AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0088460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088460 MtrunA17_Chr1g0205571 96.870 607 18 1 1 607 3 608 0.0 1222
Msa0088460 MtrunA17_Chr4g0065981 54.950 606 266 3 3 605 7 608 0.0 712
Msa0088460 MtrunA17_Chr4g0065961 54.770 608 263 4 3 605 1 601 0.0 692
Msa0088460 MtrunA17_Chr1g0205541 50.249 603 288 3 5 607 18 608 0.0 653
Msa0088460 MtrunA17_Chr4g0065991 61.261 444 171 1 164 607 1 443 0.0 590
Msa0088460 MtrunA17_Chr3g0119641 45.347 591 308 9 26 607 78 662 8.31e-178 521
Msa0088460 MtrunA17_Chr4g0023331 64.928 345 120 1 261 605 5 348 7.55e-167 482
Msa0088460 MtrunA17_Chr4g0023321 44.615 260 138 3 3 260 7 262 2.24e-71 231
Msa0088460 MtrunA17_Chr3g0117081 28.503 628 383 23 26 604 73 683 1.69e-62 220
Msa0088460 MtrunA17_Chr5g0412801 28.185 628 386 20 26 604 44 655 1.07e-57 206
Msa0088460 MtrunA17_Chr8g0368011 28.571 497 303 16 26 481 82 567 3.90e-49 181
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088460 AT1G31690.1 59.898 586 230 4 25 607 26 609 0.0 750
Msa0088460 AT1G31710.1 57.143 588 244 5 26 607 28 613 0.0 720
Msa0088460 AT1G31670.1 57.070 587 229 7 25 607 106 673 0.0 706
Msa0088460 AT4G14940.1 50.000 602 287 5 10 607 8 599 0.0 622
Msa0088460 AT4G12290.2 44.908 599 304 10 26 607 82 671 4.25e-180 525
Msa0088460 AT4G12290.1 44.908 599 304 10 26 607 82 671 5.17e-179 525
Msa0088460 AT1G62810.1 44.574 599 316 9 17 607 53 643 6.62e-178 521
Msa0088460 AT3G43670.1 41.391 604 326 10 18 607 35 624 2.90e-164 485
Msa0088460 AT4G12270.1 41.192 386 187 10 26 385 84 455 2.60e-92 292
Msa0088460 AT4G12280.1 50.000 226 105 2 390 607 5 230 3.51e-71 232
Msa0088460 AT2G42490.1 27.955 626 389 19 26 604 80 690 1.46e-61 218

Find 176 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGGCTTACTGGTATATT+AGG 0.165498 1_2:-69546597 Msa0088460:CDS
ATTGATGCTAAAGAAATTAT+TGG 0.173562 1_2:+69547505 None:intergenic
CACCTTTGTCAAGACAAATT+TGG 0.177990 1_2:-69546433 Msa0088460:CDS
TTAAAATAGGTTGGGCTTAC+TGG 0.179307 1_2:-69546606 Msa0088460:intron
TTTACTGATCAGATCAAATA+TGG 0.188193 1_2:+69545631 None:intergenic
CACTCTTGTTGTATGATCTT+TGG 0.195594 1_2:+69550070 None:intergenic
ACAAAACAAGGAAATCAAAT+TGG 0.202546 1_2:-69546267 Msa0088460:CDS
CCGTTTGGTCCAAAGCTTAA+AGG 0.225115 1_2:-69549345 Msa0088460:CDS
CTTTGATCAGTTGGGCCAAT+TGG 0.227450 1_2:-69547561 Msa0088460:intron
TACTTTGATTGTGGTGAATA+TGG 0.233955 1_2:-69547376 Msa0088460:CDS
TACTCAGTTCCTTCAGCTTT+TGG 0.241847 1_2:+69549390 None:intergenic
CTTTAGCAGTTTGGAGTCTA+AGG 0.250428 1_2:-69546080 Msa0088460:CDS
AGGATTCCTCTCAAAGAAAT+TGG 0.255874 1_2:+69545806 None:intergenic
TACTGGTATATTAGGGATTA+AGG 0.267723 1_2:-69546589 Msa0088460:CDS
AAAGAAATCACCACTTCATT+TGG 0.267968 1_2:+69547178 None:intergenic
CTTGAATGTCGAATCCTAAA+TGG 0.275025 1_2:+69547533 None:intergenic
TGAGCAAAGCCAAAATTTAA+TGG 0.282624 1_2:+69546052 None:intergenic
ATTGGGTACCGTTTGCTTCC+AGG 0.303677 1_2:-69546249 Msa0088460:CDS
TTCTTTGATTTGATCTGTAT+TGG 0.307370 1_2:+69546554 None:intergenic
AGAACAAGGATATTGTATTA+TGG 0.321872 1_2:-69545914 Msa0088460:three_prime_UTR
AGCAAAAGTGGATGCACAAT+TGG 0.336397 1_2:+69546225 None:intergenic
TATCTTGACCTTGACATTGA+TGG 0.340459 1_2:-69546465 Msa0088460:CDS
AAGGTGAGTCCATTAAATTT+TGG 0.347198 1_2:-69546061 Msa0088460:exon
TACATAGTTGACTACTTAAC+TGG 0.350394 1_2:-69550098 Msa0088460:five_prime_UTR
CGAATGTTTAAACGGTTCAT+AGG 0.351625 1_2:+69549632 None:intergenic
GTGAGAAATTGTTAATGTTT+TGG 0.355532 1_2:-69545977 Msa0088460:three_prime_UTR
TTGGGCTTACTGGTATATTA+GGG 0.355547 1_2:-69546596 Msa0088460:CDS
TTGGTATGATTTGAGGATTA+TGG 0.360195 1_2:+69549926 None:intergenic
GTGATGATACTTTAGCAGTT+TGG 0.361600 1_2:-69546089 Msa0088460:CDS
AGGAATATGACTGCATTCTA+TGG 0.363674 1_2:+69549995 None:intergenic
CAATACCTAGGAAAAGTTAT+TGG 0.365047 1_2:-69546386 Msa0088460:CDS
ACAGATATGCCTTTAAGCTT+TGG 0.374151 1_2:+69549336 None:intergenic
AAAGCATTAGATATCTTAAC+AGG 0.379099 1_2:+69547259 None:intergenic
AGGTGGTGGAAGAAGAGTTT+TGG 0.380559 1_2:+69549812 None:intergenic
AATGTCAAGGTCAAGATAAT+AGG 0.382154 1_2:+69546470 None:intergenic
ACCATTCTTCACTTGGGTCT+TGG 0.384600 1_2:+69547410 None:intergenic
TTTGATCAGTTGGGCCAATT+GGG 0.389327 1_2:-69547560 Msa0088460:intron
AAGAAATCACCACTTCATTT+GGG 0.391853 1_2:+69547179 None:intergenic
GATGATTATCCACAAATTAG+AGG 0.394794 1_2:-69546198 Msa0088460:CDS
CATACAACAAAACTGAGAAA+TGG 0.397433 1_2:-69546143 Msa0088460:CDS
GTGAATGCACCTCTAATTTG+TGG 0.399902 1_2:+69546189 None:intergenic
CTTGATGAAATGAGAATTGT+TGG 0.407335 1_2:-69549441 Msa0088460:CDS
ATTTCATCATGTTCCTTCTC+AGG 0.409173 1_2:-69545880 Msa0088460:three_prime_UTR
TTGATTTCTGAAGGTGTTAG+AGG 0.415988 1_2:+69549960 None:intergenic
TTCTTCAACGAATGTTTAAA+CGG 0.416479 1_2:+69549624 None:intergenic
CCACTCAACGTAGGCATGAC+TGG 0.418913 1_2:+69545849 None:intergenic
TCTTCACTTGGGTCTTGGTA+TGG 0.419526 1_2:+69547415 None:intergenic
GTCAAGCCTTTGTCATAGTA+AGG 0.426454 1_2:-69549788 Msa0088460:CDS
AAAAGTGAGATTGTGGTGTT+TGG 0.426480 1_2:+69549902 None:intergenic
TTGGGCCAATGCATAGGCTT+TGG 0.427838 1_2:+69545765 None:intergenic
CCATCCAAGGTCACTCCGTC+AGG 0.427909 1_2:-69549287 Msa0088460:intron
GTGTAATACCATTCTTCACT+TGG 0.433020 1_2:+69547403 None:intergenic
GATTGTGGTGAATATGGCTT+TGG 0.433096 1_2:-69547370 Msa0088460:CDS
ACTATGACTACGTTATAGAT+TGG 0.433768 1_2:-69547020 Msa0088460:CDS
TGAATTGAATGTGTAGGGAT+AGG 0.437195 1_2:-69545944 Msa0088460:three_prime_UTR
GTTTGGTTTGGTATGATTTG+AGG 0.437353 1_2:+69549919 None:intergenic
ATACAACAAAACTGAGAAAT+GGG 0.441699 1_2:-69546142 Msa0088460:CDS
GTGAAGTGTTATTACAAGAA+TGG 0.446073 1_2:-69549516 Msa0088460:CDS
CCAAGTGGTAGCATCAAACT+TGG 0.451289 1_2:-69546988 Msa0088460:CDS
ATCCTTTGTATAGTACTTCA+CGG 0.458399 1_2:+69547458 None:intergenic
GGCTACCCTATCCTTACCTT+TGG 0.459203 1_2:-69549687 Msa0088460:CDS
TGAGATTGTGGTGTTTGGTT+TGG 0.467176 1_2:+69549907 None:intergenic
GATTGAATGAGAGGTTTGTC+GGG 0.468617 1_2:+69549858 None:intergenic
TTACTGATCAGATCAAATAT+GGG 0.471418 1_2:+69545632 None:intergenic
GTTAGAGGGTCAAGTGGGTG+AGG 0.473682 1_2:+69549975 None:intergenic
CAAGATAATAGGTAAAGAAA+TGG 0.475626 1_2:+69546481 None:intergenic
GGATAGGGAGATTGAGAACA+AGG 0.479632 1_2:-69545928 Msa0088460:three_prime_UTR
TAATCATCAGTTAGCAAAAG+TGG 0.479949 1_2:+69546213 None:intergenic
TGATTGAATGAGAGGTTTGT+CGG 0.481894 1_2:+69549857 None:intergenic
TGTTCACCAAAGGTAAGGAT+AGG 0.481924 1_2:+69549681 None:intergenic
CAAAACAAGGAAATCAAATT+GGG 0.482146 1_2:-69546266 Msa0088460:CDS
TCCTAAATGGAAAACCCAAT+TGG 0.486397 1_2:+69547546 None:intergenic
AAGTTATTGGACTGTTGTAA+AGG 0.495057 1_2:-69546373 Msa0088460:CDS
ATTGTATTATGGCACACAAT+GGG 0.500762 1_2:-69545903 Msa0088460:three_prime_UTR
GCAAAAGTGGATGCACAATT+GGG 0.501386 1_2:+69546226 None:intergenic
TCTAAGATGAAGCCACCGTT+TGG 0.502594 1_2:-69549360 Msa0088460:CDS
TTCCTCTCAAAGAAATTGGT+TGG 0.505842 1_2:+69545810 None:intergenic
AGTGGATGCACAATTGGGCC+TGG 0.506196 1_2:+69546231 None:intergenic
CCTTTAAGCTTTGGACCAAA+CGG 0.506349 1_2:+69549345 None:intergenic
TACACAACCTACTTTGATTG+TGG 0.507919 1_2:-69547385 Msa0088460:CDS
CTATGACTACGTTATAGATT+GGG 0.508181 1_2:-69547019 Msa0088460:CDS
ATTTGTCTTGACAAAGGTGT+TGG 0.508980 1_2:+69546437 None:intergenic
TTTGTATGCAAGACCATTGG+AGG 0.509999 1_2:-69549484 Msa0088460:CDS
GAATTGAATGTGTAGGGATA+GGG 0.511193 1_2:-69545943 Msa0088460:three_prime_UTR
TGTAATACCATTCTTCACTT+GGG 0.512744 1_2:+69547404 None:intergenic
GGTATATTAGGGATTAAGGC+AGG 0.513268 1_2:-69546585 Msa0088460:CDS
GACCAACCAATTTCTTTGAG+AGG 0.513325 1_2:-69545812 Msa0088460:three_prime_UTR
ACCAAGACCCAAGTGAAGAA+TGG 0.525685 1_2:-69547411 Msa0088460:CDS
TGGTTTGTTCACCAAAGGTA+AGG 0.529144 1_2:+69549676 None:intergenic
ACAAACCTCTCATTCAATCA+TGG 0.531898 1_2:-69549854 Msa0088460:CDS
ACAAAGGCTTGACGAGGTGG+TGG 0.532967 1_2:+69549798 None:intergenic
ATTACCTGACGGAGTGACCT+TGG 0.533638 1_2:+69549283 None:intergenic
CAGTAAAATTCCTATGTGAC+TGG 0.533735 1_2:-69545615 Msa0088460:three_prime_UTR
TTGGAACCTTACTATGACAA+AGG 0.533882 1_2:+69549782 None:intergenic
TGTAAGCTTAATAGTGAGAT+CGG 0.543713 1_2:-69547058 Msa0088460:CDS
CATTCACTAATTATAATGTG+TGG 0.543852 1_2:-69546173 Msa0088460:CDS
CGGACAAGGTTGATTTCTGA+AGG 0.546012 1_2:+69549951 None:intergenic
TACGGTAGGTTGGTTTGGAG+AGG 0.547168 1_2:-69549562 Msa0088460:CDS
ATTGGAGGGTGTGGCAGCTG+TGG 0.548777 1_2:-69549469 Msa0088460:CDS
GTGAGATCGGTTTCAACTGT+GGG 0.550438 1_2:-69547045 Msa0088460:CDS
CCAAGTTTGATGCTACCACT+TGG 0.551888 1_2:+69546988 None:intergenic
TCTAGGAAGACAGCATTGGC+AGG 0.552138 1_2:+69547310 None:intergenic
TTAAACGGTTCATAGGTGAA+TGG 0.552700 1_2:+69549639 None:intergenic
TAAGAGCATGATGAGGAGAA+AGG 0.552830 1_2:+69550025 None:intergenic
CAAGTGGTAGCATCAAACTT+GGG 0.552885 1_2:-69546987 Msa0088460:CDS
GATAGCCATGATTGAATGAG+AGG 0.554086 1_2:+69549849 None:intergenic
TGCAAGACCATTGGAGGGTG+TGG 0.554369 1_2:-69549478 Msa0088460:CDS
CCAGTCATGCCTACGTTGAG+TGG 0.556192 1_2:-69545849 Msa0088460:three_prime_UTR
TAATGTTGAAAAGTGCAGTT+GGG 0.556487 1_2:+69545747 None:intergenic
AAAAGTCTACGATGATTTCG+AGG 0.556844 1_2:+69549751 None:intergenic
TGAGGATTATGGTGCGGACA+AGG 0.557736 1_2:+69549937 None:intergenic
TGAATTGAATTGAATGTGTA+GGG 0.559845 1_2:-69545949 Msa0088460:three_prime_UTR
CTCCAAATTTGTCTTGACAA+AGG 0.561847 1_2:+69546431 None:intergenic
CTAATGTTGAAAAGTGCAGT+TGG 0.562794 1_2:+69545746 None:intergenic
GTGCAGTTGGGCCAATGCAT+AGG 0.562944 1_2:+69545759 None:intergenic
TAGTTGACTACTTAACTGGT+TGG 0.565558 1_2:-69550094 Msa0088460:five_prime_UTR
GTTCACCAAAGGTAAGGATA+GGG 0.566348 1_2:+69549682 None:intergenic
TGCAGTGGTTTGTTCACCAA+AGG 0.567507 1_2:+69549671 None:intergenic
TAATTTGTATGCAAGACCAT+TGG 0.568732 1_2:-69549487 Msa0088460:CDS
TTGCTAGCTGATAACACCAT+TGG 0.576690 1_2:-69546516 Msa0088460:CDS
ATGAATTGAATTGAATGTGT+AGG 0.579890 1_2:-69545950 Msa0088460:three_prime_UTR
TGATTTCTGAAGGTGTTAGA+GGG 0.580744 1_2:+69549961 None:intergenic
AACAAAACTGAGAAATGGGC+AGG 0.581483 1_2:-69546138 Msa0088460:CDS
ACTGGATAATCTTCCTGAGA+AGG 0.584969 1_2:+69545867 None:intergenic
TAAGCCTTCTGAGTTACTAG+TGG 0.586124 1_2:-69546307 Msa0088460:CDS
ACAGCTGCCACACCCTCCAA+TGG 0.586261 1_2:+69549471 None:intergenic
CAAATCAAAGAAGACATACA+TGG 0.588282 1_2:-69546543 Msa0088460:CDS
GTCATGCCTACGTTGAGTGG+TGG 0.588484 1_2:-69545846 Msa0088460:three_prime_UTR
TGTGGCAGATAACTGAGGTC+AGG 0.588686 1_2:-69547086 Msa0088460:intron
ATTCCAGTGCCAAAAGCTGA+AGG 0.590477 1_2:-69549399 Msa0088460:CDS
GGACCTGGTTTCACCATCCA+AGG 0.591002 1_2:-69549300 Msa0088460:CDS
ACAACAAAGACCAGTCACAT+AGG 0.591135 1_2:+69545605 None:intergenic
TATTGTATTATGGCACACAA+TGG 0.591427 1_2:-69545904 Msa0088460:three_prime_UTR
ATATTCACCACAATCAAAGT+AGG 0.591448 1_2:+69547378 None:intergenic
AAGCAGAATAGTATGCGTCT+AGG 0.592646 1_2:+69547293 None:intergenic
TTAGGATTCGACATTCAAGT+TGG 0.594138 1_2:-69547529 Msa0088460:CDS
AATTGCAATCCCAAATGAAG+TGG 0.594960 1_2:-69547188 Msa0088460:intron
AATCACCAAAGCCTATGCAT+TGG 0.596584 1_2:-69545770 Msa0088460:three_prime_UTR
ATTCACTAATTATAATGTGT+GGG 0.598904 1_2:-69546172 Msa0088460:CDS
AATAGGTAAAGAAATGGTCA+TGG 0.601680 1_2:+69546487 None:intergenic
TGCGTCTAGGAAGACAGCAT+TGG 0.603158 1_2:+69547306 None:intergenic
TGAAAGATCAAACAATACCT+AGG 0.603738 1_2:-69546398 Msa0088460:CDS
CGTAATGAAAAGTGAGATTG+TGG 0.609986 1_2:+69549895 None:intergenic
AAAGTCTACGATGATTTCGA+GGG 0.611099 1_2:+69549752 None:intergenic
CAATTGGGCCTGGAAGCAAA+CGG 0.613823 1_2:+69546241 None:intergenic
GATTGGGAGTTTAAGCCAAG+TGG 0.613885 1_2:-69547003 Msa0088460:CDS
ATCTCAACAAAACTCTACAA+AGG 0.617196 1_2:-69549714 Msa0088460:CDS
TGACCTTGGATGGTGAAACC+AGG 0.621250 1_2:+69549297 None:intergenic
TTGGCAGGACAATCTGTGAA+AGG 0.622053 1_2:+69547325 None:intergenic
GCATACTATTCTGCTTCAGA+TGG 0.624085 1_2:-69547286 Msa0088460:CDS
CCTGACGGAGTGACCTTGGA+TGG 0.627284 1_2:+69549287 None:intergenic
TGGCTTCACCATCAATGTCA+AGG 0.628699 1_2:+69546457 None:intergenic
TTGTATGCAAGACCATTGGA+GGG 0.628719 1_2:-69549483 Msa0088460:CDS
GAAGGTGTTAGAGGGTCAAG+TGG 0.633794 1_2:+69549969 None:intergenic
GCTGATGCAAGAGTCAACAT+TGG 0.634134 1_2:-69546333 Msa0088460:CDS
TTAAGCTTTGGACCAAACGG+TGG 0.635575 1_2:+69549348 None:intergenic
ATGACAAAGGCTTGACGAGG+TGG 0.637143 1_2:+69549795 None:intergenic
TTTACCACTAGTAACTCAGA+AGG 0.641809 1_2:+69546303 None:intergenic
GTATATTAGGGATTAAGGCA+GGG 0.645710 1_2:-69546584 Msa0088460:CDS
AAGTGGTAGCATCAAACTTG+GGG 0.646028 1_2:-69546986 Msa0088460:intron
ATGGTCATGGTAGACACCAA+TGG 0.648331 1_2:+69546500 None:intergenic
AGTGAGATCGGTTTCAACTG+TGG 0.648718 1_2:-69547046 Msa0088460:CDS
GTAAGTCAACATGATGGACC+TGG 0.649655 1_2:-69549315 Msa0088460:CDS
TACCGTGAAGTACTATACAA+AGG 0.653255 1_2:-69547460 Msa0088460:CDS
AAAACTGAGAAATGGGCAGG+AGG 0.656721 1_2:-69546135 Msa0088460:CDS
ACAAAACTCTACAAAGGACA+AGG 0.665601 1_2:-69549708 Msa0088460:CDS
TTATATGTTGATCATAGCAG+AGG 0.670339 1_2:-69546111 Msa0088460:CDS
AAGGTGTTAGAGGGTCAAGT+GGG 0.671650 1_2:+69549970 None:intergenic
ATATCTGTAAGTCAACATGA+TGG 0.685391 1_2:-69549321 Msa0088460:CDS
GAATGGTAACTGTGATGCAG+TGG 0.687597 1_2:+69549656 None:intergenic
AGTTACATAAGAGCATGATG+AGG 0.688695 1_2:+69550018 None:intergenic
ACTATGACAAAGGCTTGACG+AGG 0.716443 1_2:+69549792 None:intergenic
TCAAATCCACCACTCAACGT+AGG 0.724526 1_2:+69545840 None:intergenic
ATGATTTGAGGATTATGGTG+CGG 0.736939 1_2:+69549931 None:intergenic
AGTATGCTGGTGATATCATG+TGG 0.737902 1_2:-69547222 Msa0088460:CDS
TTGTGTGTGGCAGATAACTG+AGG 0.795071 1_2:-69547091 Msa0088460:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTCTTTATAATTTTTTTTT+TGG - chr1_2:69546856-69546875 Msa0088460:intron 10.0%
!! TATTCTTAGATATATTATAA+AGG - chr1_2:69546938-69546957 Msa0088460:intron 10.0%
!! ATTCAAATTATAAAATGATA+TGG + chr1_2:69547617-69547636 None:intergenic 10.0%
!! ATATTAATTAAGAATTGAAA+AGG + chr1_2:69547707-69547726 None:intergenic 10.0%
!!! TAATTGCTATATTTTAAAAT+AGG - chr1_2:69549080-69549099 Msa0088460:intron 10.0%
!! TAATGCATAATATTAGTATA+AGG + chr1_2:69546742-69546761 None:intergenic 15.0%
!! GGTAAAATATCATTTATAAT+AGG + chr1_2:69547531-69547550 None:intergenic 15.0%
!!! GTTTTTAAATTCAATATTAC+TGG + chr1_2:69547747-69547766 None:intergenic 15.0%
!!! TTACTTGTTATAATTTTGTT+GGG - chr1_2:69549023-69549042 Msa0088460:intron 15.0%
!! TGTTCTCATTAAAAATTATA+AGG - chr1_2:69549981-69550000 Msa0088460:CDS 15.0%
!! ATATATAAATTAGCGACTAA+TGG - chr1_2:69546500-69546519 Msa0088460:CDS 20.0%
!! AAGGATCAAATTGAATATTT+AGG - chr1_2:69546635-69546654 Msa0088460:intron 20.0%
!!! AATGTTGTCTAATTTTTTTG+TGG - chr1_2:69546694-69546713 Msa0088460:intron 20.0%
!!! CTTCAAACTATGTTTTTTTA+AGG + chr1_2:69546827-69546846 None:intergenic 20.0%
!!! TTTTAAAACTGTTATACTGT+TGG - chr1_2:69546906-69546925 Msa0088460:intron 20.0%
!! AAGGAAAAAAAAATAAGTCA+GGG + chr1_2:69547143-69547162 None:intergenic 20.0%
!! TCTGGAAAAAAAAAATTTGA+AGG + chr1_2:69547162-69547181 None:intergenic 20.0%
!!! AATTTTTCGGAGAAAAAATT+CGG + chr1_2:69547191-69547210 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+CGG + chr1_2:69547204-69547223 None:intergenic 20.0%
!! TAGAAAAACACATTGTTAAT+GGG + chr1_2:69547673-69547692 None:intergenic 20.0%
!! TTAGAAAAACACATTGTTAA+TGG + chr1_2:69547674-69547693 None:intergenic 20.0%
!! TAGAGAAACACATTATTAAT+GGG + chr1_2:69547937-69547956 None:intergenic 20.0%
!! TTAGAGAAACACATTATTAA+TGG + chr1_2:69547938-69547957 None:intergenic 20.0%
!! TAAAAAACTACAATGATTGA+TGG - chr1_2:69548023-69548042 Msa0088460:intron 20.0%
!! TTCATTCATATTAGATATGT+TGG + chr1_2:69548072-69548091 None:intergenic 20.0%
!! ATTGATGCTAAAGAAATTAT+TGG + chr1_2:69548197-69548216 None:intergenic 20.0%
!!! TTTGTTTCTTTAATCAAACT+TGG - chr1_2:69548795-69548814 Msa0088460:intron 20.0%
!!! GTTACTTGTTATAATTTTGT+TGG - chr1_2:69549022-69549041 Msa0088460:intron 20.0%
!!! TGCTATATTTTAAAATAGGT+TGG - chr1_2:69549084-69549103 Msa0088460:intron 20.0%
!!! GCTATATTTTAAAATAGGTT+GGG - chr1_2:69549085-69549104 Msa0088460:intron 20.0%
!!! CCTTGTTTTGTTTTTTTATT+AGG + chr1_2:69549423-69549442 None:intergenic 20.0%
!! CCTAATAAAAAAACAAAACA+AGG - chr1_2:69549420-69549439 Msa0088460:CDS 20.0%
!! ATTCACTAATTATAATGTGT+GGG - chr1_2:69549527-69549546 Msa0088460:CDS 20.0%
!!! AATCTATGTAATTTTCTCAA+GGG - chr1_2:69550018-69550037 Msa0088460:CDS 20.0%
! TTCTTCAACGAATGTTTAAA+CGG + chr1_2:69546078-69546097 None:intergenic 25.0%
! CAAAATTGTTAGGATGAAAT+TGG + chr1_2:69546467-69546486 None:intergenic 25.0%
!!! TCTAATTTTTTTGTGGTGAT+CGG - chr1_2:69546701-69546720 Msa0088460:intron 25.0%
! CATAATATTAGTATAAGGTC+TGG + chr1_2:69546737-69546756 None:intergenic 25.0%
!!! TTTTTAAGGAACTTCAAACT+AGG + chr1_2:69546813-69546832 None:intergenic 25.0%
! TTAACTGATTAAACTTTGCA+GGG + chr1_2:69547428-69547447 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr1_2:69547427-69547446 None:intergenic 25.0%
! AGGAAAAAAAAATAAGTCAG+GGG + chr1_2:69547142-69547161 None:intergenic 25.0%
! GAAGGAAAAAAAAATAAGTC+AGG + chr1_2:69547144-69547163 None:intergenic 25.0%
!!! ATTTTTCGGAGAAAAAATTC+GGG + chr1_2:69547190-69547209 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG - chr1_2:69547327-69547346 Msa0088460:CDS 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG - chr1_2:69547328-69547347 Msa0088460:CDS 25.0%
! TTTAACTGATTAAACTTTGC+AGG - chr1_2:69547427-69547446 Msa0088460:CDS 25.0%
! TTAACTGATTAAACTTTGCA+GGG - chr1_2:69547428-69547447 Msa0088460:CDS 25.0%
!!! TATCTTATTTTTGTGCTAAG+CGG + chr1_2:69547552-69547571 None:intergenic 25.0%
! AAAAACTACAATGATTCTGA+TGG - chr1_2:69547761-69547780 Msa0088460:intron 25.0%
! ATATGTTTAGTTAGAATGCA+AGG + chr1_2:69547864-69547883 None:intergenic 25.0%
!! AAACACATTATTAATGGGTA+TGG + chr1_2:69547932-69547951 None:intergenic 25.0%
! TGTTAATTAAGAGTTTGAAG+AGG + chr1_2:69547971-69547990 None:intergenic 25.0%
!! ACAATTTTCTTTGATCAGTT+GGG - chr1_2:69548130-69548149 Msa0088460:intron 25.0%
!! AAAGCATTAGATATCTTAAC+AGG + chr1_2:69548443-69548462 None:intergenic 25.0%
! TATATATGGCATAACACATT+TGG + chr1_2:69548753-69548772 None:intergenic 25.0%
! AAACAAATGATCCAAATTTC+AGG + chr1_2:69548782-69548801 None:intergenic 25.0%
!!! TTCTTTGATTTGATCTGTAT+TGG + chr1_2:69549148-69549167 None:intergenic 25.0%
! CAAGATAATAGGTAAAGAAA+TGG + chr1_2:69549221-69549240 None:intergenic 25.0%
! ACAAAACAAGGAAATCAAAT+TGG - chr1_2:69549432-69549451 Msa0088460:CDS 25.0%
! CAAAACAAGGAAATCAAATT+GGG - chr1_2:69549433-69549452 Msa0088460:CDS 25.0%
! CATTCACTAATTATAATGTG+TGG - chr1_2:69549526-69549545 Msa0088460:CDS 25.0%
! ATACAACAAAACTGAGAAAT+GGG - chr1_2:69549557-69549576 Msa0088460:CDS 25.0%
!! GTGAGAAATTGTTAATGTTT+TGG - chr1_2:69549722-69549741 Msa0088460:CDS 25.0%
! ATGAATTGAATTGAATGTGT+AGG - chr1_2:69549749-69549768 Msa0088460:CDS 25.0%
! TGAATTGAATTGAATGTGTA+GGG - chr1_2:69549750-69549769 Msa0088460:CDS 25.0%
! AGAACAAGGATATTGTATTA+TGG - chr1_2:69549785-69549804 Msa0088460:CDS 25.0%
!! CAATCTATGTAATTTTCTCA+AGG - chr1_2:69550017-69550036 Msa0088460:CDS 25.0%
! TTACTGATCAGATCAAATAT+GGG + chr1_2:69550070-69550089 None:intergenic 25.0%
! TTTACTGATCAGATCAAATA+TGG + chr1_2:69550071-69550090 None:intergenic 25.0%
TACATAGTTGACTACTTAAC+TGG - chr1_2:69545601-69545620 Msa0088460:three_prime_UTR 30.0%
TTGGTATGATTTGAGGATTA+TGG + chr1_2:69545776-69545795 None:intergenic 30.0%
!! AATCTCACTTTTCATTACGT+TGG - chr1_2:69545808-69545827 Msa0088460:three_prime_UTR 30.0%
!!! GTAGAGTTTTGTTGAGATTA+TGG + chr1_2:69545983-69546002 None:intergenic 30.0%
ATCTCAACAAAACTCTACAA+AGG - chr1_2:69545985-69546004 Msa0088460:three_prime_UTR 30.0%
!!! TGTTTTATGTGCTGCTTTTA+CGG - chr1_2:69546119-69546138 Msa0088460:CDS 30.0%
! GTGAAGTGTTATTACAAGAA+TGG - chr1_2:69546183-69546202 Msa0088460:CDS 30.0%
! TAATTTGTATGCAAGACCAT+TGG - chr1_2:69546212-69546231 Msa0088460:CDS 30.0%
CTTGATGAAATGAGAATTGT+TGG - chr1_2:69546258-69546277 Msa0088460:CDS 30.0%
ATATCTGTAAGTCAACATGA+TGG - chr1_2:69546378-69546397 Msa0088460:CDS 30.0%
TTTACAAGACTATTACCTGA+CGG + chr1_2:69546430-69546449 None:intergenic 30.0%
TGTGATGCAACAAAATTGTT+AGG + chr1_2:69546477-69546496 None:intergenic 30.0%
! GATCCTTCAAAATTTTCTTG+CGG + chr1_2:69546622-69546641 None:intergenic 30.0%
!!! CTAATTTTTTTGTGGTGATC+GGG - chr1_2:69546702-69546721 Msa0088460:intron 30.0%
!!! TAATTTTTTTGTGGTGATCG+GGG - chr1_2:69546703-69546722 Msa0088460:intron 30.0%
ACTTCAAACTAGGTTAAATG+CGG + chr1_2:69546803-69546822 None:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr1_2:69547429-69547448 None:intergenic 30.0%
!! TTTTTGGTAAATTGCTGATG+TGG + chr1_2:69547096-69547115 None:intergenic 30.0%
CATCAGCAATTTACCAAAAA+TGG - chr1_2:69547096-69547115 Msa0088460:intron 30.0%
CAATTTACCAAAAATGGCAT+GGG - chr1_2:69547102-69547121 Msa0088460:intron 30.0%
GAAAAAATTCGGGAAAAATC+TGG + chr1_2:69547180-69547199 None:intergenic 30.0%
AAGGAAAAAAAATAAGCCAG+GGG - chr1_2:69547329-69547348 Msa0088460:CDS 30.0%
TAACTGATTAAACTTTGCAG+GGG - chr1_2:69547429-69547448 Msa0088460:CDS 30.0%
! GTATTTTCAAATATCAGCTG+TGG + chr1_2:69547814-69547833 None:intergenic 30.0%
AAATACTACATGCGTAATAG+TGG - chr1_2:69547828-69547847 Msa0088460:intron 30.0%
AATACTACATGCGTAATAGT+GGG - chr1_2:69547829-69547848 Msa0088460:intron 30.0%
GTTAGAATGCAAGGAAAAAA+TGG + chr1_2:69547855-69547874 None:intergenic 30.0%
! GACAATTTTCTTTGATCAGT+TGG - chr1_2:69548129-69548148 Msa0088460:intron 30.0%
ATCCTTTGTATAGTACTTCA+CGG + chr1_2:69548244-69548263 None:intergenic 30.0%
TGTAATACCATTCTTCACTT+GGG + chr1_2:69548298-69548317 None:intergenic 30.0%
ATATTCACCACAATCAAAGT+AGG + chr1_2:69548324-69548343 None:intergenic 30.0%
TACTTTGATTGTGGTGAATA+TGG - chr1_2:69548323-69548342 Msa0088460:intron 30.0%
AAGAAATCACCACTTCATTT+GGG + chr1_2:69548523-69548542 None:intergenic 30.0%
AAAGAAATCACCACTTCATT+TGG + chr1_2:69548524-69548543 None:intergenic 30.0%
! TTATGACTATTGATTGTGTG+TGG - chr1_2:69548595-69548614 Msa0088460:intron 30.0%
TGTAAGCTTAATAGTGAGAT+CGG - chr1_2:69548641-69548660 Msa0088460:intron 30.0%
ACTATGACTACGTTATAGAT+TGG - chr1_2:69548679-69548698 Msa0088460:intron 30.0%
CTATGACTACGTTATAGATT+GGG - chr1_2:69548680-69548699 Msa0088460:intron 30.0%
ATTTCAGGCATGACTATATA+TGG + chr1_2:69548767-69548786 None:intergenic 30.0%
ATATAGTCATGCCTGAAATT+TGG - chr1_2:69548768-69548787 Msa0088460:intron 30.0%
TTCTCTAGCATTTAAACGTA+AGG + chr1_2:69548933-69548952 None:intergenic 30.0%
AAATGCTAGAGAACATGATA+TGG - chr1_2:69548940-69548959 Msa0088460:intron 30.0%
ACTATCACATTTCCGTTTAA+CGG + chr1_2:69548967-69548986 None:intergenic 30.0%
TACTGGTATATTAGGGATTA+AGG - chr1_2:69549110-69549129 Msa0088460:intron 30.0%
CAAATCAAAGAAGACATACA+TGG - chr1_2:69549156-69549175 Msa0088460:intron 30.0%
AATAGGTAAAGAAATGGTCA+TGG + chr1_2:69549215-69549234 None:intergenic 30.0%
AATGTCAAGGTCAAGATAAT+AGG + chr1_2:69549232-69549251 None:intergenic 30.0%
TGAAAGATCAAACAATACCT+AGG - chr1_2:69549301-69549320 Msa0088460:CDS 30.0%
CAATACCTAGGAAAAGTTAT+TGG - chr1_2:69549313-69549332 Msa0088460:CDS 30.0%
AAGTTATTGGACTGTTGTAA+AGG - chr1_2:69549326-69549345 Msa0088460:CDS 30.0%
TAATCATCAGTTAGCAAAAG+TGG + chr1_2:69549489-69549508 None:intergenic 30.0%
GATGATTATCCACAAATTAG+AGG - chr1_2:69549501-69549520 Msa0088460:CDS 30.0%
!!! CATTTCTCAGTTTTGTTGTA+TGG + chr1_2:69549558-69549577 None:intergenic 30.0%
CATACAACAAAACTGAGAAA+TGG - chr1_2:69549556-69549575 Msa0088460:CDS 30.0%
TTATATGTTGATCATAGCAG+AGG - chr1_2:69549588-69549607 Msa0088460:CDS 30.0%
! AAGGTGAGTCCATTAAATTT+TGG - chr1_2:69549638-69549657 Msa0088460:CDS 30.0%
TGAGCAAAGCCAAAATTTAA+TGG + chr1_2:69549650-69549669 None:intergenic 30.0%
TATTGTATTATGGCACACAA+TGG - chr1_2:69549795-69549814 Msa0088460:CDS 30.0%
ATTGTATTATGGCACACAAT+GGG - chr1_2:69549796-69549815 Msa0088460:CDS 30.0%
!!! GGTGATTTTGTTTTAAGAAC+AGG + chr1_2:69549916-69549935 None:intergenic 30.0%
! TAATGTTGAAAAGTGCAGTT+GGG + chr1_2:69549955-69549974 None:intergenic 30.0%
TAGTTGACTACTTAACTGGT+TGG - chr1_2:69545605-69545624 Msa0088460:three_prime_UTR 35.0%
! CACTCTTGTTGTATGATCTT+TGG + chr1_2:69545632-69545651 None:intergenic 35.0%
! AGTTACATAAGAGCATGATG+AGG + chr1_2:69545684-69545703 None:intergenic 35.0%
AGGAATATGACTGCATTCTA+TGG + chr1_2:69545707-69545726 None:intergenic 35.0%
!! TGATTTCTGAAGGTGTTAGA+GGG + chr1_2:69545741-69545760 None:intergenic 35.0%
!! TTGATTTCTGAAGGTGTTAG+AGG + chr1_2:69545742-69545761 None:intergenic 35.0%
ATGATTTGAGGATTATGGTG+CGG + chr1_2:69545771-69545790 None:intergenic 35.0%
!! GTTTGGTTTGGTATGATTTG+AGG + chr1_2:69545783-69545802 None:intergenic 35.0%
AAAAGTGAGATTGTGGTGTT+TGG + chr1_2:69545800-69545819 None:intergenic 35.0%
CGTAATGAAAAGTGAGATTG+TGG + chr1_2:69545807-69545826 None:intergenic 35.0%
TGATTGAATGAGAGGTTTGT+CGG + chr1_2:69545845-69545864 None:intergenic 35.0%
ACAAACCTCTCATTCAATCA+TGG - chr1_2:69545845-69545864 Msa0088460:three_prime_UTR 35.0%
!!! AAGAGTTTTGGTTTTGGTGT+TGG + chr1_2:69545878-69545897 None:intergenic 35.0%
!!! TGGAAGAAGAGTTTTGGTTT+TGG + chr1_2:69545884-69545903 None:intergenic 35.0%
TTGGAACCTTACTATGACAA+AGG + chr1_2:69545920-69545939 None:intergenic 35.0%
! TGATTTCGAGGGATTGTTTT+TGG + chr1_2:69545939-69545958 None:intergenic 35.0%
AAAGTCTACGATGATTTCGA+GGG + chr1_2:69545950-69545969 None:intergenic 35.0%
AAAAGTCTACGATGATTTCG+AGG + chr1_2:69545951-69545970 None:intergenic 35.0%
ACAAAACTCTACAAAGGACA+AGG - chr1_2:69545991-69546010 Msa0088460:three_prime_UTR 35.0%
TTAAACGGTTCATAGGTGAA+TGG + chr1_2:69546063-69546082 None:intergenic 35.0%
CGAATGTTTAAACGGTTCAT+AGG + chr1_2:69546070-69546089 None:intergenic 35.0%
ACAGATATGCCTTTAAGCTT+TGG + chr1_2:69546366-69546385 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + chr1_2:69547013-69547032 None:intergenic 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + chr1_2:69547014-69547033 None:intergenic 35.0%
TTTGCAGGGGCAAAAAAAAA+AGG + chr1_2:69547029-69547048 None:intergenic 35.0%
GCAATTTACCAAAAATGGCA+TGG - chr1_2:69547101-69547120 Msa0088460:intron 35.0%
CAATTTACCAAAAACGGCAT+GGG + chr1_2:69547369-69547388 None:intergenic 35.0%
CGTCAGCAATTTACCAAAAA+CGG + chr1_2:69547375-69547394 None:intergenic 35.0%
!! TTTTTGGTAAATTGCTGACG+TGG - chr1_2:69547375-69547394 Msa0088460:CDS 35.0%
AAAACTTGCAAGACATGCAT+AGG + chr1_2:69547591-69547610 None:intergenic 35.0%
! AACACATTGTTAATGGGTCA+GGG + chr1_2:69547667-69547686 None:intergenic 35.0%
! AAACACATTGTTAATGGGTC+AGG + chr1_2:69547668-69547687 None:intergenic 35.0%
TTTCAAATATCAGCTGTGGT+TGG + chr1_2:69547810-69547829 None:intergenic 35.0%
TCCTAAATGGAAAACCCAAT+TGG + chr1_2:69548156-69548175 None:intergenic 35.0%
CTTGAATGTCGAATCCTAAA+TGG + chr1_2:69548169-69548188 None:intergenic 35.0%
TTAGGATTCGACATTCAAGT+TGG - chr1_2:69548170-69548189 Msa0088460:intron 35.0%
! TACCGTGAAGTACTATACAA+AGG - chr1_2:69548239-69548258 Msa0088460:intron 35.0%
GTGTAATACCATTCTTCACT+TGG + chr1_2:69548299-69548318 None:intergenic 35.0%
TACACAACCTACTTTGATTG+TGG - chr1_2:69548314-69548333 Msa0088460:intron 35.0%
!! TGCATTTTTGAGAAGTATGC+TGG - chr1_2:69548464-69548483 Msa0088460:intron 35.0%
AATTGCAATCCCAAATGAAG+TGG - chr1_2:69548511-69548530 Msa0088460:intron 35.0%
ACATGATATGGTCCGTTAAA+CGG - chr1_2:69548952-69548971 Msa0088460:intron 35.0%
! TTAAAATAGGTTGGGCTTAC+TGG - chr1_2:69549093-69549112 Msa0088460:intron 35.0%
TTGGGCTTACTGGTATATTA+GGG - chr1_2:69549103-69549122 Msa0088460:intron 35.0%
GTATATTAGGGATTAAGGCA+GGG - chr1_2:69549115-69549134 Msa0088460:intron 35.0%
TATCTTGACCTTGACATTGA+TGG - chr1_2:69549234-69549253 Msa0088460:intron 35.0%
! ATTTGTCTTGACAAAGGTGT+TGG + chr1_2:69549265-69549284 None:intergenic 35.0%
CACCTTTGTCAAGACAAATT+TGG - chr1_2:69549266-69549285 Msa0088460:intron 35.0%
CTCCAAATTTGTCTTGACAA+AGG + chr1_2:69549271-69549290 None:intergenic 35.0%
! ACAGTCCAATAACTTTTCCT+AGG + chr1_2:69549321-69549340 None:intergenic 35.0%
TTTACCACTAGTAACTCAGA+AGG + chr1_2:69549399-69549418 None:intergenic 35.0%
GTGATGATACTTTAGCAGTT+TGG - chr1_2:69549610-69549629 Msa0088460:CDS 35.0%
TGAATTGAATGTGTAGGGAT+AGG - chr1_2:69549755-69549774 Msa0088460:CDS 35.0%
GAATTGAATGTGTAGGGATA+GGG - chr1_2:69549756-69549775 Msa0088460:CDS 35.0%
ATTTCATCATGTTCCTTCTC+AGG - chr1_2:69549819-69549838 Msa0088460:CDS 35.0%
TTCCTCTCAAAGAAATTGGT+TGG + chr1_2:69549892-69549911 None:intergenic 35.0%
AGGATTCCTCTCAAAGAAAT+TGG + chr1_2:69549896-69549915 None:intergenic 35.0%
! CTAATGTTGAAAAGTGCAGT+TGG + chr1_2:69549956-69549975 None:intergenic 35.0%
CAGTAAAATTCCTATGTGAC+TGG - chr1_2:69550084-69550103 Msa0088460:five_prime_UTR 35.0%
! TAAGAGCATGATGAGGAGAA+AGG + chr1_2:69545677-69545696 None:intergenic 40.0%
TGAGATTGTGGTGTTTGGTT+TGG + chr1_2:69545795-69545814 None:intergenic 40.0%
GATTGAATGAGAGGTTTGTC+GGG + chr1_2:69545844-69545863 None:intergenic 40.0%
GATAGCCATGATTGAATGAG+AGG + chr1_2:69545853-69545872 None:intergenic 40.0%
!!! AGTTTTGGTTTTGGTGTTGG+AGG + chr1_2:69545875-69545894 None:intergenic 40.0%
GTCAAGCCTTTGTCATAGTA+AGG - chr1_2:69545911-69545930 Msa0088460:three_prime_UTR 40.0%
GTTCACCAAAGGTAAGGATA+GGG + chr1_2:69546020-69546039 None:intergenic 40.0%
TGTTCACCAAAGGTAAGGAT+AGG + chr1_2:69546021-69546040 None:intergenic 40.0%
!! TGGTTTGTTCACCAAAGGTA+AGG + chr1_2:69546026-69546045 None:intergenic 40.0%
!!! TTATGTGCTGCTTTTACGGT+AGG - chr1_2:69546123-69546142 Msa0088460:CDS 40.0%
TTTGTATGCAAGACCATTGG+AGG - chr1_2:69546215-69546234 Msa0088460:CDS 40.0%
TTGTATGCAAGACCATTGGA+GGG - chr1_2:69546216-69546235 Msa0088460:CDS 40.0%
! TACTCAGTTCCTTCAGCTTT+TGG + chr1_2:69546312-69546331 None:intergenic 40.0%
!! CCTTTAAGCTTTGGACCAAA+CGG + chr1_2:69546357-69546376 None:intergenic 40.0%
! GAGCCGCAAGAAAATTTTGA+AGG - chr1_2:69546616-69546635 Msa0088460:intron 40.0%
TTGTCCTCGTAAGCTTAACT+CGG + chr1_2:69546775-69546794 None:intergenic 40.0%
TGTTATTCGTCCCTGCAAAT+AGG - chr1_2:69546969-69546988 Msa0088460:intron 40.0%
GTTATTCGTCCCTGCAAATA+GGG - chr1_2:69546970-69546989 Msa0088460:intron 40.0%
TTATTCGTCCCTGCAAATAG+GGG - chr1_2:69546971-69546990 Msa0088460:intron 40.0%
TGATGTGGCAGTGATTAACT+GGG + chr1_2:69547081-69547100 None:intergenic 40.0%
!!! GTCAATTCCCATGCCATTTT+TGG + chr1_2:69547112-69547131 None:intergenic 40.0%
GCAATTTACCAAAAACGGCA+TGG + chr1_2:69547370-69547389 None:intergenic 40.0%
TCCTTTGACCCAGTTAATCA+CGG + chr1_2:69547070-69547089 None:intergenic 40.0%
TTTGATCAGTTGGGCCAATT+GGG - chr1_2:69548139-69548158 Msa0088460:intron 40.0%
! GCCAATTGGGTTTTCCATTT+AGG - chr1_2:69548152-69548171 Msa0088460:intron 40.0%
GATTGTGGTGAATATGGCTT+TGG - chr1_2:69548329-69548348 Msa0088460:intron 40.0%
AAGCAGAATAGTATGCGTCT+AGG + chr1_2:69548409-69548428 None:intergenic 40.0%
GCATACTATTCTGCTTCAGA+TGG - chr1_2:69548413-69548432 Msa0088460:intron 40.0%
AGTATGCTGGTGATATCATG+TGG - chr1_2:69548477-69548496 Msa0088460:intron 40.0%
CAAGTGGTAGCATCAAACTT+GGG - chr1_2:69548712-69548731 Msa0088460:intron 40.0%
AAGTGGTAGCATCAAACTTG+GGG - chr1_2:69548713-69548732 Msa0088460:intron 40.0%
GTTGGGCTTACTGGTATATT+AGG - chr1_2:69549102-69549121 Msa0088460:intron 40.0%
GGTATATTAGGGATTAAGGC+AGG - chr1_2:69549114-69549133 Msa0088460:intron 40.0%
TTGCTAGCTGATAACACCAT+TGG - chr1_2:69549183-69549202 Msa0088460:intron 40.0%
TAAGCCTTCTGAGTTACTAG+TGG - chr1_2:69549392-69549411 Msa0088460:CDS 40.0%
GCAAAAGTGGATGCACAATT+GGG + chr1_2:69549476-69549495 None:intergenic 40.0%
AGCAAAAGTGGATGCACAAT+TGG + chr1_2:69549477-69549496 None:intergenic 40.0%
GTGAATGCACCTCTAATTTG+TGG + chr1_2:69549513-69549532 None:intergenic 40.0%
AACAAAACTGAGAAATGGGC+AGG - chr1_2:69549561-69549580 Msa0088460:CDS 40.0%
! CTTTAGCAGTTTGGAGTCTA+AGG - chr1_2:69549619-69549638 Msa0088460:CDS 40.0%
ACTGGATAATCTTCCTGAGA+AGG + chr1_2:69549835-69549854 None:intergenic 40.0%
GACCAACCAATTTCTTTGAG+AGG - chr1_2:69549887-69549906 Msa0088460:CDS 40.0%
AATCACCAAAGCCTATGCAT+TGG - chr1_2:69549929-69549948 Msa0088460:CDS 40.0%
ACAACAAAGACCAGTCACAT+AGG + chr1_2:69550097-69550116 None:intergenic 40.0%
! AAGGTGTTAGAGGGTCAAGT+GGG + chr1_2:69545732-69545751 None:intergenic 45.0%
! CGGACAAGGTTGATTTCTGA+AGG + chr1_2:69545751-69545770 None:intergenic 45.0%
!!! AGGTGGTGGAAGAAGAGTTT+TGG + chr1_2:69545890-69545909 None:intergenic 45.0%
ACTATGACAAAGGCTTGACG+AGG + chr1_2:69545910-69545929 None:intergenic 45.0%
!! TGCAGTGGTTTGTTCACCAA+AGG + chr1_2:69546031-69546050 None:intergenic 45.0%
GAATGGTAACTGTGATGCAG+TGG + chr1_2:69546046-69546065 None:intergenic 45.0%
!!! GCTTTTACGGTAGGTTGGTT+TGG - chr1_2:69546132-69546151 Msa0088460:CDS 45.0%
ATTCCAGTGCCAAAAGCTGA+AGG - chr1_2:69546300-69546319 Msa0088460:CDS 45.0%
! TCTAAGATGAAGCCACCGTT+TGG - chr1_2:69546339-69546358 Msa0088460:CDS 45.0%
!! TTAAGCTTTGGACCAAACGG+TGG + chr1_2:69546354-69546373 None:intergenic 45.0%
CCGTTTGGTCCAAAGCTTAA+AGG - chr1_2:69546354-69546373 Msa0088460:CDS 45.0%
!! GTAAGTCAACATGATGGACC+TGG - chr1_2:69546384-69546403 Msa0088460:CDS 45.0%
TTAAGCGACCCCTATTTGCA+GGG + chr1_2:69547487-69547506 None:intergenic 45.0%
TTTAAGCGACCCCTATTTGC+AGG + chr1_2:69547486-69547505 None:intergenic 45.0%
GCAGTGATTAACTGGGTCAA+AGG + chr1_2:69547074-69547093 None:intergenic 45.0%
CTGATGTGGCAGTGATTAAC+TGG + chr1_2:69547082-69547101 None:intergenic 45.0%
GGAATTGACGAAAATACCCC+TGG + chr1_2:69547123-69547142 None:intergenic 45.0%
!!! GTCAATTCCCATGCCGTTTT+TGG - chr1_2:69547359-69547378 Msa0088460:CDS 45.0%
TTTAAGCGACCCCTATTTGC+AGG - chr1_2:69547486-69547505 Msa0088460:CDS 45.0%
TTAAGCGACCCCTATTTGCA+GGG - chr1_2:69547487-69547506 Msa0088460:CDS 45.0%
TGATTCGTCCCTGCAAATAG+GGG + chr1_2:69547498-69547517 None:intergenic 45.0%
GTGATTCGTCCCTGCAAATA+GGG + chr1_2:69547499-69547518 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + chr1_2:69547500-69547519 None:intergenic 45.0%
CTTTGATCAGTTGGGCCAAT+TGG - chr1_2:69548138-69548157 Msa0088460:intron 45.0%
TCTTCACTTGGGTCTTGGTA+TGG + chr1_2:69548287-69548306 None:intergenic 45.0%
ACCAAGACCCAAGTGAAGAA+TGG - chr1_2:69548288-69548307 Msa0088460:intron 45.0%
ACCATTCTTCACTTGGGTCT+TGG + chr1_2:69548292-69548311 None:intergenic 45.0%
TTGGCAGGACAATCTGTGAA+AGG + chr1_2:69548377-69548396 None:intergenic 45.0%
TTGTGTGTGGCAGATAACTG+AGG - chr1_2:69548608-69548627 Msa0088460:intron 45.0%
! AGTGAGATCGGTTTCAACTG+TGG - chr1_2:69548653-69548672 Msa0088460:intron 45.0%
! GTGAGATCGGTTTCAACTGT+GGG - chr1_2:69548654-69548673 Msa0088460:intron 45.0%
GATTGGGAGTTTAAGCCAAG+TGG - chr1_2:69548696-69548715 Msa0088460:intron 45.0%
CCAAGTTTGATGCTACCACT+TGG + chr1_2:69548714-69548733 None:intergenic 45.0%
CCAAGTGGTAGCATCAAACT+TGG - chr1_2:69548711-69548730 Msa0088460:intron 45.0%
GTAGCATCAAACTTGGGGTA+TGG - chr1_2:69548718-69548737 Msa0088460:intron 45.0%
ACTCCACGTCAGTATCTTCA+TGG - chr1_2:69548995-69549014 Msa0088460:intron 45.0%
TGTCCATGAAGATACTGACG+TGG + chr1_2:69549001-69549020 None:intergenic 45.0%
ATGGTCATGGTAGACACCAA+TGG + chr1_2:69549202-69549221 None:intergenic 45.0%
TGGCTTCACCATCAATGTCA+AGG + chr1_2:69549245-69549264 None:intergenic 45.0%
GCTGATGCAAGAGTCAACAT+TGG - chr1_2:69549366-69549385 Msa0088460:CDS 45.0%
AAAACTGAGAAATGGGCAGG+AGG - chr1_2:69549564-69549583 Msa0088460:CDS 45.0%
GGATAGGGAGATTGAGAACA+AGG - chr1_2:69549771-69549790 Msa0088460:CDS 45.0%
TCAAATCCACCACTCAACGT+AGG + chr1_2:69549862-69549881 None:intergenic 45.0%
!! TTAAAAATCATAAAAAATTT+CGG + chr1_2:69547250-69547269 None:intergenic 5.0%
!!! AAATTTTGAAATTTTTTTTA+AGG - chr1_2:69547310-69547329 Msa0088460:CDS 5.0%
!! GAAGGTGTTAGAGGGTCAAG+TGG + chr1_2:69545733-69545752 None:intergenic 50.0%
TGAGGATTATGGTGCGGACA+AGG + chr1_2:69545765-69545784 None:intergenic 50.0%
ATGACAAAGGCTTGACGAGG+TGG + chr1_2:69545907-69545926 None:intergenic 50.0%
GGCTACCCTATCCTTACCTT+TGG - chr1_2:69546012-69546031 Msa0088460:three_prime_UTR 50.0%
!!! GTGCTGCTTTTACGGTAGGT+TGG - chr1_2:69546127-69546146 Msa0088460:CDS 50.0%
!! TACGGTAGGTTGGTTTGGAG+AGG - chr1_2:69546137-69546156 Msa0088460:CDS 50.0%
! GTTCCTTCAGCTTTTGGCAC+TGG + chr1_2:69546306-69546325 None:intergenic 50.0%
TGACCTTGGATGGTGAAACC+AGG + chr1_2:69546405-69546424 None:intergenic 50.0%
ATTACCTGACGGAGTGACCT+TGG + chr1_2:69546419-69546438 None:intergenic 50.0%
TCAGCCGAGTTAAGCTTACG+AGG - chr1_2:69546768-69546787 Msa0088460:intron 50.0%
TGACGTGGCCGTGATTAACT+GGG - chr1_2:69547390-69547409 Msa0088460:CDS 50.0%
GCCGTGATTAACTGGGTCAA+AGG - chr1_2:69547397-69547416 Msa0088460:CDS 50.0%
!! TCTAGGAAGACAGCATTGGC+AGG + chr1_2:69548392-69548411 None:intergenic 50.0%
TGCGTCTAGGAAGACAGCAT+TGG + chr1_2:69548396-69548415 None:intergenic 50.0%
TGTGGCAGATAACTGAGGTC+AGG - chr1_2:69548613-69548632 Msa0088460:intron 50.0%
! ATTGGGTACCGTTTGCTTCC+AGG - chr1_2:69549450-69549469 Msa0088460:CDS 50.0%
CAATTGGGCCTGGAAGCAAA+CGG + chr1_2:69549461-69549480 None:intergenic 50.0%
TTGGGCCAATGCATAGGCTT+TGG + chr1_2:69549937-69549956 None:intergenic 50.0%
GTTAGAGGGTCAAGTGGGTG+AGG + chr1_2:69545727-69545746 None:intergenic 55.0%
ACAAAGGCTTGACGAGGTGG+TGG + chr1_2:69545904-69545923 None:intergenic 55.0%
TGCAAGACCATTGGAGGGTG+TGG - chr1_2:69546221-69546240 Msa0088460:CDS 55.0%
GGACCTGGTTTCACCATCCA+AGG - chr1_2:69546399-69546418 Msa0088460:CDS 55.0%
CTGACGTGGCCGTGATTAAC+TGG - chr1_2:69547389-69547408 Msa0088460:CDS 55.0%
AGTGGATGCACAATTGGGCC+TGG + chr1_2:69549471-69549490 None:intergenic 55.0%
CCACTCAACGTAGGCATGAC+TGG + chr1_2:69549853-69549872 None:intergenic 55.0%
CCAGTCATGCCTACGTTGAG+TGG - chr1_2:69549850-69549869 Msa0088460:CDS 55.0%
GTCATGCCTACGTTGAGTGG+TGG - chr1_2:69549853-69549872 Msa0088460:CDS 55.0%
GTGCAGTTGGGCCAATGCAT+AGG + chr1_2:69549943-69549962 None:intergenic 55.0%
ACAGCTGCCACACCCTCCAA+TGG + chr1_2:69546231-69546250 None:intergenic 60.0%
! ATTGGAGGGTGTGGCAGCTG+TGG - chr1_2:69546230-69546249 Msa0088460:CDS 60.0%
CCTGACGGAGTGACCTTGGA+TGG + chr1_2:69546415-69546434 None:intergenic 60.0%
CCATCCAAGGTCACTCCGTC+AGG - chr1_2:69546412-69546431 Msa0088460:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 69545575 69550146 69545575 ID=Msa0088460;Name=Msa0088460
chr1_2 mRNA 69545575 69550146 69545575 ID=Msa0088460-mRNA-1;Parent=Msa0088460;Name=Msa0088460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=77|1|1|1|1|1|4|502|607
chr1_2 exon 69545575 69546619 69545575 ID=Msa0088460-mRNA-1:exon:23896;Parent=Msa0088460-mRNA-1
chr1_2 exon 69546987 69547100 69546987 ID=Msa0088460-mRNA-1:exon:23895;Parent=Msa0088460-mRNA-1
chr1_2 exon 69547189 69547573 69547189 ID=Msa0088460-mRNA-1:exon:23894;Parent=Msa0088460-mRNA-1
chr1_2 exon 69549288 69550146 69549288 ID=Msa0088460-mRNA-1:exon:23893;Parent=Msa0088460-mRNA-1
chr1_2 five_prime_UTR 69550070 69550146 69550070 ID=Msa0088460-mRNA-1:five_prime_utr;Parent=Msa0088460-mRNA-1
chr1_2 CDS 69549288 69550069 69549288 ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1
chr1_2 CDS 69547189 69547573 69547189 ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1
chr1_2 CDS 69546987 69547100 69546987 ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1
chr1_2 CDS 69546077 69546619 69546077 ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1
chr1_2 three_prime_UTR 69545575 69546076 69545575 ID=Msa0088460-mRNA-1:three_prime_utr;Parent=Msa0088460-mRNA-1
Gene Sequence

>Msa0088460

ATGAAGATGAAGTTGATATTCTCCTTTCTCCTCATCATGCTCTTATGTAACTCCATAGAATGCAGTCATATTCCTCACCCACTTGACCCTCTAACACCTTCAGAAATCAACCTTGTCCGCACCATAATCCTCAAATCATACCAAACCAAACACCACAATCTCACTTTTCATTACGTTGGATTGCAAGAACCCGACAAACCTCTCATTCAATCATGGCTATCCTCCAACACCAAAACCAAAACTCTTCTTCCACCACCTCGTCAAGCCTTTGTCATAGTAAGGTTCCAAAAACAATCCCTCGAAATCATCGTAGACTTTTCAACTCGTTCCATAATCTCAACAAAACTCTACAAAGGACAAGGCTACCCTATCCTTACCTTTGGTGAACAAACCACTGCATCACAGTTACCATTCACCTATGAACCGTTTAAACATTCGTTGAAGAAAAGAAATATTAACATATGTAATGTTTTATGTGCTGCTTTTACGGTAGGTTGGTTTGGAGAGGAAAAGAGTAAAAGAACAGTGAAAGTGAAGTGTTATTACAAGAATGGTTCTGCTAATTTGTATGCAAGACCATTGGAGGGTGTGGCAGCTGTGGTTGATCTTGATGAAATGAGAATTGTTGGTTATTCTGATAGACATGTGATTCCAGTGCCAAAAGCTGAAGGAACTGAGTATCGAGCTTCTAAGATGAAGCCACCGTTTGGTCCAAAGCTTAAAGGCATATCTGTAAGTCAACATGATGGACCTGGTTTCACCATCCAAGGTCACTCCGTCAGTTGGGCCAATTGGGTTTTCCATTTAGGATTCGACATTCAAGTTGGTCCAATAATTTCTTTAGCATCAATTTATGATCTAGAAAATCAGAAATACCGTGAAGTACTATACAAAGGATTCATATCAGAAGTGTTTGTACCATACCAAGACCCAAGTGAAGAATGGTATTACACAACCTACTTTGATTGTGGTGAATATGGCTTTGGACAGACTATGTCTTCATTACAACCTTTCACAGATTGTCCTGCCAATGCTGTCTTCCTAGACGCATACTATTCTGCTTCAGATGGTACTCCTGTTAAGATATCTAATGCTTTTTGCATTTTTGAGAAGTATGCTGGTGATATCATGTGGCGTCACACAGAAATTGCAATCCCAAATGAAGTGATAACTGAGGTCAGGTCAGATGTAAGCTTAATAGTGAGATCGGTTTCAACTGTGGGAAACTATGACTACGTTATAGATTGGGAGTTTAAGCCAAGTGGTAGCATCAAACTTGGGGTTGGGCTTACTGGTATATTAGGGATTAAGGCAGGGACATATACCAATACAGATCAAATCAAAGAAGACATACATGGCACATTGCTAGCTGATAACACCATTGGTGTCTACCATGACCATTTCTTTACCTATTATCTTGACCTTGACATTGATGGTGAAGCCAACACCTTTGTCAAGACAAATTTGGAGACTGTAAGAGTGAAAGATCAAACAATACCTAGGAAAAGTTATTGGACTGTTGTAAAGGAAACAGCTAAAACAGAAGCTGATGCAAGAGTCAACATTGGTTTTAAGCCTTCTGAGTTACTAGTGGTAAATCCTAATAAAAAAACAAAACAAGGAAATCAAATTGGGTACCGTTTGCTTCCAGGCCCAATTGTGCATCCACTTTTGCTAACTGATGATTATCCACAAATTAGAGGTGCATTCACTAATTATAATGTGTGGGTCACACCATACAACAAAACTGAGAAATGGGCAGGAGGATTATATGTTGATCATAGCAGAGGTGATGATACTTTAGCAGTTTGGAGTCTAAGGTGA

Protein sequence

>Msa0088460

MKMKLIFSFLLIMLLCNSIECSHIPHPLDPLTPSEINLVRTIILKSYQTKHHNLTFHYVGLQEPDKPLIQSWLSSNTKTKTLLPPPRQAFVIVRFQKQSLEIIVDFSTRSIISTKLYKGQGYPILTFGEQTTASQLPFTYEPFKHSLKKRNINICNVLCAAFTVGWFGEEKSKRTVKVKCYYKNGSANLYARPLEGVAAVVDLDEMRIVGYSDRHVIPVPKAEGTEYRASKMKPPFGPKLKGISVSQHDGPGFTIQGHSVSWANWVFHLGFDIQVGPIISLASIYDLENQKYREVLYKGFISEVFVPYQDPSEEWYYTTYFDCGEYGFGQTMSSLQPFTDCPANAVFLDAYYSASDGTPVKISNAFCIFEKYAGDIMWRHTEIAIPNEVITEVRSDVSLIVRSVSTVGNYDYVIDWEFKPSGSIKLGVGLTGILGIKAGTYTNTDQIKEDIHGTLLADNTIGVYHDHFFTYYLDLDIDGEANTFVKTNLETVRVKDQTIPRKSYWTVVKETAKTEADARVNIGFKPSELLVVNPNKKTKQGNQIGYRLLPGPIVHPLLLTDDYPQIRGAFTNYNVWVTPYNKTEKWAGGLYVDHSRGDDTLAVWSLR*