4:+69731235 None:intergenic
CCGGATTATGTTGCTTCCTC+CGG 0.426310 1_4:+69727036 None:intergenic
TAAATGAGCATCTACGATAT+AGG 0.426423 1_4:+69729141 None:intergenic
TTTGGTGAGGCATCGGGTCT+AGG 0.427870 1_4:+69728683 None:intergenic
GTTGATCCGATGTCTACCTT+AGG 0.428534 1_4:-69728590 Msa0181500:CDS
CCTTGCAGGCAGTAAATTTG+AGG 0.428965 1_4:-69729698 Msa0181500:intron
TCCATATTTGGTGAGGCATC+GGG 0.432185 1_4:+69728677 None:intergenic
GAAGCTCCTGTGAGAGTTCA+GGG 0.444633 1_4:-69726982 Msa0181500:CDS
GGATGGATATTGTGTAATCA+AGG 0.447561 1_4:-69730346 Msa0181500:CDS
GCAGAACTTCAAGAGCCGTT+TGG 0.448769 1_4:-69727472 Msa0181500:CDS
TCAGGAAATGAACTAACAAT+TGG 0.451708 1_4:+69727937 None:intergenic
CCACAGAAAACATGTACATC+AGG 0.453576 1_4:+69730154 None:intergenic
CAGAGTCTTAACATTGCTGC+TGG 0.455084 1_4:-69728812 Msa0181500:CDS
TTGTTGTCGTCTTTCTCCAC+CGG 0.456133 1_4:+69730408 None:intergenic
AAGTTCTGCTATCACATTGT+CGG 0.456387 1_4:+69727486 None:intergenic
AGGGCGTCAAAATGCATTAT+CGG 0.458489 1_4:-69729341 Msa0181500:CDS
ACCAAATATGGAGGAGGAGG+AGG 0.458759 1_4:-69728666 Msa0181500:CDS
TTGAGGGGATCGCCAGAGTC+GGG 0.458933 1_4:-69727556 Msa0181500:CDS
AGTTCTGCTATCACATTGTC+GGG 0.459703 1_4:+69727487 None:intergenic
CTGCAAGACAGATTACCCTT+TGG 0.463297 1_4:-69729008 Msa0181500:CDS
CACATTTGATATCAAGTACA+TGG 0.464870 1_4:-69727131 Msa0181500:CDS
GGAGGAGGAGGGAGTACCAC+AGG 0.466897 1_4:-69728651 Msa0181500:CDS
CATGACATAACATCAAATCT+TGG 0.469302 1_4:-69727004 Msa0181500:CDS
AGCAATGCTCGTTAAGCAAT+AGG 0.471004 1_4:-69727888 Msa0181500:CDS
GCGTTTGATTTGAATTCTCT+TGG 0.473199 1_4:-69727973 Msa0181500:CDS
CTCTTTGAACTGTGGCATTG+TGG 0.474442 1_4:-69727197 Msa0181500:CDS
TTAAATCAGATTTGCAATGA+AGG 0.476823 1_4:-69729361 Msa0181500:intron
CACCTGTGAGGAATGGTAAT+CGG 0.477678 1_4:-69730254 Msa0181500:CDS
CAAACGCTCCTTCAGCGCCT+TGG 0.478043 1_4:+69727989 None:intergenic
CATGAACAGAAGATGCTGTT+GGG 0.478576 1_4:-69728866 Msa0181500:CDS
ATTATTGAAGCAACTGATGA+AGG 0.480520 1_4:-69728758 Msa0181500:CDS
CCTTCGTTGCAGTCATGTAT+TGG 0.482068 1_4:-69729967 Msa0181500:CDS
GGAGAGAACGATGGAACTCT+AGG 0.486383 1_4:-69730129 Msa0181500:CDS
GTAATCTGTCTTGCAGAACT+TGG 0.486621 1_4:+69729015 None:intergenic
GGTGTTGAACTCGAGGAAAA+TGG 0.487027 1_4:-69728791 Msa0181500:CDS
AGAACATTGGGAGACCATTC+TGG 0.493005 1_4:+69730075 None:intergenic
TAAATCAGATTTGCAATGAA+GGG 0.493978 1_4:-69729360 Msa0181500:intron
GTCCTTGATCCACATAGTAA+TGG 0.494034 1_4:-69730201 Msa0181500:CDS
TTCAGCAGAAACTACCAGAA+TGG 0.494743 1_4:-69730089 Msa0181500:CDS
ATTAGAATAGTACAGAACAT+TGG 0.496307 1_4:+69730062 None:intergenic
CCTACAGGGAACCCATGTTT+GGG 0.498512 1_4:+69729267 None:intergenic
TGTAATGTTGAGCATGATCT+CGG 0.498840 1_4:+69730025 None:intergenic
TTTCCACGTTTCCTCTCTGA+GGG 0.500087 1_4:+69728548 None:intergenic
TGAACTGAATGTATTGGCTC+AGG 0.500170 1_4:-69730283 Msa0181500:CDS
ACATGGACGATGATAATGAA+TGG 0.500704 1_4:-69727114 Msa0181500:CDS
CATATAGAGAAGATATCATA+AGG 0.502450 1_4:-69727228 Msa0181500:CDS
CCACCAATAGAAAATTTGGA+TGG 0.502580 1_4:-69730363 Msa0181500:CDS
TTGAGCAATAGGAATAGATT+CGG 0.502794 1_4:+69728721 None:intergenic
AAAGTCCATAGAGGAGAAGA+AGG 0.508706 1_4:+69731182 None:intergenic
TGGCATGAACCATGAGAAGT+AGG 0.511685 1_4:+69727652 None:intergenic
AAAGAAGTGATTAATGGTAA+AGG 0.511717 1_4:-69727751 Msa0181500:CDS
ATGTATGTTTCGAGATCATC+CGG 0.512068 1_4:-69727055 Msa0181500:CDS
CAAAGGAAATGAAAACAAAT+GGG 0.512380 1_4:+69731458 None:intergenic
TTGATCCGATGTCTACCTTA+GGG 0.513112 1_4:-69728589 Msa0181500:CDS
TTACAACGTTCGTGGAACCT+TGG 0.514560 1_4:-69730007 Msa0181500:CDS
TCTTTCATCTGAGGCTCTGA+CGG 0.515877 1_4:+69727865 None:intergenic
TCATGAACAGAAGATGCTGT+TGG 0.516414 1_4:-69728867 Msa0181500:CDS
TGCAACGAAGGTTCAAATAC+AGG 0.517092 1_4:+69729979 None:intergenic
CAAAACACTCCTATGCCTAC+AGG 0.518113 1_4:+69729252 None:intergenic
CTATCACATTGTCGGGCATA+CGG 0.518485 1_4:+69727494 None:intergenic
GCTTAACGAGCATTGCTGGC+TGG 0.519778 1_4:+69727894 None:intergenic
TCGGGCATACGGTGAGAAGT+TGG 0.519816 1_4:+69727505 None:intergenic
ATTTACCTCTAGCCCAAACA+TGG 0.520347 1_4:-69729279 Msa0181500:CDS
GGAACCCATGTTTGGGCTAG+AGG 0.520691 1_4:+69729274 None:intergenic
AACAAACATACAGATTGTAA+TGG 0.521216 1_4:-69727812 Msa0181500:CDS
GAATTGTTCAGTCCATATGT+TGG 0.521476 1_4:-69726736 Msa0181500:three_prime_UTR
GTGTAGAACAATTTCAGCAA+AGG 0.522430 1_4:+69731441 None:intergenic
GATGCTGCAAAGAGCCTTGG+CGG 0.522654 1_4:-69728467 Msa0181500:intron
AATTCATTCTCTTTCATCTG+AGG 0.523018 1_4:+69727856 None:intergenic
CAGGATCCATCAGAGGTTCA+TGG 0.523226 1_4:-69728632 Msa0181500:CDS
GCTCAACATTACAACGTTCG+TGG 0.526984 1_4:-69730015 Msa0181500:CDS
CTATGTGGATCAAGGACAAA+GGG 0.527734 1_4:+69730207 None:intergenic
GTCGGCTGCATTCCCGACTC+TGG 0.528364 1_4:+69727544 None:intergenic
ATGTTGAGCATGATCTCGGC+GGG 0.529020 1_4:+69730029 None:intergenic
AAAGATGCTGCAAAGAGCCT+TGG 0.531341 1_4:-69728470 Msa0181500:CDS
CATGGACGATGATAATGAAT+GGG 0.531492 1_4:-69727113 Msa0181500:CDS
CGCTTCGTTACTTCAAAGAG+TGG 0.532079 1_4:-69730308 Msa0181500:CDS
GATTCAAAAGTGATAAAGCT+TGG 0.532650 1_4:+69731412 None:intergenic
ATATCAATGCATTGTTTAGG+AGG 0.537877 1_4:+69727316 None:intergenic
GAATCTGTCCAAGGCGCTGA+AGG 0.539465 1_4:-69727997 Msa0181500:CDS
AGCGTATCTGCAGGCAGCAT+GGG 0.541320 1_4:-69728089 Msa0181500:CDS
CCAATACATGACTGCAACGA+AGG 0.542039 1_4:+69729967 None:intergenic
GTCCATTACTATGTGGATCA+AGG 0.542097 1_4:+69730199 None:intergenic
CATGGGTTCCCTGTAGGCAT+AGG 0.542933 1_4:-69729261 Msa0181500:CDS
GAGGTTCATGGTGAAAATGT+AGG 0.543377 1_4:-69728620 Msa0181500:CDS
CTCACCAAATATGGAGGAGG+AGG 0.544347 1_4:-69728669 Msa0181500:CDS
TAAAAGAAACTCAACCTCTA+GGG 0.545210 1_4:+69729876 None:intergenic
AACACGTTTGAGCTTAGATA+GGG 0.545296 1_4:+69728023 None:intergenic
ATCGTAGATGCTCATTTATG+GGG 0.545393 1_4:-69729136 Msa0181500:CDS
CTACAATGAAGCGTATCTGC+AGG 0.545803 1_4:-69728098 Msa0181500:CDS
GAACTTCAAGAGCCGTTTGG+AGG 0.546170 1_4:-69727469 Msa0181500:CDS
GTTTGGAGGATTGCTAATAG+AGG 0.548683 1_4:-69727455 Msa0181500:CDS
GTGGACTGAACTGAATGTAT+TGG 0.548852 1_4:-69730289 Msa0181500:CDS
GGAGAGTTTAAAGCATTAGT+CGG 0.550784 1_4:+69727526 None:intergenic
ACAACATGGTCAAGGTGTTG+CGG 0.552963 1_4:-69729083 Msa0181500:CDS
GTAATGGAAAATCAATTGCT+AGG 0.555652 1_4:-69727796 Msa0181500:CDS
AGAAGATTGAAACTTGAGGT+TGG 0.556154 1_4:-69727154 Msa0181500:CDS
AAATTCAATAACTGAGAAGC+CGG 0.559695 1_4:-69730427 Msa0181500:CDS
TCTATTAGCAATCCTCCAAA+CGG 0.561122 1_4:+69727457 None:intergenic
AAGCGTATCTGCAGGCAGCA+TGG 0.561590 1_4:-69728090 Msa0181500:CDS
CTCCTCCTCCATATTTGGTG+AGG 0.561991 1_4:+69728670 None:intergenic
AGCACAAACCCTACTTCTCA+TGG 0.568994 1_4:-69727661 Msa0181500:CDS
TGAACAACATGTTGTGTTGA+GGG 0.569993 1_4:-69727572 Msa0181500:CDS
ACATGTTGTTCATTGTTGGA+TGG 0.570109 1_4:+69727583 None:intergenic
TTATTCGGAGTAGAAGGCTC+AGG 0.570221 1_4:+69727919 None:intergenic
GGAGCCAGATGTGATGAACC+TGG 0.570260 1_4:+69727337 None:intergenic
TCTATTGGTGGCAAAAGGGG+TGG 0.571210 1_4:+69730375 None:intergenic
ATGGTCAAGGTGTTGCGGGG+AGG 0.571632 1_4:-69729078 Msa0181500:CDS
CGGAGGAAGCAACATAATCC+GGG 0.572590 1_4:-69727035 Msa0181500:CDS
TTCCAGAAGATTGAAACTTG+AGG 0.573036 1_4:-69727158 Msa0181500:CDS
TTCAAATACAGGCAAAGCCA+AGG 0.574356 1_4:+69729990 None:intergenic
ATGAGAGCATAATGAACCAA+AGG 0.574665 1_4:+69728992 None:intergenic
CCCAAACATGGGTTCCCTGT+AGG 0.575392 1_4:-69729267 Msa0181500:CDS
AAAATACCTGAGTGAATGGA+TGG 0.576234 1_4:+69729658 None:intergenic
TCACTCCCCTGAACTCTCAC+AGG 0.578779 1_4:+69726976 None:intergenic
ACCTTGTTAATCTTTCGAGA+TGG 0.579070 1_4:+69728054 None:intergenic
AAAATGGCCTCAGCTACTGA+AGG 0.579468 1_4:+69727397 None:intergenic
TTATGTCATGCACCAAAACC+CGG 0.579981 1_4:+69727017 None:intergenic
TGAGAGCATAATGAACCAAA+GGG 0.580200 1_4:+69728993 None:intergenic
GTTGAGGGGATCGCCAGAGT+CGG 0.581271 1_4:-69727557 Msa0181500:CDS
TTTGGACCATCCATTCACTC+AGG 0.581838 1_4:-69729664 Msa0181500:intron
CTCAGGTTTGGGCACCTGTG+AGG 0.583880 1_4:-69730266 Msa0181500:CDS
TGCCTCACCAAATATGGAGG+AGG 0.587748 1_4:-69728672 Msa0181500:CDS
AAACATACATGCACTCCTGA+AGG 0.588299 1_4:+69727068 None:intergenic
GTTTGGGCACCTGTGAGGAA+TGG 0.588324 1_4:-69730261 Msa0181500:CDS
GACATGTGATCCAAAGGCCA+TGG 0.591421 1_4:+69731257 None:intergenic
AAAACACTCCTATGCCTACA+GGG 0.592526 1_4:+69729253 None:intergenic
ACTTCTCATGGTTCATGCCA+CGG 0.596610 1_4:-69727649 Msa0181500:CDS
AAAATCAATTGCTAGGAGGA+AGG 0.596853 1_4:-69727789 Msa0181500:CDS
TATGGTTGGAATTTCAATTG+GGG 0.600606 1_4:+69727621 None:intergenic
TTATTCCCTAAGGTAGACAT+CGG 0.604395 1_4:+69728584 None:intergenic
TGCTGCTGGTGTTGAACTCG+AGG 0.610461 1_4:-69728798 Msa0181500:CDS
CGTGTTATTGAATCTGTCCA+AGG 0.611341 1_4:-69728006 Msa0181500:CDS
GTTTGAGCTTAGATAGGGAA+CGG 0.611978 1_4:+69728028 None:intergenic
GGCAGCATGGGATATCTCGT+TGG 0.612803 1_4:-69728077 Msa0181500:CDS
TTTAGGGTCTCTTTGAACTG+TGG 0.613295 1_4:-69727205 Msa0181500:CDS
TCATGAAATTCAGTAATCCC+AGG 0.614579 1_4:+69728884 None:intergenic
ATGGTTGGAATTTCAATTGG+GGG 0.615940 1_4:+69727622 None:intergenic
CACAGAAAACATGTACATCA+GGG 0.616371 1_4:+69730155 None:intergenic
ATAAAGGACATGTGATCCAA+AGG 0.617226 1_4:+69731251 None:intergenic
GACTATTCAGGAAATTGGAA+AGG 0.619669 1_4:-69727725 Msa0181500:CDS
ATCTAGATTTAGAAACACCA+TGG 0.622079 1_4:-69731274 Msa0181500:CDS
CCATCAGTAAAAGTCCATAG+AGG 0.625976 1_4:+69731173 None:intergenic
AGAGTATGAACGTACCGCCA+AGG 0.629334 1_4:+69728453 None:intergenic
TACCGATTACCATTCCTCAC+AGG 0.629926 1_4:+69730252 None:intergenic
ACTATGTGGATCAAGGACAA+AGG 0.631383 1_4:+69730206 None:intergenic
AAAGATTAACTATGCTCCTG+AGG 0.633444 1_4:-69729917 Msa0181500:CDS
TTTGTGCCCTTCAGTAGCTG+AGG 0.634116 1_4:-69727404 Msa0181500:CDS
TTCAATAACTGAGAAGCCGG+TGG 0.635214 1_4:-69730424 Msa0181500:CDS
GGCATGAACCATGAGAAGTA+GGG 0.635585 1_4:+69727653 None:intergenic
ACATACAAGAGAAGATCTTG+TGG 0.635928 1_4:+69731111 None:intergenic
AGATACGCTTCATTGTAGTA+GGG 0.641314 1_4:+69728103 None:intergenic
AGTGTGCATGTCTACAACTG+AGG 0.643299 1_4:-69729170 Msa0181500:CDS
TGATTGAGTCCATTACTATG+TGG 0.646033 1_4:+69730192 None:intergenic
TCATTGTTGGATGGAATGAA+CGG 0.648544 1_4:+69727592 None:intergenic
CGATGCCTCACCAAATATGG+AGG 0.650921 1_4:-69728675 Msa0181500:CDS
AAAAGGAATAGAACTAGGAG+TGG 0.652567 1_4:-69727697 Msa0181500:CDS
TTTACCTCTAGCCCAAACAT+GGG 0.653751 1_4:-69729278 Msa0181500:CDS
ATGAACAACATGTTGTGTTG+AGG 0.654614 1_4:-69727573 Msa0181500:CDS
TGGACTCAATCAGTATAGAA+CGG 0.656345 1_4:-69730181 Msa0181500:CDS
AAATGGCCTCAGCTACTGAA+GGG 0.658026 1_4:+69727398 None:intergenic
GGTGAGGCATCGGGTCTAGG+TGG 0.659977 1_4:+69728686 None:intergenic
ATGGAAAATCAATTGCTAGG+AGG 0.664194 1_4:-69727793 Msa0181500:CDS
AAACCCTCAGAGAGGAAACG+TGG 0.667434 1_4:-69728551 Msa0181500:CDS
GTGCATGTCTACAACTGAGG+CGG 0.669875 1_4:-69729167 Msa0181500:CDS
AACATGGTCAAGGTGTTGCG+GGG 0.672343 1_4:-69729081 Msa0181500:CDS
GTCGAACATCACTTACAACA+TGG 0.677843 1_4:-69729097 Msa0181500:CDS
GATCTTAGAGATATTGACAG+TGG 0.683127 1_4:-69729317 Msa0181500:CDS
AAAACATCATTAGAAGAACA+TGG 0.686020 1_4:-69731314 Msa0181500:CDS
GCCATCTCGAAAGATTAACA+AGG 0.686233 1_4:-69728055 Msa0181500:CDS
GATCTGGCTCCAGAAGCTTG+TGG 0.687276 1_4:-69727370 Msa0181500:CDS
AATGTTGAGCATGATCTCGG+CGG 0.687474 1_4:+69730028 None:intergenic
CATCACTTACAACATGGTCA+AGG 0.693887 1_4:-69729091 Msa0181500:CDS
TCTGTGGATGGAGAGAACGA+TGG 0.695263 1_4:-69730138 Msa0181500:CDS
AGTACCACAGGATCCATCAG+AGG 0.699060 1_4:-69728639 Msa0181500:CDS
ACATAAAGAAACCCTCAGAG+AGG 0.705928 1_4:-69728559 Msa0181500:CDS
TGAACCTCTGATGGATCCTG+TGG 0.708138 1_4:+69728635 None:intergenic
AAGCTCCTGTGAGAGTTCAG+GGG 0.712104 1_4:-69726981 Msa0181500:CDS
GGATTGCTAATAGAGGACGC+TGG 0.717922 1_4:-69727448 Msa0181500:CDS
TGTTGAGCATGATCTCGGCG+GGG 0.718991 1_4:+69730030 None:intergenic
GAACAACATGTTGTGTTGAG+GGG 0.732713 1_4:-69727571 Msa0181500:CDS
TGAAATTCAGTAATCCCAGG+AGG 0.744471 1_4:+69728887 None:intergenic
TATGTTTCGAGATCATCCGG+AGG 0.758424 1_4:-69727052 Msa0181500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTAGAGTTTAA+TGG - chr1_4:69728579-69728598 Msa0181500:CDS 10.0%
!! GAATTATAAAATGTTAATAT+TGG + chr1_4:69729852-69729871 None:intergenic 10.0%
!! ATAAACTCATTATACATTAA+GGG + chr1_4:69727303-69727322 None:intergenic 15.0%
!! TATAAACTCATTATACATTA+AGG + chr1_4:69727304-69727323 None:intergenic 15.0%
!!! ATGATTTTTGAGTATTTATA+AGG - chr1_4:69727601-69727620 Msa0181500:CDS 15.0%
!!! AACTGCATTTTAAAAATAAT+TGG - chr1_4:69728681-69728700 Msa0181500:CDS 15.0%
!! TAAAAATAATTGGAAAATAC+TGG - chr1_4:69728691-69728710 Msa0181500:CDS 15.0%
!!! GGTAAAAACATTATTAATTT+TGG - chr1_4:69731330-69731349 Msa0181500:CDS 15.0%
!! ATTCATATGATAAAATAGTT+TGG - chr1_4:69731401-69731420 Msa0181500:five_prime_UTR 15.0%
!! ATAAGAAAACCATAAAACTT+AGG + chr1_4:69728382-69728401 None:intergenic 20.0%
!!! TTTTATGGTTTTCTTATGTT+TGG - chr1_4:69728385-69728404 Msa0181500:intron 20.0%
!!! ATTTTATACCAAGTTTTCAA+TGG - chr1_4:69728439-69728458 Msa0181500:intron 20.0%
!!! TTATTTTTAGAGTTTAATGG+AGG - chr1_4:69728582-69728601 Msa0181500:CDS 20.0%
!!! TTTAAAATGCAGTTACAAAT+AGG + chr1_4:69728675-69728694 None:intergenic 20.0%
!! ATACATGATAAAAACAAATC+AGG + chr1_4:69728748-69728767 None:intergenic 20.0%
! CAAAGGAAATGAAAACAAAT+GGG + chr1_4:69726763-69726782 None:intergenic 25.0%
!!! TTCTGACATTTTTTTTCTCA+AGG + chr1_4:69726848-69726867 None:intergenic 25.0%
!!! TCTAATGATGTTTTTGTCTT+GGG + chr1_4:69726898-69726917 None:intergenic 25.0%
!!! TTCTAATGATGTTTTTGTCT+TGG + chr1_4:69726899-69726918 None:intergenic 25.0%
! AAAACATCATTAGAAGAACA+TGG - chr1_4:69726904-69726923 Msa0181500:three_prime_UTR 25.0%
! GAGATGTTTGAAAACAAAAA+AGG + chr1_4:69727009-69727028 None:intergenic 25.0%
! CAACATTCACAAGTAAAATT+AGG + chr1_4:69727331-69727350 None:intergenic 25.0%
!! CTAATTTTACTTGTGAATGT+TGG - chr1_4:69727329-69727348 Msa0181500:CDS 25.0%
! TAATCTTCAAATACTGTAGT+AGG + chr1_4:69727403-69727422 None:intergenic 25.0%
!! TATCCATCCAAATTTTCTAT+TGG + chr1_4:69727861-69727880 None:intergenic 25.0%
! TTAGAATAGTACAGAACATT+GGG + chr1_4:69728158-69728177 None:intergenic 25.0%
! ATTAGAATAGTACAGAACAT+TGG + chr1_4:69728159-69728178 None:intergenic 25.0%
! AATAAAAATACCTGAGTGAA+TGG + chr1_4:69728567-69728586 None:intergenic 25.0%
! TTATCTAGATATAACAGACT+GGG + chr1_4:69728778-69728797 None:intergenic 25.0%
! ATTATCTAGATATAACAGAC+TGG + chr1_4:69728779-69728798 None:intergenic 25.0%
! TTAAATCAGATTTGCAATGA+AGG - chr1_4:69728857-69728876 Msa0181500:CDS 25.0%
! TAAATCAGATTTGCAATGAA+GGG - chr1_4:69728858-69728877 Msa0181500:CDS 25.0%
! GATTTAATAGATTGAGCAAT+AGG + chr1_4:69729511-69729530 None:intergenic 25.0%
!!! CTTTATGTTTTTATTCCCTA+AGG + chr1_4:69729647-69729666 None:intergenic 25.0%
! AACAAACATACAGATTGTAA+TGG - chr1_4:69730406-69730425 Msa0181500:CDS 25.0%
! AAAGAAGTGATTAATGGTAA+AGG - chr1_4:69730467-69730486 Msa0181500:intron 25.0%
! TTATGGTTGGAATTTCAATT+GGG + chr1_4:69730601-69730620 None:intergenic 25.0%
! TTTATGGTTGGAATTTCAAT+TGG + chr1_4:69730602-69730621 None:intergenic 25.0%
! ATGATATCAATGCATTGTTT+AGG + chr1_4:69730908-69730927 None:intergenic 25.0%
! AATGAAGACTGTAACTATTA+AGG - chr1_4:69730964-69730983 Msa0181500:intron 25.0%
! CATATAGAGAAGATATCATA+AGG - chr1_4:69730990-69731009 Msa0181500:intron 25.0%
! AGAAGATATCATAAGGTTTA+GGG - chr1_4:69730997-69731016 Msa0181500:intron 25.0%
!!! CAGTTTGTTATCTATTGTTT+AGG - chr1_4:69731284-69731303 Msa0181500:CDS 25.0%
!! TTTAGGTTCTTGTAATCTTT+AGG - chr1_4:69731301-69731320 Msa0181500:CDS 25.0%
!!! TTTTTTGATGACACATAACA+TGG - chr1_4:69731425-69731444 Msa0181500:five_prime_UTR 25.0%
GCAAAGGAAATGAAAACAAA+TGG + chr1_4:69726764-69726783 None:intergenic 30.0%
GATTCAAAAGTGATAAAGCT+TGG + chr1_4:69726809-69726828 None:intergenic 30.0%
AAAAAAAATGTCAGAACCTG+AGG - chr1_4:69726852-69726871 Msa0181500:three_prime_UTR 30.0%
ATCTAGATTTAGAAACACCA+TGG - chr1_4:69726944-69726963 Msa0181500:three_prime_UTR 30.0%
GAAAACAAAAAAGGTGACAT+GGG + chr1_4:69727000-69727019 None:intergenic 30.0%
TGAAAACAAAAAAGGTGACA+TGG + chr1_4:69727001-69727020 None:intergenic 30.0%
TGCGTTGTTAATTATGTAGA+AGG - chr1_4:69727434-69727453 Msa0181500:CDS 30.0%
ATGTAGCATGTACTTGTATA+AGG + chr1_4:69727573-69727592 None:intergenic 30.0%
ACTGGATTATGAAAACTTCA+CGG + chr1_4:69727681-69727700 None:intergenic 30.0%
! CATGTATTTTGCAGTTTATG+TGG - chr1_4:69727722-69727741 Msa0181500:CDS 30.0%
!! AACTAAAGCTACTGTTTTTC+AGG - chr1_4:69727762-69727781 Msa0181500:CDS 30.0%
AAATTCAATAACTGAGAAGC+CGG - chr1_4:69727791-69727810 Msa0181500:CDS 30.0%
!! ATTTTCTATTGGTGGCAAAA+GGG + chr1_4:69727850-69727869 None:intergenic 30.0%
!! AATTTTCTATTGGTGGCAAA+AGG + chr1_4:69727851-69727870 None:intergenic 30.0%
TTTGCCACCAATAGAAAATT+TGG - chr1_4:69727851-69727870 Msa0181500:CDS 30.0%
TAAAAGAAACTCAACCTCTA+GGG + chr1_4:69728345-69728364 None:intergenic 30.0%
TTAAAAGAAACTCAACCTCT+AGG + chr1_4:69728346-69728365 None:intergenic 30.0%
! GCAATCTATCCTAAGTTTTA+TGG - chr1_4:69728370-69728389 Msa0181500:intron 30.0%
!! AAAAGTTGTTCGAGTTTTGA+TGG - chr1_4:69729010-69729029 Msa0181500:CDS 30.0%
TAAATGAGCATCTACGATAT+AGG + chr1_4:69729080-69729099 None:intergenic 30.0%
ATATCGTAGATGCTCATTTA+TGG - chr1_4:69729080-69729099 Msa0181500:CDS 30.0%
TATCGTAGATGCTCATTTAT+GGG - chr1_4:69729081-69729100 Msa0181500:CDS 30.0%
TTCATTATGCTCTCATGTTT+GGG - chr1_4:69729233-69729252 Msa0181500:CDS 30.0%
CTGTTTCATTGTTGACAATA+TGG + chr1_4:69729380-69729399 None:intergenic 30.0%
ATTATTGAAGCAACTGATGA+AGG - chr1_4:69729460-69729479 Msa0181500:intron 30.0%
TTGAGCAATAGGAATAGATT+CGG + chr1_4:69729500-69729519 None:intergenic 30.0%
!! TTCTACAACGTTATTTTGCT+GGG - chr1_4:69729719-69729738 Msa0181500:intron 30.0%
!! TTTACAAATTTGCTGCTATC+TGG - chr1_4:69729930-69729949 Msa0181500:CDS 30.0%
CGATTACGTAATACATTCTT+CGG + chr1_4:69729969-69729988 None:intergenic 30.0%
!! TAGCTTTAACACAAACTTCT+TGG - chr1_4:69730069-69730088 Msa0181500:CDS 30.0%
TCAGGAAATGAACTAACAAT+TGG + chr1_4:69730284-69730303 None:intergenic 30.0%
AATTCATTCTCTTTCATCTG+AGG + chr1_4:69730365-69730384 None:intergenic 30.0%
!! GTTTGTTTCTGATACTTTAG+AGG + chr1_4:69730393-69730412 None:intergenic 30.0%
! GTAATGGAAAATCAATTGCT+AGG - chr1_4:69730422-69730441 Msa0181500:CDS 30.0%
CTTGAGAAAGAAGTGATTAA+TGG - chr1_4:69730461-69730480 Msa0181500:intron 30.0%
!!! TCCTAGTTCTATTCCTTTTT+CGG + chr1_4:69730520-69730539 None:intergenic 30.0%
TATGGTTGGAATTTCAATTG+GGG + chr1_4:69730600-69730619 None:intergenic 30.0%
ATATCAATGCATTGTTTAGG+AGG + chr1_4:69730905-69730924 None:intergenic 30.0%
!!! ATTTCTTTTCTAGCTGCAAA+AGG + chr1_4:69730947-69730966 None:intergenic 30.0%
GAGAAGATATCATAAGGTTT+AGG - chr1_4:69730996-69731015 Msa0181500:intron 30.0%
CACATTTGATATCAAGTACA+TGG - chr1_4:69731087-69731106 Msa0181500:intron 30.0%
CATGACATAACATCAAATCT+TGG - chr1_4:69731214-69731233 Msa0181500:CDS 30.0%
! CTTGTAATCTTTAGGAAGAT+AGG - chr1_4:69731309-69731328 Msa0181500:CDS 30.0%
TTTGGATTTCATCCAACATA+TGG + chr1_4:69731497-69731516 None:intergenic 30.0%
GTGTAGAACAATTTCAGCAA+AGG + chr1_4:69726780-69726799 None:intergenic 35.0%
TTTCTCAAGGTTCTGTTTGT+GGG + chr1_4:69726835-69726854 None:intergenic 35.0%
! TTTTCTCAAGGTTCTGTTTG+TGG + chr1_4:69726836-69726855 None:intergenic 35.0%
! AAGTCTTGATTTTCTTCCTC+AGG + chr1_4:69726871-69726890 None:intergenic 35.0%
!! AATGATGTTTTTGTCTTGGG+AGG + chr1_4:69726895-69726914 None:intergenic 35.0%
AGAAGAACATGGTTGTTCTA+TGG - chr1_4:69726915-69726934 Msa0181500:three_prime_UTR 35.0%
ATAAAGGACATGTGATCCAA+AGG + chr1_4:69726970-69726989 None:intergenic 35.0%
! ACTTTTACTGATGGAGAAGA+TGG - chr1_4:69727054-69727073 Msa0181500:CDS 35.0%
ACATACAAGAGAAGATCTTG+TGG + chr1_4:69727110-69727129 None:intergenic 35.0%
CAGCTGTTCAATTTAGAAGA+GGG + chr1_4:69727495-69727514 None:intergenic 35.0%
TCAGCTGTTCAATTTAGAAG+AGG + chr1_4:69727496-69727515 None:intergenic 35.0%
ATTGAACAGCTGAAGTTTCA+TGG - chr1_4:69727503-69727522 Msa0181500:CDS 35.0%
!! TTTTCTATTGGTGGCAAAAG+GGG + chr1_4:69727849-69727868 None:intergenic 35.0%
! CCATCCAAATTTTCTATTGG+TGG + chr1_4:69727858-69727877 None:intergenic 35.0%
CCACCAATAGAAAATTTGGA+TGG - chr1_4:69727855-69727874 Msa0181500:CDS 35.0%
GGATGGATATTGTGTAATCA+AGG - chr1_4:69727872-69727891 Msa0181500:CDS 35.0%
TGATTGAGTCCATTACTATG+TGG + chr1_4:69728029-69728048 None:intergenic 35.0%
TGGACTCAATCAGTATAGAA+CGG - chr1_4:69728037-69728056 Msa0181500:CDS 35.0%
CACAGAAAACATGTACATCA+GGG + chr1_4:69728066-69728085 None:intergenic 35.0%
! ATGTACATGTTTTCTGTGGA+TGG - chr1_4:69728068-69728087 Msa0181500:CDS 35.0%
TGTAATGTTGAGCATGATCT+CGG + chr1_4:69728196-69728215 None:intergenic 35.0%
AAAGATTAACTATGCTCCTG+AGG - chr1_4:69728301-69728320 Msa0181500:intron 35.0%
!!! TTGCAGATTTTTTCAACCTC+AGG + chr1_4:69728320-69728339 None:intergenic 35.0%
AATCTCTGCCATTGAAAACT+TGG + chr1_4:69728450-69728469 None:intergenic 35.0%
! ATTCCTCAATGATCTGCTTT+TGG - chr1_4:69728494-69728513 Msa0181500:CDS 35.0%
AAACCAAAAGCAGATCATTG+AGG + chr1_4:69728500-69728519 None:intergenic 35.0%
AAAATACCTGAGTGAATGGA+TGG + chr1_4:69728563-69728582 None:intergenic 35.0%
GGAAAATACTGGATTCTCAT+TGG - chr1_4:69728702-69728721 Msa0181500:CDS 35.0%
CATTGCCAAGTTATATCTGT+GGG + chr1_4:69728834-69728853 None:intergenic 35.0%
GATCTTAGAGATATTGACAG+TGG - chr1_4:69728901-69728920 Msa0181500:CDS 35.0%
!! AGTTTTGATGGTAGTTGCAT+GGG - chr1_4:69729022-69729041 Msa0181500:CDS 35.0%
ATCGTAGATGCTCATTTATG+GGG - chr1_4:69729082-69729101 Msa0181500:CDS 35.0%
! TGAGAGCATAATGAACCAAA+GGG + chr1_4:69729228-69729247 None:intergenic 35.0%
! ATGAGAGCATAATGAACCAA+AGG + chr1_4:69729229-69729248 None:intergenic 35.0%
GTTCATTATGCTCTCATGTT+TGG - chr1_4:69729232-69729251 Msa0181500:CDS 35.0%
TCATGAAATTCAGTAATCCC+AGG + chr1_4:69729337-69729356 None:intergenic 35.0%
TTATTCCCTAAGGTAGACAT+CGG + chr1_4:69729637-69729656 None:intergenic 35.0%
!! GTTCTACAACGTTATTTTGC+TGG - chr1_4:69729718-69729737 Msa0181500:intron 35.0%
TTTATTAATCTGCTGCTAGC+TGG - chr1_4:69729814-69729833 Msa0181500:intron 35.0%
ACATGCATACTCTACTACAA+TGG - chr1_4:69729883-69729902 Msa0181500:intron 35.0%
AGATACGCTTCATTGTAGTA+GGG + chr1_4:69730118-69730137 None:intergenic 35.0%
ACCTTGTTAATCTTTCGAGA+TGG + chr1_4:69730167-69730186 None:intergenic 35.0%
AACACGTTTGAGCTTAGATA+GGG + chr1_4:69730198-69730217 None:intergenic 35.0%
TAACACGTTTGAGCTTAGAT+AGG + chr1_4:69730199-69730218 None:intergenic 35.0%
!! GCGTTTGATTTGAATTCTCT+TGG - chr1_4:69730245-69730264 Msa0181500:CDS 35.0%
ATGGAAAATCAATTGCTAGG+AGG - chr1_4:69730425-69730444 Msa0181500:CDS 35.0%
AAAATCAATTGCTAGGAGGA+AGG - chr1_4:69730429-69730448 Msa0181500:CDS 35.0%
GACTATTCAGGAAATTGGAA+AGG - chr1_4:69730493-69730512 Msa0181500:intron 35.0%
AAATTGGAAAGGACCGAAAA+AGG - chr1_4:69730504-69730523 Msa0181500:intron 35.0%
ACCGAAAAAGGAATAGAACT+AGG - chr1_4:69730516-69730535 Msa0181500:intron 35.0%
AAAAGGAATAGAACTAGGAG+TGG - chr1_4:69730521-69730540 Msa0181500:intron 35.0%
ATGGTTGGAATTTCAATTGG+GGG + chr1_4:69730599-69730618 None:intergenic 35.0%
! ATGAACGGATCTTTTATGGT+TGG + chr1_4:69730614-69730633 None:intergenic 35.0%
! TGGAATGAACGGATCTTTTA+TGG + chr1_4:69730618-69730637 None:intergenic 35.0%
TCATTGTTGGATGGAATGAA+CGG + chr1_4:69730629-69730648 None:intergenic 35.0%
ACATGTTGTTCATTGTTGGA+TGG + chr1_4:69730638-69730657 None:intergenic 35.0%
CACAACATGTTGTTCATTGT+TGG + chr1_4:69730642-69730661 None:intergenic 35.0%
ATGAACAACATGTTGTGTTG+AGG - chr1_4:69730645-69730664 Msa0181500:intron 35.0%
TGAACAACATGTTGTGTTGA+GGG - chr1_4:69730646-69730665 Msa0181500:intron 35.0%
! GGAGAGTTTAAAGCATTAGT+CGG + chr1_4:69730695-69730714 None:intergenic 35.0%
AAGTTCTGCTATCACATTGT+CGG + chr1_4:69730735-69730754 None:intergenic 35.0%
TCTATTAGCAATCCTCCAAA+CGG + chr1_4:69730764-69730783 None:intergenic 35.0%
TTCCAGAAGATTGAAACTTG+AGG - chr1_4:69731060-69731079 Msa0181500:intron 35.0%
AACCTCAAGTTTCAATCTTC+TGG + chr1_4:69731065-69731084 None:intergenic 35.0%
AGAAGATTGAAACTTGAGGT+TGG - chr1_4:69731064-69731083 Msa0181500:intron 35.0%
! ACATGGACGATGATAATGAA+TGG - chr1_4:69731104-69731123 Msa0181500:intron 35.0%
! CATGGACGATGATAATGAAT+GGG - chr1_4:69731105-69731124 Msa0181500:intron 35.0%
ATGTATGTTTCGAGATCATC+CGG - chr1_4:69731163-69731182 Msa0181500:CDS 35.0%
GAATTGTTCAGTCCATATGT+TGG - chr1_4:69731482-69731501 Msa0181500:five_prime_UTR 35.0%
TTTAGAAACACCATGGCCTT+TGG - chr1_4:69726951-69726970 Msa0181500:three_prime_UTR 40.0%
! TGACATGGGATTGGTGATAA+AGG + chr1_4:69726986-69727005 None:intergenic 40.0%
CAAAAAAGGTGACATGGGAT+TGG + chr1_4:69726995-69727014 None:intergenic 40.0%
ATCAACCTTCTTCTCCTCTA+TGG - chr1_4:69727031-69727050 Msa0181500:CDS 40.0%
AAAGTCCATAGAGGAGAAGA+AGG + chr1_4:69727039-69727058 None:intergenic 40.0%
CCATCAGTAAAAGTCCATAG+AGG + chr1_4:69727048-69727067 None:intergenic 40.0%
! CCTCTATGGACTTTTACTGA+TGG - chr1_4:69727045-69727064 Msa0181500:CDS 40.0%
TTGCCTGGTAATTGCTTTCT+TGG - chr1_4:69727540-69727559 Msa0181500:CDS 40.0%
TGCCTGGTAATTGCTTTCTT+GGG - chr1_4:69727541-69727560 Msa0181500:CDS 40.0%
TAATCCAGTCCAATGTCATG+TGG - chr1_4:69727692-69727711 Msa0181500:CDS 40.0%
TGTTTAGCACCACATGACAT+TGG + chr1_4:69727704-69727723 None:intergenic 40.0%
! GTGGACTGAACTGAATGTAT+TGG - chr1_4:69727929-69727948 Msa0181500:CDS 40.0%
!! TGAACTGAATGTATTGGCTC+AGG - chr1_4:69727935-69727954 Msa0181500:CDS 40.0%
!! TGAATGTATTGGCTCAGGTT+TGG - chr1_4:69727940-69727959 Msa0181500:CDS 40.0%
!! GAATGTATTGGCTCAGGTTT+GGG - chr1_4:69727941-69727960 Msa0181500:CDS 40.0%
CGGTATGTACTTACAACTTC+AGG - chr1_4:69727984-69728003 Msa0181500:CDS 40.0%
CTATGTGGATCAAGGACAAA+GGG + chr1_4:69728014-69728033 None:intergenic 40.0%
ACTATGTGGATCAAGGACAA+AGG + chr1_4:69728015-69728034 None:intergenic 40.0%
GTCCTTGATCCACATAGTAA+TGG - chr1_4:69728017-69728036 Msa0181500:CDS 40.0%
GTCCATTACTATGTGGATCA+AGG + chr1_4:69728022-69728041 None:intergenic 40.0%
CCACAGAAAACATGTACATC+AGG + chr1_4:69728067-69728086 None:intergenic 40.0%
! CCTGATGTACATGTTTTCTG+TGG - chr1_4:69728064-69728083 Msa0181500:CDS 40.0%
TTCAGCAGAAACTACCAGAA+TGG - chr1_4:69728129-69728148 Msa0181500:intron 40.0%
TTCAAATACAGGCAAAGCCA+AGG + chr1_4:69728231-69728250 None:intergenic 40.0%
TGCAACGAAGGTTCAAATAC+AGG + chr1_4:69728242-69728261 None:intergenic 40.0%
AAAAATCTGCAAAGCCCTAG+AGG - chr1_4:69728328-69728347 Msa0181500:intron 40.0%
! TTTGAGGAGCTCAGAGTTTT+TGG - chr1_4:69728536-69728555 Msa0181500:CDS 40.0%
CAAGTGTGAATCATTGTCAC+TGG + chr1_4:69728643-69728662 None:intergenic 40.0%
ACTGGATTCTCATTGGATGT+TGG - chr1_4:69728709-69728728 Msa0181500:CDS 40.0%
TTATATCTGTGGGAATCCAG+GGG + chr1_4:69728824-69728843 None:intergenic 40.0%
GTTATATCTGTGGGAATCCA+GGG + chr1_4:69728825-69728844 None:intergenic 40.0%
AGTTATATCTGTGGGAATCC+AGG + chr1_4:69728826-69728845 None:intergenic 40.0%
GGATTCCCACAGATATAACT+TGG - chr1_4:69728826-69728845 Msa0181500:CDS 40.0%
GCATTGCCAAGTTATATCTG+TGG + chr1_4:69728835-69728854 None:intergenic 40.0%
! AGGGCGTCAAAATGCATTAT+CGG - chr1_4:69728877-69728896 Msa0181500:CDS 40.0%
ATTTACCTCTAGCCCAAACA+TGG - chr1_4:69728939-69728958 Msa0181500:CDS 40.0%
TTTACCTCTAGCCCAAACAT+GGG - chr1_4:69728940-69728959 Msa0181500:CDS 40.0%
AAAACACTCCTATGCCTACA+GGG + chr1_4:69728968-69728987 None:intergenic 40.0%
!! GAGTTTTGATGGTAGTTGCA+TGG - chr1_4:69729021-69729040 Msa0181500:CDS 40.0%
!! GTTTTGATGGTAGTTGCATG+GGG - chr1_4:69729023-69729042 Msa0181500:CDS 40.0%
GTCGAACATCACTTACAACA+TGG - chr1_4:69729121-69729140 Msa0181500:CDS 40.0%
CATCACTTACAACATGGTCA+AGG - chr1_4:69729127-69729146 Msa0181500:CDS 40.0%
GTAATCTGTCTTGCAGAACT+TGG + chr1_4:69729206-69729225 None:intergenic 40.0%
!! GCTGTTTTGCAATCTGTTTG+CGG - chr1_4:69729263-69729282 Msa0181500:CDS 40.0%
! TGTTTGCGGAGTTTTCATAC+AGG - chr1_4:69729277-69729296 Msa0181500:CDS 40.0%
!!! TTAGAGTTTTTTCTGCCTCC+TGG - chr1_4:69729316-69729335 Msa0181500:CDS 40.0%
!!! TAGAGTTTTTTCTGCCTCCT+GGG - chr1_4:69729317-69729336 Msa0181500:CDS 40.0%
TGAAATTCAGTAATCCCAGG+AGG + chr1_4:69729334-69729353 None:intergenic 40.0%
TCATGAACAGAAGATGCTGT+TGG - chr1_4:69729351-69729370 Msa0181500:CDS 40.0%
CATGAACAGAAGATGCTGTT+GGG - chr1_4:69729352-69729371 Msa0181500:CDS 40.0%
! TTTTCACCATGAACCTCTGA+TGG + chr1_4:69729595-69729614 None:intergenic 40.0%
GAGGTTCATGGTGAAAATGT+AGG - chr1_4:69729598-69729617 Msa0181500:intron 40.0%
TTGATCCGATGTCTACCTTA+GGG - chr1_4:69729629-69729648 Msa0181500:intron 40.0%
ACATAAAGAAACCCTCAGAG+AGG - chr1_4:69729659-69729678 Msa0181500:intron 40.0%
! CTACAATGGAGTGCATCTTT+TGG - chr1_4:69729897-69729916 Msa0181500:CDS 40.0%
CAGATACGCTTCATTGTAGT+AGG + chr1_4:69730119-69730138 None:intergenic 40.0%
GCCATCTCGAAAGATTAACA+AGG - chr1_4:69730163-69730182 Msa0181500:CDS 40.0%
GTTTGAGCTTAGATAGGGAA+CGG + chr1_4:69730193-69730212 None:intergenic 40.0%
! CGTGTTATTGAATCTGTCCA+AGG - chr1_4:69730212-69730231 Msa0181500:CDS 40.0%
! TATTGCTTAACGAGCATTGC+TGG + chr1_4:69730331-69730350 None:intergenic 40.0%
AGCAATGCTCGTTAAGCAAT+AGG - chr1_4:69730330-69730349 Msa0181500:CDS 40.0%
GAACAACATGTTGTGTTGAG+GGG - chr1_4:69730647-69730666 Msa0181500:intron 40.0%
AGTTCTGCTATCACATTGTC+GGG + chr1_4:69730734-69730753 None:intergenic 40.0%
GTTTGGAGGATTGCTAATAG+AGG - chr1_4:69730763-69730782 Msa0181500:intron 40.0%
AAGTTGTTACCACAAGCTTC+TGG + chr1_4:69730860-69730879 None:intergenic 40.0%
! TTTAGGGTCTCTTTGAACTG+TGG - chr1_4:69731013-69731032 Msa0181500:intron 40.0%
AAACATACATGCACTCCTGA+AGG + chr1_4:69731153-69731172 None:intergenic 40.0%
! AAGCAACATAATCCGGGTTT+TGG - chr1_4:69731189-69731208 Msa0181500:CDS 40.0%
TTATGTCATGCACCAAAACC+CGG + chr1_4:69731204-69731223 None:intergenic 40.0%
GCTGAAGTTTCATGGCTTCA+TGG - chr1_4:69727511-69727530 Msa0181500:CDS 45.0%
AGCCCAAGAAAGCAATTACC+AGG + chr1_4:69727546-69727565 None:intergenic 45.0%
TTCAATAACTGAGAAGCCGG+TGG - chr1_4:69727794-69727813 Msa0181500:CDS 45.0%
TTGTTGTCGTCTTTCTCCAC+CGG + chr1_4:69727813-69727832 None:intergenic 45.0%
CGCTTCGTTACTTCAAAGAG+TGG - chr1_4:69727910-69727929 Msa0181500:CDS 45.0%
CACCTGTGAGGAATGGTAAT+CGG - chr1_4:69727964-69727983 Msa0181500:CDS 45.0%
! TACCGATTACCATTCCTCAC+AGG + chr1_4:69727969-69727988 None:intergenic 45.0%
TTCTGCTGAAAAACTCGACC+AGG + chr1_4:69728119-69728138 None:intergenic 45.0%
AGAACATTGGGAGACCATTC+TGG + chr1_4:69728146-69728165 None:intergenic 45.0%
AATGTTGAGCATGATCTCGG+CGG + chr1_4:69728193-69728212 None:intergenic 45.0%
GCTCAACATTACAACGTTCG+TGG - chr1_4:69728203-69728222 Msa0181500:intron 45.0%
TTACAACGTTCGTGGAACCT+TGG - chr1_4:69728211-69728230 Msa0181500:intron 45.0%
CCAATACATGACTGCAACGA+AGG + chr1_4:69728254-69728273 None:intergenic 45.0%
CCTTCGTTGCAGTCATGTAT+TGG - chr1_4:69728251-69728270 Msa0181500:intron 45.0%
!!! TCTGCTTTTGGTTTCCTTGC+AGG - chr1_4:69728506-69728525 Msa0181500:CDS 45.0%
CCTCAAATTTACTGCCTGCA+AGG + chr1_4:69728523-69728542 None:intergenic 45.0%
CCTTGCAGGCAGTAAATTTG+AGG - chr1_4:69728520-69728539 Msa0181500:CDS 45.0%
TTTGGACCATCCATTCACTC+AGG - chr1_4:69728554-69728573 Msa0181500:CDS 45.0%
ATTGTTCTATCGCTTACCCC+TGG - chr1_4:69728805-69728824 Msa0181500:CDS 45.0%
CAAAACACTCCTATGCCTAC+AGG + chr1_4:69728969-69728988 None:intergenic 45.0%
!!! CTGTAGGCATAGGAGTGTTT+TGG - chr1_4:69728967-69728986 Msa0181500:CDS 45.0%
!!! CATAGGAGTGTTTTGGCTCA+TGG - chr1_4:69728974-69728993 Msa0181500:CDS 45.0%
AGTGTGCATGTCTACAACTG+AGG - chr1_4:69729048-69729067 Msa0181500:CDS 45.0%
!! ACAACATGGTCAAGGTGTTG+CGG - chr1_4:69729135-69729154 Msa0181500:CDS 45.0%
CTGCAAGACAGATTACCCTT+TGG - chr1_4:69729210-69729229 Msa0181500:CDS 45.0%
CAGAGTCTTAACATTGCTGC+TGG - chr1_4:69729406-69729425 Msa0181500:intron 45.0%
! GGTGTTGAACTCGAGGAAAA+TGG - chr1_4:69729427-69729446 Msa0181500:intron 45.0%
! TCCATATTTGGTGAGGCATC+GGG + chr1_4:69729544-69729563 None:intergenic 45.0%
! CTCCATATTTGGTGAGGCAT+CGG + chr1_4:69729545-69729564 None:intergenic 45.0%
GTTGATCCGATGTCTACCTT+AGG - chr1_4:69729628-69729647 Msa0181500:intron 45.0%
TTTCCACGTTTCCTCTCTGA+GGG + chr1_4:69729673-69729692 None:intergenic 45.0%
! TTTTCCACGTTTCCTCTCTG+AGG + chr1_4:69729674-69729693 None:intergenic 45.0%
AAAGATGCTGCAAAGAGCCT+TGG - chr1_4:69729748-69729767 Msa0181500:intron 45.0%
CTACAATGAAGCGTATCTGC+AGG - chr1_4:69730120-69730139 Msa0181500:CDS 45.0%
TTATTCGGAGTAGAAGGCTC+AGG + chr1_4:69730302-69730321 None:intergenic 45.0%
CTGGACTTATTCGGAGTAGA+AGG + chr1_4:69730308-69730327 None:intergenic 45.0%
! CATTGCTGGCTGGACTTATT+CGG + chr1_4:69730317-69730336 None:intergenic 45.0%
! TCTTTCATCTGAGGCTCTGA+CGG + chr1_4:69730356-69730375 None:intergenic 45.0%
! TGGTAAAGGCGTGACTATTC+AGG - chr1_4:69730481-69730500 Msa0181500:intron 45.0%
GGCGTGACTATTCAGGAAAT+TGG - chr1_4:69730488-69730507 Msa0181500:intron 45.0%
AGCACAAACCCTACTTCTCA+TGG - chr1_4:69730557-69730576 Msa0181500:intron 45.0%
GGCATGAACCATGAGAAGTA+GGG + chr1_4:69730568-69730587 None:intergenic 45.0%
TGGCATGAACCATGAGAAGT+AGG + chr1_4:69730569-69730588 None:intergenic 45.0%
ACTTCTCATGGTTCATGCCA+CGG - chr1_4:69730569-69730588 Msa0181500:intron 45.0%
CTATCACATTGTCGGGCATA+CGG + chr1_4:69730727-69730746 None:intergenic 45.0%
AAATGGCCTCAGCTACTGAA+GGG + chr1_4:69730823-69730842 None:intergenic 45.0%
AAAATGGCCTCAGCTACTGA+AGG + chr1_4:69730824-69730843 None:intergenic 45.0%
! TTCAGTAGCTGAGGCCATTT+TGG - chr1_4:69730823-69730842 Msa0181500:intron 45.0%
GCTTGTGGTAACAACTTTCC+AGG - chr1_4:69730863-69730882 Msa0181500:intron 45.0%
CTTTCCAGGTTCATCACATC+TGG - chr1_4:69730877-69730896 Msa0181500:intron 45.0%
CTCTTTGAACTGTGGCATTG+TGG - chr1_4:69731021-69731040 Msa0181500:intron 45.0%
TATGTTTCGAGATCATCCGG+AGG - chr1_4:69731166-69731185 Msa0181500:CDS 45.0%
GACATGTGATCCAAAGGCCA+TGG + chr1_4:69726964-69726983 None:intergenic 50.0%
AGCACCACATGACATTGGAC+TGG + chr1_4:69727699-69727718 None:intergenic 50.0%
! TCTATTGGTGGCAAAAGGGG+TGG + chr1_4:69727846-69727865 None:intergenic 50.0%
TCTGTGGATGGAGAGAACGA+TGG - chr1_4:69728080-69728099 Msa0181500:CDS 50.0%
GGAGAGAACGATGGAACTCT+AGG - chr1_4:69728089-69728108 Msa0181500:CDS 50.0%
!! GATGGAACTCTAGGACTTCC+TGG - chr1_4:69728098-69728117 Msa0181500:CDS 50.0%
ATGTTGAGCATGATCTCGGC+GGG + chr1_4:69728192-69728211 None:intergenic 50.0%
CCTACAGGGAACCCATGTTT+GGG + chr1_4:69728954-69728973 None:intergenic 50.0%
!!! AGGAGTGTTTTGGCTCATGG+TGG - chr1_4:69728977-69728996 Msa0181500:CDS 50.0%
!!! AGTGTTTTGGCTCATGGTGG+CGG - chr1_4:69728980-69728999 Msa0181500:CDS 50.0%
GTGCATGTCTACAACTGAGG+CGG - chr1_4:69729051-69729070 Msa0181500:CDS 50.0%
!! CAACATGGTCAAGGTGTTGC+GGG - chr1_4:69729136-69729155 Msa0181500:CDS 50.0%
!! AACATGGTCAAGGTGTTGCG+GGG - chr1_4:69729137-69729156 Msa0181500:CDS 50.0%
ACCCGATGCCTCACCAAATA+TGG - chr1_4:69729540-69729559 Msa0181500:intron 50.0%
CGATGCCTCACCAAATATGG+AGG - chr1_4:69729543-69729562 Msa0181500:intron 50.0%
TGCCTCACCAAATATGGAGG+AGG - chr1_4:69729546-69729565 Msa0181500:intron 50.0%
! CTCCTCCTCCATATTTGGTG+AGG + chr1_4:69729551-69729570 None:intergenic 50.0%
CTCACCAAATATGGAGGAGG+AGG - chr1_4:69729549-69729568 Msa0181500:intron 50.0%
ACCAAATATGGAGGAGGAGG+AGG - chr1_4:69729552-69729571 Msa0181500:intron 50.0%
TCCTCCTCCTCCTCCATATT+TGG + chr1_4:69729556-69729575 None:intergenic 50.0%
AAATATGGAGGAGGAGGAGG+AGG - chr1_4:69729555-69729574 Msa0181500:intron 50.0%
AATATGGAGGAGGAGGAGGA+GGG - chr1_4:69729556-69729575 Msa0181500:intron 50.0%
AGTACCACAGGATCCATCAG+AGG - chr1_4:69729579-69729598 Msa0181500:intron 50.0%
! TGAACCTCTGATGGATCCTG+TGG + chr1_4:69729586-69729605 None:intergenic 50.0%
CAGGATCCATCAGAGGTTCA+TGG - chr1_4:69729586-69729605 Msa0181500:intron 50.0%
AAACCCTCAGAGAGGAAACG+TGG - chr1_4:69729667-69729686 Msa0181500:CDS 50.0%
AGAGTATGAACGTACCGCCA+AGG + chr1_4:69729768-69729787 None:intergenic 50.0%
TTTCAATTGGGGGACTACCG+TGG + chr1_4:69730589-69730608 None:intergenic 50.0%
GCAGAACTTCAAGAGCCGTT+TGG - chr1_4:69730746-69730765 Msa0181500:intron 50.0%
GAACTTCAAGAGCCGTTTGG+AGG - chr1_4:69730749-69730768 Msa0181500:intron 50.0%
GGATTGCTAATAGAGGACGC+TGG - chr1_4:69730770-69730789 Msa0181500:intron 50.0%
TTTGTGCCCTTCAGTAGCTG+AGG - chr1_4:69730814-69730833 Msa0181500:intron 50.0%
!! AGTAGCTGAGGCCATTTTGG+AGG - chr1_4:69730826-69730845 Msa0181500:intron 50.0%
!! TGAGGCCATTTTGGAGGATC+TGG - chr1_4:69730832-69730851 Msa0181500:intron 50.0%
TGGAGCCAGATCCTCCAAAA+TGG + chr1_4:69730840-69730859 None:intergenic 50.0%
AGCATGTGATGCAGACCTTC+AGG - chr1_4:69731135-69731154 Msa0181500:CDS 50.0%
! CCGGATTATGTTGCTTCCTC+CGG + chr1_4:69731185-69731204 None:intergenic 50.0%
CCGGAGGAAGCAACATAATC+CGG - chr1_4:69731182-69731201 Msa0181500:CDS 50.0%
CGGAGGAAGCAACATAATCC+GGG - chr1_4:69731183-69731202 Msa0181500:CDS 50.0%
GAAGCTCCTGTGAGAGTTCA+GGG - chr1_4:69731236-69731255 Msa0181500:CDS 50.0%
AAGCTCCTGTGAGAGTTCAG+GGG - chr1_4:69731237-69731256 Msa0181500:CDS 50.0%
GCTTCATGGCTAGAGTTGCC+TGG - chr1_4:69727525-69727544 Msa0181500:CDS 55.0%
GTTTGGGCACCTGTGAGGAA+TGG - chr1_4:69727957-69727976 Msa0181500:CDS 55.0%
TGTTGAGCATGATCTCGGCG+GGG + chr1_4:69728191-69728210 None:intergenic 55.0%
! GGAACCCATGTTTGGGCTAG+AGG + chr1_4:69728947-69728966 None:intergenic 55.0%
CCCAAACATGGGTTCCCTGT+AGG - chr1_4:69728951-69728970 Msa0181500:CDS 55.0%
GCCTACAGGGAACCCATGTT+TGG + chr1_4:69728955-69728974 None:intergenic 55.0%
CATGGGTTCCCTGTAGGCAT+AGG - chr1_4:69728957-69728976 Msa0181500:CDS 55.0%
! TGCTGCTGGTGTTGAACTCG+AGG - chr1_4:69729420-69729439 Msa0181500:intron 55.0%
!! TTTGGTGAGGCATCGGGTCT+AGG + chr1_4:69729538-69729557 None:intergenic 55.0%
GATGCTGCAAAGAGCCTTGG+CGG - chr1_4:69729751-69729770 Msa0181500:intron 55.0%
AAGCGTATCTGCAGGCAGCA+TGG - chr1_4:69730128-69730147 Msa0181500:CDS 55.0%
AGCGTATCTGCAGGCAGCAT+GGG - chr1_4:69730129-69730148 Msa0181500:CDS 55.0%
GGCAGCATGGGATATCTCGT+TGG - chr1_4:69730141-69730160 Msa0181500:CDS 55.0%
!! GAATCTGTCCAAGGCGCTGA+AGG - chr1_4:69730221-69730240 Msa0181500:CDS 55.0%
! GCTTAACGAGCATTGCTGGC+TGG + chr1_4:69730327-69730346 None:intergenic 55.0%
TCGGGCATACGGTGAGAAGT+TGG + chr1_4:69730716-69730735 None:intergenic 55.0%
! GATCTGGCTCCAGAAGCTTG+TGG - chr1_4:69730848-69730867 Msa0181500:intron 55.0%
GGAGCCAGATGTGATGAACC+TGG + chr1_4:69730884-69730903 None:intergenic 55.0%
GGAAGCTCCTGTGAGAGTTC+AGG - chr1_4:69731235-69731254 Msa0181500:CDS 55.0%
TCACTCCCCTGAACTCTCAC+AGG + chr1_4:69731245-69731264 None:intergenic 55.0%
CTCAGGTTTGGGCACCTGTG+AGG - chr1_4:69727952-69727971 Msa0181500:CDS 60.0%
!! ATGGTCAAGGTGTTGCGGGG+AGG - chr1_4:69729140-69729159 Msa0181500:CDS 60.0%
!! TGGTCAAGGTGTTGCGGGGA+GGG - chr1_4:69729141-69729160 Msa0181500:CDS 60.0%
CAAACGCTCCTTCAGCGCCT+TGG + chr1_4:69730232-69730251 None:intergenic 60.0%
GTTGAGGGGATCGCCAGAGT+CGG - chr1_4:69730661-69730680 Msa0181500:intron 60.0%
TTGAGGGGATCGCCAGAGTC+GGG - chr1_4:69730662-69730681 Msa0181500:intron 60.0%
!! GGTGAGGCATCGGGTCTAGG+TGG + chr1_4:69729535-69729554 None:intergenic 65.0%
!! GGAGGAGGAGGGAGTACCAC+AGG - chr1_4:69729567-69729586 Msa0181500:intron 65.0%
GTCGGCTGCATTCCCGACTC+TGG + chr1_4:69730677-69730696 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 69726724 69731516 69726724 ID=Msa0181500;Name=Msa0181500
chr1_4 mRNA 69726724 69731516 69726724 ID=Msa0181500-mRNA-1;Parent=Msa0181500;Name=Msa0181500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=135|1|1|1|1|1|5|252|979
chr1_4 exon 69726724 69728129 69726724 ID=Msa0181500-mRNA-1:exon:23226;Parent=Msa0181500-mRNA-1
chr1_4 exon 69728468 69729374 69728468 ID=Msa0181500-mRNA-1:exon:23225;Parent=Msa0181500-mRNA-1
chr1_4 exon 69729665 69729712 69729665 ID=Msa0181500-mRNA-1:exon:23224;Parent=Msa0181500-mRNA-1
chr1_4 exon 69729891 69730456 69729891 ID=Msa0181500-mRNA-1:exon:23223;Parent=Msa0181500-mRNA-1
chr1_4 exon 69731117 69731516 69731117 ID=Msa0181500-mRNA-1:exon:23222;Parent=Msa0181500-mRNA-1
chr1_4 five_prime_UTR 69731382 69731516 69731382 ID=Msa0181500-mRNA-1:five_prime_utr;Parent=Msa0181500-mRNA-1
chr1_4 CDS 69731117 69731381 69731117 ID=Msa0181500-mRNA-1:cds;Parent=Msa0181500-mRNA-1
chr1_4 CDS 69729891 69730456 69729891 ID=Msa0181500-mRNA-1:cds;Parent=Msa0181500-mRNA-1
chr1_4 CDS 69729665 69729712 69729665 ID=Msa0181500-mRNA-1:cds;Parent=Msa0181500-mRNA-1
chr1_4 CDS 69728468 69729374 69728468 ID=Msa0181500-mRNA-1:cds;Parent=Msa0181500-mRNA-1
chr1_4 CDS 69726976 69728129 69726976 ID=Msa0181500-mRNA-1:cds;Parent=Msa0181500-mRNA-1
chr1_4 three_prime_UTR 69726724 69726975 69726724 ID=Msa0181500-mRNA-1:three_prime_utr;Parent=Msa0181500-mRNA-1
Gene Sequence

>Msa0181500

ATGTCAGAACCTGAGGAAGAAAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGATCTAGATTTAGAAACACCATGGCCTTTGGATCACATGTCCTTTATCACCAATCCCATGTCACCTTTTTTGTTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTATGGACTTTTACTGATGGAGAAGATGGCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCCGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGAAAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGTTACTTCAAAGAGTGGACTGAACTGAATGTATTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCACATAGTAATGGACTCAATCAGTATAGAACGGTTTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCATGTATTGGTGTGATAGAGTTGATAATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTGTGCATGTCTACAACTGAGGCGGCAGCCTATATCGTAGATGCTCATTTATGGGGTTTCAGAGAAGCATGTGTCGAACATCACTTACAACATGGTCAAGGTGTTGCGGGGAGGGCGTTTTTGTCTCAAAACATGTGCTTCTGCACAAACATTACCAAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTGCGGAGTTTTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATTACTGAATTTCATGAACAGAAGATGCTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCGTCTTAGAACCGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGAGGAGGAGGAGGGAGTACCACAGGATCCATCAGAGGTTCATGGTGAAAATGTAGGCAGAAGTGTTGATCCGATGTCTACCTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTTTGCCCTACTACAATGAAGCGTATCTGCAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATTAACAAGGTTAACCGTTCCCTATCTAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTTGGTAATAATCAACTTCCAATTGTTAGTTCATTTCCTGAGCCTTCTACTCCGAATAAGTCCAGCCAGCAATGCTCGTTAAGCAATAGGCCGTCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAAAGTATCAGAAACAAACATACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGGTAAAGGCGTGACTATTCAGGAAATTGGAAAGGACCGAAAAAGGAATAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAACCCTACTTCTCATGGTTCATGCCACGGTAGTCCCCCAATTGAAATTCCAACCATAAAAGATCCGTTCATTCCATCCAACAATGAACAACATGTTGTGTTGAGGGGATCGCCAGAGTCGGGAATGCAGCCGACTAATGCTTTAAACTCTCCAACTTCTCACCGTATGCCCGACAATGTGATAGCAGAACTTCAAGAGCCGTTTGGAGGATTGCTAATAGAGGACGCTGGAAGTTCGAAAGATTTGAGAAATTTGTGCCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGTAACAACTTTCCAGGTTCATCACATCTGGCTCCTCCTAAACAATGCATTGATATCATTAATAATTCAGTGACGCCTTTTGCAGCTAGAAAAGAAATGAAGACTGTAACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAGAAGATTGAAACTTGAGGTTGGCACATTTGATATCAAGTACATGGACGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTTCAGGAGTGCATGTATGTTTCGAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACATCAAATCTTGGAAGCTCCTGTGAGAGTTCAGGGGAGTGA
Protein sequence

>Msa0181500

MSEPEEENQDFPPKTKTSLEEHGCSMDFDLDLETPWPLDHMSFITNPMSPFLFSNISDQPSSPLWTFTDGEDGKLAASAFSDCHKIFSCDSNSITEKPVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMCFCTNITKFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKMLLGSILSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIRLRTESIPIAQSIKSPPRPDASPNMEEEEEGVPQDPSEVHGENVGRSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSSQQCSLSNRPSEPQMKENEFDASKVSETNIQIVMENQLLGGRKHSLEKEVINGKGVTIQEIGKDRKRNRTRSGSSEDSTNPTSHGSCHGSPPIEIPTIKDPFIPSNNEQHVVLRGSPESGMQPTNALNSPTSHRMPDNVIAELQEPFGGLLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGNNFPGSSHLAPPKQCIDIINNSVTPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSRRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE*