AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133550 MtrunA17_Chr1g0203081 97.446 979 25 0 1 979 1 979 0.0 1979
Msa0133550 MtrunA17_Chr6g0472281 69.535 709 181 9 1 691 1 692 0.0 976
Msa0133550 MtrunA17_Chr6g0472281 54.751 221 84 4 759 979 653 857 3.83e-58 215
Msa0133550 MtrunA17_Chr3g0143921 42.730 564 281 12 124 667 139 680 3.16e-136 431
Msa0133550 MtrunA17_Chr3g0143921 47.297 74 38 1 886 958 818 891 8.83e-13 72.8
Msa0133550 MtrunA17_Chr2g0329671 39.469 603 317 15 113 696 167 740 1.59e-118 386
Msa0133550 MtrunA17_Chr2g0329671 45.745 94 50 1 884 977 865 957 2.10e-17 87.8
Msa0133550 MtrunA17_Chr4g0033791 40.228 527 291 9 124 645 147 654 3.53e-114 373
Msa0133550 MtrunA17_Chr4g0033791 43.902 82 45 1 885 966 826 906 3.23e-15 80.5
Msa0133550 MtrunA17_Chr5g0448621 35.135 370 180 9 124 478 126 450 1.18e-55 209
Msa0133550 MtrunA17_Chr5g0448621 65.657 99 27 1 564 662 607 698 1.17e-31 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133550 AT4G24020.1 54.803 989 336 23 36 979 36 958 0.0 951
Msa0133550 AT1G64530.1 60.057 706 243 15 29 704 5 701 0.0 818
Msa0133550 AT1G64530.1 56.436 101 41 2 880 979 738 836 1.33e-27 120
Msa0133550 AT4G24020.2 53.898 744 255 19 258 979 1 678 0.0 690
Msa0133550 AT1G64530.2 62.454 546 181 9 179 704 5 546 0.0 676
Msa0133550 AT1G64530.2 57.576 99 39 2 882 979 585 681 1.42e-27 120
Msa0133550 AT1G76350.2 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0133550 AT1G76350.2 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0133550 AT1G76350.1 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0133550 AT1G76350.1 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0133550 AT1G76350.4 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0133550 AT1G76350.4 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0133550 AT1G76350.3 43.894 565 277 12 120 670 103 641 1.49e-137 432
Msa0133550 AT1G76350.3 34.286 105 52 2 855 958 698 786 6.42e-12 70.1
Msa0133550 AT1G20640.1 42.124 565 299 8 120 668 101 653 1.88e-129 412
Msa0133550 AT1G20640.3 42.124 565 299 8 120 668 101 653 1.88e-129 412
Msa0133550 AT1G20640.2 42.124 565 299 8 120 668 101 653 1.88e-129 412
Msa0133550 AT2G17150.1 39.799 598 292 15 124 673 124 701 4.80e-123 397
Msa0133550 AT2G17150.1 43.023 86 45 2 867 951 798 880 5.47e-14 77.0
Msa0133550 AT2G17150.6 39.799 598 292 15 124 673 124 701 4.80e-123 397
Msa0133550 AT2G17150.6 43.023 86 45 2 867 951 798 880 5.47e-14 77.0
Msa0133550 AT3G59580.2 39.548 531 287 9 124 647 106 609 6.95e-116 377
Msa0133550 AT3G59580.2 41.837 98 54 3 883 978 792 888 1.07e-15 82.8
Msa0133550 AT3G59580.3 39.548 531 287 9 124 647 106 609 6.95e-116 377
Msa0133550 AT3G59580.3 41.837 98 54 3 883 978 792 888 1.07e-15 82.8
Msa0133550 AT3G59580.1 39.548 531 287 9 124 647 106 609 6.95e-116 377
Msa0133550 AT3G59580.1 41.837 98 54 3 883 978 792 888 1.07e-15 82.8
Msa0133550 AT2G43500.3 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.3 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.9 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.9 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.6 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.6 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.1 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.1 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.10 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.10 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.11 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.11 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.7 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.7 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.8 36.661 611 348 10 47 646 81 663 1.09e-115 378
Msa0133550 AT2G43500.8 42.708 96 54 1 883 978 834 928 1.40e-18 92.0
Msa0133550 AT2G43500.5 36.058 624 347 11 47 646 81 676 2.00e-112 369
Msa0133550 AT2G43500.5 42.708 96 54 1 883 978 847 941 1.39e-18 92.0
Msa0133550 AT2G43500.4 36.058 624 347 11 47 646 81 676 2.00e-112 369
Msa0133550 AT2G43500.4 42.708 96 54 1 883 978 847 941 1.39e-18 92.0
Msa0133550 AT2G43500.2 35.737 624 349 11 47 646 81 676 3.39e-111 366
Msa0133550 AT2G43500.2 42.708 96 54 1 883 978 847 941 1.30e-18 92.0
Msa0133550 AT4G38340.2 35.985 528 265 11 124 647 43 501 3.21e-94 314
Msa0133550 AT4G38340.2 36.735 98 56 2 870 964 592 686 2.70e-14 77.8
Msa0133550 AT4G38340.1 35.795 528 266 12 124 647 114 572 1.99e-93 313
Msa0133550 AT4G38340.1 36.735 98 56 2 870 964 663 757 2.97e-14 77.8
Msa0133550 AT2G17150.2 36.750 517 269 13 124 595 124 627 4.83e-93 309
Msa0133550 AT2G17150.5 36.923 520 267 14 124 595 124 630 1.28e-92 308
Msa0133550 AT2G17150.3 36.923 520 267 14 124 595 124 630 1.28e-92 308
Msa0133550 AT4G35270.2 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0133550 AT4G35270.2 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0133550 AT4G35270.2 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0133550 AT4G35270.1 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0133550 AT4G35270.1 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0133550 AT4G35270.1 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0133550 AT4G35270.3 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0133550 AT4G35270.3 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0133550 AT4G35270.3 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0133550 AT4G35270.4 40.984 366 202 4 124 485 153 508 6.91e-85 294
Msa0133550 AT4G35270.4 60.345 116 39 1 560 675 635 743 5.07e-35 145
Msa0133550 AT4G35270.4 43.158 95 51 3 886 978 865 958 1.80e-15 82.0
Msa0133550 AT2G17150.4 36.511 493 237 15 257 702 3 466 9.57e-77 265
Msa0133550 AT2G17150.4 43.023 86 45 2 867 951 543 625 4.58e-14 77.0

Find 239 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCCACCAATAGAAAATT+TGG 0.126044 1_3:-64828864 Msa0133550:CDS
ATATCGTAGATGCTCATTTA+TGG 0.198226 1_3:-64827635 Msa0133550:CDS
GTTCATTATGCTCTCATGTT+TGG 0.230421 1_3:-64827483 Msa0133550:CDS
TTCAGTAGCTGAGGCCATTT+TGG 0.234654 1_3:-64825892 Msa0133550:CDS
GAGAAGATATCATAAGGTTT+AGG 0.254091 1_3:-64825719 Msa0133550:CDS
CTGTTTCATTGTTGACAATA+TGG 0.260307 1_3:+64827338 None:intergenic
ACCCGATGCCTCACCAAATA+TGG 0.272048 1_3:-64827175 Msa0133550:CDS
AACCTCAAGTTTCAATCTTC+TGG 0.273224 1_3:+64825653 None:intergenic
ATTCATATGATAAAATAGTT+TGG 0.286584 1_3:-64825314 Msa0133550:three_prime_UTR
CTTGAGAAAGAAGTGATTAA+TGG 0.295335 1_3:-64826254 Msa0133550:CDS
TTCATTATGCTCTCATGTTT+GGG 0.297926 1_3:-64827482 Msa0133550:CDS
CTGTAGGCATAGGAGTGTTT+TGG 0.304108 1_3:-64827748 Msa0133550:CDS
TTTAGGTTCTTGTAATCTTT+AGG 0.307947 1_3:-64825414 Msa0133550:three_prime_UTR
AGAAGAACATGGTTGTTCTA+TGG 0.308360 1_3:-64829800 Msa0133550:CDS
CAGTTTGTTATCTATTGTTT+AGG 0.309599 1_3:-64825431 Msa0133550:three_prime_UTR
AATGAAGACTGTAACTATTA+AGG 0.320892 1_3:-64825751 Msa0133550:CDS
TGGTAAAGGCGTGACTATTC+AGG 0.321308 1_3:-64826234 Msa0133550:CDS
AAGTTGTTACCACAAGCTTC+TGG 0.322668 1_3:+64825858 None:intergenic
TATCGTAGATGCTCATTTAT+GGG 0.324285 1_3:-64827634 Msa0133550:CDS
GAATGTATTGGCTCAGGTTT+GGG 0.327805 1_3:-64828774 Msa0133550:CDS
CATTGCTGGCTGGACTTATT+CGG 0.328442 1_3:+64826401 None:intergenic
GGAAGCTCCTGTGAGAGTTC+AGG 0.336945 1_3:-64825480 Msa0133550:CDS
ATGATATCAATGCATTGTTT+AGG 0.337373 1_3:+64825810 None:intergenic
GCCTACAGGGAACCCATGTT+TGG 0.338019 1_3:+64827763 None:intergenic
AAGCAACATAATCCGGGTTT+TGG 0.339808 1_3:-64825526 Msa0133550:CDS
TTTCTCAAGGTTCTGTTTGT+GGG 0.342639 1_3:+64829883 None:intergenic
ATCAACCTTCTTCTCCTCTA+TGG 0.342830 1_3:-64829684 Msa0133550:CDS
GATTTAATAGATTGAGCAAT+AGG 0.344298 1_3:+64827207 None:intergenic
GTTTGTTTCTGATACTTTAG+AGG 0.346300 1_3:+64826325 None:intergenic
CACAACATGTTGTTCATTGT+TGG 0.348163 1_3:+64826076 None:intergenic
AGCATGTGATGCAGACCTTC+AGG 0.350853 1_3:-64825580 Msa0133550:CDS
TTTGGATTTCATCCAACATA+TGG 0.354659 1_3:+64825221 None:intergenic
GGCGTGACTATTCAGGAAAT+TGG 0.356009 1_3:-64826227 Msa0133550:CDS
TTTATGGTTGGAATTTCAAT+TGG 0.358415 1_3:+64826116 None:intergenic
AAATTGGAAAGGACCGAAAA+AGG 0.359121 1_3:-64826211 Msa0133550:CDS
GCTTGTGGTAACAACTTTCC+AGG 0.361722 1_3:-64825852 Msa0133550:CDS
AGAAGATATCATAAGGTTTA+GGG 0.363466 1_3:-64825718 Msa0133550:CDS
TATTGCTTAACGAGCATTGC+TGG 0.371298 1_3:+64826387 None:intergenic
CAGATACGCTTCATTGTAGT+AGG 0.378516 1_3:+64826599 None:intergenic
TTTAGAAACACCATGGCCTT+TGG 0.382797 1_3:-64829764 Msa0133550:CDS
TGAATGTATTGGCTCAGGTT+TGG 0.382919 1_3:-64828775 Msa0133550:CDS
GCAAAGGAAATGAAAACAAA+TGG 0.386296 1_3:+64829954 None:intergenic
TGGAGCCAGATCCTCCAAAA+TGG 0.387883 1_3:+64825878 None:intergenic
TAACACGTTTGAGCTTAGAT+AGG 0.389963 1_3:+64826519 None:intergenic
CTCCATATTTGGTGAGGCAT+CGG 0.392508 1_3:+64827173 None:intergenic
CGGTATGTACTTACAACTTC+AGG 0.393209 1_3:-64828731 Msa0133550:CDS
CTTGTAATCTTTAGGAAGAT+AGG 0.394367 1_3:-64825406 Msa0133550:three_prime_UTR
CAACATGGTCAAGGTGTTGC+GGG 0.395005 1_3:-64827579 Msa0133550:CDS
CCGGAGGAAGCAACATAATC+CGG 0.406793 1_3:-64825533 Msa0133550:CDS
TTATGGTTGGAATTTCAATT+GGG 0.410388 1_3:+64826117 None:intergenic
TTAGAATAGTACAGAACATT+GGG 0.411506 1_3:+64828560 None:intergenic
CTGGACTTATTCGGAGTAGA+AGG 0.413845 1_3:+64826410 None:intergenic
CTTTCCAGGTTCATCACATC+TGG 0.413983 1_3:-64825838 Msa0133550:CDS
GATGGAACTCTAGGACTTCC+TGG 0.418289 1_3:-64828617 Msa0133550:CDS
AAATATGGAGGAGGAGGAGG+AGG 0.419910 1_3:-64827160 Msa0133550:CDS
TGGTCAAGGTGTTGCGGGGA+GGG 0.420611 1_3:-64827574 Msa0133550:CDS
TGACATGGGATTGGTGATAA+AGG 0.425035 1_3:+64829732 None:intergenic
CCGGATTATGTTGCTTCCTC+CGG 0.426310 1_3:+64825533 None:intergenic
TAAATGAGCATCTACGATAT+AGG 0.426423 1_3:+64827638 None:intergenic
TTTGGTGAGGCATCGGGTCT+AGG 0.427870 1_3:+64827180 None:intergenic
GTTGATCCGATGTCTACCTT+AGG 0.428534 1_3:-64827087 Msa0133550:CDS
CCTTGCAGGCAGTAAATTTG+AGG 0.428965 1_3:-64828195 Msa0133550:intron
TCCATATTTGGTGAGGCATC+GGG 0.432185 1_3:+64827174 None:intergenic
GAAGCTCCTGTGAGAGTTCA+GGG 0.444633 1_3:-64825479 Msa0133550:CDS
GGATGGATATTGTGTAATCA+AGG 0.447561 1_3:-64828843 Msa0133550:CDS
GCAGAACTTCAAGAGCCGTT+TGG 0.448769 1_3:-64825969 Msa0133550:CDS
TCAGGAAATGAACTAACAAT+TGG 0.451708 1_3:+64826434 None:intergenic
CCACAGAAAACATGTACATC+AGG 0.453576 1_3:+64828651 None:intergenic
CAGAGTCTTAACATTGCTGC+TGG 0.455084 1_3:-64827309 Msa0133550:CDS
TTGTTGTCGTCTTTCTCCAC+CGG 0.456133 1_3:+64828905 None:intergenic
AAGTTCTGCTATCACATTGT+CGG 0.456387 1_3:+64825983 None:intergenic
AGGGCGTCAAAATGCATTAT+CGG 0.458489 1_3:-64827838 Msa0133550:CDS
ACCAAATATGGAGGAGGAGG+AGG 0.458759 1_3:-64827163 Msa0133550:CDS
TTGAGGGGATCGCCAGAGTC+GGG 0.458933 1_3:-64826053 Msa0133550:CDS
AGTTCTGCTATCACATTGTC+GGG 0.459703 1_3:+64825984 None:intergenic
CTGCAAGACAGATTACCCTT+TGG 0.463297 1_3:-64827505 Msa0133550:CDS
CACATTTGATATCAAGTACA+TGG 0.464870 1_3:-64825628 Msa0133550:CDS
GGAGGAGGAGGGAGTACCAC+AGG 0.466897 1_3:-64827148 Msa0133550:CDS
CATGACATAACATCAAATCT+TGG 0.469302 1_3:-64825501 Msa0133550:CDS
AGCAATGCTCGTTAAGCAAT+AGG 0.471004 1_3:-64826385 Msa0133550:CDS
GCGTTTGATTTGAATTCTCT+TGG 0.473199 1_3:-64826470 Msa0133550:CDS
CTCTTTGAACTGTGGCATTG+TGG 0.474442 1_3:-64825694 Msa0133550:CDS
TTAAATCAGATTTGCAATGA+AGG 0.476823 1_3:-64827858 Msa0133550:intron
CACCTGTGAGGAATGGTAAT+CGG 0.477678 1_3:-64828751 Msa0133550:CDS
CAAACGCTCCTTCAGCGCCT+TGG 0.478043 1_3:+64826486 None:intergenic
CATGAACAGAAGATGCTGTT+GGG 0.478576 1_3:-64827363 Msa0133550:CDS
ATTATTGAAGCAACTGATGA+AGG 0.480520 1_3:-64827255 Msa0133550:CDS
CCTTCGTTGCAGTCATGTAT+TGG 0.482068 1_3:-64828464 Msa0133550:CDS
GGAGAGAACGATGGAACTCT+AGG 0.486383 1_3:-64828626 Msa0133550:CDS
GTAATCTGTCTTGCAGAACT+TGG 0.486621 1_3:+64827512 None:intergenic
GGTGTTGAACTCGAGGAAAA+TGG 0.487027 1_3:-64827288 Msa0133550:CDS
AGAACATTGGGAGACCATTC+TGG 0.493005 1_3:+64828572 None:intergenic
TAAATCAGATTTGCAATGAA+GGG 0.493978 1_3:-64827857 Msa0133550:intron
GTCCTTGATCCACATAGTAA+TGG 0.494034 1_3:-64828698 Msa0133550:CDS
TTCAGCAGAAACTACCAGAA+TGG 0.494743 1_3:-64828586 Msa0133550:CDS
ATTAGAATAGTACAGAACAT+TGG 0.496307 1_3:+64828559 None:intergenic
CCTACAGGGAACCCATGTTT+GGG 0.498512 1_3:+64827764 None:intergenic
TGTAATGTTGAGCATGATCT+CGG 0.498840 1_3:+64828522 None:intergenic
TTTCCACGTTTCCTCTCTGA+GGG 0.500087 1_3:+64827045 None:intergenic
TGAACTGAATGTATTGGCTC+AGG 0.500170 1_3:-64828780 Msa0133550:CDS
ACATGGACGATGATAATGAA+TGG 0.500704 1_3:-64825611 Msa0133550:CDS
CATATAGAGAAGATATCATA+AGG 0.502450 1_3:-64825725 Msa0133550:CDS
CCACCAATAGAAAATTTGGA+TGG 0.502580 1_3:-64828860 Msa0133550:CDS
TTGAGCAATAGGAATAGATT+CGG 0.502794 1_3:+64827218 None:intergenic
AAAGTCCATAGAGGAGAAGA+AGG 0.508706 1_3:+64829679 None:intergenic
TGGCATGAACCATGAGAAGT+AGG 0.511685 1_3:+64826149 None:intergenic
AAAGAAGTGATTAATGGTAA+AGG 0.511717 1_3:-64826248 Msa0133550:CDS
ATGTATGTTTCGAGATCATC+CGG 0.512068 1_3:-64825552 Msa0133550:CDS
CAAAGGAAATGAAAACAAAT+GGG 0.512380 1_3:+64829955 None:intergenic
TTGATCCGATGTCTACCTTA+GGG 0.513112 1_3:-64827086 Msa0133550:CDS
TTACAACGTTCGTGGAACCT+TGG 0.514560 1_3:-64828504 Msa0133550:CDS
TCTTTCATCTGAGGCTCTGA+CGG 0.515877 1_3:+64826362 None:intergenic
TCATGAACAGAAGATGCTGT+TGG 0.516414 1_3:-64827364 Msa0133550:CDS
TGCAACGAAGGTTCAAATAC+AGG 0.517092 1_3:+64828476 None:intergenic
CAAAACACTCCTATGCCTAC+AGG 0.518113 1_3:+64827749 None:intergenic
CTATCACATTGTCGGGCATA+CGG 0.518485 1_3:+64825991 None:intergenic
GCTTAACGAGCATTGCTGGC+TGG 0.519778 1_3:+64826391 None:intergenic
TCGGGCATACGGTGAGAAGT+TGG 0.519816 1_3:+64826002 None:intergenic
ATTTACCTCTAGCCCAAACA+TGG 0.520347 1_3:-64827776 Msa0133550:CDS
GGAACCCATGTTTGGGCTAG+AGG 0.520691 1_3:+64827771 None:intergenic
AACAAACATACAGATTGTAA+TGG 0.521216 1_3:-64826309 Msa0133550:CDS
GAATTGTTCAGTCCATATGT+TGG 0.521476 1_3:-64825233 Msa0133550:three_prime_UTR
GTGTAGAACAATTTCAGCAA+AGG 0.522430 1_3:+64829938 None:intergenic
GATGCTGCAAAGAGCCTTGG+CGG 0.522654 1_3:-64826964 Msa0133550:intron
AATTCATTCTCTTTCATCTG+AGG 0.523018 1_3:+64826353 None:intergenic
CAGGATCCATCAGAGGTTCA+TGG 0.523226 1_3:-64827129 Msa0133550:CDS
GCTCAACATTACAACGTTCG+TGG 0.526984 1_3:-64828512 Msa0133550:CDS
CTATGTGGATCAAGGACAAA+GGG 0.527734 1_3:+64828704 None:intergenic
GTCGGCTGCATTCCCGACTC+TGG 0.528364 1_3:+64826041 None:intergenic
ATGTTGAGCATGATCTCGGC+GGG 0.529020 1_3:+64828526 None:intergenic
AAAGATGCTGCAAAGAGCCT+TGG 0.531341 1_3:-64826967 Msa0133550:CDS
CATGGACGATGATAATGAAT+GGG 0.531492 1_3:-64825610 Msa0133550:CDS
CGCTTCGTTACTTCAAAGAG+TGG 0.532079 1_3:-64828805 Msa0133550:CDS
GATTCAAAAGTGATAAAGCT+TGG 0.532650 1_3:+64829909 None:intergenic
ATATCAATGCATTGTTTAGG+AGG 0.537877 1_3:+64825813 None:intergenic
GAATCTGTCCAAGGCGCTGA+AGG 0.539465 1_3:-64826494 Msa0133550:CDS
AGCGTATCTGCAGGCAGCAT+GGG 0.541320 1_3:-64826586 Msa0133550:CDS
CCAATACATGACTGCAACGA+AGG 0.542039 1_3:+64828464 None:intergenic
GTCCATTACTATGTGGATCA+AGG 0.542097 1_3:+64828696 None:intergenic
CATGGGTTCCCTGTAGGCAT+AGG 0.542933 1_3:-64827758 Msa0133550:CDS
GAGGTTCATGGTGAAAATGT+AGG 0.543377 1_3:-64827117 Msa0133550:CDS
CTCACCAAATATGGAGGAGG+AGG 0.544347 1_3:-64827166 Msa0133550:CDS
TAAAAGAAACTCAACCTCTA+GGG 0.545210 1_3:+64828373 None:intergenic
AACACGTTTGAGCTTAGATA+GGG 0.545296 1_3:+64826520 None:intergenic
ATCGTAGATGCTCATTTATG+GGG 0.545393 1_3:-64827633 Msa0133550:CDS
CTACAATGAAGCGTATCTGC+AGG 0.545803 1_3:-64826595 Msa0133550:CDS
GAACTTCAAGAGCCGTTTGG+AGG 0.546170 1_3:-64825966 Msa0133550:CDS
GTTTGGAGGATTGCTAATAG+AGG 0.548683 1_3:-64825952 Msa0133550:CDS
GTGGACTGAACTGAATGTAT+TGG 0.548852 1_3:-64828786 Msa0133550:CDS
GGAGAGTTTAAAGCATTAGT+CGG 0.550784 1_3:+64826023 None:intergenic
ACAACATGGTCAAGGTGTTG+CGG 0.552963 1_3:-64827580 Msa0133550:CDS
GTAATGGAAAATCAATTGCT+AGG 0.555652 1_3:-64826293 Msa0133550:CDS
AGAAGATTGAAACTTGAGGT+TGG 0.556154 1_3:-64825651 Msa0133550:CDS
AAATTCAATAACTGAGAAGC+CGG 0.559695 1_3:-64828924 Msa0133550:CDS
TCTATTAGCAATCCTCCAAA+CGG 0.561122 1_3:+64825954 None:intergenic
AAGCGTATCTGCAGGCAGCA+TGG 0.561590 1_3:-64826587 Msa0133550:CDS
CTCCTCCTCCATATTTGGTG+AGG 0.561991 1_3:+64827167 None:intergenic
AGCACAAACCCTACTTCTCA+TGG 0.568994 1_3:-64826158 Msa0133550:CDS
TGAACAACATGTTGTGTTGA+GGG 0.569993 1_3:-64826069 Msa0133550:CDS
ACATGTTGTTCATTGTTGGA+TGG 0.570109 1_3:+64826080 None:intergenic
TTATTCGGAGTAGAAGGCTC+AGG 0.570221 1_3:+64826416 None:intergenic
GGAGCCAGATGTGATGAACC+TGG 0.570260 1_3:+64825834 None:intergenic
TCTATTGGTGGCAAAAGGGG+TGG 0.571210 1_3:+64828872 None:intergenic
ATGGTCAAGGTGTTGCGGGG+AGG 0.571632 1_3:-64827575 Msa0133550:CDS
CGGAGGAAGCAACATAATCC+GGG 0.572590 1_3:-64825532 Msa0133550:CDS
TTCCAGAAGATTGAAACTTG+AGG 0.573036 1_3:-64825655 Msa0133550:CDS
TTCAAATACAGGCAAAGCCA+AGG 0.574356 1_3:+64828487 None:intergenic
ATGAGAGCATAATGAACCAA+AGG 0.574665 1_3:+64827489 None:intergenic
CCCAAACATGGGTTCCCTGT+AGG 0.575392 1_3:-64827764 Msa0133550:CDS
AAAATACCTGAGTGAATGGA+TGG 0.576234 1_3:+64828155 None:intergenic
TCACTCCCCTGAACTCTCAC+AGG 0.578779 1_3:+64825473 None:intergenic
ACCTTGTTAATCTTTCGAGA+TGG 0.579070 1_3:+64826551 None:intergenic
AAAATGGCCTCAGCTACTGA+AGG 0.579468 1_3:+64825894 None:intergenic
TTATGTCATGCACCAAAACC+CGG 0.579981 1_3:+64825514 None:intergenic
TGAGAGCATAATGAACCAAA+GGG 0.580200 1_3:+64827490 None:intergenic
GTTGAGGGGATCGCCAGAGT+CGG 0.581271 1_3:-64826054 Msa0133550:CDS
TTTGGACCATCCATTCACTC+AGG 0.581838 1_3:-64828161 Msa0133550:intron
CTCAGGTTTGGGCACCTGTG+AGG 0.583880 1_3:-64828763 Msa0133550:CDS
TGCCTCACCAAATATGGAGG+AGG 0.587748 1_3:-64827169 Msa0133550:CDS
AAACATACATGCACTCCTGA+AGG 0.588299 1_3:+64825565 None:intergenic
GTTTGGGCACCTGTGAGGAA+TGG 0.588324 1_3:-64828758 Msa0133550:CDS
GACATGTGATCCAAAGGCCA+TGG 0.591421 1_3:+64829754 None:intergenic
AAAACACTCCTATGCCTACA+GGG 0.592526 1_3:+64827750 None:intergenic
ACTTCTCATGGTTCATGCCA+CGG 0.596610 1_3:-64826146 Msa0133550:CDS
AAAATCAATTGCTAGGAGGA+AGG 0.596853 1_3:-64826286 Msa0133550:CDS
TATGGTTGGAATTTCAATTG+GGG 0.600606 1_3:+64826118 None:intergenic
TTATTCCCTAAGGTAGACAT+CGG 0.604395 1_3:+64827081 None:intergenic
TGCTGCTGGTGTTGAACTCG+AGG 0.610461 1_3:-64827295 Msa0133550:CDS
CGTGTTATTGAATCTGTCCA+AGG 0.611341 1_3:-64826503 Msa0133550:CDS
GTTTGAGCTTAGATAGGGAA+CGG 0.611978 1_3:+64826525 None:intergenic
GGCAGCATGGGATATCTCGT+TGG 0.612803 1_3:-64826574 Msa0133550:CDS
TTTAGGGTCTCTTTGAACTG+TGG 0.613295 1_3:-64825702 Msa0133550:CDS
TCATGAAATTCAGTAATCCC+AGG 0.614579 1_3:+64827381 None:intergenic
ATGGTTGGAATTTCAATTGG+GGG 0.615940 1_3:+64826119 None:intergenic
CACAGAAAACATGTACATCA+GGG 0.616371 1_3:+64828652 None:intergenic
ATAAAGGACATGTGATCCAA+AGG 0.617226 1_3:+64829748 None:intergenic
GACTATTCAGGAAATTGGAA+AGG 0.619669 1_3:-64826222 Msa0133550:CDS
ATCTAGATTTAGAAACACCA+TGG 0.622079 1_3:-64829771 Msa0133550:CDS
CCATCAGTAAAAGTCCATAG+AGG 0.625976 1_3:+64829670 None:intergenic
AGAGTATGAACGTACCGCCA+AGG 0.629334 1_3:+64826950 None:intergenic
TACCGATTACCATTCCTCAC+AGG 0.629926 1_3:+64828749 None:intergenic
ACTATGTGGATCAAGGACAA+AGG 0.631383 1_3:+64828703 None:intergenic
AAAGATTAACTATGCTCCTG+AGG 0.633444 1_3:-64828414 Msa0133550:CDS
TTTGTGCCCTTCAGTAGCTG+AGG 0.634116 1_3:-64825901 Msa0133550:CDS
TTCAATAACTGAGAAGCCGG+TGG 0.635214 1_3:-64828921 Msa0133550:CDS
GGCATGAACCATGAGAAGTA+GGG 0.635585 1_3:+64826150 None:intergenic
ACATACAAGAGAAGATCTTG+TGG 0.635928 1_3:+64829608 None:intergenic
AGATACGCTTCATTGTAGTA+GGG 0.641314 1_3:+64826600 None:intergenic
AGTGTGCATGTCTACAACTG+AGG 0.643299 1_3:-64827667 Msa0133550:CDS
TGATTGAGTCCATTACTATG+TGG 0.646033 1_3:+64828689 None:intergenic
TCATTGTTGGATGGAATGAA+CGG 0.648544 1_3:+64826089 None:intergenic
CGATGCCTCACCAAATATGG+AGG 0.650921 1_3:-64827172 Msa0133550:CDS
AAAAGGAATAGAACTAGGAG+TGG 0.652567 1_3:-64826194 Msa0133550:CDS
TTTACCTCTAGCCCAAACAT+GGG 0.653751 1_3:-64827775 Msa0133550:CDS
ATGAACAACATGTTGTGTTG+AGG 0.654614 1_3:-64826070 Msa0133550:CDS
TGGACTCAATCAGTATAGAA+CGG 0.656345 1_3:-64828678 Msa0133550:CDS
AAATGGCCTCAGCTACTGAA+GGG 0.658026 1_3:+64825895 None:intergenic
GGTGAGGCATCGGGTCTAGG+TGG 0.659977 1_3:+64827183 None:intergenic
ATGGAAAATCAATTGCTAGG+AGG 0.664194 1_3:-64826290 Msa0133550:CDS
AAACCCTCAGAGAGGAAACG+TGG 0.667434 1_3:-64827048 Msa0133550:CDS
GTGCATGTCTACAACTGAGG+CGG 0.669875 1_3:-64827664 Msa0133550:CDS
AACATGGTCAAGGTGTTGCG+GGG 0.672343 1_3:-64827578 Msa0133550:CDS
GTCGAACATCACTTACAACA+TGG 0.677843 1_3:-64827594 Msa0133550:CDS
GATCTTAGAGATATTGACAG+TGG 0.683127 1_3:-64827814 Msa0133550:CDS
AAAACATCATTAGAAGAACA+TGG 0.686020 1_3:-64829811 Msa0133550:CDS
GCCATCTCGAAAGATTAACA+AGG 0.686233 1_3:-64826552 Msa0133550:CDS
GATCTGGCTCCAGAAGCTTG+TGG 0.687276 1_3:-64825867 Msa0133550:CDS
AATGTTGAGCATGATCTCGG+CGG 0.687474 1_3:+64828525 None:intergenic
CATCACTTACAACATGGTCA+AGG 0.693887 1_3:-64827588 Msa0133550:CDS
TCTGTGGATGGAGAGAACGA+TGG 0.695263 1_3:-64828635 Msa0133550:CDS
AGTACCACAGGATCCATCAG+AGG 0.699060 1_3:-64827136 Msa0133550:CDS
ACATAAAGAAACCCTCAGAG+AGG 0.705928 1_3:-64827056 Msa0133550:CDS
TGAACCTCTGATGGATCCTG+TGG 0.708138 1_3:+64827132 None:intergenic
AAGCTCCTGTGAGAGTTCAG+GGG 0.712104 1_3:-64825478 Msa0133550:CDS
GGATTGCTAATAGAGGACGC+TGG 0.717922 1_3:-64825945 Msa0133550:CDS
TGTTGAGCATGATCTCGGCG+GGG 0.718991 1_3:+64828527 None:intergenic
GAACAACATGTTGTGTTGAG+GGG 0.732713 1_3:-64826068 Msa0133550:CDS
TGAAATTCAGTAATCCCAGG+AGG 0.744471 1_3:+64827384 None:intergenic
TATGTTTCGAGATCATCCGG+AGG 0.758424 1_3:-64825549 Msa0133550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTAGAGTTTAA+TGG - chr1_3:64827076-64827095 Msa0133550:CDS 10.0%
!! GAATTATAAAATGTTAATAT+TGG + chr1_3:64828349-64828368 None:intergenic 10.0%
!! ATAAACTCATTATACATTAA+GGG + chr1_3:64825800-64825819 None:intergenic 15.0%
!! TATAAACTCATTATACATTA+AGG + chr1_3:64825801-64825820 None:intergenic 15.0%
!!! ATGATTTTTGAGTATTTATA+AGG - chr1_3:64826098-64826117 Msa0133550:CDS 15.0%
!!! AACTGCATTTTAAAAATAAT+TGG - chr1_3:64827178-64827197 Msa0133550:CDS 15.0%
!! TAAAAATAATTGGAAAATAC+TGG - chr1_3:64827188-64827207 Msa0133550:CDS 15.0%
!!! GGTAAAAACATTATTAATTT+TGG - chr1_3:64829827-64829846 Msa0133550:CDS 15.0%
!! ATTCATATGATAAAATAGTT+TGG - chr1_3:64829898-64829917 Msa0133550:five_prime_UTR 15.0%
!! ATAAGAAAACCATAAAACTT+AGG + chr1_3:64826879-64826898 None:intergenic 20.0%
!!! TTTTATGGTTTTCTTATGTT+TGG - chr1_3:64826882-64826901 Msa0133550:intron 20.0%
!!! ATTTTATACCAAGTTTTCAA+TGG - chr1_3:64826936-64826955 Msa0133550:intron 20.0%
!!! TTATTTTTAGAGTTTAATGG+AGG - chr1_3:64827079-64827098 Msa0133550:CDS 20.0%
!!! TTTAAAATGCAGTTACAAAT+AGG + chr1_3:64827172-64827191 None:intergenic 20.0%
!! ATACATGATAAAAACAAATC+AGG + chr1_3:64827245-64827264 None:intergenic 20.0%
! CAAAGGAAATGAAAACAAAT+GGG + chr1_3:64825260-64825279 None:intergenic 25.0%
!!! TTCTGACATTTTTTTTCTCA+AGG + chr1_3:64825345-64825364 None:intergenic 25.0%
!!! TCTAATGATGTTTTTGTCTT+GGG + chr1_3:64825395-64825414 None:intergenic 25.0%
!!! TTCTAATGATGTTTTTGTCT+TGG + chr1_3:64825396-64825415 None:intergenic 25.0%
! AAAACATCATTAGAAGAACA+TGG - chr1_3:64825401-64825420 Msa0133550:three_prime_UTR 25.0%
! GAGATGTTTGAAAACAAAAA+AGG + chr1_3:64825506-64825525 None:intergenic 25.0%
! CAACATTCACAAGTAAAATT+AGG + chr1_3:64825828-64825847 None:intergenic 25.0%
!! CTAATTTTACTTGTGAATGT+TGG - chr1_3:64825826-64825845 Msa0133550:CDS 25.0%
! TAATCTTCAAATACTGTAGT+AGG + chr1_3:64825900-64825919 None:intergenic 25.0%
!! TATCCATCCAAATTTTCTAT+TGG + chr1_3:64826358-64826377 None:intergenic 25.0%
! TTAGAATAGTACAGAACATT+GGG + chr1_3:64826655-64826674 None:intergenic 25.0%
! ATTAGAATAGTACAGAACAT+TGG + chr1_3:64826656-64826675 None:intergenic 25.0%
! AATAAAAATACCTGAGTGAA+TGG + chr1_3:64827064-64827083 None:intergenic 25.0%
! TTATCTAGATATAACAGACT+GGG + chr1_3:64827275-64827294 None:intergenic 25.0%
! ATTATCTAGATATAACAGAC+TGG + chr1_3:64827276-64827295 None:intergenic 25.0%
! TTAAATCAGATTTGCAATGA+AGG - chr1_3:64827354-64827373 Msa0133550:CDS 25.0%
! TAAATCAGATTTGCAATGAA+GGG - chr1_3:64827355-64827374 Msa0133550:CDS 25.0%
! GATTTAATAGATTGAGCAAT+AGG + chr1_3:64828008-64828027 None:intergenic 25.0%
!!! CTTTATGTTTTTATTCCCTA+AGG + chr1_3:64828144-64828163 None:intergenic 25.0%
! AACAAACATACAGATTGTAA+TGG - chr1_3:64828903-64828922 Msa0133550:CDS 25.0%
! AAAGAAGTGATTAATGGTAA+AGG - chr1_3:64828964-64828983 Msa0133550:intron 25.0%
! TTATGGTTGGAATTTCAATT+GGG + chr1_3:64829098-64829117 None:intergenic 25.0%
! TTTATGGTTGGAATTTCAAT+TGG + chr1_3:64829099-64829118 None:intergenic 25.0%
! ATGATATCAATGCATTGTTT+AGG + chr1_3:64829405-64829424 None:intergenic 25.0%
! AATGAAGACTGTAACTATTA+AGG - chr1_3:64829461-64829480 Msa0133550:intron 25.0%
! CATATAGAGAAGATATCATA+AGG - chr1_3:64829487-64829506 Msa0133550:intron 25.0%
! AGAAGATATCATAAGGTTTA+GGG - chr1_3:64829494-64829513 Msa0133550:intron 25.0%
!!! CAGTTTGTTATCTATTGTTT+AGG - chr1_3:64829781-64829800 Msa0133550:CDS 25.0%
!! TTTAGGTTCTTGTAATCTTT+AGG - chr1_3:64829798-64829817 Msa0133550:CDS 25.0%
!!! TTTTTTGATGACACATAACA+TGG - chr1_3:64829922-64829941 Msa0133550:five_prime_UTR 25.0%
GCAAAGGAAATGAAAACAAA+TGG + chr1_3:64825261-64825280 None:intergenic 30.0%
GATTCAAAAGTGATAAAGCT+TGG + chr1_3:64825306-64825325 None:intergenic 30.0%
AAAAAAAATGTCAGAACCTG+AGG - chr1_3:64825349-64825368 Msa0133550:three_prime_UTR 30.0%
ATCTAGATTTAGAAACACCA+TGG - chr1_3:64825441-64825460 Msa0133550:three_prime_UTR 30.0%
GAAAACAAAAAAGGTGACAT+GGG + chr1_3:64825497-64825516 None:intergenic 30.0%
TGAAAACAAAAAAGGTGACA+TGG + chr1_3:64825498-64825517 None:intergenic 30.0%
TGCGTTGTTAATTATGTAGA+AGG - chr1_3:64825931-64825950 Msa0133550:CDS 30.0%
ATGTAGCATGTACTTGTATA+AGG + chr1_3:64826070-64826089 None:intergenic 30.0%
ACTGGATTATGAAAACTTCA+CGG + chr1_3:64826178-64826197 None:intergenic 30.0%
! CATGTATTTTGCAGTTTATG+TGG - chr1_3:64826219-64826238 Msa0133550:CDS 30.0%
!! AACTAAAGCTACTGTTTTTC+AGG - chr1_3:64826259-64826278 Msa0133550:CDS 30.0%
AAATTCAATAACTGAGAAGC+CGG - chr1_3:64826288-64826307 Msa0133550:CDS 30.0%
!! ATTTTCTATTGGTGGCAAAA+GGG + chr1_3:64826347-64826366 None:intergenic 30.0%
!! AATTTTCTATTGGTGGCAAA+AGG + chr1_3:64826348-64826367 None:intergenic 30.0%
TTTGCCACCAATAGAAAATT+TGG - chr1_3:64826348-64826367 Msa0133550:CDS 30.0%
TAAAAGAAACTCAACCTCTA+GGG + chr1_3:64826842-64826861 None:intergenic 30.0%
TTAAAAGAAACTCAACCTCT+AGG + chr1_3:64826843-64826862 None:intergenic 30.0%
! GCAATCTATCCTAAGTTTTA+TGG - chr1_3:64826867-64826886 Msa0133550:intron 30.0%
!! AAAAGTTGTTCGAGTTTTGA+TGG - chr1_3:64827507-64827526 Msa0133550:CDS 30.0%
TAAATGAGCATCTACGATAT+AGG + chr1_3:64827577-64827596 None:intergenic 30.0%
ATATCGTAGATGCTCATTTA+TGG - chr1_3:64827577-64827596 Msa0133550:CDS 30.0%
TATCGTAGATGCTCATTTAT+GGG - chr1_3:64827578-64827597 Msa0133550:CDS 30.0%
TTCATTATGCTCTCATGTTT+GGG - chr1_3:64827730-64827749 Msa0133550:CDS 30.0%
CTGTTTCATTGTTGACAATA+TGG + chr1_3:64827877-64827896 None:intergenic 30.0%
ATTATTGAAGCAACTGATGA+AGG - chr1_3:64827957-64827976 Msa0133550:intron 30.0%
TTGAGCAATAGGAATAGATT+CGG + chr1_3:64827997-64828016 None:intergenic 30.0%
!! TTCTACAACGTTATTTTGCT+GGG - chr1_3:64828216-64828235 Msa0133550:intron 30.0%
!! TTTACAAATTTGCTGCTATC+TGG - chr1_3:64828427-64828446 Msa0133550:CDS 30.0%
CGATTACGTAATACATTCTT+CGG + chr1_3:64828466-64828485 None:intergenic 30.0%
!! TAGCTTTAACACAAACTTCT+TGG - chr1_3:64828566-64828585 Msa0133550:CDS 30.0%
TCAGGAAATGAACTAACAAT+TGG + chr1_3:64828781-64828800 None:intergenic 30.0%
AATTCATTCTCTTTCATCTG+AGG + chr1_3:64828862-64828881 None:intergenic 30.0%
!! GTTTGTTTCTGATACTTTAG+AGG + chr1_3:64828890-64828909 None:intergenic 30.0%
! GTAATGGAAAATCAATTGCT+AGG - chr1_3:64828919-64828938 Msa0133550:CDS 30.0%
CTTGAGAAAGAAGTGATTAA+TGG - chr1_3:64828958-64828977 Msa0133550:intron 30.0%
!!! TCCTAGTTCTATTCCTTTTT+CGG + chr1_3:64829017-64829036 None:intergenic 30.0%
TATGGTTGGAATTTCAATTG+GGG + chr1_3:64829097-64829116 None:intergenic 30.0%
ATATCAATGCATTGTTTAGG+AGG + chr1_3:64829402-64829421 None:intergenic 30.0%
!!! ATTTCTTTTCTAGCTGCAAA+AGG + chr1_3:64829444-64829463 None:intergenic 30.0%
GAGAAGATATCATAAGGTTT+AGG - chr1_3:64829493-64829512 Msa0133550:intron 30.0%
CACATTTGATATCAAGTACA+TGG - chr1_3:64829584-64829603 Msa0133550:intron 30.0%
CATGACATAACATCAAATCT+TGG - chr1_3:64829711-64829730 Msa0133550:CDS 30.0%
! CTTGTAATCTTTAGGAAGAT+AGG - chr1_3:64829806-64829825 Msa0133550:CDS 30.0%
TTTGGATTTCATCCAACATA+TGG + chr1_3:64829994-64830013 None:intergenic 30.0%
GTGTAGAACAATTTCAGCAA+AGG + chr1_3:64825277-64825296 None:intergenic 35.0%
TTTCTCAAGGTTCTGTTTGT+GGG + chr1_3:64825332-64825351 None:intergenic 35.0%
! TTTTCTCAAGGTTCTGTTTG+TGG + chr1_3:64825333-64825352 None:intergenic 35.0%
! AAGTCTTGATTTTCTTCCTC+AGG + chr1_3:64825368-64825387 None:intergenic 35.0%
!! AATGATGTTTTTGTCTTGGG+AGG + chr1_3:64825392-64825411 None:intergenic 35.0%
AGAAGAACATGGTTGTTCTA+TGG - chr1_3:64825412-64825431 Msa0133550:three_prime_UTR 35.0%
ATAAAGGACATGTGATCCAA+AGG + chr1_3:64825467-64825486 None:intergenic 35.0%
! ACTTTTACTGATGGAGAAGA+TGG - chr1_3:64825551-64825570 Msa0133550:CDS 35.0%
ACATACAAGAGAAGATCTTG+TGG + chr1_3:64825607-64825626 None:intergenic 35.0%
CAGCTGTTCAATTTAGAAGA+GGG + chr1_3:64825992-64826011 None:intergenic 35.0%
TCAGCTGTTCAATTTAGAAG+AGG + chr1_3:64825993-64826012 None:intergenic 35.0%
ATTGAACAGCTGAAGTTTCA+TGG - chr1_3:64826000-64826019 Msa0133550:CDS 35.0%
!! TTTTCTATTGGTGGCAAAAG+GGG + chr1_3:64826346-64826365 None:intergenic 35.0%
! CCATCCAAATTTTCTATTGG+TGG + chr1_3:64826355-64826374 None:intergenic 35.0%
CCACCAATAGAAAATTTGGA+TGG - chr1_3:64826352-64826371 Msa0133550:CDS 35.0%
GGATGGATATTGTGTAATCA+AGG - chr1_3:64826369-64826388 Msa0133550:CDS 35.0%
TGATTGAGTCCATTACTATG+TGG + chr1_3:64826526-64826545 None:intergenic 35.0%
TGGACTCAATCAGTATAGAA+CGG - chr1_3:64826534-64826553 Msa0133550:CDS 35.0%
CACAGAAAACATGTACATCA+GGG + chr1_3:64826563-64826582 None:intergenic 35.0%
! ATGTACATGTTTTCTGTGGA+TGG - chr1_3:64826565-64826584 Msa0133550:CDS 35.0%
TGTAATGTTGAGCATGATCT+CGG + chr1_3:64826693-64826712 None:intergenic 35.0%
AAAGATTAACTATGCTCCTG+AGG - chr1_3:64826798-64826817 Msa0133550:intron 35.0%
!!! TTGCAGATTTTTTCAACCTC+AGG + chr1_3:64826817-64826836 None:intergenic 35.0%
AATCTCTGCCATTGAAAACT+TGG + chr1_3:64826947-64826966 None:intergenic 35.0%
! ATTCCTCAATGATCTGCTTT+TGG - chr1_3:64826991-64827010 Msa0133550:CDS 35.0%
AAACCAAAAGCAGATCATTG+AGG + chr1_3:64826997-64827016 None:intergenic 35.0%
AAAATACCTGAGTGAATGGA+TGG + chr1_3:64827060-64827079 None:intergenic 35.0%
GGAAAATACTGGATTCTCAT+TGG - chr1_3:64827199-64827218 Msa0133550:CDS 35.0%
CATTGCCAAGTTATATCTGT+GGG + chr1_3:64827331-64827350 None:intergenic 35.0%
GATCTTAGAGATATTGACAG+TGG - chr1_3:64827398-64827417 Msa0133550:CDS 35.0%
!! AGTTTTGATGGTAGTTGCAT+GGG - chr1_3:64827519-64827538 Msa0133550:CDS 35.0%
ATCGTAGATGCTCATTTATG+GGG - chr1_3:64827579-64827598 Msa0133550:CDS 35.0%
! TGAGAGCATAATGAACCAAA+GGG + chr1_3:64827725-64827744 None:intergenic 35.0%
! ATGAGAGCATAATGAACCAA+AGG + chr1_3:64827726-64827745 None:intergenic 35.0%
GTTCATTATGCTCTCATGTT+TGG - chr1_3:64827729-64827748 Msa0133550:CDS 35.0%
TCATGAAATTCAGTAATCCC+AGG + chr1_3:64827834-64827853 None:intergenic 35.0%
TTATTCCCTAAGGTAGACAT+CGG + chr1_3:64828134-64828153 None:intergenic 35.0%
!! GTTCTACAACGTTATTTTGC+TGG - chr1_3:64828215-64828234 Msa0133550:intron 35.0%
TTTATTAATCTGCTGCTAGC+TGG - chr1_3:64828311-64828330 Msa0133550:intron 35.0%
ACATGCATACTCTACTACAA+TGG - chr1_3:64828380-64828399 Msa0133550:intron 35.0%
AGATACGCTTCATTGTAGTA+GGG + chr1_3:64828615-64828634 None:intergenic 35.0%
ACCTTGTTAATCTTTCGAGA+TGG + chr1_3:64828664-64828683 None:intergenic 35.0%
AACACGTTTGAGCTTAGATA+GGG + chr1_3:64828695-64828714 None:intergenic 35.0%
TAACACGTTTGAGCTTAGAT+AGG + chr1_3:64828696-64828715 None:intergenic 35.0%
!! GCGTTTGATTTGAATTCTCT+TGG - chr1_3:64828742-64828761 Msa0133550:CDS 35.0%
ATGGAAAATCAATTGCTAGG+AGG - chr1_3:64828922-64828941 Msa0133550:CDS 35.0%
AAAATCAATTGCTAGGAGGA+AGG - chr1_3:64828926-64828945 Msa0133550:CDS 35.0%
GACTATTCAGGAAATTGGAA+AGG - chr1_3:64828990-64829009 Msa0133550:intron 35.0%
AAATTGGAAAGGACCGAAAA+AGG - chr1_3:64829001-64829020 Msa0133550:intron 35.0%
ACCGAAAAAGGAATAGAACT+AGG - chr1_3:64829013-64829032 Msa0133550:intron 35.0%
AAAAGGAATAGAACTAGGAG+TGG - chr1_3:64829018-64829037 Msa0133550:intron 35.0%
ATGGTTGGAATTTCAATTGG+GGG + chr1_3:64829096-64829115 None:intergenic 35.0%
! ATGAACGGATCTTTTATGGT+TGG + chr1_3:64829111-64829130 None:intergenic 35.0%
! TGGAATGAACGGATCTTTTA+TGG + chr1_3:64829115-64829134 None:intergenic 35.0%
TCATTGTTGGATGGAATGAA+CGG + chr1_3:64829126-64829145 None:intergenic 35.0%
ACATGTTGTTCATTGTTGGA+TGG + chr1_3:64829135-64829154 None:intergenic 35.0%
CACAACATGTTGTTCATTGT+TGG + chr1_3:64829139-64829158 None:intergenic 35.0%
ATGAACAACATGTTGTGTTG+AGG - chr1_3:64829142-64829161 Msa0133550:intron 35.0%
TGAACAACATGTTGTGTTGA+GGG - chr1_3:64829143-64829162 Msa0133550:intron 35.0%
! GGAGAGTTTAAAGCATTAGT+CGG + chr1_3:64829192-64829211 None:intergenic 35.0%
AAGTTCTGCTATCACATTGT+CGG + chr1_3:64829232-64829251 None:intergenic 35.0%
TCTATTAGCAATCCTCCAAA+CGG + chr1_3:64829261-64829280 None:intergenic 35.0%
TTCCAGAAGATTGAAACTTG+AGG - chr1_3:64829557-64829576 Msa0133550:intron 35.0%
AACCTCAAGTTTCAATCTTC+TGG + chr1_3:64829562-64829581 None:intergenic 35.0%
AGAAGATTGAAACTTGAGGT+TGG - chr1_3:64829561-64829580 Msa0133550:intron 35.0%
! ACATGGACGATGATAATGAA+TGG - chr1_3:64829601-64829620 Msa0133550:intron 35.0%
! CATGGACGATGATAATGAAT+GGG - chr1_3:64829602-64829621 Msa0133550:intron 35.0%
ATGTATGTTTCGAGATCATC+CGG - chr1_3:64829660-64829679 Msa0133550:CDS 35.0%
GAATTGTTCAGTCCATATGT+TGG - chr1_3:64829979-64829998 Msa0133550:five_prime_UTR 35.0%
TTTAGAAACACCATGGCCTT+TGG - chr1_3:64825448-64825467 Msa0133550:three_prime_UTR 40.0%
! TGACATGGGATTGGTGATAA+AGG + chr1_3:64825483-64825502 None:intergenic 40.0%
CAAAAAAGGTGACATGGGAT+TGG + chr1_3:64825492-64825511 None:intergenic 40.0%
ATCAACCTTCTTCTCCTCTA+TGG - chr1_3:64825528-64825547 Msa0133550:CDS 40.0%
AAAGTCCATAGAGGAGAAGA+AGG + chr1_3:64825536-64825555 None:intergenic 40.0%
CCATCAGTAAAAGTCCATAG+AGG + chr1_3:64825545-64825564 None:intergenic 40.0%
! CCTCTATGGACTTTTACTGA+TGG - chr1_3:64825542-64825561 Msa0133550:CDS 40.0%
TTGCCTGGTAATTGCTTTCT+TGG - chr1_3:64826037-64826056 Msa0133550:CDS 40.0%
TGCCTGGTAATTGCTTTCTT+GGG - chr1_3:64826038-64826057 Msa0133550:CDS 40.0%
TAATCCAGTCCAATGTCATG+TGG - chr1_3:64826189-64826208 Msa0133550:CDS 40.0%
TGTTTAGCACCACATGACAT+TGG + chr1_3:64826201-64826220 None:intergenic 40.0%
! GTGGACTGAACTGAATGTAT+TGG - chr1_3:64826426-64826445 Msa0133550:CDS 40.0%
!! TGAACTGAATGTATTGGCTC+AGG - chr1_3:64826432-64826451 Msa0133550:CDS 40.0%
!! TGAATGTATTGGCTCAGGTT+TGG - chr1_3:64826437-64826456 Msa0133550:CDS 40.0%
!! GAATGTATTGGCTCAGGTTT+GGG - chr1_3:64826438-64826457 Msa0133550:CDS 40.0%
CGGTATGTACTTACAACTTC+AGG - chr1_3:64826481-64826500 Msa0133550:CDS 40.0%
CTATGTGGATCAAGGACAAA+GGG + chr1_3:64826511-64826530 None:intergenic 40.0%
ACTATGTGGATCAAGGACAA+AGG + chr1_3:64826512-64826531 None:intergenic 40.0%
GTCCTTGATCCACATAGTAA+TGG - chr1_3:64826514-64826533 Msa0133550:CDS 40.0%
GTCCATTACTATGTGGATCA+AGG + chr1_3:64826519-64826538 None:intergenic 40.0%
CCACAGAAAACATGTACATC+AGG + chr1_3:64826564-64826583 None:intergenic 40.0%
! CCTGATGTACATGTTTTCTG+TGG - chr1_3:64826561-64826580 Msa0133550:CDS 40.0%
TTCAGCAGAAACTACCAGAA+TGG - chr1_3:64826626-64826645 Msa0133550:intron 40.0%
TTCAAATACAGGCAAAGCCA+AGG + chr1_3:64826728-64826747 None:intergenic 40.0%
TGCAACGAAGGTTCAAATAC+AGG + chr1_3:64826739-64826758 None:intergenic 40.0%
AAAAATCTGCAAAGCCCTAG+AGG - chr1_3:64826825-64826844 Msa0133550:intron 40.0%
! TTTGAGGAGCTCAGAGTTTT+TGG - chr1_3:64827033-64827052 Msa0133550:CDS 40.0%
CAAGTGTGAATCATTGTCAC+TGG + chr1_3:64827140-64827159 None:intergenic 40.0%
ACTGGATTCTCATTGGATGT+TGG - chr1_3:64827206-64827225 Msa0133550:CDS 40.0%
TTATATCTGTGGGAATCCAG+GGG + chr1_3:64827321-64827340 None:intergenic 40.0%
GTTATATCTGTGGGAATCCA+GGG + chr1_3:64827322-64827341 None:intergenic 40.0%
AGTTATATCTGTGGGAATCC+AGG + chr1_3:64827323-64827342 None:intergenic 40.0%
GGATTCCCACAGATATAACT+TGG - chr1_3:64827323-64827342 Msa0133550:CDS 40.0%
GCATTGCCAAGTTATATCTG+TGG + chr1_3:64827332-64827351 None:intergenic 40.0%
! AGGGCGTCAAAATGCATTAT+CGG - chr1_3:64827374-64827393 Msa0133550:CDS 40.0%
ATTTACCTCTAGCCCAAACA+TGG - chr1_3:64827436-64827455 Msa0133550:CDS 40.0%
TTTACCTCTAGCCCAAACAT+GGG - chr1_3:64827437-64827456 Msa0133550:CDS 40.0%
AAAACACTCCTATGCCTACA+GGG + chr1_3:64827465-64827484 None:intergenic 40.0%
!! GAGTTTTGATGGTAGTTGCA+TGG - chr1_3:64827518-64827537 Msa0133550:CDS 40.0%
!! GTTTTGATGGTAGTTGCATG+GGG - chr1_3:64827520-64827539 Msa0133550:CDS 40.0%
GTCGAACATCACTTACAACA+TGG - chr1_3:64827618-64827637 Msa0133550:CDS 40.0%
CATCACTTACAACATGGTCA+AGG - chr1_3:64827624-64827643 Msa0133550:CDS 40.0%
GTAATCTGTCTTGCAGAACT+TGG + chr1_3:64827703-64827722 None:intergenic 40.0%
!! GCTGTTTTGCAATCTGTTTG+CGG - chr1_3:64827760-64827779 Msa0133550:CDS 40.0%
! TGTTTGCGGAGTTTTCATAC+AGG - chr1_3:64827774-64827793 Msa0133550:CDS 40.0%
!!! TTAGAGTTTTTTCTGCCTCC+TGG - chr1_3:64827813-64827832 Msa0133550:CDS 40.0%
!!! TAGAGTTTTTTCTGCCTCCT+GGG - chr1_3:64827814-64827833 Msa0133550:CDS 40.0%
TGAAATTCAGTAATCCCAGG+AGG + chr1_3:64827831-64827850 None:intergenic 40.0%
TCATGAACAGAAGATGCTGT+TGG - chr1_3:64827848-64827867 Msa0133550:CDS 40.0%
CATGAACAGAAGATGCTGTT+GGG - chr1_3:64827849-64827868 Msa0133550:CDS 40.0%
! TTTTCACCATGAACCTCTGA+TGG + chr1_3:64828092-64828111 None:intergenic 40.0%
GAGGTTCATGGTGAAAATGT+AGG - chr1_3:64828095-64828114 Msa0133550:intron 40.0%
TTGATCCGATGTCTACCTTA+GGG - chr1_3:64828126-64828145 Msa0133550:intron 40.0%
ACATAAAGAAACCCTCAGAG+AGG - chr1_3:64828156-64828175 Msa0133550:intron 40.0%
! CTACAATGGAGTGCATCTTT+TGG - chr1_3:64828394-64828413 Msa0133550:CDS 40.0%
CAGATACGCTTCATTGTAGT+AGG + chr1_3:64828616-64828635 None:intergenic 40.0%
GCCATCTCGAAAGATTAACA+AGG - chr1_3:64828660-64828679 Msa0133550:CDS 40.0%
GTTTGAGCTTAGATAGGGAA+CGG + chr1_3:64828690-64828709 None:intergenic 40.0%
! CGTGTTATTGAATCTGTCCA+AGG - chr1_3:64828709-64828728 Msa0133550:CDS 40.0%
! TATTGCTTAACGAGCATTGC+TGG + chr1_3:64828828-64828847 None:intergenic 40.0%
AGCAATGCTCGTTAAGCAAT+AGG - chr1_3:64828827-64828846 Msa0133550:CDS 40.0%
GAACAACATGTTGTGTTGAG+GGG - chr1_3:64829144-64829163 Msa0133550:intron 40.0%
AGTTCTGCTATCACATTGTC+GGG + chr1_3:64829231-64829250 None:intergenic 40.0%
GTTTGGAGGATTGCTAATAG+AGG - chr1_3:64829260-64829279 Msa0133550:intron 40.0%
AAGTTGTTACCACAAGCTTC+TGG + chr1_3:64829357-64829376 None:intergenic 40.0%
! TTTAGGGTCTCTTTGAACTG+TGG - chr1_3:64829510-64829529 Msa0133550:intron 40.0%
AAACATACATGCACTCCTGA+AGG + chr1_3:64829650-64829669 None:intergenic 40.0%
! AAGCAACATAATCCGGGTTT+TGG - chr1_3:64829686-64829705 Msa0133550:CDS 40.0%
TTATGTCATGCACCAAAACC+CGG + chr1_3:64829701-64829720 None:intergenic 40.0%
GCTGAAGTTTCATGGCTTCA+TGG - chr1_3:64826008-64826027 Msa0133550:CDS 45.0%
AGCCCAAGAAAGCAATTACC+AGG + chr1_3:64826043-64826062 None:intergenic 45.0%
TTCAATAACTGAGAAGCCGG+TGG - chr1_3:64826291-64826310 Msa0133550:CDS 45.0%
TTGTTGTCGTCTTTCTCCAC+CGG + chr1_3:64826310-64826329 None:intergenic 45.0%
CGCTTCGTTACTTCAAAGAG+TGG - chr1_3:64826407-64826426 Msa0133550:CDS 45.0%
CACCTGTGAGGAATGGTAAT+CGG - chr1_3:64826461-64826480 Msa0133550:CDS 45.0%
! TACCGATTACCATTCCTCAC+AGG + chr1_3:64826466-64826485 None:intergenic 45.0%
TTCTGCTGAAAAACTCGACC+AGG + chr1_3:64826616-64826635 None:intergenic 45.0%
AGAACATTGGGAGACCATTC+TGG + chr1_3:64826643-64826662 None:intergenic 45.0%
AATGTTGAGCATGATCTCGG+CGG + chr1_3:64826690-64826709 None:intergenic 45.0%
GCTCAACATTACAACGTTCG+TGG - chr1_3:64826700-64826719 Msa0133550:intron 45.0%
TTACAACGTTCGTGGAACCT+TGG - chr1_3:64826708-64826727 Msa0133550:intron 45.0%
CCAATACATGACTGCAACGA+AGG + chr1_3:64826751-64826770 None:intergenic 45.0%
CCTTCGTTGCAGTCATGTAT+TGG - chr1_3:64826748-64826767 Msa0133550:intron 45.0%
!!! TCTGCTTTTGGTTTCCTTGC+AGG - chr1_3:64827003-64827022 Msa0133550:CDS 45.0%
CCTCAAATTTACTGCCTGCA+AGG + chr1_3:64827020-64827039 None:intergenic 45.0%
CCTTGCAGGCAGTAAATTTG+AGG - chr1_3:64827017-64827036 Msa0133550:CDS 45.0%
TTTGGACCATCCATTCACTC+AGG - chr1_3:64827051-64827070 Msa0133550:CDS 45.0%
ATTGTTCTATCGCTTACCCC+TGG - chr1_3:64827302-64827321 Msa0133550:CDS 45.0%
CAAAACACTCCTATGCCTAC+AGG + chr1_3:64827466-64827485 None:intergenic 45.0%
!!! CTGTAGGCATAGGAGTGTTT+TGG - chr1_3:64827464-64827483 Msa0133550:CDS 45.0%
!!! CATAGGAGTGTTTTGGCTCA+TGG - chr1_3:64827471-64827490 Msa0133550:CDS 45.0%
AGTGTGCATGTCTACAACTG+AGG - chr1_3:64827545-64827564 Msa0133550:CDS 45.0%
!! ACAACATGGTCAAGGTGTTG+CGG - chr1_3:64827632-64827651 Msa0133550:CDS 45.0%
CTGCAAGACAGATTACCCTT+TGG - chr1_3:64827707-64827726 Msa0133550:CDS 45.0%
CAGAGTCTTAACATTGCTGC+TGG - chr1_3:64827903-64827922 Msa0133550:intron 45.0%
! GGTGTTGAACTCGAGGAAAA+TGG - chr1_3:64827924-64827943 Msa0133550:intron 45.0%
! TCCATATTTGGTGAGGCATC+GGG + chr1_3:64828041-64828060 None:intergenic 45.0%
! CTCCATATTTGGTGAGGCAT+CGG + chr1_3:64828042-64828061 None:intergenic 45.0%
GTTGATCCGATGTCTACCTT+AGG - chr1_3:64828125-64828144 Msa0133550:intron 45.0%
TTTCCACGTTTCCTCTCTGA+GGG + chr1_3:64828170-64828189 None:intergenic 45.0%
! TTTTCCACGTTTCCTCTCTG+AGG + chr1_3:64828171-64828190 None:intergenic 45.0%
AAAGATGCTGCAAAGAGCCT+TGG - chr1_3:64828245-64828264 Msa0133550:intron 45.0%
CTACAATGAAGCGTATCTGC+AGG - chr1_3:64828617-64828636 Msa0133550:CDS 45.0%
TTATTCGGAGTAGAAGGCTC+AGG + chr1_3:64828799-64828818 None:intergenic 45.0%
CTGGACTTATTCGGAGTAGA+AGG + chr1_3:64828805-64828824 None:intergenic 45.0%
! CATTGCTGGCTGGACTTATT+CGG + chr1_3:64828814-64828833 None:intergenic 45.0%
! TCTTTCATCTGAGGCTCTGA+CGG + chr1_3:64828853-64828872 None:intergenic 45.0%
! TGGTAAAGGCGTGACTATTC+AGG - chr1_3:64828978-64828997 Msa0133550:intron 45.0%
GGCGTGACTATTCAGGAAAT+TGG - chr1_3:64828985-64829004 Msa0133550:intron 45.0%
AGCACAAACCCTACTTCTCA+TGG - chr1_3:64829054-64829073 Msa0133550:intron 45.0%
GGCATGAACCATGAGAAGTA+GGG + chr1_3:64829065-64829084 None:intergenic 45.0%
TGGCATGAACCATGAGAAGT+AGG + chr1_3:64829066-64829085 None:intergenic 45.0%
ACTTCTCATGGTTCATGCCA+CGG - chr1_3:64829066-64829085 Msa0133550:intron 45.0%
CTATCACATTGTCGGGCATA+CGG + chr1_3:64829224-64829243 None:intergenic 45.0%
AAATGGCCTCAGCTACTGAA+GGG + chr1_3:64829320-64829339 None:intergenic 45.0%
AAAATGGCCTCAGCTACTGA+AGG + chr1_3:64829321-64829340 None:intergenic 45.0%
! TTCAGTAGCTGAGGCCATTT+TGG - chr1_3:64829320-64829339 Msa0133550:intron 45.0%
GCTTGTGGTAACAACTTTCC+AGG - chr1_3:64829360-64829379 Msa0133550:intron 45.0%
CTTTCCAGGTTCATCACATC+TGG - chr1_3:64829374-64829393 Msa0133550:intron 45.0%
CTCTTTGAACTGTGGCATTG+TGG - chr1_3:64829518-64829537 Msa0133550:intron 45.0%
TATGTTTCGAGATCATCCGG+AGG - chr1_3:64829663-64829682 Msa0133550:CDS 45.0%
GACATGTGATCCAAAGGCCA+TGG + chr1_3:64825461-64825480 None:intergenic 50.0%
AGCACCACATGACATTGGAC+TGG + chr1_3:64826196-64826215 None:intergenic 50.0%
! TCTATTGGTGGCAAAAGGGG+TGG + chr1_3:64826343-64826362 None:intergenic 50.0%
TCTGTGGATGGAGAGAACGA+TGG - chr1_3:64826577-64826596 Msa0133550:CDS 50.0%
GGAGAGAACGATGGAACTCT+AGG - chr1_3:64826586-64826605 Msa0133550:CDS 50.0%
!! GATGGAACTCTAGGACTTCC+TGG - chr1_3:64826595-64826614 Msa0133550:CDS 50.0%
ATGTTGAGCATGATCTCGGC+GGG + chr1_3:64826689-64826708 None:intergenic 50.0%
CCTACAGGGAACCCATGTTT+GGG + chr1_3:64827451-64827470 None:intergenic 50.0%
!!! AGGAGTGTTTTGGCTCATGG+TGG - chr1_3:64827474-64827493 Msa0133550:CDS 50.0%
!!! AGTGTTTTGGCTCATGGTGG+CGG - chr1_3:64827477-64827496 Msa0133550:CDS 50.0%
GTGCATGTCTACAACTGAGG+CGG - chr1_3:64827548-64827567 Msa0133550:CDS 50.0%
!! CAACATGGTCAAGGTGTTGC+GGG - chr1_3:64827633-64827652 Msa0133550:CDS 50.0%
!! AACATGGTCAAGGTGTTGCG+GGG - chr1_3:64827634-64827653 Msa0133550:CDS 50.0%
ACCCGATGCCTCACCAAATA+TGG - chr1_3:64828037-64828056 Msa0133550:intron 50.0%
CGATGCCTCACCAAATATGG+AGG - chr1_3:64828040-64828059 Msa0133550:intron 50.0%
TGCCTCACCAAATATGGAGG+AGG - chr1_3:64828043-64828062 Msa0133550:intron 50.0%
! CTCCTCCTCCATATTTGGTG+AGG + chr1_3:64828048-64828067 None:intergenic 50.0%
CTCACCAAATATGGAGGAGG+AGG - chr1_3:64828046-64828065 Msa0133550:intron 50.0%
ACCAAATATGGAGGAGGAGG+AGG - chr1_3:64828049-64828068 Msa0133550:intron 50.0%
TCCTCCTCCTCCTCCATATT+TGG + chr1_3:64828053-64828072 None:intergenic 50.0%
AAATATGGAGGAGGAGGAGG+AGG - chr1_3:64828052-64828071 Msa0133550:intron 50.0%
AATATGGAGGAGGAGGAGGA+GGG - chr1_3:64828053-64828072 Msa0133550:intron 50.0%
AGTACCACAGGATCCATCAG+AGG - chr1_3:64828076-64828095 Msa0133550:intron 50.0%
! TGAACCTCTGATGGATCCTG+TGG + chr1_3:64828083-64828102 None:intergenic 50.0%
CAGGATCCATCAGAGGTTCA+TGG - chr1_3:64828083-64828102 Msa0133550:intron 50.0%
AAACCCTCAGAGAGGAAACG+TGG - chr1_3:64828164-64828183 Msa0133550:CDS 50.0%
AGAGTATGAACGTACCGCCA+AGG + chr1_3:64828265-64828284 None:intergenic 50.0%
TTTCAATTGGGGGACTACCG+TGG + chr1_3:64829086-64829105 None:intergenic 50.0%
GCAGAACTTCAAGAGCCGTT+TGG - chr1_3:64829243-64829262 Msa0133550:intron 50.0%
GAACTTCAAGAGCCGTTTGG+AGG - chr1_3:64829246-64829265 Msa0133550:intron 50.0%
GGATTGCTAATAGAGGACGC+TGG - chr1_3:64829267-64829286 Msa0133550:intron 50.0%
TTTGTGCCCTTCAGTAGCTG+AGG - chr1_3:64829311-64829330 Msa0133550:intron 50.0%
!! AGTAGCTGAGGCCATTTTGG+AGG - chr1_3:64829323-64829342 Msa0133550:intron 50.0%
!! TGAGGCCATTTTGGAGGATC+TGG - chr1_3:64829329-64829348 Msa0133550:intron 50.0%
TGGAGCCAGATCCTCCAAAA+TGG + chr1_3:64829337-64829356 None:intergenic 50.0%
AGCATGTGATGCAGACCTTC+AGG - chr1_3:64829632-64829651 Msa0133550:CDS 50.0%
! CCGGATTATGTTGCTTCCTC+CGG + chr1_3:64829682-64829701 None:intergenic 50.0%
CCGGAGGAAGCAACATAATC+CGG - chr1_3:64829679-64829698 Msa0133550:CDS 50.0%
CGGAGGAAGCAACATAATCC+GGG - chr1_3:64829680-64829699 Msa0133550:CDS 50.0%
GAAGCTCCTGTGAGAGTTCA+GGG - chr1_3:64829733-64829752 Msa0133550:CDS 50.0%
AAGCTCCTGTGAGAGTTCAG+GGG - chr1_3:64829734-64829753 Msa0133550:CDS 50.0%
GCTTCATGGCTAGAGTTGCC+TGG - chr1_3:64826022-64826041 Msa0133550:CDS 55.0%
GTTTGGGCACCTGTGAGGAA+TGG - chr1_3:64826454-64826473 Msa0133550:CDS 55.0%
TGTTGAGCATGATCTCGGCG+GGG + chr1_3:64826688-64826707 None:intergenic 55.0%
! GGAACCCATGTTTGGGCTAG+AGG + chr1_3:64827444-64827463 None:intergenic 55.0%
CCCAAACATGGGTTCCCTGT+AGG - chr1_3:64827448-64827467 Msa0133550:CDS 55.0%
GCCTACAGGGAACCCATGTT+TGG + chr1_3:64827452-64827471 None:intergenic 55.0%
CATGGGTTCCCTGTAGGCAT+AGG - chr1_3:64827454-64827473 Msa0133550:CDS 55.0%
! TGCTGCTGGTGTTGAACTCG+AGG - chr1_3:64827917-64827936 Msa0133550:intron 55.0%
!! TTTGGTGAGGCATCGGGTCT+AGG + chr1_3:64828035-64828054 None:intergenic 55.0%
GATGCTGCAAAGAGCCTTGG+CGG - chr1_3:64828248-64828267 Msa0133550:intron 55.0%
AAGCGTATCTGCAGGCAGCA+TGG - chr1_3:64828625-64828644 Msa0133550:CDS 55.0%
AGCGTATCTGCAGGCAGCAT+GGG - chr1_3:64828626-64828645 Msa0133550:CDS 55.0%
GGCAGCATGGGATATCTCGT+TGG - chr1_3:64828638-64828657 Msa0133550:CDS 55.0%
!! GAATCTGTCCAAGGCGCTGA+AGG - chr1_3:64828718-64828737 Msa0133550:CDS 55.0%
! GCTTAACGAGCATTGCTGGC+TGG + chr1_3:64828824-64828843 None:intergenic 55.0%
TCGGGCATACGGTGAGAAGT+TGG + chr1_3:64829213-64829232 None:intergenic 55.0%
! GATCTGGCTCCAGAAGCTTG+TGG - chr1_3:64829345-64829364 Msa0133550:intron 55.0%
GGAGCCAGATGTGATGAACC+TGG + chr1_3:64829381-64829400 None:intergenic 55.0%
GGAAGCTCCTGTGAGAGTTC+AGG - chr1_3:64829732-64829751 Msa0133550:CDS 55.0%
TCACTCCCCTGAACTCTCAC+AGG + chr1_3:64829742-64829761 None:intergenic 55.0%
CTCAGGTTTGGGCACCTGTG+AGG - chr1_3:64826449-64826468 Msa0133550:CDS 60.0%
!! ATGGTCAAGGTGTTGCGGGG+AGG - chr1_3:64827637-64827656 Msa0133550:CDS 60.0%
!! TGGTCAAGGTGTTGCGGGGA+GGG - chr1_3:64827638-64827657 Msa0133550:CDS 60.0%
CAAACGCTCCTTCAGCGCCT+TGG + chr1_3:64828729-64828748 None:intergenic 60.0%
GTTGAGGGGATCGCCAGAGT+CGG - chr1_3:64829158-64829177 Msa0133550:intron 60.0%
TTGAGGGGATCGCCAGAGTC+GGG - chr1_3:64829159-64829178 Msa0133550:intron 60.0%
!! GGTGAGGCATCGGGTCTAGG+TGG + chr1_3:64828032-64828051 None:intergenic 65.0%
!! GGAGGAGGAGGGAGTACCAC+AGG - chr1_3:64828064-64828083 Msa0133550:intron 65.0%
GTCGGCTGCATTCCCGACTC+TGG + chr1_3:64829174-64829193 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 64825221 64830013 64825221 ID=Msa0133550;Name=Msa0133550
chr1_3 mRNA 64825221 64830013 64825221 ID=Msa0133550-mRNA-1;Parent=Msa0133550;Name=Msa0133550-mRNA-1;_AED=0.05;_eAED=0.05;_QI=135|1|1|1|1|1|5|252|979
chr1_3 exon 64825221 64826626 64825221 ID=Msa0133550-mRNA-1:exon:21914;Parent=Msa0133550-mRNA-1
chr1_3 exon 64826965 64827871 64826965 ID=Msa0133550-mRNA-1:exon:21913;Parent=Msa0133550-mRNA-1
chr1_3 exon 64828162 64828209 64828162 ID=Msa0133550-mRNA-1:exon:21912;Parent=Msa0133550-mRNA-1
chr1_3 exon 64828388 64828953 64828388 ID=Msa0133550-mRNA-1:exon:21911;Parent=Msa0133550-mRNA-1
chr1_3 exon 64829614 64830013 64829614 ID=Msa0133550-mRNA-1:exon:21910;Parent=Msa0133550-mRNA-1
chr1_3 five_prime_UTR 64829879 64830013 64829879 ID=Msa0133550-mRNA-1:five_prime_utr;Parent=Msa0133550-mRNA-1
chr1_3 CDS 64829614 64829878 64829614 ID=Msa0133550-mRNA-1:cds;Parent=Msa0133550-mRNA-1
chr1_3 CDS 64828388 64828953 64828388 ID=Msa0133550-mRNA-1:cds;Parent=Msa0133550-mRNA-1
chr1_3 CDS 64828162 64828209 64828162 ID=Msa0133550-mRNA-1:cds;Parent=Msa0133550-mRNA-1
chr1_3 CDS 64826965 64827871 64826965 ID=Msa0133550-mRNA-1:cds;Parent=Msa0133550-mRNA-1
chr1_3 CDS 64825473 64826626 64825473 ID=Msa0133550-mRNA-1:cds;Parent=Msa0133550-mRNA-1
chr1_3 three_prime_UTR 64825221 64825472 64825221 ID=Msa0133550-mRNA-1:three_prime_utr;Parent=Msa0133550-mRNA-1
Gene Sequence

>Msa0133550

ATGTCAGAACCTGAGGAAGAAAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGATCTAGATTTAGAAACACCATGGCCTTTGGATCACATGTCCTTTATCACCAATCCCATGTCACCTTTTTTGTTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTATGGACTTTTACTGATGGAGAAGATGGCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCCGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGAAAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGTTACTTCAAAGAGTGGACTGAACTGAATGTATTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCACATAGTAATGGACTCAATCAGTATAGAACGGTTTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCATGTATTGGTGTGATAGAGTTGATAATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTGTGCATGTCTACAACTGAGGCGGCAGCCTATATCGTAGATGCTCATTTATGGGGTTTCAGAGAAGCATGTGTCGAACATCACTTACAACATGGTCAAGGTGTTGCGGGGAGGGCGTTTTTGTCTCAAAACATGTGCTTCTGCACAAACATTACCAAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTGCGGAGTTTTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATTACTGAATTTCATGAACAGAAGATGCTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCGTCTTAGAACCGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGAGGAGGAGGAGGGAGTACCACAGGATCCATCAGAGGTTCATGGTGAAAATGTAGGCAGAAGTGTTGATCCGATGTCTACCTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTTTGCCCTACTACAATGAAGCGTATCTGCAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATTAACAAGGTTAACCGTTCCCTATCTAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTTGGTAATAATCAACTTCCAATTGTTAGTTCATTTCCTGAGCCTTCTACTCCGAATAAGTCCAGCCAGCAATGCTCGTTAAGCAATAGGCCGTCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAAAGTATCAGAAACAAACATACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGGTAAAGGCGTGACTATTCAGGAAATTGGAAAGGACCGAAAAAGGAATAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAACCCTACTTCTCATGGTTCATGCCACGGTAGTCCCCCAATTGAAATTCCAACCATAAAAGATCCGTTCATTCCATCCAACAATGAACAACATGTTGTGTTGAGGGGATCGCCAGAGTCGGGAATGCAGCCGACTAATGCTTTAAACTCTCCAACTTCTCACCGTATGCCCGACAATGTGATAGCAGAACTTCAAGAGCCGTTTGGAGGATTGCTAATAGAGGACGCTGGAAGTTCGAAAGATTTGAGAAATTTGTGCCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGTAACAACTTTCCAGGTTCATCACATCTGGCTCCTCCTAAACAATGCATTGATATCATTAATAATTCAGTGACGCCTTTTGCAGCTAGAAAAGAAATGAAGACTGTAACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAGTTTCCAGAAGATTGAAACTTGAGGTTGGCACATTTGATATCAAGTACATGGACGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTTCAGGAGTGCATGTATGTTTCGAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTGGTGCATGACATAACATCAAATCTTGGAAGCTCCTGTGAGAGTTCAGGGGAGTGA
Protein sequence

>Msa0133550

MSEPEEENQDFPPKTKTSLEEHGCSMDFDLDLETPWPLDHMSFITNPMSPFLFSNISDQPSSPLWTFTDGEDGKLAASAFSDCHKIFSCDSNSITEKPVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQHGQGVAGRAFLSQNMCFCTNITKFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFHEQKMLLGSILSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIRLRTESIPIAQSIKSPPRPDASPNMEEEEEGVPQDPSEVHGENVGRSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLGNNQLPIVSSFPEPSTPNKSSQQCSLSNRPSEPQMKENEFDASKVSETNIQIVMENQLLGGRKHSLEKEVINGKGVTIQEIGKDRKRNRTRSGSSEDSTNPTSHGSCHGSPPIEIPTIKDPFIPSNNEQHVVLRGSPESGMQPTNALNSPTSHRMPDNVIAELQEPFGGLLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGNNFPGSSHLAPPKQCIDIINNSVTPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSRRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE*