Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179390 | XP_013469825.1 | 88.705 | 363 | 33 | 3 | 1 | 358 | 1 | 360 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179390 | A0A072VR42 | 88.705 | 363 | 33 | 3 | 1 | 358 | 1 | 360 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088170 | Msa0179390 | 0.818896 | 1.542861e-52 | -8.615850e-47 |
| Msa0179390 | Msa0597790 | 0.802242 | 6.155185e-49 | -8.615850e-47 |
| Msa0179390 | Msa0637560 | 0.801323 | 9.503720e-49 | -8.615850e-47 |
| Msa0179390 | Msa0795870 | 0.800882 | 1.170164e-48 | -8.615850e-47 |
| Msa0179390 | Msa1223470 | 0.808963 | 2.392012e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179390 | MtrunA17_Chr1g0205271 | 88.705 | 363 | 33 | 3 | 1 | 358 | 1 | 360 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179390 | AT1G05440.1 | 41.840 | 337 | 172 | 6 | 14 | 335 | 46 | 373 | 8.49e-85 | 262 |
Find 75 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGTATTACTAGATTT+TGG | 0.152439 | 1_4:+66913451 | Msa0179390:three_prime_UTR |
| CTTCATGGATACAACCAAAA+TGG | 0.183129 | 1_4:+66913195 | Msa0179390:CDS |
| ATTGAAGGTGATGATGGTTT+TGG | 0.185757 | 1_4:+66912369 | Msa0179390:CDS |
| GCAAGATGAAGAAAGATTTC+TGG | 0.232024 | 1_4:+66913348 | Msa0179390:CDS |
| ATGGAAGAATCAATGGAAAT+TGG | 0.275671 | 1_4:-66912193 | None:intergenic |
| ACTACTGAGGCACCCCATTT+TGG | 0.276024 | 1_4:-66913209 | None:intergenic |
| TATTCAAGAACCCAAGTATT+AGG | 0.283591 | 1_4:-66913242 | None:intergenic |
| CAATTGAGGAGGTAACAATT+TGG | 0.305174 | 1_4:+66912831 | Msa0179390:CDS |
| AATTGAGGAGGTAACAATTT+GGG | 0.313088 | 1_4:+66912832 | Msa0179390:CDS |
| AATTTGGTTAAGGCACTATT+AGG | 0.333805 | 1_4:-66912130 | None:intergenic |
| AATACTATTGACTTCAAGTT+GGG | 0.357311 | 1_4:-66913439 | None:intergenic |
| TTCATGGATACAACCAAAAT+GGG | 0.357670 | 1_4:+66913196 | Msa0179390:CDS |
| AAGAAAATCATCAATACAAT+TGG | 0.363470 | 1_4:+66913387 | Msa0179390:CDS |
| CGGACACTAACTATCTTATC+AGG | 0.375119 | 1_4:+66912902 | Msa0179390:CDS |
| GCAAAATTCACAGTTGCAAT+TGG | 0.380706 | 1_4:-66912074 | None:intergenic |
| TCACTACTGGGATGTCTATT+CGG | 0.384798 | 1_4:+66912882 | Msa0179390:CDS |
| ATGTTATGATTAACAATGTT+GGG | 0.391798 | 1_4:-66912166 | None:intergenic |
| TAGAATTGAAAGAAAGGAAA+AGG | 0.396592 | 1_4:+66912312 | Msa0179390:CDS |
| TGAAGATGAGAATTTGGTTA+AGG | 0.411953 | 1_4:-66912140 | None:intergenic |
| CACTATTAGGCATGAGATCA+AGG | 0.415994 | 1_4:-66912117 | None:intergenic |
| TGCAATTAGATCCTAATACT+TGG | 0.426848 | 1_4:+66913231 | Msa0179390:CDS |
| CTCTGGTTTAGGTTTATTGA+AGG | 0.427099 | 1_4:+66912354 | Msa0179390:CDS |
| ATGGTCTATTATTGAATTCA+AGG | 0.427828 | 1_4:+66912789 | Msa0179390:CDS |
| TTCGGAAGGCGAATACTTCA+TGG | 0.434950 | 1_4:+66913180 | Msa0179390:CDS |
| ACAGCTGGAATGATCACTAC+TGG | 0.448508 | 1_4:+66912869 | Msa0179390:CDS |
| AATGTTATGATTAACAATGT+TGG | 0.449553 | 1_4:-66912167 | None:intergenic |
| AGGTTTATTGAAGGTGATGA+TGG | 0.457190 | 1_4:+66912363 | Msa0179390:CDS |
| GAATTTGGAGGGATTGTGAA+TGG | 0.459066 | 1_4:+66912538 | Msa0179390:CDS |
| GTCAGAGGATATAGTGAAAA+GGG | 0.462251 | 1_4:+66912456 | Msa0179390:CDS |
| CATAAAGATCAAGATTTGAA+TGG | 0.462537 | 1_4:+66912493 | Msa0179390:CDS |
| AGCTCAATTGTTGATGGTAA+AGG | 0.463697 | 1_4:+66913272 | Msa0179390:CDS |
| CTTGCAACCAGGGTAGTAGT+AGG | 0.468543 | 1_4:-66912044 | None:intergenic |
| GACAAGTTAGCTATATGATT+CGG | 0.471315 | 1_4:+66913162 | Msa0179390:CDS |
| GAAAGATTTCTGGCAGTTTG+TGG | 0.472904 | 1_4:+66913358 | Msa0179390:CDS |
| GGAGAAAATGGAAGAATCAA+TGG | 0.473186 | 1_4:-66912200 | None:intergenic |
| TGTCAGAGGATATAGTGAAA+AGG | 0.479850 | 1_4:+66912455 | Msa0179390:CDS |
| TAATACTATTGACTTCAAGT+TGG | 0.484823 | 1_4:-66913440 | None:intergenic |
| ATATTGTTTAGTGTTTACTA+AGG | 0.485846 | 1_4:-66913565 | None:intergenic |
| TGGTTCACAACAACAAGCTA+TGG | 0.488760 | 1_4:+66913407 | Msa0179390:CDS |
| TGTTCATAGAATTGAAAGAA+AGG | 0.490935 | 1_4:+66912306 | Msa0179390:CDS |
| GCAATTAGATCCTAATACTT+GGG | 0.494411 | 1_4:+66913232 | Msa0179390:CDS |
| CAAAGGAGCTCAATTGTTGA+TGG | 0.495396 | 1_4:+66913266 | Msa0179390:CDS |
| GTAGCTTTACTGATAAATCA+TGG | 0.496205 | 1_4:+66912575 | Msa0179390:CDS |
| TTTATCAAGGGTTGTTTCTG+TGG | 0.502417 | 1_4:+66912417 | Msa0179390:CDS |
| CTTGGGTTCTTGAATATCAA+AGG | 0.503387 | 1_4:+66913249 | Msa0179390:CDS |
| AGAATTGAAAGAAAGGAAAA+GGG | 0.503700 | 1_4:+66912313 | Msa0179390:CDS |
| ACTATATCCTCTGACAAAGA+AGG | 0.518859 | 1_4:-66912448 | None:intergenic |
| GTTGCTGTTTAATAGTGGAA+TGG | 0.518871 | 1_4:+66913137 | Msa0179390:intron |
| GGGTGGCCTCTACAAACAGC+TGG | 0.533908 | 1_4:+66912854 | Msa0179390:CDS |
| TTAGCACTTGACTTGATCAC+AGG | 0.540401 | 1_4:-66912271 | None:intergenic |
| GGAGCTCCTCACAAGAAATG+AGG | 0.560121 | 1_4:-66913503 | None:intergenic |
| GAGGATATAGTGAAAAGGGT+TGG | 0.561715 | 1_4:+66912460 | Msa0179390:CDS |
| ACACCCGAAAAGAGTTATGA+TGG | 0.562321 | 1_4:+66912223 | Msa0179390:CDS |
| GAAAGGAAAAGGGTGAAAAG+AGG | 0.563914 | 1_4:+66912323 | Msa0179390:CDS |
| AACAGCTCCTACTACTACCC+TGG | 0.564936 | 1_4:+66912037 | Msa0179390:CDS |
| ATTGTACAAATCAGCAATTG+AGG | 0.571638 | 1_4:+66912817 | Msa0179390:CDS |
| ATTGAGGAGGTAACAATTTG+GGG | 0.571809 | 1_4:+66912833 | Msa0179390:CDS |
| GACTTGATCACAGGAGTAGA+CGG | 0.579789 | 1_4:-66912262 | None:intergenic |
| CAGCTGGAATGATCACTACT+GGG | 0.580660 | 1_4:+66912870 | Msa0179390:CDS |
| ATCATTCCAGCTGTTTGTAG+AGG | 0.580850 | 1_4:-66912860 | None:intergenic |
| TATAGTGAAAAGGGTTGGTG+AGG | 0.592518 | 1_4:+66912465 | Msa0179390:CDS |
| GAGCTCCTCACAAGAAATGA+GGG | 0.597098 | 1_4:-66913502 | None:intergenic |
| CAAAACCCTCATTTCTTGTG+AGG | 0.597573 | 1_4:+66913497 | Msa0179390:three_prime_UTR |
| GGTTCACAACAACAAGCTAT+GGG | 0.612900 | 1_4:+66913408 | Msa0179390:CDS |
| ATACTATTGACTTCAAGTTG+GGG | 0.624872 | 1_4:-66913438 | None:intergenic |
| ACTATTAGGCATGAGATCAA+GGG | 0.627357 | 1_4:-66912116 | None:intergenic |
| TAAATCATGGAAAATCAACC+AGG | 0.642725 | 1_4:+66912588 | Msa0179390:CDS |
| AGGATCTAATTGCACTACTG+AGG | 0.655302 | 1_4:-66913222 | None:intergenic |
| GCTGTTTAATAGTGGAATGG+TGG | 0.659502 | 1_4:+66913140 | Msa0179390:intron |
| AGTTAGCTATATGATTCGGA+AGG | 0.662338 | 1_4:+66913166 | Msa0179390:CDS |
| CTTATCAGGAAGAGTTACTG+AGG | 0.667601 | 1_4:+66912916 | Msa0179390:CDS |
| GTACAAATCAGCAATTGAGG+AGG | 0.679432 | 1_4:+66912820 | Msa0179390:CDS |
| TTGATGAAGGTGGAATCTCA+TGG | 0.695968 | 1_4:-66911978 | None:intergenic |
| TTGAGGAGGTAACAATTTGG+GGG | 0.703782 | 1_4:+66912834 | Msa0179390:CDS |
| TCATGGATACAACCAAAATG+GGG | 0.715904 | 1_4:+66913197 | Msa0179390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTTATGATTAACAATGTT+GGG | - | chr1_4:66912169-66912188 | None:intergenic | 20.0% |
| !! | AATGTTATGATTAACAATGT+TGG | - | chr1_4:66912170-66912189 | None:intergenic | 20.0% |
| !!! | TTAAAGAACTAGTATTTTCT+TGG | + | chr1_4:66912656-66912675 | Msa0179390:intron | 20.0% |
| !!! | TAAAGAACTAGTATTTTCTT+GGG | + | chr1_4:66912657-66912676 | Msa0179390:intron | 20.0% |
| !! | CATCAACTAAAATTGTATAT+AGG | + | chr1_4:66912766-66912785 | Msa0179390:intron | 20.0% |
| !! | AACTAAAATTGTATATAGGA+TGG | + | chr1_4:66912770-66912789 | Msa0179390:intron | 20.0% |
| !!! | AATAAAAAGGGAAAACATTT+TGG | - | chr1_4:66912950-66912969 | None:intergenic | 20.0% |
| !!! | TTTCCCTTTTTATTTGATTT+AGG | + | chr1_4:66912956-66912975 | Msa0179390:intron | 20.0% |
| !!! | TTCCCTTTTTATTTGATTTA+GGG | + | chr1_4:66912957-66912976 | Msa0179390:intron | 20.0% |
| !! | AAGAAAATCATCAATACAAT+TGG | + | chr1_4:66913387-66913406 | Msa0179390:CDS | 20.0% |
| !!! | TCAATAGTATTACTAGATTT+TGG | + | chr1_4:66913451-66913470 | Msa0179390:three_prime_UTR | 20.0% |
| !! | ATATTGTTTAGTGTTTACTA+AGG | - | chr1_4:66913568-66913587 | None:intergenic | 20.0% |
| !! | ATGTTATGATTAACAATGTT+GGG | - | chr1_4:66912169-66912188 | None:intergenic | 20.0% |
| !! | AATGTTATGATTAACAATGT+TGG | - | chr1_4:66912170-66912189 | None:intergenic | 20.0% |
| !!! | TTAAAGAACTAGTATTTTCT+TGG | + | chr1_4:66912656-66912675 | Msa0179390:intron | 20.0% |
| !!! | TAAAGAACTAGTATTTTCTT+GGG | + | chr1_4:66912657-66912676 | Msa0179390:intron | 20.0% |
| !! | CATCAACTAAAATTGTATAT+AGG | + | chr1_4:66912766-66912785 | Msa0179390:intron | 20.0% |
| !! | AACTAAAATTGTATATAGGA+TGG | + | chr1_4:66912770-66912789 | Msa0179390:intron | 20.0% |
| !!! | AATAAAAAGGGAAAACATTT+TGG | - | chr1_4:66912950-66912969 | None:intergenic | 20.0% |
| !!! | TTTCCCTTTTTATTTGATTT+AGG | + | chr1_4:66912956-66912975 | Msa0179390:intron | 20.0% |
| !!! | TTCCCTTTTTATTTGATTTA+GGG | + | chr1_4:66912957-66912976 | Msa0179390:intron | 20.0% |
| !! | AAGAAAATCATCAATACAAT+TGG | + | chr1_4:66913387-66913406 | Msa0179390:CDS | 20.0% |
| !!! | TCAATAGTATTACTAGATTT+TGG | + | chr1_4:66913451-66913470 | Msa0179390:three_prime_UTR | 20.0% |
| !! | ATATTGTTTAGTGTTTACTA+AGG | - | chr1_4:66913568-66913587 | None:intergenic | 20.0% |
| !!! | TGTTAGATTTTGATTGATGA+AGG | - | chr1_4:66911994-66912013 | None:intergenic | 25.0% |
| ! | TGTTCATAGAATTGAAAGAA+AGG | + | chr1_4:66912306-66912325 | Msa0179390:CDS | 25.0% |
| ! | TAGAATTGAAAGAAAGGAAA+AGG | + | chr1_4:66912312-66912331 | Msa0179390:CDS | 25.0% |
| ! | AGAATTGAAAGAAAGGAAAA+GGG | + | chr1_4:66912313-66912332 | Msa0179390:CDS | 25.0% |
| ! | CATAAAGATCAAGATTTGAA+TGG | + | chr1_4:66912493-66912512 | Msa0179390:CDS | 25.0% |
| ! | ATGGTCTATTATTGAATTCA+AGG | + | chr1_4:66912789-66912808 | Msa0179390:CDS | 25.0% |
| ! | GTCCCTAAATCAAATAAAAA+GGG | - | chr1_4:66912962-66912981 | None:intergenic | 25.0% |
| ! | TGTCCCTAAATCAAATAAAA+AGG | - | chr1_4:66912963-66912982 | None:intergenic | 25.0% |
| !! | CCATTTTATCAAATTATCAC+CGG | - | chr1_4:66912995-66913014 | None:intergenic | 25.0% |
| !! | ACTGATTGAATGTAATGTTT+TGG | + | chr1_4:66913015-66913034 | Msa0179390:intron | 25.0% |
| !!! | TTTTCAAGTATAGGATTTCA+AGG | + | chr1_4:66913318-66913337 | Msa0179390:CDS | 25.0% |
| !!! | AATACTATTGACTTCAAGTT+GGG | - | chr1_4:66913442-66913461 | None:intergenic | 25.0% |
| !!! | TAATACTATTGACTTCAAGT+TGG | - | chr1_4:66913443-66913462 | None:intergenic | 25.0% |
| !!! | TCCAACTTTTTTACTTGTAA+AGG | + | chr1_4:66913523-66913542 | Msa0179390:three_prime_UTR | 25.0% |
| ! | ACCTTTACAAGTAAAAAAGT+TGG | - | chr1_4:66913527-66913546 | None:intergenic | 25.0% |
| !!! | TGTTAGATTTTGATTGATGA+AGG | - | chr1_4:66911994-66912013 | None:intergenic | 25.0% |
| ! | TGTTCATAGAATTGAAAGAA+AGG | + | chr1_4:66912306-66912325 | Msa0179390:CDS | 25.0% |
| ! | TAGAATTGAAAGAAAGGAAA+AGG | + | chr1_4:66912312-66912331 | Msa0179390:CDS | 25.0% |
| ! | AGAATTGAAAGAAAGGAAAA+GGG | + | chr1_4:66912313-66912332 | Msa0179390:CDS | 25.0% |
| ! | CATAAAGATCAAGATTTGAA+TGG | + | chr1_4:66912493-66912512 | Msa0179390:CDS | 25.0% |
| ! | ATGGTCTATTATTGAATTCA+AGG | + | chr1_4:66912789-66912808 | Msa0179390:CDS | 25.0% |
| ! | GTCCCTAAATCAAATAAAAA+GGG | - | chr1_4:66912962-66912981 | None:intergenic | 25.0% |
| ! | TGTCCCTAAATCAAATAAAA+AGG | - | chr1_4:66912963-66912982 | None:intergenic | 25.0% |
| !! | CCATTTTATCAAATTATCAC+CGG | - | chr1_4:66912995-66913014 | None:intergenic | 25.0% |
| !! | ACTGATTGAATGTAATGTTT+TGG | + | chr1_4:66913015-66913034 | Msa0179390:intron | 25.0% |
| !!! | TTTTCAAGTATAGGATTTCA+AGG | + | chr1_4:66913318-66913337 | Msa0179390:CDS | 25.0% |
| !!! | AATACTATTGACTTCAAGTT+GGG | - | chr1_4:66913442-66913461 | None:intergenic | 25.0% |
| !!! | TAATACTATTGACTTCAAGT+TGG | - | chr1_4:66913443-66913462 | None:intergenic | 25.0% |
| !!! | TCCAACTTTTTTACTTGTAA+AGG | + | chr1_4:66913523-66913542 | Msa0179390:three_prime_UTR | 25.0% |
| ! | ACCTTTACAAGTAAAAAAGT+TGG | - | chr1_4:66913527-66913546 | None:intergenic | 25.0% |
| !!! | TAGATTTTGATTGATGAAGG+TGG | - | chr1_4:66911991-66912010 | None:intergenic | 30.0% |
| ! | AATTTGGTTAAGGCACTATT+AGG | - | chr1_4:66912133-66912152 | None:intergenic | 30.0% |
| TGAAGATGAGAATTTGGTTA+AGG | - | chr1_4:66912143-66912162 | None:intergenic | 30.0% | |
| ATGGAAGAATCAATGGAAAT+TGG | - | chr1_4:66912196-66912215 | None:intergenic | 30.0% | |
| ! | TACACCATCATAACTCTTTT+CGG | - | chr1_4:66912230-66912249 | None:intergenic | 30.0% |
| !!! | TTGCTGATGTTGTTTTATCA+AGG | + | chr1_4:66912404-66912423 | Msa0179390:CDS | 30.0% |
| !!! | TGCTGATGTTGTTTTATCAA+GGG | + | chr1_4:66912405-66912424 | Msa0179390:CDS | 30.0% |
| ! | AAAGTTGAAGTTTTTGCAGA+AGG | + | chr1_4:66912516-66912535 | Msa0179390:CDS | 30.0% |
| ! | AAGTTTTTGCAGAAGGAATT+TGG | + | chr1_4:66912523-66912542 | Msa0179390:CDS | 30.0% |
| ! | GTAGCTTTACTGATAAATCA+TGG | + | chr1_4:66912575-66912594 | Msa0179390:CDS | 30.0% |
| TAAATCATGGAAAATCAACC+AGG | + | chr1_4:66912588-66912607 | Msa0179390:CDS | 30.0% | |
| TCTACAAACAATATCATACC+TGG | - | chr1_4:66912609-66912628 | None:intergenic | 30.0% | |
| ATTGTACAAATCAGCAATTG+AGG | + | chr1_4:66912817-66912836 | Msa0179390:CDS | 30.0% | |
| AATTGAGGAGGTAACAATTT+GGG | + | chr1_4:66912832-66912851 | Msa0179390:CDS | 30.0% | |
| CCGGTGATAATTTGATAAAA+TGG | + | chr1_4:66912992-66913011 | Msa0179390:intron | 30.0% | |
| !!! | GTTTTGTTGCTGTTTAATAG+TGG | + | chr1_4:66913132-66913151 | Msa0179390:intron | 30.0% |
| GACAAGTTAGCTATATGATT+CGG | + | chr1_4:66913162-66913181 | Msa0179390:CDS | 30.0% | |
| TTCATGGATACAACCAAAAT+GGG | + | chr1_4:66913196-66913215 | Msa0179390:CDS | 30.0% | |
| TGCAATTAGATCCTAATACT+TGG | + | chr1_4:66913231-66913250 | Msa0179390:CDS | 30.0% | |
| GCAATTAGATCCTAATACTT+GGG | + | chr1_4:66913232-66913251 | Msa0179390:CDS | 30.0% | |
| TATTCAAGAACCCAAGTATT+AGG | - | chr1_4:66913245-66913264 | None:intergenic | 30.0% | |
| !! | ATACTATTGACTTCAAGTTG+GGG | - | chr1_4:66913441-66913460 | None:intergenic | 30.0% |
| !!! | TAGATTTTGATTGATGAAGG+TGG | - | chr1_4:66911991-66912010 | None:intergenic | 30.0% |
| ! | AATTTGGTTAAGGCACTATT+AGG | - | chr1_4:66912133-66912152 | None:intergenic | 30.0% |
| TGAAGATGAGAATTTGGTTA+AGG | - | chr1_4:66912143-66912162 | None:intergenic | 30.0% | |
| ATGGAAGAATCAATGGAAAT+TGG | - | chr1_4:66912196-66912215 | None:intergenic | 30.0% | |
| ! | TACACCATCATAACTCTTTT+CGG | - | chr1_4:66912230-66912249 | None:intergenic | 30.0% |
| !!! | TTGCTGATGTTGTTTTATCA+AGG | + | chr1_4:66912404-66912423 | Msa0179390:CDS | 30.0% |
| !!! | TGCTGATGTTGTTTTATCAA+GGG | + | chr1_4:66912405-66912424 | Msa0179390:CDS | 30.0% |
| ! | AAAGTTGAAGTTTTTGCAGA+AGG | + | chr1_4:66912516-66912535 | Msa0179390:CDS | 30.0% |
| ! | AAGTTTTTGCAGAAGGAATT+TGG | + | chr1_4:66912523-66912542 | Msa0179390:CDS | 30.0% |
| ! | GTAGCTTTACTGATAAATCA+TGG | + | chr1_4:66912575-66912594 | Msa0179390:CDS | 30.0% |
| TAAATCATGGAAAATCAACC+AGG | + | chr1_4:66912588-66912607 | Msa0179390:CDS | 30.0% | |
| TCTACAAACAATATCATACC+TGG | - | chr1_4:66912609-66912628 | None:intergenic | 30.0% | |
| ATTGTACAAATCAGCAATTG+AGG | + | chr1_4:66912817-66912836 | Msa0179390:CDS | 30.0% | |
| AATTGAGGAGGTAACAATTT+GGG | + | chr1_4:66912832-66912851 | Msa0179390:CDS | 30.0% | |
| CCGGTGATAATTTGATAAAA+TGG | + | chr1_4:66912992-66913011 | Msa0179390:intron | 30.0% | |
| !!! | GTTTTGTTGCTGTTTAATAG+TGG | + | chr1_4:66913132-66913151 | Msa0179390:intron | 30.0% |
| GACAAGTTAGCTATATGATT+CGG | + | chr1_4:66913162-66913181 | Msa0179390:CDS | 30.0% | |
| TTCATGGATACAACCAAAAT+GGG | + | chr1_4:66913196-66913215 | Msa0179390:CDS | 30.0% | |
| TGCAATTAGATCCTAATACT+TGG | + | chr1_4:66913231-66913250 | Msa0179390:CDS | 30.0% | |
| GCAATTAGATCCTAATACTT+GGG | + | chr1_4:66913232-66913251 | Msa0179390:CDS | 30.0% | |
| TATTCAAGAACCCAAGTATT+AGG | - | chr1_4:66913245-66913264 | None:intergenic | 30.0% | |
| !! | ATACTATTGACTTCAAGTTG+GGG | - | chr1_4:66913441-66913460 | None:intergenic | 30.0% |
| GCAAAATTCACAGTTGCAAT+TGG | - | chr1_4:66912077-66912096 | None:intergenic | 35.0% | |
| ACTATTAGGCATGAGATCAA+GGG | - | chr1_4:66912119-66912138 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGAAGATGAGAATT+TGG | - | chr1_4:66912149-66912168 | None:intergenic | 35.0% |
| GGAGAAAATGGAAGAATCAA+TGG | - | chr1_4:66912203-66912222 | None:intergenic | 35.0% | |
| ! | ACACCATCATAACTCTTTTC+GGG | - | chr1_4:66912229-66912248 | None:intergenic | 35.0% |
| !!! | GAAAAGAGGTGTTTTTACTC+TGG | + | chr1_4:66912337-66912356 | Msa0179390:CDS | 35.0% |
| !! | AGGTGTTTTTACTCTGGTTT+AGG | + | chr1_4:66912343-66912362 | Msa0179390:CDS | 35.0% |
| ! | CTCTGGTTTAGGTTTATTGA+AGG | + | chr1_4:66912354-66912373 | Msa0179390:CDS | 35.0% |
| AGGTTTATTGAAGGTGATGA+TGG | + | chr1_4:66912363-66912382 | Msa0179390:CDS | 35.0% | |
| !!! | ATTGAAGGTGATGATGGTTT+TGG | + | chr1_4:66912369-66912388 | Msa0179390:CDS | 35.0% |
| !!! | TTGAAGGTGATGATGGTTTT+GGG | + | chr1_4:66912370-66912389 | Msa0179390:CDS | 35.0% |
| !! | TTTATCAAGGGTTGTTTCTG+TGG | + | chr1_4:66912417-66912436 | Msa0179390:CDS | 35.0% |
| ! | TTTTCAACCTTCTTTGTCAG+AGG | + | chr1_4:66912441-66912460 | Msa0179390:CDS | 35.0% |
| ACTATATCCTCTGACAAAGA+AGG | - | chr1_4:66912451-66912470 | None:intergenic | 35.0% | |
| TGTCAGAGGATATAGTGAAA+AGG | + | chr1_4:66912455-66912474 | Msa0179390:CDS | 35.0% | |
| GTCAGAGGATATAGTGAAAA+GGG | + | chr1_4:66912456-66912475 | Msa0179390:CDS | 35.0% | |
| ! | TTTTTGCAGAAGGAATTTGG+AGG | + | chr1_4:66912526-66912545 | Msa0179390:CDS | 35.0% |
| ! | TTTTGCAGAAGGAATTTGGA+GGG | + | chr1_4:66912527-66912546 | Msa0179390:CDS | 35.0% |
| CAATTGAGGAGGTAACAATT+TGG | + | chr1_4:66912831-66912850 | Msa0179390:CDS | 35.0% | |
| ATTGAGGAGGTAACAATTTG+GGG | + | chr1_4:66912833-66912852 | Msa0179390:CDS | 35.0% | |
| TTTAGGGACACAATACAAAC+CGG | + | chr1_4:66912973-66912992 | Msa0179390:intron | 35.0% | |
| TCACGAACACTTTAGATTGA+AGG | - | chr1_4:66913081-66913100 | None:intergenic | 35.0% | |
| !! | GTTGCTGTTTAATAGTGGAA+TGG | + | chr1_4:66913137-66913156 | Msa0179390:intron | 35.0% |
| ! | AGTTAGCTATATGATTCGGA+AGG | + | chr1_4:66913166-66913185 | Msa0179390:CDS | 35.0% |
| CTTCATGGATACAACCAAAA+TGG | + | chr1_4:66913195-66913214 | Msa0179390:CDS | 35.0% | |
| TCATGGATACAACCAAAATG+GGG | + | chr1_4:66913197-66913216 | Msa0179390:CDS | 35.0% | |
| CTTGGGTTCTTGAATATCAA+AGG | + | chr1_4:66913249-66913268 | Msa0179390:CDS | 35.0% | |
| !! | AGCTCAATTGTTGATGGTAA+AGG | + | chr1_4:66913272-66913291 | Msa0179390:CDS | 35.0% |
| !!! | CGTTGGAGATTTTCAAGTAT+AGG | + | chr1_4:66913309-66913328 | Msa0179390:CDS | 35.0% |
| GCAAGATGAAGAAAGATTTC+TGG | + | chr1_4:66913348-66913367 | Msa0179390:CDS | 35.0% | |
| ATCTCATGGTTGAATTCTTG+AGG | - | chr1_4:66911967-66911986 | None:intergenic | 35.0% | |
| GCAAAATTCACAGTTGCAAT+TGG | - | chr1_4:66912077-66912096 | None:intergenic | 35.0% | |
| ACTATTAGGCATGAGATCAA+GGG | - | chr1_4:66912119-66912138 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGAAGATGAGAATT+TGG | - | chr1_4:66912149-66912168 | None:intergenic | 35.0% |
| GGAGAAAATGGAAGAATCAA+TGG | - | chr1_4:66912203-66912222 | None:intergenic | 35.0% | |
| ! | ACACCATCATAACTCTTTTC+GGG | - | chr1_4:66912229-66912248 | None:intergenic | 35.0% |
| !!! | GAAAAGAGGTGTTTTTACTC+TGG | + | chr1_4:66912337-66912356 | Msa0179390:CDS | 35.0% |
| !! | AGGTGTTTTTACTCTGGTTT+AGG | + | chr1_4:66912343-66912362 | Msa0179390:CDS | 35.0% |
| ! | CTCTGGTTTAGGTTTATTGA+AGG | + | chr1_4:66912354-66912373 | Msa0179390:CDS | 35.0% |
| AGGTTTATTGAAGGTGATGA+TGG | + | chr1_4:66912363-66912382 | Msa0179390:CDS | 35.0% | |
| !!! | ATTGAAGGTGATGATGGTTT+TGG | + | chr1_4:66912369-66912388 | Msa0179390:CDS | 35.0% |
| !!! | TTGAAGGTGATGATGGTTTT+GGG | + | chr1_4:66912370-66912389 | Msa0179390:CDS | 35.0% |
| !! | TTTATCAAGGGTTGTTTCTG+TGG | + | chr1_4:66912417-66912436 | Msa0179390:CDS | 35.0% |
| ! | TTTTCAACCTTCTTTGTCAG+AGG | + | chr1_4:66912441-66912460 | Msa0179390:CDS | 35.0% |
| ACTATATCCTCTGACAAAGA+AGG | - | chr1_4:66912451-66912470 | None:intergenic | 35.0% | |
| TGTCAGAGGATATAGTGAAA+AGG | + | chr1_4:66912455-66912474 | Msa0179390:CDS | 35.0% | |
| GTCAGAGGATATAGTGAAAA+GGG | + | chr1_4:66912456-66912475 | Msa0179390:CDS | 35.0% | |
| ! | TTTTTGCAGAAGGAATTTGG+AGG | + | chr1_4:66912526-66912545 | Msa0179390:CDS | 35.0% |
| ! | TTTTGCAGAAGGAATTTGGA+GGG | + | chr1_4:66912527-66912546 | Msa0179390:CDS | 35.0% |
| CAATTGAGGAGGTAACAATT+TGG | + | chr1_4:66912831-66912850 | Msa0179390:CDS | 35.0% | |
| ATTGAGGAGGTAACAATTTG+GGG | + | chr1_4:66912833-66912852 | Msa0179390:CDS | 35.0% | |
| TTTAGGGACACAATACAAAC+CGG | + | chr1_4:66912973-66912992 | Msa0179390:intron | 35.0% | |
| TCACGAACACTTTAGATTGA+AGG | - | chr1_4:66913081-66913100 | None:intergenic | 35.0% | |
| !! | GTTGCTGTTTAATAGTGGAA+TGG | + | chr1_4:66913137-66913156 | Msa0179390:intron | 35.0% |
| ! | AGTTAGCTATATGATTCGGA+AGG | + | chr1_4:66913166-66913185 | Msa0179390:CDS | 35.0% |
| CTTCATGGATACAACCAAAA+TGG | + | chr1_4:66913195-66913214 | Msa0179390:CDS | 35.0% | |
| TCATGGATACAACCAAAATG+GGG | + | chr1_4:66913197-66913216 | Msa0179390:CDS | 35.0% | |
| CTTGGGTTCTTGAATATCAA+AGG | + | chr1_4:66913249-66913268 | Msa0179390:CDS | 35.0% | |
| !! | AGCTCAATTGTTGATGGTAA+AGG | + | chr1_4:66913272-66913291 | Msa0179390:CDS | 35.0% |
| !!! | CGTTGGAGATTTTCAAGTAT+AGG | + | chr1_4:66913309-66913328 | Msa0179390:CDS | 35.0% |
| GCAAGATGAAGAAAGATTTC+TGG | + | chr1_4:66913348-66913367 | Msa0179390:CDS | 35.0% | |
| TTGATGAAGGTGGAATCTCA+TGG | - | chr1_4:66911981-66912000 | None:intergenic | 40.0% | |
| !! | AGTAGTAGGAGCTGTTTTCA+TGG | - | chr1_4:66912033-66912052 | None:intergenic | 40.0% |
| CACTATTAGGCATGAGATCA+AGG | - | chr1_4:66912120-66912139 | None:intergenic | 40.0% | |
| !!! | ATCATAACTCTTTTCGGGTG+TGG | - | chr1_4:66912224-66912243 | None:intergenic | 40.0% |
| ACACCCGAAAAGAGTTATGA+TGG | + | chr1_4:66912223-66912242 | Msa0179390:CDS | 40.0% | |
| ! | TTAGCACTTGACTTGATCAC+AGG | - | chr1_4:66912274-66912293 | None:intergenic | 40.0% |
| GAAAGGAAAAGGGTGAAAAG+AGG | + | chr1_4:66912323-66912342 | Msa0179390:CDS | 40.0% | |
| !!! | TGAAGGTGATGATGGTTTTG+GGG | + | chr1_4:66912371-66912390 | Msa0179390:CDS | 40.0% |
| GAGGATATAGTGAAAAGGGT+TGG | + | chr1_4:66912460-66912479 | Msa0179390:CDS | 40.0% | |
| !! | TATAGTGAAAAGGGTTGGTG+AGG | + | chr1_4:66912465-66912484 | Msa0179390:CDS | 40.0% |
| GAATTTGGAGGGATTGTGAA+TGG | + | chr1_4:66912538-66912557 | Msa0179390:CDS | 40.0% | |
| GTACAAATCAGCAATTGAGG+AGG | + | chr1_4:66912820-66912839 | Msa0179390:CDS | 40.0% | |
| TTGAGGAGGTAACAATTTGG+GGG | + | chr1_4:66912834-66912853 | Msa0179390:CDS | 40.0% | |
| ATCATTCCAGCTGTTTGTAG+AGG | - | chr1_4:66912863-66912882 | None:intergenic | 40.0% | |
| TCACTACTGGGATGTCTATT+CGG | + | chr1_4:66912882-66912901 | Msa0179390:CDS | 40.0% | |
| CGGACACTAACTATCTTATC+AGG | + | chr1_4:66912902-66912921 | Msa0179390:CDS | 40.0% | |
| CTTATCAGGAAGAGTTACTG+AGG | + | chr1_4:66912916-66912935 | Msa0179390:CDS | 40.0% | |
| GTCTAACATTAGTCGCACAT+CGG | + | chr1_4:66913050-66913069 | Msa0179390:intron | 40.0% | |
| ! | GCTGTTTAATAGTGGAATGG+TGG | + | chr1_4:66913140-66913159 | Msa0179390:intron | 40.0% |
| AGGATCTAATTGCACTACTG+AGG | - | chr1_4:66913225-66913244 | None:intergenic | 40.0% | |
| CAAAGGAGCTCAATTGTTGA+TGG | + | chr1_4:66913266-66913285 | Msa0179390:CDS | 40.0% | |
| ! | AGGATTGTTTTCTACAGCGT+TGG | + | chr1_4:66913292-66913311 | Msa0179390:CDS | 40.0% |
| !! | GAAAGATTTCTGGCAGTTTG+TGG | + | chr1_4:66913358-66913377 | Msa0179390:CDS | 40.0% |
| TGGTTCACAACAACAAGCTA+TGG | + | chr1_4:66913407-66913426 | Msa0179390:CDS | 40.0% | |
| GGTTCACAACAACAAGCTAT+GGG | + | chr1_4:66913408-66913427 | Msa0179390:CDS | 40.0% | |
| CAAAACCCTCATTTCTTGTG+AGG | + | chr1_4:66913497-66913516 | Msa0179390:three_prime_UTR | 40.0% | |
| TTGATGAAGGTGGAATCTCA+TGG | - | chr1_4:66911981-66912000 | None:intergenic | 40.0% | |
| !! | AGTAGTAGGAGCTGTTTTCA+TGG | - | chr1_4:66912033-66912052 | None:intergenic | 40.0% |
| CACTATTAGGCATGAGATCA+AGG | - | chr1_4:66912120-66912139 | None:intergenic | 40.0% | |
| !!! | ATCATAACTCTTTTCGGGTG+TGG | - | chr1_4:66912224-66912243 | None:intergenic | 40.0% |
| ACACCCGAAAAGAGTTATGA+TGG | + | chr1_4:66912223-66912242 | Msa0179390:CDS | 40.0% | |
| ! | TTAGCACTTGACTTGATCAC+AGG | - | chr1_4:66912274-66912293 | None:intergenic | 40.0% |
| GAAAGGAAAAGGGTGAAAAG+AGG | + | chr1_4:66912323-66912342 | Msa0179390:CDS | 40.0% | |
| !!! | TGAAGGTGATGATGGTTTTG+GGG | + | chr1_4:66912371-66912390 | Msa0179390:CDS | 40.0% |
| GAGGATATAGTGAAAAGGGT+TGG | + | chr1_4:66912460-66912479 | Msa0179390:CDS | 40.0% | |
| !! | TATAGTGAAAAGGGTTGGTG+AGG | + | chr1_4:66912465-66912484 | Msa0179390:CDS | 40.0% |
| GAATTTGGAGGGATTGTGAA+TGG | + | chr1_4:66912538-66912557 | Msa0179390:CDS | 40.0% | |
| GTACAAATCAGCAATTGAGG+AGG | + | chr1_4:66912820-66912839 | Msa0179390:CDS | 40.0% | |
| TTGAGGAGGTAACAATTTGG+GGG | + | chr1_4:66912834-66912853 | Msa0179390:CDS | 40.0% | |
| ATCATTCCAGCTGTTTGTAG+AGG | - | chr1_4:66912863-66912882 | None:intergenic | 40.0% | |
| TCACTACTGGGATGTCTATT+CGG | + | chr1_4:66912882-66912901 | Msa0179390:CDS | 40.0% | |
| CGGACACTAACTATCTTATC+AGG | + | chr1_4:66912902-66912921 | Msa0179390:CDS | 40.0% | |
| CTTATCAGGAAGAGTTACTG+AGG | + | chr1_4:66912916-66912935 | Msa0179390:CDS | 40.0% | |
| GTCTAACATTAGTCGCACAT+CGG | + | chr1_4:66913050-66913069 | Msa0179390:intron | 40.0% | |
| ! | GCTGTTTAATAGTGGAATGG+TGG | + | chr1_4:66913140-66913159 | Msa0179390:intron | 40.0% |
| AGGATCTAATTGCACTACTG+AGG | - | chr1_4:66913225-66913244 | None:intergenic | 40.0% | |
| CAAAGGAGCTCAATTGTTGA+TGG | + | chr1_4:66913266-66913285 | Msa0179390:CDS | 40.0% | |
| ! | AGGATTGTTTTCTACAGCGT+TGG | + | chr1_4:66913292-66913311 | Msa0179390:CDS | 40.0% |
| !! | GAAAGATTTCTGGCAGTTTG+TGG | + | chr1_4:66913358-66913377 | Msa0179390:CDS | 40.0% |
| TGGTTCACAACAACAAGCTA+TGG | + | chr1_4:66913407-66913426 | Msa0179390:CDS | 40.0% | |
| GGTTCACAACAACAAGCTAT+GGG | + | chr1_4:66913408-66913427 | Msa0179390:CDS | 40.0% | |
| CAAAACCCTCATTTCTTGTG+AGG | + | chr1_4:66913497-66913516 | Msa0179390:three_prime_UTR | 40.0% | |
| ! | TGGCGTTTTTCTTGCAACCA+GGG | - | chr1_4:66912057-66912076 | None:intergenic | 45.0% |
| ! | TTGGCGTTTTTCTTGCAACC+AGG | - | chr1_4:66912058-66912077 | None:intergenic | 45.0% |
| !!! | CTTTTCGGGTGTGGAGAAAA+TGG | - | chr1_4:66912215-66912234 | None:intergenic | 45.0% |
| GACTTGATCACAGGAGTAGA+CGG | - | chr1_4:66912265-66912284 | None:intergenic | 45.0% | |
| !!! | GAAGGTGATGATGGTTTTGG+GGG | + | chr1_4:66912372-66912391 | Msa0179390:CDS | 45.0% |
| ACAGCTGGAATGATCACTAC+TGG | + | chr1_4:66912869-66912888 | Msa0179390:CDS | 45.0% | |
| CAGCTGGAATGATCACTACT+GGG | + | chr1_4:66912870-66912889 | Msa0179390:CDS | 45.0% | |
| TTCGGAAGGCGAATACTTCA+TGG | + | chr1_4:66913180-66913199 | Msa0179390:CDS | 45.0% | |
| GAGCTCCTCACAAGAAATGA+GGG | - | chr1_4:66913505-66913524 | None:intergenic | 45.0% | |
| ! | TGGCGTTTTTCTTGCAACCA+GGG | - | chr1_4:66912057-66912076 | None:intergenic | 45.0% |
| ! | TTGGCGTTTTTCTTGCAACC+AGG | - | chr1_4:66912058-66912077 | None:intergenic | 45.0% |
| !!! | CTTTTCGGGTGTGGAGAAAA+TGG | - | chr1_4:66912215-66912234 | None:intergenic | 45.0% |
| GACTTGATCACAGGAGTAGA+CGG | - | chr1_4:66912265-66912284 | None:intergenic | 45.0% | |
| !!! | GAAGGTGATGATGGTTTTGG+GGG | + | chr1_4:66912372-66912391 | Msa0179390:CDS | 45.0% |
| ACAGCTGGAATGATCACTAC+TGG | + | chr1_4:66912869-66912888 | Msa0179390:CDS | 45.0% | |
| CAGCTGGAATGATCACTACT+GGG | + | chr1_4:66912870-66912889 | Msa0179390:CDS | 45.0% | |
| TTCGGAAGGCGAATACTTCA+TGG | + | chr1_4:66913180-66913199 | Msa0179390:CDS | 45.0% | |
| GAGCTCCTCACAAGAAATGA+GGG | - | chr1_4:66913505-66913524 | None:intergenic | 45.0% | |
| AACAGCTCCTACTACTACCC+TGG | + | chr1_4:66912037-66912056 | Msa0179390:CDS | 50.0% | |
| CTTGCAACCAGGGTAGTAGT+AGG | - | chr1_4:66912047-66912066 | None:intergenic | 50.0% | |
| AGGAGGTAACAATTTGGGGG+TGG | + | chr1_4:66912837-66912856 | Msa0179390:CDS | 50.0% | |
| !! | ACTACTGAGGCACCCCATTT+TGG | - | chr1_4:66913212-66913231 | None:intergenic | 50.0% |
| GGAGCTCCTCACAAGAAATG+AGG | - | chr1_4:66913506-66913525 | None:intergenic | 50.0% | |
| AACAGCTCCTACTACTACCC+TGG | + | chr1_4:66912037-66912056 | Msa0179390:CDS | 50.0% | |
| CTTGCAACCAGGGTAGTAGT+AGG | - | chr1_4:66912047-66912066 | None:intergenic | 50.0% | |
| AGGAGGTAACAATTTGGGGG+TGG | + | chr1_4:66912837-66912856 | Msa0179390:CDS | 50.0% | |
| !! | ACTACTGAGGCACCCCATTT+TGG | - | chr1_4:66913212-66913231 | None:intergenic | 50.0% |
| GGAGCTCCTCACAAGAAATG+AGG | - | chr1_4:66913506-66913525 | None:intergenic | 50.0% | |
| GGGTGGCCTCTACAAACAGC+TGG | + | chr1_4:66912854-66912873 | Msa0179390:CDS | 60.0% | |
| GGGTGGCCTCTACAAACAGC+TGG | + | chr1_4:66912854-66912873 | Msa0179390:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66911967 | 66913598 | 66911967 | ID=Msa0179390;Name=Msa0179390 |
| chr1_4 | mRNA | 66911967 | 66913598 | 66911967 | ID=Msa0179390-mRNA-1;Parent=Msa0179390;Name=Msa0179390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=13|1|1|1|1|1|3|150|358 |
| chr1_4 | exon | 66911967 | 66912609 | 66911967 | ID=Msa0179390-mRNA-1:exon:21975;Parent=Msa0179390-mRNA-1 |
| chr1_4 | exon | 66912788 | 66912937 | 66912788 | ID=Msa0179390-mRNA-1:exon:21976;Parent=Msa0179390-mRNA-1 |
| chr1_4 | exon | 66913152 | 66913598 | 66913152 | ID=Msa0179390-mRNA-1:exon:21977;Parent=Msa0179390-mRNA-1 |
| chr1_4 | five_prime_UTR | 66911967 | 66911979 | 66911967 | ID=Msa0179390-mRNA-1:five_prime_utr;Parent=Msa0179390-mRNA-1 |
| chr1_4 | CDS | 66911980 | 66912609 | 66911980 | ID=Msa0179390-mRNA-1:cds;Parent=Msa0179390-mRNA-1 |
| chr1_4 | CDS | 66912788 | 66912937 | 66912788 | ID=Msa0179390-mRNA-1:cds;Parent=Msa0179390-mRNA-1 |
| chr1_4 | CDS | 66913152 | 66913448 | 66913152 | ID=Msa0179390-mRNA-1:cds;Parent=Msa0179390-mRNA-1 |
| chr1_4 | three_prime_UTR | 66913449 | 66913598 | 66913449 | ID=Msa0179390-mRNA-1:three_prime_utr;Parent=Msa0179390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
