Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180560 | XP_013469753.1 | 93.333 | 330 | 18 | 1 | 1 | 326 | 1 | 330 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180560 | sp|Q9LUH8|HFA6B_ARATH | 52.355 | 361 | 112 | 6 | 22 | 323 | 43 | 402 | 7.69e-118 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180560 | A0A072VQ54 | 93.333 | 330 | 18 | 1 | 1 | 326 | 1 | 330 | 0.0 | 630 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0180560 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040140 | Msa0180560 | 0.850143 | 2.053815e-60 | -8.615850e-47 |
| Msa0087850 | Msa0180560 | 0.862947 | 3.531529e-64 | -8.615850e-47 |
| Msa0134440 | Msa0180560 | 0.855560 | 5.811341e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180560 | MtrunA17_Chr1g0204741 | 93.333 | 330 | 18 | 1 | 1 | 326 | 1 | 330 | 0.0 | 630 |
| Msa0180560 | MtrunA17_Chr7g0260331 | 52.976 | 336 | 127 | 7 | 17 | 323 | 26 | 359 | 4.72e-109 | 322 |
| Msa0180560 | MtrunA17_Chr3g0135831 | 63.426 | 216 | 72 | 4 | 27 | 240 | 33 | 243 | 2.03e-91 | 277 |
| Msa0180560 | MtrunA17_Chr5g0410881 | 58.744 | 223 | 80 | 4 | 27 | 239 | 19 | 239 | 3.44e-82 | 257 |
| Msa0180560 | MtrunA17_Chr1g0185131 | 49.032 | 310 | 122 | 9 | 23 | 307 | 15 | 313 | 2.98e-76 | 237 |
| Msa0180560 | MtrunA17_Chr4g0039891 | 56.667 | 210 | 80 | 4 | 39 | 240 | 11 | 217 | 4.71e-72 | 231 |
| Msa0180560 | MtrunA17_Chr4g0071051 | 47.541 | 244 | 113 | 5 | 12 | 250 | 73 | 306 | 3.77e-69 | 221 |
| Msa0180560 | MtrunA17_Chr8g0379701 | 38.062 | 289 | 159 | 5 | 39 | 318 | 11 | 288 | 6.43e-57 | 189 |
| Msa0180560 | MtrunA17_Chr8g0392001 | 50.500 | 200 | 85 | 6 | 40 | 227 | 22 | 219 | 1.17e-52 | 177 |
| Msa0180560 | MtrunA17_Chr6g0485571 | 43.627 | 204 | 108 | 3 | 40 | 243 | 11 | 207 | 5.12e-52 | 175 |
| Msa0180560 | MtrunA17_Chr2g0330821 | 44.737 | 190 | 96 | 2 | 34 | 220 | 73 | 256 | 4.08e-51 | 172 |
| Msa0180560 | MtrunA17_Chr6g0467041 | 42.478 | 226 | 115 | 5 | 40 | 262 | 22 | 235 | 4.99e-50 | 169 |
| Msa0180560 | MtrunA17_Chr8g0378061 | 45.545 | 202 | 98 | 5 | 41 | 239 | 23 | 215 | 1.65e-48 | 169 |
| Msa0180560 | MtrunA17_Chr2g0284481 | 41.270 | 189 | 105 | 2 | 31 | 214 | 6 | 193 | 1.43e-42 | 151 |
| Msa0180560 | MtrunA17_Chr3g0134031 | 65.049 | 103 | 36 | 0 | 34 | 136 | 18 | 120 | 2.92e-41 | 147 |
| Msa0180560 | MtrunA17_Chr5g0441531 | 71.579 | 95 | 27 | 0 | 38 | 132 | 23 | 117 | 9.28e-41 | 143 |
| Msa0180560 | MtrunA17_Chr5g0397881 | 64.894 | 94 | 33 | 0 | 38 | 131 | 22 | 115 | 8.75e-38 | 138 |
| Msa0180560 | MtrunA17_Chr1g0203601 | 62.766 | 94 | 35 | 0 | 38 | 131 | 16 | 109 | 2.80e-37 | 135 |
| Msa0180560 | MtrunA17_Chr6g0472421 | 62.766 | 94 | 35 | 0 | 38 | 131 | 31 | 124 | 2.93e-37 | 136 |
| Msa0180560 | MtrunA17_Chr8g0375041 | 41.916 | 167 | 82 | 2 | 37 | 188 | 6 | 172 | 1.44e-36 | 132 |
| Msa0180560 | MtrunA17_Chr7g0257331 | 52.941 | 119 | 49 | 2 | 31 | 142 | 9 | 127 | 8.87e-36 | 129 |
| Msa0180560 | MtrunA17_Chr5g0402291 | 60.417 | 96 | 38 | 0 | 37 | 132 | 6 | 101 | 4.74e-35 | 129 |
| Msa0180560 | MtrunA17_Chr4g0047421 | 42.331 | 163 | 85 | 3 | 38 | 193 | 31 | 191 | 8.87e-33 | 120 |
| Msa0180560 | MtrunA17_Chr1g0179311 | 45.185 | 135 | 72 | 2 | 97 | 231 | 11 | 143 | 6.95e-31 | 119 |
| Msa0180560 | MtrunA17_Chr1g0179321 | 67.123 | 73 | 24 | 0 | 27 | 99 | 36 | 108 | 2.33e-28 | 105 |
| Msa0180560 | MtrunA17_Chr4g0023771 | 61.194 | 67 | 26 | 0 | 31 | 97 | 6 | 72 | 1.02e-20 | 85.9 |
| Msa0180560 | MtrunA17_Chr2g0330841 | 30.556 | 144 | 88 | 3 | 100 | 240 | 41 | 175 | 1.93e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0180560 | AT3G22830.1 | 52.355 | 361 | 112 | 6 | 22 | 323 | 43 | 402 | 7.81e-119 | 348 |
| Msa0180560 | AT2G26150.1 | 45.483 | 321 | 146 | 9 | 27 | 324 | 31 | 345 | 8.94e-87 | 265 |
| Msa0180560 | AT2G26150.4 | 45.483 | 321 | 146 | 9 | 27 | 324 | 31 | 345 | 8.94e-87 | 265 |
| Msa0180560 | AT3G51910.1 | 49.818 | 275 | 103 | 8 | 31 | 299 | 20 | 265 | 1.84e-82 | 251 |
| Msa0180560 | AT4G17750.1 | 53.414 | 249 | 90 | 6 | 16 | 240 | 22 | 268 | 5.66e-78 | 246 |
| Msa0180560 | AT5G16820.1 | 58.065 | 217 | 82 | 3 | 36 | 244 | 23 | 238 | 1.47e-76 | 243 |
| Msa0180560 | AT5G16820.2 | 58.065 | 217 | 82 | 3 | 36 | 244 | 23 | 238 | 1.47e-76 | 243 |
| Msa0180560 | AT1G32330.2 | 53.750 | 240 | 94 | 4 | 16 | 239 | 11 | 249 | 3.36e-76 | 242 |
| Msa0180560 | AT1G32330.1 | 53.750 | 240 | 94 | 4 | 16 | 239 | 11 | 249 | 3.37e-76 | 242 |
| Msa0180560 | AT5G43840.1 | 57.732 | 194 | 69 | 1 | 27 | 220 | 6 | 186 | 2.83e-75 | 233 |
| Msa0180560 | AT3G02990.1 | 56.604 | 212 | 85 | 2 | 39 | 244 | 22 | 232 | 1.97e-73 | 234 |
| Msa0180560 | AT3G63350.1 | 51.818 | 220 | 87 | 3 | 18 | 229 | 6 | 214 | 3.12e-73 | 228 |
| Msa0180560 | AT5G03720.2 | 41.091 | 275 | 161 | 1 | 14 | 288 | 29 | 302 | 1.04e-64 | 210 |
| Msa0180560 | AT5G03720.1 | 41.091 | 275 | 161 | 1 | 14 | 288 | 29 | 302 | 1.04e-64 | 210 |
| Msa0180560 | AT1G67970.1 | 48.837 | 215 | 101 | 5 | 40 | 248 | 19 | 230 | 4.39e-58 | 192 |
| Msa0180560 | AT3G24520.1 | 44.059 | 202 | 91 | 3 | 40 | 241 | 17 | 196 | 6.85e-51 | 172 |
| Msa0180560 | AT4G13980.1 | 43.350 | 203 | 102 | 3 | 41 | 239 | 24 | 217 | 3.21e-49 | 171 |
| Msa0180560 | AT5G54070.1 | 40.708 | 226 | 122 | 4 | 33 | 254 | 63 | 280 | 4.98e-48 | 164 |
| Msa0180560 | AT2G41690.1 | 39.216 | 204 | 107 | 4 | 13 | 209 | 23 | 216 | 2.08e-41 | 144 |
| Msa0180560 | AT4G18880.1 | 44.792 | 192 | 102 | 2 | 32 | 220 | 7 | 197 | 4.54e-41 | 148 |
| Msa0180560 | AT1G46264.1 | 64.423 | 104 | 37 | 0 | 31 | 134 | 25 | 128 | 8.70e-41 | 145 |
| Msa0180560 | AT5G45710.3 | 41.624 | 197 | 110 | 3 | 39 | 232 | 12 | 206 | 9.73e-41 | 145 |
| Msa0180560 | AT5G45710.1 | 41.624 | 197 | 110 | 3 | 39 | 232 | 12 | 206 | 9.73e-41 | 145 |
| Msa0180560 | AT2G26150.3 | 38.462 | 247 | 125 | 9 | 100 | 324 | 49 | 290 | 2.21e-39 | 140 |
| Msa0180560 | AT2G26150.2 | 38.462 | 247 | 125 | 9 | 100 | 324 | 49 | 290 | 2.21e-39 | 140 |
| Msa0180560 | AT4G11660.1 | 60.825 | 97 | 38 | 0 | 38 | 134 | 57 | 153 | 7.95e-38 | 139 |
| Msa0180560 | AT4G36990.1 | 54.464 | 112 | 47 | 1 | 38 | 149 | 12 | 119 | 4.34e-36 | 132 |
| Msa0180560 | AT5G62020.1 | 61.702 | 94 | 36 | 0 | 38 | 131 | 21 | 114 | 1.18e-35 | 131 |
| Msa0180560 | AT4G18870.1 | 37.097 | 124 | 75 | 1 | 29 | 149 | 135 | 258 | 6.87e-21 | 91.3 |
| Msa0180560 | AT4G18870.1 | 48.315 | 89 | 41 | 2 | 41 | 127 | 14 | 99 | 1.15e-19 | 87.8 |
| Msa0180560 | AT4G19630.1 | 39.623 | 106 | 52 | 4 | 36 | 131 | 7 | 110 | 1.63e-13 | 67.0 |
| Msa0180560 | AT1G77570.1 | 37.778 | 90 | 53 | 2 | 41 | 127 | 27 | 116 | 4.69e-12 | 63.5 |
Find 68 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATCAAAGCCTCCTATTT+AGG | 0.202422 | 1_4:-68531680 | None:intergenic |
| ACTAACTGTTGCAAGAAATT+AGG | 0.251206 | 1_4:-68531347 | None:intergenic |
| TAAGAGATATTGACGTGTTT+TGG | 0.267149 | 1_4:+68531564 | Msa0180560:CDS |
| GGAACAATAGCTTTGTTGTT+TGG | 0.274853 | 1_4:+68530160 | Msa0180560:CDS |
| TAAATTGTAGGGGTTTAAAA+AGG | 0.303820 | 1_4:+68530995 | Msa0180560:intron |
| TTCAAGTTGATTAATTTGAT+TGG | 0.327468 | 1_4:-68531540 | None:intergenic |
| GTTGATGCAGATGTTGAATT+AGG | 0.327469 | 1_4:+68531452 | Msa0180560:CDS |
| GAACAATAGCTTTGTTGTTT+GGG | 0.327590 | 1_4:+68530161 | Msa0180560:CDS |
| CCACAAATCATATAGTTTCA+TGG | 0.352549 | 1_4:+68530130 | Msa0180560:CDS |
| TGCCTCTAGTCCTCCTAAAT+AGG | 0.370362 | 1_4:+68531667 | Msa0180560:CDS |
| ATTAAGTTGCCGGACAAAAC+TGG | 0.370804 | 1_4:-68530241 | None:intergenic |
| CTTGTCTGTCGCGCCTCAAC+CGG | 0.383841 | 1_4:-68531184 | None:intergenic |
| TTGTTGTGCTTGAAGAATCT+AGG | 0.383883 | 1_4:-68530213 | None:intergenic |
| TGTGTTGAGCTGGGAAGGTT+TGG | 0.384498 | 1_4:+68531140 | Msa0180560:CDS |
| CATATAGTTTCATGGAGTAC+TGG | 0.392040 | 1_4:+68530138 | Msa0180560:CDS |
| AAAACAGATGATGAATTTCA+TGG | 0.398561 | 1_4:+68531307 | Msa0180560:CDS |
| GGAATGGAGAAAAGAGTTAG+AGG | 0.408095 | 1_4:+68531379 | Msa0180560:CDS |
| TTCTTCTAATGTTCTTCAAA+AGG | 0.412252 | 1_4:-68531073 | None:intergenic |
| CCATGAAACTATATGATTTG+TGG | 0.413159 | 1_4:-68530130 | None:intergenic |
| AGGGAAGGACTTCATGAAAA+TGG | 0.418874 | 1_4:+68530060 | Msa0180560:CDS |
| TCACATAGGTATTAAGTTGC+CGG | 0.435323 | 1_4:-68530251 | None:intergenic |
| TGAAGTCCTTCCCTTGGTTG+AGG | 0.441996 | 1_4:-68530051 | None:intergenic |
| ACATCTGCATCAACATTACT+AGG | 0.447700 | 1_4:-68531443 | None:intergenic |
| TATTGAAGATGTTGATGTAT+TGG | 0.457804 | 1_4:+68531625 | Msa0180560:CDS |
| GCTAATGAGATGTTTCTAAG+AGG | 0.461550 | 1_4:+68531041 | Msa0180560:CDS |
| GGGATGAAGGAGGAGTTTGT+TGG | 0.463474 | 1_4:+68529997 | Msa0180560:CDS |
| ATCTTGAAGCAATGGAAAGA+AGG | 0.466935 | 1_4:+68531261 | Msa0180560:CDS |
| GAATCGAAGTGGACCGGTTG+AGG | 0.470687 | 1_4:+68531171 | Msa0180560:CDS |
| ATGAATATGAATCTTCATCA+TGG | 0.483530 | 1_4:+68529973 | Msa0180560:CDS |
| CGTCATGTGTTGAGCTGGGA+AGG | 0.490133 | 1_4:+68531135 | Msa0180560:CDS |
| GCGCGACAGACAAGTTCTAA+TGG | 0.493467 | 1_4:+68531193 | Msa0180560:CDS |
| AAAGGTTGATGCAGATAGGT+GGG | 0.494489 | 1_4:+68531013 | Msa0180560:CDS |
| AGACCCGTCATGTGTTGAGC+TGG | 0.495058 | 1_4:+68531130 | Msa0180560:CDS |
| ATGAAGGAGGAGTTTGTTGG+AGG | 0.495698 | 1_4:+68530000 | Msa0180560:CDS |
| AGTTAGTTCAGCAGAAGGAA+TGG | 0.496467 | 1_4:+68531363 | Msa0180560:CDS |
| AGAAGGAGAACTATTGATGA+AGG | 0.503305 | 1_4:+68531419 | Msa0180560:CDS |
| AGGTTCACCAACCACAGAAA+AGG | 0.504219 | 1_4:-68530031 | None:intergenic |
| AGGGAGAAGAATAATAGAAA+AGG | 0.505225 | 1_4:-68530193 | None:intergenic |
| TGTTGTGCTTGAAGAATCTA+GGG | 0.511168 | 1_4:-68530212 | None:intergenic |
| TCTTCATCATGGTGGGATGA+AGG | 0.511768 | 1_4:+68529984 | Msa0180560:CDS |
| ATCAAAGCCTCCTATTTAGG+AGG | 0.518160 | 1_4:-68531677 | None:intergenic |
| ACAAGTTCTAATGGTTGAGT+TGG | 0.523658 | 1_4:+68531202 | Msa0180560:CDS |
| TGGCAAGATTTGTTTAAGGA+GGG | 0.525419 | 1_4:+68531584 | Msa0180560:CDS |
| CTGGGAAGGTTTGGATTAGA+CGG | 0.525469 | 1_4:+68531149 | Msa0180560:CDS |
| TTGGCAAGATTTGTTTAAGG+AGG | 0.525683 | 1_4:+68531583 | Msa0180560:CDS |
| TAGAACTCATCTTGAAGCAA+TGG | 0.536822 | 1_4:+68531253 | Msa0180560:CDS |
| AAAAGGTTGATGCAGATAGG+TGG | 0.546223 | 1_4:+68531012 | Msa0180560:CDS |
| TTCCCAGCTCAACACATGAC+GGG | 0.552361 | 1_4:-68531133 | None:intergenic |
| GATGATGAATTTCATGGCAA+GGG | 0.556515 | 1_4:+68531313 | Msa0180560:CDS |
| ATATAGTTTCATGGAGTACT+GGG | 0.559738 | 1_4:+68530139 | Msa0180560:CDS |
| TGAACAACATCAAGATGTTG+TGG | 0.563517 | 1_4:+68531511 | Msa0180560:CDS |
| GACCCGTCATGTGTTGAGCT+GGG | 0.564277 | 1_4:+68531131 | Msa0180560:CDS |
| AGATGATGAATTTCATGGCA+AGG | 0.575521 | 1_4:+68531312 | Msa0180560:CDS |
| CTTCCCAGCTCAACACATGA+CGG | 0.580827 | 1_4:-68531134 | None:intergenic |
| CTCCTATTTAGGAGGACTAG+AGG | 0.581849 | 1_4:-68531669 | None:intergenic |
| GCAACAGTTAGTTCAGCAGA+AGG | 0.585939 | 1_4:+68531358 | Msa0180560:CDS |
| AGAATAATAGAAAAGGCTTG+AGG | 0.598445 | 1_4:-68530186 | None:intergenic |
| TGGATTAGACGGAATCGAAG+TGG | 0.602364 | 1_4:+68531160 | Msa0180560:CDS |
| GATGTATTGGCTGAGCAACT+TGG | 0.605475 | 1_4:+68531638 | Msa0180560:CDS |
| AATATGAATCTTCATCATGG+TGG | 0.612258 | 1_4:+68529976 | Msa0180560:CDS |
| TAGACGGAATCGAAGTGGAC+CGG | 0.614296 | 1_4:+68531165 | Msa0180560:CDS |
| GAAGGAGAACTATTGATGAA+GGG | 0.618906 | 1_4:+68531420 | Msa0180560:CDS |
| GAAACTATATGATTTGTGGA+AGG | 0.623337 | 1_4:-68530126 | None:intergenic |
| ATATGAATCTTCATCATGGT+GGG | 0.643772 | 1_4:+68529977 | Msa0180560:CDS |
| TCATCATGGTGGGATGAAGG+AGG | 0.650270 | 1_4:+68529987 | Msa0180560:CDS |
| GGTGAACCTCAACCAAGGGA+AGG | 0.659511 | 1_4:+68530045 | Msa0180560:CDS |
| TGGTTGGTGAACCTCAACCA+AGG | 0.664718 | 1_4:+68530040 | Msa0180560:CDS |
| GGTTGGTGAACCTCAACCAA+GGG | 0.679182 | 1_4:+68530041 | Msa0180560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGAAATTAAATTGTA+GGG | + | chr1_4:68530984-68531003 | Msa0180560:intron | 10.0% |
| !!! | AAATTTGAAATTAAATTGTA+GGG | + | chr1_4:68530984-68531003 | Msa0180560:intron | 10.0% |
| !!! | AACATTTTTGTTTCATTATA+TGG | + | chr1_4:68530408-68530427 | Msa0180560:intron | 15.0% |
| !! | AAATAAACACTAATTAACAT+TGG | - | chr1_4:68530917-68530936 | None:intergenic | 15.0% |
| !!! | GAAATTTGAAATTAAATTGT+AGG | + | chr1_4:68530983-68531002 | Msa0180560:intron | 15.0% |
| !!! | AATTTGAAATTAAATTGTAG+GGG | + | chr1_4:68530985-68531004 | Msa0180560:intron | 15.0% |
| !!! | AACATTTTTGTTTCATTATA+TGG | + | chr1_4:68530408-68530427 | Msa0180560:intron | 15.0% |
| !! | AAATAAACACTAATTAACAT+TGG | - | chr1_4:68530917-68530936 | None:intergenic | 15.0% |
| !!! | GAAATTTGAAATTAAATTGT+AGG | + | chr1_4:68530983-68531002 | Msa0180560:intron | 15.0% |
| !!! | AATTTGAAATTAAATTGTAG+GGG | + | chr1_4:68530985-68531004 | Msa0180560:intron | 15.0% |
| !! | AGTTGAAATATAAAAGTCTT+AGG | + | chr1_4:68530476-68530495 | Msa0180560:intron | 20.0% |
| !!! | TTTGACTTTTCTCTATATTA+GGG | - | chr1_4:68530604-68530623 | None:intergenic | 20.0% |
| !!! | TTTTGACTTTTCTCTATATT+AGG | - | chr1_4:68530605-68530624 | None:intergenic | 20.0% |
| !!! | TAGTGTTTATTTTCATTGAA+TGG | + | chr1_4:68530925-68530944 | Msa0180560:intron | 20.0% |
| !!! | ATTTTCATTGAATGGAATTA+TGG | + | chr1_4:68530933-68530952 | Msa0180560:intron | 20.0% |
| !!! | AAATTTTTTCTAAGAAGAGA+AGG | + | chr1_4:68531402-68531421 | Msa0180560:CDS | 20.0% |
| !!! | TTCAAGTTGATTAATTTGAT+TGG | - | chr1_4:68531543-68531562 | None:intergenic | 20.0% |
| !! | AGTTGAAATATAAAAGTCTT+AGG | + | chr1_4:68530476-68530495 | Msa0180560:intron | 20.0% |
| !!! | TTTGACTTTTCTCTATATTA+GGG | - | chr1_4:68530604-68530623 | None:intergenic | 20.0% |
| !!! | TTTTGACTTTTCTCTATATT+AGG | - | chr1_4:68530605-68530624 | None:intergenic | 20.0% |
| !!! | TAGTGTTTATTTTCATTGAA+TGG | + | chr1_4:68530925-68530944 | Msa0180560:intron | 20.0% |
| !!! | ATTTTCATTGAATGGAATTA+TGG | + | chr1_4:68530933-68530952 | Msa0180560:intron | 20.0% |
| !!! | AAATTTTTTCTAAGAAGAGA+AGG | + | chr1_4:68531402-68531421 | Msa0180560:CDS | 20.0% |
| !!! | TTCAAGTTGATTAATTTGAT+TGG | - | chr1_4:68531543-68531562 | None:intergenic | 20.0% |
| ! | ATGAATATGAATCTTCATCA+TGG | + | chr1_4:68529973-68529992 | Msa0180560:CDS | 25.0% |
| !!! | CTATATCATATGTTTTTGTG+AGG | - | chr1_4:68530098-68530117 | None:intergenic | 25.0% |
| ! | TTAAATACTACTACTCACAT+AGG | - | chr1_4:68530268-68530287 | None:intergenic | 25.0% |
| ! | TATCTCATCAGATTAAACAA+AGG | - | chr1_4:68530339-68530358 | None:intergenic | 25.0% |
| ! | TTGTTTAATCTGATGAGATA+AGG | + | chr1_4:68530339-68530358 | Msa0180560:intron | 25.0% |
| ! | TTATATTTCAACTGCAATTG+AGG | - | chr1_4:68530469-68530488 | None:intergenic | 25.0% |
| !!! | TAAAAGTCTTAGGCTATTTT+TGG | + | chr1_4:68530486-68530505 | Msa0180560:intron | 25.0% |
| !!! | AAAAGTCTTAGGCTATTTTT+GGG | + | chr1_4:68530487-68530506 | Msa0180560:intron | 25.0% |
| !!! | ATTGTGTGAGTTATTTTTCT+TGG | + | chr1_4:68530565-68530584 | Msa0180560:intron | 25.0% |
| ! | AGAGAAAAGTCAAAATGTAT+TGG | + | chr1_4:68530610-68530629 | Msa0180560:intron | 25.0% |
| ! | AAAAGTCAAAATGTATTGGA+CGG | + | chr1_4:68530614-68530633 | Msa0180560:intron | 25.0% |
| !!! | GCATTTTGATTTGAAAATGA+AGG | + | chr1_4:68530959-68530978 | Msa0180560:intron | 25.0% |
| ! | TAAATTGTAGGGGTTTAAAA+AGG | + | chr1_4:68530995-68531014 | Msa0180560:intron | 25.0% |
| ! | TTCTTCTAATGTTCTTCAAA+AGG | - | chr1_4:68531076-68531095 | None:intergenic | 25.0% |
| ! | AAAACAGATGATGAATTTCA+TGG | + | chr1_4:68531307-68531326 | Msa0180560:CDS | 25.0% |
| ! | TATTGAAGATGTTGATGTAT+TGG | + | chr1_4:68531625-68531644 | Msa0180560:CDS | 25.0% |
| ! | ATGAATATGAATCTTCATCA+TGG | + | chr1_4:68529973-68529992 | Msa0180560:CDS | 25.0% |
| !!! | CTATATCATATGTTTTTGTG+AGG | - | chr1_4:68530098-68530117 | None:intergenic | 25.0% |
| ! | TTAAATACTACTACTCACAT+AGG | - | chr1_4:68530268-68530287 | None:intergenic | 25.0% |
| ! | TATCTCATCAGATTAAACAA+AGG | - | chr1_4:68530339-68530358 | None:intergenic | 25.0% |
| ! | TTGTTTAATCTGATGAGATA+AGG | + | chr1_4:68530339-68530358 | Msa0180560:intron | 25.0% |
| ! | TTATATTTCAACTGCAATTG+AGG | - | chr1_4:68530469-68530488 | None:intergenic | 25.0% |
| !!! | TAAAAGTCTTAGGCTATTTT+TGG | + | chr1_4:68530486-68530505 | Msa0180560:intron | 25.0% |
| !!! | AAAAGTCTTAGGCTATTTTT+GGG | + | chr1_4:68530487-68530506 | Msa0180560:intron | 25.0% |
| !!! | ATTGTGTGAGTTATTTTTCT+TGG | + | chr1_4:68530565-68530584 | Msa0180560:intron | 25.0% |
| ! | AGAGAAAAGTCAAAATGTAT+TGG | + | chr1_4:68530610-68530629 | Msa0180560:intron | 25.0% |
| ! | AAAAGTCAAAATGTATTGGA+CGG | + | chr1_4:68530614-68530633 | Msa0180560:intron | 25.0% |
| !!! | GCATTTTGATTTGAAAATGA+AGG | + | chr1_4:68530959-68530978 | Msa0180560:intron | 25.0% |
| ! | TAAATTGTAGGGGTTTAAAA+AGG | + | chr1_4:68530995-68531014 | Msa0180560:intron | 25.0% |
| ! | TTCTTCTAATGTTCTTCAAA+AGG | - | chr1_4:68531076-68531095 | None:intergenic | 25.0% |
| ! | AAAACAGATGATGAATTTCA+TGG | + | chr1_4:68531307-68531326 | Msa0180560:CDS | 25.0% |
| ! | TATTGAAGATGTTGATGTAT+TGG | + | chr1_4:68531625-68531644 | Msa0180560:CDS | 25.0% |
| AATATGAATCTTCATCATGG+TGG | + | chr1_4:68529976-68529995 | Msa0180560:CDS | 30.0% | |
| ATATGAATCTTCATCATGGT+GGG | + | chr1_4:68529977-68529996 | Msa0180560:CDS | 30.0% | |
| !! | TCATATGTTTTTGTGAGGAA+TGG | - | chr1_4:68530093-68530112 | None:intergenic | 30.0% |
| ! | GAAACTATATGATTTGTGGA+AGG | - | chr1_4:68530129-68530148 | None:intergenic | 30.0% |
| CCATGAAACTATATGATTTG+TGG | - | chr1_4:68530133-68530152 | None:intergenic | 30.0% | |
| CCACAAATCATATAGTTTCA+TGG | + | chr1_4:68530130-68530149 | Msa0180560:CDS | 30.0% | |
| ! | ATATAGTTTCATGGAGTACT+GGG | + | chr1_4:68530139-68530158 | Msa0180560:CDS | 30.0% |
| !! | GAACAATAGCTTTGTTGTTT+GGG | + | chr1_4:68530161-68530180 | Msa0180560:CDS | 30.0% |
| AGAATAATAGAAAAGGCTTG+AGG | - | chr1_4:68530189-68530208 | None:intergenic | 30.0% | |
| AGGGAGAAGAATAATAGAAA+AGG | - | chr1_4:68530196-68530215 | None:intergenic | 30.0% | |
| ATTGTCTCTTATGATGAGAA+GGG | - | chr1_4:68530371-68530390 | None:intergenic | 30.0% | |
| TATTGTCTCTTATGATGAGA+AGG | - | chr1_4:68530372-68530391 | None:intergenic | 30.0% | |
| ! | CTTTGGAAAGAAATGAATGA+AGG | + | chr1_4:68530526-68530545 | Msa0180560:intron | 30.0% |
| AAAGTCAAAATGTATTGGAC+GGG | + | chr1_4:68530615-68530634 | Msa0180560:intron | 30.0% | |
| AAACACGACATTGATACATT+TGG | + | chr1_4:68530810-68530829 | Msa0180560:intron | 30.0% | |
| !! | TTAAAAAGGTTGATGCAGAT+AGG | + | chr1_4:68531009-68531028 | Msa0180560:CDS | 30.0% |
| ACTAACTGTTGCAAGAAATT+AGG | - | chr1_4:68531350-68531369 | None:intergenic | 30.0% | |
| ! | TAAGAGATATTGACGTGTTT+TGG | + | chr1_4:68531564-68531583 | Msa0180560:CDS | 30.0% |
| !! | GTTTTGGCAAGATTTGTTTA+AGG | + | chr1_4:68531580-68531599 | Msa0180560:CDS | 30.0% |
| AATATGAATCTTCATCATGG+TGG | + | chr1_4:68529976-68529995 | Msa0180560:CDS | 30.0% | |
| ATATGAATCTTCATCATGGT+GGG | + | chr1_4:68529977-68529996 | Msa0180560:CDS | 30.0% | |
| !! | TCATATGTTTTTGTGAGGAA+TGG | - | chr1_4:68530093-68530112 | None:intergenic | 30.0% |
| ! | GAAACTATATGATTTGTGGA+AGG | - | chr1_4:68530129-68530148 | None:intergenic | 30.0% |
| CCATGAAACTATATGATTTG+TGG | - | chr1_4:68530133-68530152 | None:intergenic | 30.0% | |
| CCACAAATCATATAGTTTCA+TGG | + | chr1_4:68530130-68530149 | Msa0180560:CDS | 30.0% | |
| ! | ATATAGTTTCATGGAGTACT+GGG | + | chr1_4:68530139-68530158 | Msa0180560:CDS | 30.0% |
| !! | GAACAATAGCTTTGTTGTTT+GGG | + | chr1_4:68530161-68530180 | Msa0180560:CDS | 30.0% |
| AGAATAATAGAAAAGGCTTG+AGG | - | chr1_4:68530189-68530208 | None:intergenic | 30.0% | |
| AGGGAGAAGAATAATAGAAA+AGG | - | chr1_4:68530196-68530215 | None:intergenic | 30.0% | |
| ATTGTCTCTTATGATGAGAA+GGG | - | chr1_4:68530371-68530390 | None:intergenic | 30.0% | |
| TATTGTCTCTTATGATGAGA+AGG | - | chr1_4:68530372-68530391 | None:intergenic | 30.0% | |
| ! | CTTTGGAAAGAAATGAATGA+AGG | + | chr1_4:68530526-68530545 | Msa0180560:intron | 30.0% |
| AAAGTCAAAATGTATTGGAC+GGG | + | chr1_4:68530615-68530634 | Msa0180560:intron | 30.0% | |
| AAACACGACATTGATACATT+TGG | + | chr1_4:68530810-68530829 | Msa0180560:intron | 30.0% | |
| !! | TTAAAAAGGTTGATGCAGAT+AGG | + | chr1_4:68531009-68531028 | Msa0180560:CDS | 30.0% |
| ACTAACTGTTGCAAGAAATT+AGG | - | chr1_4:68531350-68531369 | None:intergenic | 30.0% | |
| ! | TAAGAGATATTGACGTGTTT+TGG | + | chr1_4:68531564-68531583 | Msa0180560:CDS | 30.0% |
| !! | GTTTTGGCAAGATTTGTTTA+AGG | + | chr1_4:68531580-68531599 | Msa0180560:CDS | 30.0% |
| !! | TATGTTTTTGTGAGGAATGG+TGG | - | chr1_4:68530090-68530109 | None:intergenic | 35.0% |
| CATATAGTTTCATGGAGTAC+TGG | + | chr1_4:68530138-68530157 | Msa0180560:CDS | 35.0% | |
| !! | GGAACAATAGCTTTGTTGTT+TGG | + | chr1_4:68530160-68530179 | Msa0180560:CDS | 35.0% |
| TGTTGTGCTTGAAGAATCTA+GGG | - | chr1_4:68530215-68530234 | None:intergenic | 35.0% | |
| TTGTTGTGCTTGAAGAATCT+AGG | - | chr1_4:68530216-68530235 | None:intergenic | 35.0% | |
| !! | ACAATTTCTCCAGTTTTGTC+CGG | + | chr1_4:68530232-68530251 | Msa0180560:CDS | 35.0% |
| ! | TCACATAGGTATTAAGTTGC+CGG | - | chr1_4:68530254-68530273 | None:intergenic | 35.0% |
| !!! | TTAGGCTATTTTTGGGAGTT+AGG | + | chr1_4:68530494-68530513 | Msa0180560:intron | 35.0% |
| GAGTTAGGAATGAATGACTT+TGG | + | chr1_4:68530509-68530528 | Msa0180560:intron | 35.0% | |
| AAGTCAAAATGTATTGGACG+GGG | + | chr1_4:68530616-68530635 | Msa0180560:intron | 35.0% | |
| GTAGATAATATGACATCACG+AGG | + | chr1_4:68530731-68530750 | Msa0180560:intron | 35.0% | |
| TAACATTGGCATAGACATAG+AGG | - | chr1_4:68530903-68530922 | None:intergenic | 35.0% | |
| ! | GCTAATGAGATGTTTCTAAG+AGG | + | chr1_4:68531041-68531060 | Msa0180560:CDS | 35.0% |
| ! | ACAAGTTCTAATGGTTGAGT+TGG | + | chr1_4:68531202-68531221 | Msa0180560:CDS | 35.0% |
| TAGAACTCATCTTGAAGCAA+TGG | + | chr1_4:68531253-68531272 | Msa0180560:CDS | 35.0% | |
| ATCTTGAAGCAATGGAAAGA+AGG | + | chr1_4:68531261-68531280 | Msa0180560:CDS | 35.0% | |
| AGATGATGAATTTCATGGCA+AGG | + | chr1_4:68531312-68531331 | Msa0180560:CDS | 35.0% | |
| GATGATGAATTTCATGGCAA+GGG | + | chr1_4:68531313-68531332 | Msa0180560:CDS | 35.0% | |
| AGAAGGAGAACTATTGATGA+AGG | + | chr1_4:68531419-68531438 | Msa0180560:CDS | 35.0% | |
| GAAGGAGAACTATTGATGAA+GGG | + | chr1_4:68531420-68531439 | Msa0180560:CDS | 35.0% | |
| ACATCTGCATCAACATTACT+AGG | - | chr1_4:68531446-68531465 | None:intergenic | 35.0% | |
| GTTGATGCAGATGTTGAATT+AGG | + | chr1_4:68531452-68531471 | Msa0180560:CDS | 35.0% | |
| TGAACAACATCAAGATGTTG+TGG | + | chr1_4:68531511-68531530 | Msa0180560:CDS | 35.0% | |
| ! | TTGGCAAGATTTGTTTAAGG+AGG | + | chr1_4:68531583-68531602 | Msa0180560:CDS | 35.0% |
| ! | TGGCAAGATTTGTTTAAGGA+GGG | + | chr1_4:68531584-68531603 | Msa0180560:CDS | 35.0% |
| !! | TATGTTTTTGTGAGGAATGG+TGG | - | chr1_4:68530090-68530109 | None:intergenic | 35.0% |
| CATATAGTTTCATGGAGTAC+TGG | + | chr1_4:68530138-68530157 | Msa0180560:CDS | 35.0% | |
| !! | GGAACAATAGCTTTGTTGTT+TGG | + | chr1_4:68530160-68530179 | Msa0180560:CDS | 35.0% |
| TGTTGTGCTTGAAGAATCTA+GGG | - | chr1_4:68530215-68530234 | None:intergenic | 35.0% | |
| TTGTTGTGCTTGAAGAATCT+AGG | - | chr1_4:68530216-68530235 | None:intergenic | 35.0% | |
| !! | ACAATTTCTCCAGTTTTGTC+CGG | + | chr1_4:68530232-68530251 | Msa0180560:CDS | 35.0% |
| ! | TCACATAGGTATTAAGTTGC+CGG | - | chr1_4:68530254-68530273 | None:intergenic | 35.0% |
| !!! | TTAGGCTATTTTTGGGAGTT+AGG | + | chr1_4:68530494-68530513 | Msa0180560:intron | 35.0% |
| GAGTTAGGAATGAATGACTT+TGG | + | chr1_4:68530509-68530528 | Msa0180560:intron | 35.0% | |
| AAGTCAAAATGTATTGGACG+GGG | + | chr1_4:68530616-68530635 | Msa0180560:intron | 35.0% | |
| GTAGATAATATGACATCACG+AGG | + | chr1_4:68530731-68530750 | Msa0180560:intron | 35.0% | |
| TAACATTGGCATAGACATAG+AGG | - | chr1_4:68530903-68530922 | None:intergenic | 35.0% | |
| ! | GCTAATGAGATGTTTCTAAG+AGG | + | chr1_4:68531041-68531060 | Msa0180560:CDS | 35.0% |
| ! | ACAAGTTCTAATGGTTGAGT+TGG | + | chr1_4:68531202-68531221 | Msa0180560:CDS | 35.0% |
| TAGAACTCATCTTGAAGCAA+TGG | + | chr1_4:68531253-68531272 | Msa0180560:CDS | 35.0% | |
| ATCTTGAAGCAATGGAAAGA+AGG | + | chr1_4:68531261-68531280 | Msa0180560:CDS | 35.0% | |
| AGATGATGAATTTCATGGCA+AGG | + | chr1_4:68531312-68531331 | Msa0180560:CDS | 35.0% | |
| GATGATGAATTTCATGGCAA+GGG | + | chr1_4:68531313-68531332 | Msa0180560:CDS | 35.0% | |
| AGAAGGAGAACTATTGATGA+AGG | + | chr1_4:68531419-68531438 | Msa0180560:CDS | 35.0% | |
| GAAGGAGAACTATTGATGAA+GGG | + | chr1_4:68531420-68531439 | Msa0180560:CDS | 35.0% | |
| ACATCTGCATCAACATTACT+AGG | - | chr1_4:68531446-68531465 | None:intergenic | 35.0% | |
| GTTGATGCAGATGTTGAATT+AGG | + | chr1_4:68531452-68531471 | Msa0180560:CDS | 35.0% | |
| TGAACAACATCAAGATGTTG+TGG | + | chr1_4:68531511-68531530 | Msa0180560:CDS | 35.0% | |
| ! | TTGGCAAGATTTGTTTAAGG+AGG | + | chr1_4:68531583-68531602 | Msa0180560:CDS | 35.0% |
| ! | TGGCAAGATTTGTTTAAGGA+GGG | + | chr1_4:68531584-68531603 | Msa0180560:CDS | 35.0% |
| ! | AGGAAGTTCTTCCTTTTCTG+TGG | + | chr1_4:68530020-68530039 | Msa0180560:CDS | 40.0% |
| ! | AGTTCTTCCTTTTCTGTGGT+TGG | + | chr1_4:68530024-68530043 | Msa0180560:CDS | 40.0% |
| ! | TTTTCATGAAGTCCTTCCCT+TGG | - | chr1_4:68530060-68530079 | None:intergenic | 40.0% |
| AGGGAAGGACTTCATGAAAA+TGG | + | chr1_4:68530060-68530079 | Msa0180560:CDS | 40.0% | |
| ! | ATTAAGTTGCCGGACAAAAC+TGG | - | chr1_4:68530244-68530263 | None:intergenic | 40.0% |
| !! | AAAAGGTTGATGCAGATAGG+TGG | + | chr1_4:68531012-68531031 | Msa0180560:CDS | 40.0% |
| !! | AAAGGTTGATGCAGATAGGT+GGG | + | chr1_4:68531013-68531032 | Msa0180560:CDS | 40.0% |
| AGTTAGTTCAGCAGAAGGAA+TGG | + | chr1_4:68531363-68531382 | Msa0180560:CDS | 40.0% | |
| GGAATGGAGAAAAGAGTTAG+AGG | + | chr1_4:68531379-68531398 | Msa0180560:CDS | 40.0% | |
| ! | AGGAAGTTCTTCCTTTTCTG+TGG | + | chr1_4:68530020-68530039 | Msa0180560:CDS | 40.0% |
| ! | AGTTCTTCCTTTTCTGTGGT+TGG | + | chr1_4:68530024-68530043 | Msa0180560:CDS | 40.0% |
| ! | TTTTCATGAAGTCCTTCCCT+TGG | - | chr1_4:68530060-68530079 | None:intergenic | 40.0% |
| AGGGAAGGACTTCATGAAAA+TGG | + | chr1_4:68530060-68530079 | Msa0180560:CDS | 40.0% | |
| ! | ATTAAGTTGCCGGACAAAAC+TGG | - | chr1_4:68530244-68530263 | None:intergenic | 40.0% |
| !! | AAAAGGTTGATGCAGATAGG+TGG | + | chr1_4:68531012-68531031 | Msa0180560:CDS | 40.0% |
| !! | AAAGGTTGATGCAGATAGGT+GGG | + | chr1_4:68531013-68531032 | Msa0180560:CDS | 40.0% |
| AGTTAGTTCAGCAGAAGGAA+TGG | + | chr1_4:68531363-68531382 | Msa0180560:CDS | 40.0% | |
| GGAATGGAGAAAAGAGTTAG+AGG | + | chr1_4:68531379-68531398 | Msa0180560:CDS | 40.0% | |
| ! | TCTTCATCATGGTGGGATGA+AGG | + | chr1_4:68529984-68530003 | Msa0180560:CDS | 45.0% |
| !! | ATGAAGGAGGAGTTTGTTGG+AGG | + | chr1_4:68530000-68530019 | Msa0180560:CDS | 45.0% |
| AGGTTCACCAACCACAGAAA+AGG | - | chr1_4:68530034-68530053 | None:intergenic | 45.0% | |
| ! | GTTTTTGTGAGGAATGGTGG+AGG | - | chr1_4:68530087-68530106 | None:intergenic | 45.0% |
| ! | CTGGGAAGGTTTGGATTAGA+CGG | + | chr1_4:68531149-68531168 | Msa0180560:CDS | 45.0% |
| ! | TGGATTAGACGGAATCGAAG+TGG | + | chr1_4:68531160-68531179 | Msa0180560:CDS | 45.0% |
| GCAACAGTTAGTTCAGCAGA+AGG | + | chr1_4:68531358-68531377 | Msa0180560:CDS | 45.0% | |
| !! | GATGTATTGGCTGAGCAACT+TGG | + | chr1_4:68531638-68531657 | Msa0180560:CDS | 45.0% |
| ! | TCTTCATCATGGTGGGATGA+AGG | + | chr1_4:68529984-68530003 | Msa0180560:CDS | 45.0% |
| !! | ATGAAGGAGGAGTTTGTTGG+AGG | + | chr1_4:68530000-68530019 | Msa0180560:CDS | 45.0% |
| AGGTTCACCAACCACAGAAA+AGG | - | chr1_4:68530034-68530053 | None:intergenic | 45.0% | |
| ! | GTTTTTGTGAGGAATGGTGG+AGG | - | chr1_4:68530087-68530106 | None:intergenic | 45.0% |
| ! | CTGGGAAGGTTTGGATTAGA+CGG | + | chr1_4:68531149-68531168 | Msa0180560:CDS | 45.0% |
| ! | TGGATTAGACGGAATCGAAG+TGG | + | chr1_4:68531160-68531179 | Msa0180560:CDS | 45.0% |
| GCAACAGTTAGTTCAGCAGA+AGG | + | chr1_4:68531358-68531377 | Msa0180560:CDS | 45.0% | |
| !! | GATGTATTGGCTGAGCAACT+TGG | + | chr1_4:68531638-68531657 | Msa0180560:CDS | 45.0% |
| ! | TCATCATGGTGGGATGAAGG+AGG | + | chr1_4:68529987-68530006 | Msa0180560:CDS | 50.0% |
| GGGATGAAGGAGGAGTTTGT+TGG | + | chr1_4:68529997-68530016 | Msa0180560:CDS | 50.0% | |
| !! | TGGTTGGTGAACCTCAACCA+AGG | + | chr1_4:68530040-68530059 | Msa0180560:CDS | 50.0% |
| !! | GGTTGGTGAACCTCAACCAA+GGG | + | chr1_4:68530041-68530060 | Msa0180560:CDS | 50.0% |
| TGAAGTCCTTCCCTTGGTTG+AGG | - | chr1_4:68530054-68530073 | None:intergenic | 50.0% | |
| TTCCCAGCTCAACACATGAC+GGG | - | chr1_4:68531136-68531155 | None:intergenic | 50.0% | |
| CTTCCCAGCTCAACACATGA+CGG | - | chr1_4:68531137-68531156 | None:intergenic | 50.0% | |
| TGTGTTGAGCTGGGAAGGTT+TGG | + | chr1_4:68531140-68531159 | Msa0180560:CDS | 50.0% | |
| TAGACGGAATCGAAGTGGAC+CGG | + | chr1_4:68531165-68531184 | Msa0180560:CDS | 50.0% | |
| ! | GCGCGACAGACAAGTTCTAA+TGG | + | chr1_4:68531193-68531212 | Msa0180560:CDS | 50.0% |
| ! | TCATCATGGTGGGATGAAGG+AGG | + | chr1_4:68529987-68530006 | Msa0180560:CDS | 50.0% |
| GGGATGAAGGAGGAGTTTGT+TGG | + | chr1_4:68529997-68530016 | Msa0180560:CDS | 50.0% | |
| !! | TGGTTGGTGAACCTCAACCA+AGG | + | chr1_4:68530040-68530059 | Msa0180560:CDS | 50.0% |
| !! | GGTTGGTGAACCTCAACCAA+GGG | + | chr1_4:68530041-68530060 | Msa0180560:CDS | 50.0% |
| TGAAGTCCTTCCCTTGGTTG+AGG | - | chr1_4:68530054-68530073 | None:intergenic | 50.0% | |
| TTCCCAGCTCAACACATGAC+GGG | - | chr1_4:68531136-68531155 | None:intergenic | 50.0% | |
| CTTCCCAGCTCAACACATGA+CGG | - | chr1_4:68531137-68531156 | None:intergenic | 50.0% | |
| TGTGTTGAGCTGGGAAGGTT+TGG | + | chr1_4:68531140-68531159 | Msa0180560:CDS | 50.0% | |
| TAGACGGAATCGAAGTGGAC+CGG | + | chr1_4:68531165-68531184 | Msa0180560:CDS | 50.0% | |
| ! | GCGCGACAGACAAGTTCTAA+TGG | + | chr1_4:68531193-68531212 | Msa0180560:CDS | 50.0% |
| GGTGAACCTCAACCAAGGGA+AGG | + | chr1_4:68530045-68530064 | Msa0180560:CDS | 55.0% | |
| AGACCCGTCATGTGTTGAGC+TGG | + | chr1_4:68531130-68531149 | Msa0180560:CDS | 55.0% | |
| GACCCGTCATGTGTTGAGCT+GGG | + | chr1_4:68531131-68531150 | Msa0180560:CDS | 55.0% | |
| CGTCATGTGTTGAGCTGGGA+AGG | + | chr1_4:68531135-68531154 | Msa0180560:CDS | 55.0% | |
| GAATCGAAGTGGACCGGTTG+AGG | + | chr1_4:68531171-68531190 | Msa0180560:CDS | 55.0% | |
| GGTGAACCTCAACCAAGGGA+AGG | + | chr1_4:68530045-68530064 | Msa0180560:CDS | 55.0% | |
| AGACCCGTCATGTGTTGAGC+TGG | + | chr1_4:68531130-68531149 | Msa0180560:CDS | 55.0% | |
| GACCCGTCATGTGTTGAGCT+GGG | + | chr1_4:68531131-68531150 | Msa0180560:CDS | 55.0% | |
| CGTCATGTGTTGAGCTGGGA+AGG | + | chr1_4:68531135-68531154 | Msa0180560:CDS | 55.0% | |
| GAATCGAAGTGGACCGGTTG+AGG | + | chr1_4:68531171-68531190 | Msa0180560:CDS | 55.0% | |
| CTTGTCTGTCGCGCCTCAAC+CGG | - | chr1_4:68531187-68531206 | None:intergenic | 60.0% | |
| CTTGTCTGTCGCGCCTCAAC+CGG | - | chr1_4:68531187-68531206 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 68529973 | 68531688 | 68529973 | ID=Msa0180560;Name=Msa0180560 |
| chr1_4 | mRNA | 68529973 | 68531688 | 68529973 | ID=Msa0180560-mRNA-1;Parent=Msa0180560;Name=Msa0180560-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|326 |
| chr1_4 | exon | 68529973 | 68530269 | 68529973 | ID=Msa0180560-mRNA-1:exon:22598;Parent=Msa0180560-mRNA-1 |
| chr1_4 | exon | 68531005 | 68531688 | 68531005 | ID=Msa0180560-mRNA-1:exon:22599;Parent=Msa0180560-mRNA-1 |
| chr1_4 | CDS | 68529973 | 68530269 | 68529973 | ID=Msa0180560-mRNA-1:cds;Parent=Msa0180560-mRNA-1 |
| chr1_4 | CDS | 68531005 | 68531688 | 68531005 | ID=Msa0180560-mRNA-1:cds;Parent=Msa0180560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
