AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087850 MtrunA17_Chr1g0204741 84.756 328 16 2 1 294 3 330 0.0 557
Msa0087850 MtrunA17_Chr7g0260331 47.917 336 114 7 15 291 26 359 6.58e-89 269
Msa0087850 MtrunA17_Chr3g0135831 67.027 185 58 3 25 207 33 216 4.73e-84 257
Msa0087850 MtrunA17_Chr5g0410881 59.596 198 70 2 25 213 19 215 9.31e-75 237
Msa0087850 MtrunA17_Chr1g0185131 60.106 188 63 3 21 207 15 191 1.32e-71 224
Msa0087850 MtrunA17_Chr4g0039891 60.894 179 61 3 37 207 11 188 2.38e-66 215
Msa0087850 MtrunA17_Chr4g0071051 51.980 202 83 4 10 207 73 264 3.92e-64 207
Msa0087850 MtrunA17_Chr8g0379701 36.170 282 144 5 37 286 11 288 1.26e-49 169
Msa0087850 MtrunA17_Chr6g0467041 48.023 177 82 3 38 211 22 191 1.59e-47 161
Msa0087850 MtrunA17_Chr2g0330821 45.251 179 89 2 32 207 73 245 2.37e-47 162
Msa0087850 MtrunA17_Chr6g0485571 47.619 168 85 2 38 205 11 175 5.44e-47 160
Msa0087850 MtrunA17_Chr8g0392001 51.124 178 75 5 38 205 22 197 6.64e-47 161
Msa0087850 MtrunA17_Chr8g0378061 47.727 176 82 3 39 211 23 191 4.48e-46 161
Msa0087850 MtrunA17_Chr3g0134031 65.049 103 36 0 32 134 18 120 1.17e-41 147
Msa0087850 MtrunA17_Chr2g0284481 44.828 174 83 3 29 190 6 178 2.82e-41 146
Msa0087850 MtrunA17_Chr5g0441531 71.579 95 27 0 36 130 23 117 4.23e-41 142
Msa0087850 MtrunA17_Chr5g0397881 64.894 94 33 0 36 129 22 115 4.28e-38 137
Msa0087850 MtrunA17_Chr6g0472421 62.766 94 35 0 36 129 31 124 1.41e-37 136
Msa0087850 MtrunA17_Chr1g0203601 62.766 94 35 0 36 129 16 109 1.55e-37 135
Msa0087850 MtrunA17_Chr8g0375041 41.916 167 82 2 35 186 6 172 5.55e-37 132
Msa0087850 MtrunA17_Chr5g0402291 36.548 197 111 3 35 218 6 201 2.88e-36 131
Msa0087850 MtrunA17_Chr7g0257331 52.941 119 49 2 29 140 9 127 3.95e-36 129
Msa0087850 MtrunA17_Chr4g0047421 42.331 163 85 3 36 191 31 191 4.45e-33 120
Msa0087850 MtrunA17_Chr1g0179321 67.123 73 24 0 25 97 36 108 1.43e-28 105
Msa0087850 MtrunA17_Chr1g0179311 45.133 113 61 1 95 207 11 122 5.64e-26 105
Msa0087850 MtrunA17_Chr4g0023771 61.194 67 26 0 29 95 6 72 6.57e-21 85.9
Msa0087850 MtrunA17_Chr2g0330841 31.452 124 74 3 98 218 41 156 4.89e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087850 AT3G22830.1 46.814 361 102 7 20 291 43 402 2.04e-98 295
Msa0087850 AT2G26150.1 61.081 185 69 2 25 207 31 214 2.26e-78 242
Msa0087850 AT2G26150.4 61.081 185 69 2 25 207 31 214 2.26e-78 242
Msa0087850 AT3G51910.1 59.218 179 59 2 29 207 20 184 2.12e-71 221
Msa0087850 AT4G17750.1 55.300 217 72 5 14 207 22 236 1.38e-70 226
Msa0087850 AT5G43840.1 57.609 184 65 1 25 208 6 176 1.93e-70 219
Msa0087850 AT1G32330.2 55.072 207 79 3 14 207 11 216 4.29e-70 224
Msa0087850 AT1G32330.1 55.072 207 79 3 14 207 11 216 4.81e-70 224
Msa0087850 AT5G16820.1 58.289 187 70 2 34 213 23 208 3.24e-68 220
Msa0087850 AT5G16820.2 58.289 187 70 2 34 213 23 208 3.24e-68 220
Msa0087850 AT3G63350.1 51.923 208 79 4 16 215 6 200 3.11e-67 211
Msa0087850 AT3G02990.1 59.016 183 68 2 37 213 22 203 5.62e-66 214
Msa0087850 AT5G03720.2 49.490 196 98 1 12 207 29 223 2.09e-61 200
Msa0087850 AT5G03720.1 49.490 196 98 1 12 207 29 223 2.09e-61 200
Msa0087850 AT1G67970.1 51.462 171 79 3 38 205 19 188 4.56e-51 172
Msa0087850 AT4G13980.1 46.707 167 86 1 39 205 24 187 1.17e-45 160
Msa0087850 AT5G54070.1 43.169 183 95 2 31 212 63 237 8.73e-45 155
Msa0087850 AT3G24520.1 47.619 168 66 3 38 205 17 162 2.54e-44 154
Msa0087850 AT2G41690.1 39.706 204 106 4 11 207 23 216 4.19e-42 145
Msa0087850 AT1G46264.1 64.423 104 37 0 29 132 25 128 3.95e-41 145
Msa0087850 AT5G45710.3 38.655 238 131 6 37 270 12 238 4.69e-40 143
Msa0087850 AT5G45710.1 38.655 238 131 6 37 270 12 238 4.69e-40 143
Msa0087850 AT4G18880.1 46.369 179 92 2 30 205 7 184 3.31e-39 142
Msa0087850 AT4G11660.1 60.825 97 38 0 36 132 57 153 3.68e-38 139
Msa0087850 AT4G36990.1 54.464 112 47 1 36 147 12 119 2.76e-36 131
Msa0087850 AT5G62020.1 61.702 94 36 0 36 129 21 114 5.86e-36 131
Msa0087850 AT2G26150.3 54.464 112 48 2 98 207 49 159 5.53e-32 120
Msa0087850 AT2G26150.2 54.464 112 48 2 98 207 49 159 5.53e-32 120
Msa0087850 AT4G18870.1 36.434 129 79 1 22 147 130 258 3.65e-21 91.3
Msa0087850 AT4G18870.1 48.315 89 41 2 39 125 14 99 8.75e-20 87.4
Msa0087850 AT4G19630.1 39.623 106 52 4 34 129 7 110 1.62e-13 66.6
Msa0087850 AT1G77570.1 37.778 90 53 2 39 125 27 116 4.13e-12 63.2

Find 62 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCAAAGCCTCCTATTT+AGG 0.202422 1_2:-68867658 None:intergenic
GGAACAATAGCTTTGTTGTT+TGG 0.274853 1_2:+68866195 Msa0087850:CDS
TAAATTGTAGGGGTTTAAAA+AGG 0.303820 1_2:+68866972 Msa0087850:intron
TTCAAGTTGATTAATTTGAT+TGG 0.327468 1_2:-68867518 None:intergenic
GTTGATGCAGATGTTGAATT+AGG 0.327469 1_2:+68867430 Msa0087850:CDS
GAACAATAGCTTTGTTGTTT+GGG 0.327590 1_2:+68866196 Msa0087850:CDS
TAAGAGATACTGAAGTGTTT+TGG 0.339566 1_2:+68867542 Msa0087850:CDS
CCACAAATCATATAGTTTCA+TGG 0.352549 1_2:+68866165 Msa0087850:CDS
TGCCTCTAGTCCTCCTAAAT+AGG 0.370362 1_2:+68867645 Msa0087850:CDS
ATTAAGTTGCCGGACAAAAC+TGG 0.370804 1_2:-68866276 None:intergenic
CTTGTCTGTCGCGCCTCAAC+CGG 0.383841 1_2:-68867161 None:intergenic
TTGTTGTGCTTGAAGAATCT+AGG 0.383883 1_2:-68866248 None:intergenic
TGTGTTGAGCTGGGAAGGTT+TGG 0.384498 1_2:+68867117 Msa0087850:CDS
CATATAGTTTCATGGAGTAC+TGG 0.392040 1_2:+68866173 Msa0087850:CDS
AAAACAGATGATGAATTTCA+TGG 0.398561 1_2:+68867284 Msa0087850:CDS
TTCTTCTAATGTTCTTCAAA+AGG 0.412252 1_2:-68867050 None:intergenic
CCATGAAACTATATGATTTG+TGG 0.413159 1_2:-68866165 None:intergenic
AGGGAAGGACTTCATGAAAA+TGG 0.418874 1_2:+68866095 Msa0087850:CDS
TCACATAGGTATTAAGTTGC+CGG 0.435323 1_2:-68866286 None:intergenic
TGAAGTCCTTCCCTTGGTTG+AGG 0.441996 1_2:-68866086 None:intergenic
ACATCTGCATCAACATTACT+AGG 0.447700 1_2:-68867421 None:intergenic
TATTGAAGATGTTGATGTAT+TGG 0.457804 1_2:+68867603 Msa0087850:CDS
GCTAATGAGATGTTTCTAAG+AGG 0.461550 1_2:+68867018 Msa0087850:CDS
GGGATGAAGGAGGAGTTTGT+TGG 0.463474 1_2:+68866032 Msa0087850:CDS
ATCTTGAAGCAATGGAAAGA+AGG 0.466935 1_2:+68867238 Msa0087850:CDS
GAATCGAAGTGGACCGGTTG+AGG 0.470687 1_2:+68867148 Msa0087850:CDS
ATGAATATGAATCTTCATCA+TGG 0.483530 1_2:+68866008 None:intergenic
CGTCATGTGTTGAGCTGGGA+AGG 0.490133 1_2:+68867112 Msa0087850:CDS
GCGCGACAGACAAGTTCTAA+TGG 0.493467 1_2:+68867170 Msa0087850:CDS
AAAGGTTGATGCAGATAGGT+GGG 0.494489 1_2:+68866990 Msa0087850:CDS
AGACCCGTCATGTGTTGAGC+TGG 0.495058 1_2:+68867107 Msa0087850:CDS
ATGAAGGAGGAGTTTGTTGG+AGG 0.495698 1_2:+68866035 Msa0087850:CDS
AGGTTCACCAACCACAGAAA+AGG 0.504219 1_2:-68866066 None:intergenic
AGGGAGAAGAATAATAGAAA+AGG 0.505225 1_2:-68866228 None:intergenic
TGTTGTGCTTGAAGAATCTA+GGG 0.511168 1_2:-68866247 None:intergenic
TCTTCATCATGGTGGGATGA+AGG 0.511768 1_2:+68866019 Msa0087850:CDS
TAAAACTCATCTTGAAGCAA+TGG 0.517493 1_2:+68867230 Msa0087850:CDS
ATCAAAGCCTCCTATTTAGG+AGG 0.518160 1_2:-68867655 None:intergenic
ACAAGTTCTAATGGTTGAGT+TGG 0.523658 1_2:+68867179 Msa0087850:CDS
TGGCAAGATTTGTTTAAGGA+GGG 0.525419 1_2:+68867562 Msa0087850:CDS
CTGGGAAGGTTTGGATTAGA+CGG 0.525469 1_2:+68867126 Msa0087850:CDS
TTGGCAAGATTTGTTTAAGG+AGG 0.525683 1_2:+68867561 Msa0087850:CDS
AAAAGGTTGATGCAGATAGG+TGG 0.546223 1_2:+68866989 Msa0087850:CDS
TTCCCAGCTCAACACATGAC+GGG 0.552361 1_2:-68867110 None:intergenic
ATATAGTTTCATGGAGTACT+GGG 0.559738 1_2:+68866174 Msa0087850:CDS
GACCCGTCATGTGTTGAGCT+GGG 0.564277 1_2:+68867108 Msa0087850:CDS
CTTCCCAGCTCAACACATGA+CGG 0.580827 1_2:-68867111 None:intergenic
CTCCTATTTAGGAGGACTAG+AGG 0.581849 1_2:-68867647 None:intergenic
TGAACAACATCAAGATGTTG+AGG 0.592174 1_2:+68867489 Msa0087850:CDS
AGAATAATAGAAAAGGCTTG+AGG 0.598445 1_2:-68866221 None:intergenic
TGGATTAGACGGAATCGAAG+TGG 0.602364 1_2:+68867137 Msa0087850:CDS
GATGTATTGGCTGAGCAACT+TGG 0.605475 1_2:+68867616 Msa0087850:CDS
AATATGAATCTTCATCATGG+TGG 0.612258 1_2:+68866011 None:intergenic
TAGACGGAATCGAAGTGGAC+CGG 0.614296 1_2:+68867142 Msa0087850:CDS
GAAACTATATGATTTGTGGA+AGG 0.623337 1_2:-68866161 None:intergenic
AGAAGGAGAACTATTGACGA+AGG 0.628728 1_2:+68867397 Msa0087850:CDS
GAAGGAGAACTATTGACGAA+GGG 0.637249 1_2:+68867398 Msa0087850:CDS
ATATGAATCTTCATCATGGT+GGG 0.643772 1_2:+68866012 None:intergenic
TCATCATGGTGGGATGAAGG+AGG 0.650270 1_2:+68866022 Msa0087850:CDS
GGTGAACCTCAACCAAGGGA+AGG 0.659511 1_2:+68866080 Msa0087850:CDS
TGGTTGGTGAACCTCAACCA+AGG 0.664718 1_2:+68866075 Msa0087850:CDS
GGTTGGTGAACCTCAACCAA+GGG 0.679182 1_2:+68866076 Msa0087850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTGAAATTAAATTGTA+GGG + chr1_2:68866961-68866980 Msa0087850:intron 10.0%
!!! AAATTTGAAATTAAATTGTA+GGG + chr1_2:68866961-68866980 Msa0087850:intron 10.0%
!!! AACATTTTTGTTTCATTATA+TGG + chr1_2:68866440-68866459 Msa0087850:intron 15.0%
!!! GAAATTTGAAATTAAATTGT+AGG + chr1_2:68866960-68866979 Msa0087850:intron 15.0%
!!! AATTTGAAATTAAATTGTAG+GGG + chr1_2:68866962-68866981 Msa0087850:intron 15.0%
!!! AACATTTTTGTTTCATTATA+TGG + chr1_2:68866440-68866459 Msa0087850:intron 15.0%
!!! GAAATTTGAAATTAAATTGT+AGG + chr1_2:68866960-68866979 Msa0087850:intron 15.0%
!!! AATTTGAAATTAAATTGTAG+GGG + chr1_2:68866962-68866981 Msa0087850:intron 15.0%
!! ATGGAATAATGTAGTAATAA+AGG + chr1_2:68866459-68866478 Msa0087850:intron 20.0%
!!! TAGTAATAAAGGCTATTTTT+GGG + chr1_2:68866470-68866489 Msa0087850:intron 20.0%
!!! TTTGACTTTTCTCTATATTA+GGG - chr1_2:68866587-68866606 None:intergenic 20.0%
!!! TTTTGACTTTTCTCTATATT+AGG - chr1_2:68866588-68866607 None:intergenic 20.0%
!! AAACAAACACTAATTAACAT+TGG - chr1_2:68866894-68866913 None:intergenic 20.0%
!!! AATTTTTTTCTAAGAAGAGA+AGG + chr1_2:68867380-68867399 Msa0087850:intron 20.0%
!!! TTCAAGTTGATTAATTTGAT+TGG - chr1_2:68867521-68867540 None:intergenic 20.0%
!! ATGGAATAATGTAGTAATAA+AGG + chr1_2:68866459-68866478 Msa0087850:intron 20.0%
!!! TAGTAATAAAGGCTATTTTT+GGG + chr1_2:68866470-68866489 Msa0087850:intron 20.0%
!!! TTTGACTTTTCTCTATATTA+GGG - chr1_2:68866587-68866606 None:intergenic 20.0%
!!! TTTTGACTTTTCTCTATATT+AGG - chr1_2:68866588-68866607 None:intergenic 20.0%
!! AAACAAACACTAATTAACAT+TGG - chr1_2:68866894-68866913 None:intergenic 20.0%
!!! AATTTTTTTCTAAGAAGAGA+AGG + chr1_2:68867380-68867399 Msa0087850:intron 20.0%
!!! TTCAAGTTGATTAATTTGAT+TGG - chr1_2:68867521-68867540 None:intergenic 20.0%
!!! CTATATCATATGTTTTTGTG+AGG - chr1_2:68866133-68866152 None:intergenic 25.0%
! TTAAATACTACTACTCACAT+AGG - chr1_2:68866303-68866322 None:intergenic 25.0%
! TATCTCATCAGATTAAACAA+AGG - chr1_2:68866371-68866390 None:intergenic 25.0%
! TTGTTTAATCTGATGAGATA+AGG + chr1_2:68866371-68866390 Msa0087850:intron 25.0%
!!! GTAGTAATAAAGGCTATTTT+TGG + chr1_2:68866469-68866488 Msa0087850:intron 25.0%
!!! ATTGTGTGAGTTATTTTTCT+TGG + chr1_2:68866548-68866567 Msa0087850:intron 25.0%
! AGAGAAAAGTCAAAATGTAT+TGG + chr1_2:68866593-68866612 Msa0087850:intron 25.0%
! AAAAGTCAAAATGTATTGGA+CGG + chr1_2:68866597-68866616 Msa0087850:intron 25.0%
!!! TAGTGTTTGTTTTCATTGAA+TGG + chr1_2:68866902-68866921 Msa0087850:intron 25.0%
!! GTTTTCATTGAATGGAATTA+TGG + chr1_2:68866910-68866929 Msa0087850:intron 25.0%
!!! GCATTTTGATTTGAAAATGA+AGG + chr1_2:68866936-68866955 Msa0087850:intron 25.0%
! TAAATTGTAGGGGTTTAAAA+AGG + chr1_2:68866972-68866991 Msa0087850:intron 25.0%
! TTCTTCTAATGTTCTTCAAA+AGG - chr1_2:68867053-68867072 None:intergenic 25.0%
! AAAACAGATGATGAATTTCA+TGG + chr1_2:68867284-68867303 Msa0087850:CDS 25.0%
! TATTGAAGATGTTGATGTAT+TGG + chr1_2:68867603-68867622 Msa0087850:CDS 25.0%
!!! CTATATCATATGTTTTTGTG+AGG - chr1_2:68866133-68866152 None:intergenic 25.0%
! TTAAATACTACTACTCACAT+AGG - chr1_2:68866303-68866322 None:intergenic 25.0%
! TATCTCATCAGATTAAACAA+AGG - chr1_2:68866371-68866390 None:intergenic 25.0%
! TTGTTTAATCTGATGAGATA+AGG + chr1_2:68866371-68866390 Msa0087850:intron 25.0%
!!! GTAGTAATAAAGGCTATTTT+TGG + chr1_2:68866469-68866488 Msa0087850:intron 25.0%
!!! ATTGTGTGAGTTATTTTTCT+TGG + chr1_2:68866548-68866567 Msa0087850:intron 25.0%
! AGAGAAAAGTCAAAATGTAT+TGG + chr1_2:68866593-68866612 Msa0087850:intron 25.0%
! AAAAGTCAAAATGTATTGGA+CGG + chr1_2:68866597-68866616 Msa0087850:intron 25.0%
!!! TAGTGTTTGTTTTCATTGAA+TGG + chr1_2:68866902-68866921 Msa0087850:intron 25.0%
!! GTTTTCATTGAATGGAATTA+TGG + chr1_2:68866910-68866929 Msa0087850:intron 25.0%
!!! GCATTTTGATTTGAAAATGA+AGG + chr1_2:68866936-68866955 Msa0087850:intron 25.0%
! TAAATTGTAGGGGTTTAAAA+AGG + chr1_2:68866972-68866991 Msa0087850:intron 25.0%
! TTCTTCTAATGTTCTTCAAA+AGG - chr1_2:68867053-68867072 None:intergenic 25.0%
! AAAACAGATGATGAATTTCA+TGG + chr1_2:68867284-68867303 Msa0087850:CDS 25.0%
! TATTGAAGATGTTGATGTAT+TGG + chr1_2:68867603-68867622 Msa0087850:CDS 25.0%
!! TCATATGTTTTTGTGAGGAA+TGG - chr1_2:68866128-68866147 None:intergenic 30.0%
! GAAACTATATGATTTGTGGA+AGG - chr1_2:68866164-68866183 None:intergenic 30.0%
CCATGAAACTATATGATTTG+TGG - chr1_2:68866168-68866187 None:intergenic 30.0%
CCACAAATCATATAGTTTCA+TGG + chr1_2:68866165-68866184 Msa0087850:CDS 30.0%
! ATATAGTTTCATGGAGTACT+GGG + chr1_2:68866174-68866193 Msa0087850:CDS 30.0%
!! GAACAATAGCTTTGTTGTTT+GGG + chr1_2:68866196-68866215 Msa0087850:CDS 30.0%
AGAATAATAGAAAAGGCTTG+AGG - chr1_2:68866224-68866243 None:intergenic 30.0%
AGGGAGAAGAATAATAGAAA+AGG - chr1_2:68866231-68866250 None:intergenic 30.0%
ATTGTCTCTTATGATGAGAA+GGG - chr1_2:68866403-68866422 None:intergenic 30.0%
TATTGTCTCTTATGATGAGA+AGG - chr1_2:68866404-68866423 None:intergenic 30.0%
! CTTTGGAAAGAAATGAATGA+AGG + chr1_2:68866509-68866528 Msa0087850:intron 30.0%
AAAGTCAAAATGTATTGGAC+GGG + chr1_2:68866598-68866617 Msa0087850:intron 30.0%
AAACACGACATTGATACATT+TGG + chr1_2:68866793-68866812 Msa0087850:intron 30.0%
!! TTAAAAAGGTTGATGCAGAT+AGG + chr1_2:68866986-68867005 Msa0087850:CDS 30.0%
TAAAACTCATCTTGAAGCAA+TGG + chr1_2:68867230-68867249 Msa0087850:CDS 30.0%
ACTAACTGTTGCAAGAAATT+AGG - chr1_2:68867327-68867346 None:intergenic 30.0%
!! TAAGAGATACTGAAGTGTTT+TGG + chr1_2:68867542-68867561 Msa0087850:CDS 30.0%
!! GTTTTGGCAAGATTTGTTTA+AGG + chr1_2:68867558-68867577 Msa0087850:CDS 30.0%
!! TCATATGTTTTTGTGAGGAA+TGG - chr1_2:68866128-68866147 None:intergenic 30.0%
! GAAACTATATGATTTGTGGA+AGG - chr1_2:68866164-68866183 None:intergenic 30.0%
CCATGAAACTATATGATTTG+TGG - chr1_2:68866168-68866187 None:intergenic 30.0%
CCACAAATCATATAGTTTCA+TGG + chr1_2:68866165-68866184 Msa0087850:CDS 30.0%
! ATATAGTTTCATGGAGTACT+GGG + chr1_2:68866174-68866193 Msa0087850:CDS 30.0%
!! GAACAATAGCTTTGTTGTTT+GGG + chr1_2:68866196-68866215 Msa0087850:CDS 30.0%
AGAATAATAGAAAAGGCTTG+AGG - chr1_2:68866224-68866243 None:intergenic 30.0%
AGGGAGAAGAATAATAGAAA+AGG - chr1_2:68866231-68866250 None:intergenic 30.0%
ATTGTCTCTTATGATGAGAA+GGG - chr1_2:68866403-68866422 None:intergenic 30.0%
TATTGTCTCTTATGATGAGA+AGG - chr1_2:68866404-68866423 None:intergenic 30.0%
! CTTTGGAAAGAAATGAATGA+AGG + chr1_2:68866509-68866528 Msa0087850:intron 30.0%
AAAGTCAAAATGTATTGGAC+GGG + chr1_2:68866598-68866617 Msa0087850:intron 30.0%
AAACACGACATTGATACATT+TGG + chr1_2:68866793-68866812 Msa0087850:intron 30.0%
!! TTAAAAAGGTTGATGCAGAT+AGG + chr1_2:68866986-68867005 Msa0087850:CDS 30.0%
TAAAACTCATCTTGAAGCAA+TGG + chr1_2:68867230-68867249 Msa0087850:CDS 30.0%
ACTAACTGTTGCAAGAAATT+AGG - chr1_2:68867327-68867346 None:intergenic 30.0%
!! TAAGAGATACTGAAGTGTTT+TGG + chr1_2:68867542-68867561 Msa0087850:CDS 30.0%
!! GTTTTGGCAAGATTTGTTTA+AGG + chr1_2:68867558-68867577 Msa0087850:CDS 30.0%
!! TATGTTTTTGTGAGGAATGG+TGG - chr1_2:68866125-68866144 None:intergenic 35.0%
CATATAGTTTCATGGAGTAC+TGG + chr1_2:68866173-68866192 Msa0087850:CDS 35.0%
!! GGAACAATAGCTTTGTTGTT+TGG + chr1_2:68866195-68866214 Msa0087850:CDS 35.0%
TGTTGTGCTTGAAGAATCTA+GGG - chr1_2:68866250-68866269 None:intergenic 35.0%
TTGTTGTGCTTGAAGAATCT+AGG - chr1_2:68866251-68866270 None:intergenic 35.0%
!! ACAATTTCTCCAGTTTTGTC+CGG + chr1_2:68866267-68866286 Msa0087850:CDS 35.0%
! TCACATAGGTATTAAGTTGC+CGG - chr1_2:68866289-68866308 None:intergenic 35.0%
!!! AAAGGCTATTTTTGGGAGTT+AGG + chr1_2:68866477-68866496 Msa0087850:intron 35.0%
GAGTTAGGAATGAATGACTT+TGG + chr1_2:68866492-68866511 Msa0087850:intron 35.0%
AAGTCAAAATGTATTGGACG+GGG + chr1_2:68866599-68866618 Msa0087850:intron 35.0%
GTAGATAATATGACATCACG+AGG + chr1_2:68866714-68866733 Msa0087850:intron 35.0%
TAACATTGGCATAGACATAG+AGG - chr1_2:68866880-68866899 None:intergenic 35.0%
! GCTAATGAGATGTTTCTAAG+AGG + chr1_2:68867018-68867037 Msa0087850:CDS 35.0%
! ACAAGTTCTAATGGTTGAGT+TGG + chr1_2:68867179-68867198 Msa0087850:CDS 35.0%
ATCTTGAAGCAATGGAAAGA+AGG + chr1_2:68867238-68867257 Msa0087850:CDS 35.0%
AGATGATGAATTTCATGGCA+AGG + chr1_2:68867289-68867308 Msa0087850:intron 35.0%
GATGATGAATTTCATGGCAA+GGG + chr1_2:68867290-68867309 Msa0087850:intron 35.0%
ACATCTGCATCAACATTACT+AGG - chr1_2:68867424-68867443 None:intergenic 35.0%
GTTGATGCAGATGTTGAATT+AGG + chr1_2:68867430-68867449 Msa0087850:CDS 35.0%
TGAACAACATCAAGATGTTG+AGG + chr1_2:68867489-68867508 Msa0087850:CDS 35.0%
! TTGGCAAGATTTGTTTAAGG+AGG + chr1_2:68867561-68867580 Msa0087850:CDS 35.0%
! TGGCAAGATTTGTTTAAGGA+GGG + chr1_2:68867562-68867581 Msa0087850:CDS 35.0%
!! TATGTTTTTGTGAGGAATGG+TGG - chr1_2:68866125-68866144 None:intergenic 35.0%
CATATAGTTTCATGGAGTAC+TGG + chr1_2:68866173-68866192 Msa0087850:CDS 35.0%
!! GGAACAATAGCTTTGTTGTT+TGG + chr1_2:68866195-68866214 Msa0087850:CDS 35.0%
TGTTGTGCTTGAAGAATCTA+GGG - chr1_2:68866250-68866269 None:intergenic 35.0%
TTGTTGTGCTTGAAGAATCT+AGG - chr1_2:68866251-68866270 None:intergenic 35.0%
!! ACAATTTCTCCAGTTTTGTC+CGG + chr1_2:68866267-68866286 Msa0087850:CDS 35.0%
! TCACATAGGTATTAAGTTGC+CGG - chr1_2:68866289-68866308 None:intergenic 35.0%
!!! AAAGGCTATTTTTGGGAGTT+AGG + chr1_2:68866477-68866496 Msa0087850:intron 35.0%
GAGTTAGGAATGAATGACTT+TGG + chr1_2:68866492-68866511 Msa0087850:intron 35.0%
AAGTCAAAATGTATTGGACG+GGG + chr1_2:68866599-68866618 Msa0087850:intron 35.0%
GTAGATAATATGACATCACG+AGG + chr1_2:68866714-68866733 Msa0087850:intron 35.0%
TAACATTGGCATAGACATAG+AGG - chr1_2:68866880-68866899 None:intergenic 35.0%
! GCTAATGAGATGTTTCTAAG+AGG + chr1_2:68867018-68867037 Msa0087850:CDS 35.0%
! ACAAGTTCTAATGGTTGAGT+TGG + chr1_2:68867179-68867198 Msa0087850:CDS 35.0%
ATCTTGAAGCAATGGAAAGA+AGG + chr1_2:68867238-68867257 Msa0087850:CDS 35.0%
AGATGATGAATTTCATGGCA+AGG + chr1_2:68867289-68867308 Msa0087850:intron 35.0%
GATGATGAATTTCATGGCAA+GGG + chr1_2:68867290-68867309 Msa0087850:intron 35.0%
ACATCTGCATCAACATTACT+AGG - chr1_2:68867424-68867443 None:intergenic 35.0%
GTTGATGCAGATGTTGAATT+AGG + chr1_2:68867430-68867449 Msa0087850:CDS 35.0%
TGAACAACATCAAGATGTTG+AGG + chr1_2:68867489-68867508 Msa0087850:CDS 35.0%
! TTGGCAAGATTTGTTTAAGG+AGG + chr1_2:68867561-68867580 Msa0087850:CDS 35.0%
! TGGCAAGATTTGTTTAAGGA+GGG + chr1_2:68867562-68867581 Msa0087850:CDS 35.0%
! AGGAAGTTCTTCCTTTTCTG+TGG + chr1_2:68866055-68866074 Msa0087850:CDS 40.0%
! AGTTCTTCCTTTTCTGTGGT+TGG + chr1_2:68866059-68866078 Msa0087850:CDS 40.0%
! TTTTCATGAAGTCCTTCCCT+TGG - chr1_2:68866095-68866114 None:intergenic 40.0%
AGGGAAGGACTTCATGAAAA+TGG + chr1_2:68866095-68866114 Msa0087850:CDS 40.0%
! ATTAAGTTGCCGGACAAAAC+TGG - chr1_2:68866279-68866298 None:intergenic 40.0%
!! AAAAGGTTGATGCAGATAGG+TGG + chr1_2:68866989-68867008 Msa0087850:CDS 40.0%
!! AAAGGTTGATGCAGATAGGT+GGG + chr1_2:68866990-68867009 Msa0087850:CDS 40.0%
AGTTAGTTCAGCAGAAGGAA+TGG + chr1_2:68867340-68867359 Msa0087850:intron 40.0%
GGAATGGAGAAAAGAGTTAG+AGG + chr1_2:68867356-68867375 Msa0087850:intron 40.0%
AGAAGGAGAACTATTGACGA+AGG + chr1_2:68867397-68867416 Msa0087850:CDS 40.0%
GAAGGAGAACTATTGACGAA+GGG + chr1_2:68867398-68867417 Msa0087850:CDS 40.0%
! AGGAAGTTCTTCCTTTTCTG+TGG + chr1_2:68866055-68866074 Msa0087850:CDS 40.0%
! AGTTCTTCCTTTTCTGTGGT+TGG + chr1_2:68866059-68866078 Msa0087850:CDS 40.0%
! TTTTCATGAAGTCCTTCCCT+TGG - chr1_2:68866095-68866114 None:intergenic 40.0%
AGGGAAGGACTTCATGAAAA+TGG + chr1_2:68866095-68866114 Msa0087850:CDS 40.0%
! ATTAAGTTGCCGGACAAAAC+TGG - chr1_2:68866279-68866298 None:intergenic 40.0%
!! AAAAGGTTGATGCAGATAGG+TGG + chr1_2:68866989-68867008 Msa0087850:CDS 40.0%
!! AAAGGTTGATGCAGATAGGT+GGG + chr1_2:68866990-68867009 Msa0087850:CDS 40.0%
AGTTAGTTCAGCAGAAGGAA+TGG + chr1_2:68867340-68867359 Msa0087850:intron 40.0%
GGAATGGAGAAAAGAGTTAG+AGG + chr1_2:68867356-68867375 Msa0087850:intron 40.0%
AGAAGGAGAACTATTGACGA+AGG + chr1_2:68867397-68867416 Msa0087850:CDS 40.0%
GAAGGAGAACTATTGACGAA+GGG + chr1_2:68867398-68867417 Msa0087850:CDS 40.0%
! TCTTCATCATGGTGGGATGA+AGG + chr1_2:68866019-68866038 Msa0087850:CDS 45.0%
!! ATGAAGGAGGAGTTTGTTGG+AGG + chr1_2:68866035-68866054 Msa0087850:CDS 45.0%
AGGTTCACCAACCACAGAAA+AGG - chr1_2:68866069-68866088 None:intergenic 45.0%
! GTTTTTGTGAGGAATGGTGG+AGG - chr1_2:68866122-68866141 None:intergenic 45.0%
! CTGGGAAGGTTTGGATTAGA+CGG + chr1_2:68867126-68867145 Msa0087850:CDS 45.0%
! TGGATTAGACGGAATCGAAG+TGG + chr1_2:68867137-68867156 Msa0087850:CDS 45.0%
GCAACAGTTAGTTCAGCAGA+AGG + chr1_2:68867335-68867354 Msa0087850:intron 45.0%
!! GATGTATTGGCTGAGCAACT+TGG + chr1_2:68867616-68867635 Msa0087850:CDS 45.0%
! TCTTCATCATGGTGGGATGA+AGG + chr1_2:68866019-68866038 Msa0087850:CDS 45.0%
!! ATGAAGGAGGAGTTTGTTGG+AGG + chr1_2:68866035-68866054 Msa0087850:CDS 45.0%
AGGTTCACCAACCACAGAAA+AGG - chr1_2:68866069-68866088 None:intergenic 45.0%
! GTTTTTGTGAGGAATGGTGG+AGG - chr1_2:68866122-68866141 None:intergenic 45.0%
! CTGGGAAGGTTTGGATTAGA+CGG + chr1_2:68867126-68867145 Msa0087850:CDS 45.0%
! TGGATTAGACGGAATCGAAG+TGG + chr1_2:68867137-68867156 Msa0087850:CDS 45.0%
GCAACAGTTAGTTCAGCAGA+AGG + chr1_2:68867335-68867354 Msa0087850:intron 45.0%
!! GATGTATTGGCTGAGCAACT+TGG + chr1_2:68867616-68867635 Msa0087850:CDS 45.0%
! TCATCATGGTGGGATGAAGG+AGG + chr1_2:68866022-68866041 Msa0087850:CDS 50.0%
GGGATGAAGGAGGAGTTTGT+TGG + chr1_2:68866032-68866051 Msa0087850:CDS 50.0%
!! TGGTTGGTGAACCTCAACCA+AGG + chr1_2:68866075-68866094 Msa0087850:CDS 50.0%
!! GGTTGGTGAACCTCAACCAA+GGG + chr1_2:68866076-68866095 Msa0087850:CDS 50.0%
TGAAGTCCTTCCCTTGGTTG+AGG - chr1_2:68866089-68866108 None:intergenic 50.0%
TTCCCAGCTCAACACATGAC+GGG - chr1_2:68867113-68867132 None:intergenic 50.0%
CTTCCCAGCTCAACACATGA+CGG - chr1_2:68867114-68867133 None:intergenic 50.0%
TGTGTTGAGCTGGGAAGGTT+TGG + chr1_2:68867117-68867136 Msa0087850:CDS 50.0%
TAGACGGAATCGAAGTGGAC+CGG + chr1_2:68867142-68867161 Msa0087850:CDS 50.0%
! GCGCGACAGACAAGTTCTAA+TGG + chr1_2:68867170-68867189 Msa0087850:CDS 50.0%
! TCATCATGGTGGGATGAAGG+AGG + chr1_2:68866022-68866041 Msa0087850:CDS 50.0%
GGGATGAAGGAGGAGTTTGT+TGG + chr1_2:68866032-68866051 Msa0087850:CDS 50.0%
!! TGGTTGGTGAACCTCAACCA+AGG + chr1_2:68866075-68866094 Msa0087850:CDS 50.0%
!! GGTTGGTGAACCTCAACCAA+GGG + chr1_2:68866076-68866095 Msa0087850:CDS 50.0%
TGAAGTCCTTCCCTTGGTTG+AGG - chr1_2:68866089-68866108 None:intergenic 50.0%
TTCCCAGCTCAACACATGAC+GGG - chr1_2:68867113-68867132 None:intergenic 50.0%
CTTCCCAGCTCAACACATGA+CGG - chr1_2:68867114-68867133 None:intergenic 50.0%
TGTGTTGAGCTGGGAAGGTT+TGG + chr1_2:68867117-68867136 Msa0087850:CDS 50.0%
TAGACGGAATCGAAGTGGAC+CGG + chr1_2:68867142-68867161 Msa0087850:CDS 50.0%
! GCGCGACAGACAAGTTCTAA+TGG + chr1_2:68867170-68867189 Msa0087850:CDS 50.0%
GGTGAACCTCAACCAAGGGA+AGG + chr1_2:68866080-68866099 Msa0087850:CDS 55.0%
AGACCCGTCATGTGTTGAGC+TGG + chr1_2:68867107-68867126 Msa0087850:CDS 55.0%
GACCCGTCATGTGTTGAGCT+GGG + chr1_2:68867108-68867127 Msa0087850:CDS 55.0%
CGTCATGTGTTGAGCTGGGA+AGG + chr1_2:68867112-68867131 Msa0087850:CDS 55.0%
GAATCGAAGTGGACCGGTTG+AGG + chr1_2:68867148-68867167 Msa0087850:CDS 55.0%
GGTGAACCTCAACCAAGGGA+AGG + chr1_2:68866080-68866099 Msa0087850:CDS 55.0%
AGACCCGTCATGTGTTGAGC+TGG + chr1_2:68867107-68867126 Msa0087850:CDS 55.0%
GACCCGTCATGTGTTGAGCT+GGG + chr1_2:68867108-68867127 Msa0087850:CDS 55.0%
CGTCATGTGTTGAGCTGGGA+AGG + chr1_2:68867112-68867131 Msa0087850:CDS 55.0%
GAATCGAAGTGGACCGGTTG+AGG + chr1_2:68867148-68867167 Msa0087850:CDS 55.0%
CTTGTCTGTCGCGCCTCAAC+CGG - chr1_2:68867164-68867183 None:intergenic 60.0%
CTTGTCTGTCGCGCCTCAAC+CGG - chr1_2:68867164-68867183 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68866014 68867666 68866014 ID=Msa0087850;Name=Msa0087850
chr1_2 mRNA 68866014 68867666 68866014 ID=Msa0087850-mRNA-1;Parent=Msa0087850;Name=Msa0087850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|294
chr1_2 exon 68866014 68866304 68866014 ID=Msa0087850-mRNA-1:exon:23588;Parent=Msa0087850-mRNA-1
chr1_2 exon 68866982 68867305 68866982 ID=Msa0087850-mRNA-1:exon:23589;Parent=Msa0087850-mRNA-1
chr1_2 exon 68867397 68867666 68867397 ID=Msa0087850-mRNA-1:exon:23590;Parent=Msa0087850-mRNA-1
chr1_2 CDS 68866014 68866304 68866014 ID=Msa0087850-mRNA-1:cds;Parent=Msa0087850-mRNA-1
chr1_2 CDS 68866982 68867305 68866982 ID=Msa0087850-mRNA-1:cds;Parent=Msa0087850-mRNA-1
chr1_2 CDS 68867397 68867666 68867397 ID=Msa0087850-mRNA-1:cds;Parent=Msa0087850-mRNA-1
Gene Sequence

>Msa0087850

ATGAATCTTCATCATGGTGGGATGAAGGAGGAGTTTGTTGGAGGAAGTTCTTCCTTTTCTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTTCATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACTGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCTATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCCGGCAACTTAATACCTATGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAACAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCATGTGTTGAGCTGGGAAGGTTTGGATTAGACGGAATCGAAGTGGACCGGTTGAGGCGCGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGACAACAACAGCAGAATACTAAAACTCATCTTGAAGCAATGGAAAGAAGGCTTAAAAGAAGTGAACAGAAACAAAAACAGATGATGAATTTCATGAGAAGGAGAACTATTGACGAAGGGCCTAGTAATGTTGATGCAGATGTTGAATTAGGATATGTTGATAAAGATTGCTTAAATTTTGTCAAACTTGAACAACATCAAGATGTTGAGGAAAACTCCAATCAAATTAATCAACTTGAAGTAAGAGATACTGAAGTGTTTTGGCAAGATTTGTTTAAGGAGGGTATTGAAGATGAAATAGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG

Protein sequence

>Msa0087850

MNLHHGGMKEEFVGGSSSFSVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANEMFLRGQKILLKNIRRRKTNQSQVMQALDPSCVELGRFGLDGIEVDRLRRDRQVLMVELVKLRQQQQNTKTHLEAMERRLKRSEQKQKQMMNFMRRRTIDEGPSNVDADVELGYVDKDCLNFVKLEQHQDVEENSNQINQLEVRDTEVFWQDLFKEGIEDEIDIEDVDVLAEQLGYLASSPPK*