Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088460 | XP_039685899.1 | 96.870 | 607 | 18 | 1 | 1 | 607 | 3 | 608 | 0.0 | 1223 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088460 | sp|Q43077|AMO_PEA | 55.354 | 607 | 263 | 4 | 1 | 605 | 7 | 607 | 0.0 | 720 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088460 | G7ID65 | 96.870 | 607 | 18 | 1 | 1 | 607 | 3 | 608 | 0.0 | 1222 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0088460 | Msa0134780 | 0.838702 | 2.458031e-57 | -8.615850e-47 |
Msa0088460 | Msa0134880 | 0.878071 | 3.776771e-69 | -8.615850e-47 |
Msa0088460 | Msa0179700 | 0.910239 | 2.339890e-82 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088460 | MtrunA17_Chr1g0205571 | 96.870 | 607 | 18 | 1 | 1 | 607 | 3 | 608 | 0.0 | 1222 |
Msa0088460 | MtrunA17_Chr4g0065981 | 54.950 | 606 | 266 | 3 | 3 | 605 | 7 | 608 | 0.0 | 712 |
Msa0088460 | MtrunA17_Chr4g0065961 | 54.770 | 608 | 263 | 4 | 3 | 605 | 1 | 601 | 0.0 | 692 |
Msa0088460 | MtrunA17_Chr1g0205541 | 50.249 | 603 | 288 | 3 | 5 | 607 | 18 | 608 | 0.0 | 653 |
Msa0088460 | MtrunA17_Chr4g0065991 | 61.261 | 444 | 171 | 1 | 164 | 607 | 1 | 443 | 0.0 | 590 |
Msa0088460 | MtrunA17_Chr3g0119641 | 45.347 | 591 | 308 | 9 | 26 | 607 | 78 | 662 | 8.31e-178 | 521 |
Msa0088460 | MtrunA17_Chr4g0023331 | 64.928 | 345 | 120 | 1 | 261 | 605 | 5 | 348 | 7.55e-167 | 482 |
Msa0088460 | MtrunA17_Chr4g0023321 | 44.615 | 260 | 138 | 3 | 3 | 260 | 7 | 262 | 2.24e-71 | 231 |
Msa0088460 | MtrunA17_Chr3g0117081 | 28.503 | 628 | 383 | 23 | 26 | 604 | 73 | 683 | 1.69e-62 | 220 |
Msa0088460 | MtrunA17_Chr5g0412801 | 28.185 | 628 | 386 | 20 | 26 | 604 | 44 | 655 | 1.07e-57 | 206 |
Msa0088460 | MtrunA17_Chr8g0368011 | 28.571 | 497 | 303 | 16 | 26 | 481 | 82 | 567 | 3.90e-49 | 181 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0088460 | AT1G31690.1 | 59.898 | 586 | 230 | 4 | 25 | 607 | 26 | 609 | 0.0 | 750 |
Msa0088460 | AT1G31710.1 | 57.143 | 588 | 244 | 5 | 26 | 607 | 28 | 613 | 0.0 | 720 |
Msa0088460 | AT1G31670.1 | 57.070 | 587 | 229 | 7 | 25 | 607 | 106 | 673 | 0.0 | 706 |
Msa0088460 | AT4G14940.1 | 50.000 | 602 | 287 | 5 | 10 | 607 | 8 | 599 | 0.0 | 622 |
Msa0088460 | AT4G12290.2 | 44.908 | 599 | 304 | 10 | 26 | 607 | 82 | 671 | 4.25e-180 | 525 |
Msa0088460 | AT4G12290.1 | 44.908 | 599 | 304 | 10 | 26 | 607 | 82 | 671 | 5.17e-179 | 525 |
Msa0088460 | AT1G62810.1 | 44.574 | 599 | 316 | 9 | 17 | 607 | 53 | 643 | 6.62e-178 | 521 |
Msa0088460 | AT3G43670.1 | 41.391 | 604 | 326 | 10 | 18 | 607 | 35 | 624 | 2.90e-164 | 485 |
Msa0088460 | AT4G12270.1 | 41.192 | 386 | 187 | 10 | 26 | 385 | 84 | 455 | 2.60e-92 | 292 |
Msa0088460 | AT4G12280.1 | 50.000 | 226 | 105 | 2 | 390 | 607 | 5 | 230 | 3.51e-71 | 232 |
Msa0088460 | AT2G42490.1 | 27.955 | 626 | 389 | 19 | 26 | 604 | 80 | 690 | 1.46e-61 | 218 |
Find 176 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGGGCTTACTGGTATATT+AGG | 0.165498 | 1_2:-69546597 | Msa0088460:CDS |
ATTGATGCTAAAGAAATTAT+TGG | 0.173562 | 1_2:+69547505 | None:intergenic |
CACCTTTGTCAAGACAAATT+TGG | 0.177990 | 1_2:-69546433 | Msa0088460:CDS |
TTAAAATAGGTTGGGCTTAC+TGG | 0.179307 | 1_2:-69546606 | Msa0088460:intron |
TTTACTGATCAGATCAAATA+TGG | 0.188193 | 1_2:+69545631 | None:intergenic |
CACTCTTGTTGTATGATCTT+TGG | 0.195594 | 1_2:+69550070 | None:intergenic |
ACAAAACAAGGAAATCAAAT+TGG | 0.202546 | 1_2:-69546267 | Msa0088460:CDS |
CCGTTTGGTCCAAAGCTTAA+AGG | 0.225115 | 1_2:-69549345 | Msa0088460:CDS |
CTTTGATCAGTTGGGCCAAT+TGG | 0.227450 | 1_2:-69547561 | Msa0088460:intron |
TACTTTGATTGTGGTGAATA+TGG | 0.233955 | 1_2:-69547376 | Msa0088460:CDS |
TACTCAGTTCCTTCAGCTTT+TGG | 0.241847 | 1_2:+69549390 | None:intergenic |
CTTTAGCAGTTTGGAGTCTA+AGG | 0.250428 | 1_2:-69546080 | Msa0088460:CDS |
AGGATTCCTCTCAAAGAAAT+TGG | 0.255874 | 1_2:+69545806 | None:intergenic |
TACTGGTATATTAGGGATTA+AGG | 0.267723 | 1_2:-69546589 | Msa0088460:CDS |
AAAGAAATCACCACTTCATT+TGG | 0.267968 | 1_2:+69547178 | None:intergenic |
CTTGAATGTCGAATCCTAAA+TGG | 0.275025 | 1_2:+69547533 | None:intergenic |
TGAGCAAAGCCAAAATTTAA+TGG | 0.282624 | 1_2:+69546052 | None:intergenic |
ATTGGGTACCGTTTGCTTCC+AGG | 0.303677 | 1_2:-69546249 | Msa0088460:CDS |
TTCTTTGATTTGATCTGTAT+TGG | 0.307370 | 1_2:+69546554 | None:intergenic |
AGAACAAGGATATTGTATTA+TGG | 0.321872 | 1_2:-69545914 | Msa0088460:three_prime_UTR |
AGCAAAAGTGGATGCACAAT+TGG | 0.336397 | 1_2:+69546225 | None:intergenic |
TATCTTGACCTTGACATTGA+TGG | 0.340459 | 1_2:-69546465 | Msa0088460:CDS |
AAGGTGAGTCCATTAAATTT+TGG | 0.347198 | 1_2:-69546061 | Msa0088460:exon |
TACATAGTTGACTACTTAAC+TGG | 0.350394 | 1_2:-69550098 | Msa0088460:five_prime_UTR |
CGAATGTTTAAACGGTTCAT+AGG | 0.351625 | 1_2:+69549632 | None:intergenic |
GTGAGAAATTGTTAATGTTT+TGG | 0.355532 | 1_2:-69545977 | Msa0088460:three_prime_UTR |
TTGGGCTTACTGGTATATTA+GGG | 0.355547 | 1_2:-69546596 | Msa0088460:CDS |
TTGGTATGATTTGAGGATTA+TGG | 0.360195 | 1_2:+69549926 | None:intergenic |
GTGATGATACTTTAGCAGTT+TGG | 0.361600 | 1_2:-69546089 | Msa0088460:CDS |
AGGAATATGACTGCATTCTA+TGG | 0.363674 | 1_2:+69549995 | None:intergenic |
CAATACCTAGGAAAAGTTAT+TGG | 0.365047 | 1_2:-69546386 | Msa0088460:CDS |
ACAGATATGCCTTTAAGCTT+TGG | 0.374151 | 1_2:+69549336 | None:intergenic |
AAAGCATTAGATATCTTAAC+AGG | 0.379099 | 1_2:+69547259 | None:intergenic |
AGGTGGTGGAAGAAGAGTTT+TGG | 0.380559 | 1_2:+69549812 | None:intergenic |
AATGTCAAGGTCAAGATAAT+AGG | 0.382154 | 1_2:+69546470 | None:intergenic |
ACCATTCTTCACTTGGGTCT+TGG | 0.384600 | 1_2:+69547410 | None:intergenic |
TTTGATCAGTTGGGCCAATT+GGG | 0.389327 | 1_2:-69547560 | Msa0088460:intron |
AAGAAATCACCACTTCATTT+GGG | 0.391853 | 1_2:+69547179 | None:intergenic |
GATGATTATCCACAAATTAG+AGG | 0.394794 | 1_2:-69546198 | Msa0088460:CDS |
CATACAACAAAACTGAGAAA+TGG | 0.397433 | 1_2:-69546143 | Msa0088460:CDS |
GTGAATGCACCTCTAATTTG+TGG | 0.399902 | 1_2:+69546189 | None:intergenic |
CTTGATGAAATGAGAATTGT+TGG | 0.407335 | 1_2:-69549441 | Msa0088460:CDS |
ATTTCATCATGTTCCTTCTC+AGG | 0.409173 | 1_2:-69545880 | Msa0088460:three_prime_UTR |
TTGATTTCTGAAGGTGTTAG+AGG | 0.415988 | 1_2:+69549960 | None:intergenic |
TTCTTCAACGAATGTTTAAA+CGG | 0.416479 | 1_2:+69549624 | None:intergenic |
CCACTCAACGTAGGCATGAC+TGG | 0.418913 | 1_2:+69545849 | None:intergenic |
TCTTCACTTGGGTCTTGGTA+TGG | 0.419526 | 1_2:+69547415 | None:intergenic |
GTCAAGCCTTTGTCATAGTA+AGG | 0.426454 | 1_2:-69549788 | Msa0088460:CDS |
AAAAGTGAGATTGTGGTGTT+TGG | 0.426480 | 1_2:+69549902 | None:intergenic |
TTGGGCCAATGCATAGGCTT+TGG | 0.427838 | 1_2:+69545765 | None:intergenic |
CCATCCAAGGTCACTCCGTC+AGG | 0.427909 | 1_2:-69549287 | Msa0088460:intron |
GTGTAATACCATTCTTCACT+TGG | 0.433020 | 1_2:+69547403 | None:intergenic |
GATTGTGGTGAATATGGCTT+TGG | 0.433096 | 1_2:-69547370 | Msa0088460:CDS |
ACTATGACTACGTTATAGAT+TGG | 0.433768 | 1_2:-69547020 | Msa0088460:CDS |
TGAATTGAATGTGTAGGGAT+AGG | 0.437195 | 1_2:-69545944 | Msa0088460:three_prime_UTR |
GTTTGGTTTGGTATGATTTG+AGG | 0.437353 | 1_2:+69549919 | None:intergenic |
ATACAACAAAACTGAGAAAT+GGG | 0.441699 | 1_2:-69546142 | Msa0088460:CDS |
GTGAAGTGTTATTACAAGAA+TGG | 0.446073 | 1_2:-69549516 | Msa0088460:CDS |
CCAAGTGGTAGCATCAAACT+TGG | 0.451289 | 1_2:-69546988 | Msa0088460:CDS |
ATCCTTTGTATAGTACTTCA+CGG | 0.458399 | 1_2:+69547458 | None:intergenic |
GGCTACCCTATCCTTACCTT+TGG | 0.459203 | 1_2:-69549687 | Msa0088460:CDS |
TGAGATTGTGGTGTTTGGTT+TGG | 0.467176 | 1_2:+69549907 | None:intergenic |
GATTGAATGAGAGGTTTGTC+GGG | 0.468617 | 1_2:+69549858 | None:intergenic |
TTACTGATCAGATCAAATAT+GGG | 0.471418 | 1_2:+69545632 | None:intergenic |
GTTAGAGGGTCAAGTGGGTG+AGG | 0.473682 | 1_2:+69549975 | None:intergenic |
CAAGATAATAGGTAAAGAAA+TGG | 0.475626 | 1_2:+69546481 | None:intergenic |
GGATAGGGAGATTGAGAACA+AGG | 0.479632 | 1_2:-69545928 | Msa0088460:three_prime_UTR |
TAATCATCAGTTAGCAAAAG+TGG | 0.479949 | 1_2:+69546213 | None:intergenic |
TGATTGAATGAGAGGTTTGT+CGG | 0.481894 | 1_2:+69549857 | None:intergenic |
TGTTCACCAAAGGTAAGGAT+AGG | 0.481924 | 1_2:+69549681 | None:intergenic |
CAAAACAAGGAAATCAAATT+GGG | 0.482146 | 1_2:-69546266 | Msa0088460:CDS |
TCCTAAATGGAAAACCCAAT+TGG | 0.486397 | 1_2:+69547546 | None:intergenic |
AAGTTATTGGACTGTTGTAA+AGG | 0.495057 | 1_2:-69546373 | Msa0088460:CDS |
ATTGTATTATGGCACACAAT+GGG | 0.500762 | 1_2:-69545903 | Msa0088460:three_prime_UTR |
GCAAAAGTGGATGCACAATT+GGG | 0.501386 | 1_2:+69546226 | None:intergenic |
TCTAAGATGAAGCCACCGTT+TGG | 0.502594 | 1_2:-69549360 | Msa0088460:CDS |
TTCCTCTCAAAGAAATTGGT+TGG | 0.505842 | 1_2:+69545810 | None:intergenic |
AGTGGATGCACAATTGGGCC+TGG | 0.506196 | 1_2:+69546231 | None:intergenic |
CCTTTAAGCTTTGGACCAAA+CGG | 0.506349 | 1_2:+69549345 | None:intergenic |
TACACAACCTACTTTGATTG+TGG | 0.507919 | 1_2:-69547385 | Msa0088460:CDS |
CTATGACTACGTTATAGATT+GGG | 0.508181 | 1_2:-69547019 | Msa0088460:CDS |
ATTTGTCTTGACAAAGGTGT+TGG | 0.508980 | 1_2:+69546437 | None:intergenic |
TTTGTATGCAAGACCATTGG+AGG | 0.509999 | 1_2:-69549484 | Msa0088460:CDS |
GAATTGAATGTGTAGGGATA+GGG | 0.511193 | 1_2:-69545943 | Msa0088460:three_prime_UTR |
TGTAATACCATTCTTCACTT+GGG | 0.512744 | 1_2:+69547404 | None:intergenic |
GGTATATTAGGGATTAAGGC+AGG | 0.513268 | 1_2:-69546585 | Msa0088460:CDS |
GACCAACCAATTTCTTTGAG+AGG | 0.513325 | 1_2:-69545812 | Msa0088460:three_prime_UTR |
ACCAAGACCCAAGTGAAGAA+TGG | 0.525685 | 1_2:-69547411 | Msa0088460:CDS |
TGGTTTGTTCACCAAAGGTA+AGG | 0.529144 | 1_2:+69549676 | None:intergenic |
ACAAACCTCTCATTCAATCA+TGG | 0.531898 | 1_2:-69549854 | Msa0088460:CDS |
ACAAAGGCTTGACGAGGTGG+TGG | 0.532967 | 1_2:+69549798 | None:intergenic |
ATTACCTGACGGAGTGACCT+TGG | 0.533638 | 1_2:+69549283 | None:intergenic |
CAGTAAAATTCCTATGTGAC+TGG | 0.533735 | 1_2:-69545615 | Msa0088460:three_prime_UTR |
TTGGAACCTTACTATGACAA+AGG | 0.533882 | 1_2:+69549782 | None:intergenic |
TGTAAGCTTAATAGTGAGAT+CGG | 0.543713 | 1_2:-69547058 | Msa0088460:CDS |
CATTCACTAATTATAATGTG+TGG | 0.543852 | 1_2:-69546173 | Msa0088460:CDS |
CGGACAAGGTTGATTTCTGA+AGG | 0.546012 | 1_2:+69549951 | None:intergenic |
TACGGTAGGTTGGTTTGGAG+AGG | 0.547168 | 1_2:-69549562 | Msa0088460:CDS |
ATTGGAGGGTGTGGCAGCTG+TGG | 0.548777 | 1_2:-69549469 | Msa0088460:CDS |
GTGAGATCGGTTTCAACTGT+GGG | 0.550438 | 1_2:-69547045 | Msa0088460:CDS |
CCAAGTTTGATGCTACCACT+TGG | 0.551888 | 1_2:+69546988 | None:intergenic |
TCTAGGAAGACAGCATTGGC+AGG | 0.552138 | 1_2:+69547310 | None:intergenic |
TTAAACGGTTCATAGGTGAA+TGG | 0.552700 | 1_2:+69549639 | None:intergenic |
TAAGAGCATGATGAGGAGAA+AGG | 0.552830 | 1_2:+69550025 | None:intergenic |
CAAGTGGTAGCATCAAACTT+GGG | 0.552885 | 1_2:-69546987 | Msa0088460:CDS |
GATAGCCATGATTGAATGAG+AGG | 0.554086 | 1_2:+69549849 | None:intergenic |
TGCAAGACCATTGGAGGGTG+TGG | 0.554369 | 1_2:-69549478 | Msa0088460:CDS |
CCAGTCATGCCTACGTTGAG+TGG | 0.556192 | 1_2:-69545849 | Msa0088460:three_prime_UTR |
TAATGTTGAAAAGTGCAGTT+GGG | 0.556487 | 1_2:+69545747 | None:intergenic |
AAAAGTCTACGATGATTTCG+AGG | 0.556844 | 1_2:+69549751 | None:intergenic |
TGAGGATTATGGTGCGGACA+AGG | 0.557736 | 1_2:+69549937 | None:intergenic |
TGAATTGAATTGAATGTGTA+GGG | 0.559845 | 1_2:-69545949 | Msa0088460:three_prime_UTR |
CTCCAAATTTGTCTTGACAA+AGG | 0.561847 | 1_2:+69546431 | None:intergenic |
CTAATGTTGAAAAGTGCAGT+TGG | 0.562794 | 1_2:+69545746 | None:intergenic |
GTGCAGTTGGGCCAATGCAT+AGG | 0.562944 | 1_2:+69545759 | None:intergenic |
TAGTTGACTACTTAACTGGT+TGG | 0.565558 | 1_2:-69550094 | Msa0088460:five_prime_UTR |
GTTCACCAAAGGTAAGGATA+GGG | 0.566348 | 1_2:+69549682 | None:intergenic |
TGCAGTGGTTTGTTCACCAA+AGG | 0.567507 | 1_2:+69549671 | None:intergenic |
TAATTTGTATGCAAGACCAT+TGG | 0.568732 | 1_2:-69549487 | Msa0088460:CDS |
TTGCTAGCTGATAACACCAT+TGG | 0.576690 | 1_2:-69546516 | Msa0088460:CDS |
ATGAATTGAATTGAATGTGT+AGG | 0.579890 | 1_2:-69545950 | Msa0088460:three_prime_UTR |
TGATTTCTGAAGGTGTTAGA+GGG | 0.580744 | 1_2:+69549961 | None:intergenic |
AACAAAACTGAGAAATGGGC+AGG | 0.581483 | 1_2:-69546138 | Msa0088460:CDS |
ACTGGATAATCTTCCTGAGA+AGG | 0.584969 | 1_2:+69545867 | None:intergenic |
TAAGCCTTCTGAGTTACTAG+TGG | 0.586124 | 1_2:-69546307 | Msa0088460:CDS |
ACAGCTGCCACACCCTCCAA+TGG | 0.586261 | 1_2:+69549471 | None:intergenic |
CAAATCAAAGAAGACATACA+TGG | 0.588282 | 1_2:-69546543 | Msa0088460:CDS |
GTCATGCCTACGTTGAGTGG+TGG | 0.588484 | 1_2:-69545846 | Msa0088460:three_prime_UTR |
TGTGGCAGATAACTGAGGTC+AGG | 0.588686 | 1_2:-69547086 | Msa0088460:intron |
ATTCCAGTGCCAAAAGCTGA+AGG | 0.590477 | 1_2:-69549399 | Msa0088460:CDS |
GGACCTGGTTTCACCATCCA+AGG | 0.591002 | 1_2:-69549300 | Msa0088460:CDS |
ACAACAAAGACCAGTCACAT+AGG | 0.591135 | 1_2:+69545605 | None:intergenic |
TATTGTATTATGGCACACAA+TGG | 0.591427 | 1_2:-69545904 | Msa0088460:three_prime_UTR |
ATATTCACCACAATCAAAGT+AGG | 0.591448 | 1_2:+69547378 | None:intergenic |
AAGCAGAATAGTATGCGTCT+AGG | 0.592646 | 1_2:+69547293 | None:intergenic |
TTAGGATTCGACATTCAAGT+TGG | 0.594138 | 1_2:-69547529 | Msa0088460:CDS |
AATTGCAATCCCAAATGAAG+TGG | 0.594960 | 1_2:-69547188 | Msa0088460:intron |
AATCACCAAAGCCTATGCAT+TGG | 0.596584 | 1_2:-69545770 | Msa0088460:three_prime_UTR |
ATTCACTAATTATAATGTGT+GGG | 0.598904 | 1_2:-69546172 | Msa0088460:CDS |
AATAGGTAAAGAAATGGTCA+TGG | 0.601680 | 1_2:+69546487 | None:intergenic |
TGCGTCTAGGAAGACAGCAT+TGG | 0.603158 | 1_2:+69547306 | None:intergenic |
TGAAAGATCAAACAATACCT+AGG | 0.603738 | 1_2:-69546398 | Msa0088460:CDS |
CGTAATGAAAAGTGAGATTG+TGG | 0.609986 | 1_2:+69549895 | None:intergenic |
AAAGTCTACGATGATTTCGA+GGG | 0.611099 | 1_2:+69549752 | None:intergenic |
CAATTGGGCCTGGAAGCAAA+CGG | 0.613823 | 1_2:+69546241 | None:intergenic |
GATTGGGAGTTTAAGCCAAG+TGG | 0.613885 | 1_2:-69547003 | Msa0088460:CDS |
ATCTCAACAAAACTCTACAA+AGG | 0.617196 | 1_2:-69549714 | Msa0088460:CDS |
TGACCTTGGATGGTGAAACC+AGG | 0.621250 | 1_2:+69549297 | None:intergenic |
TTGGCAGGACAATCTGTGAA+AGG | 0.622053 | 1_2:+69547325 | None:intergenic |
GCATACTATTCTGCTTCAGA+TGG | 0.624085 | 1_2:-69547286 | Msa0088460:CDS |
CCTGACGGAGTGACCTTGGA+TGG | 0.627284 | 1_2:+69549287 | None:intergenic |
TGGCTTCACCATCAATGTCA+AGG | 0.628699 | 1_2:+69546457 | None:intergenic |
TTGTATGCAAGACCATTGGA+GGG | 0.628719 | 1_2:-69549483 | Msa0088460:CDS |
GAAGGTGTTAGAGGGTCAAG+TGG | 0.633794 | 1_2:+69549969 | None:intergenic |
GCTGATGCAAGAGTCAACAT+TGG | 0.634134 | 1_2:-69546333 | Msa0088460:CDS |
TTAAGCTTTGGACCAAACGG+TGG | 0.635575 | 1_2:+69549348 | None:intergenic |
ATGACAAAGGCTTGACGAGG+TGG | 0.637143 | 1_2:+69549795 | None:intergenic |
TTTACCACTAGTAACTCAGA+AGG | 0.641809 | 1_2:+69546303 | None:intergenic |
GTATATTAGGGATTAAGGCA+GGG | 0.645710 | 1_2:-69546584 | Msa0088460:CDS |
AAGTGGTAGCATCAAACTTG+GGG | 0.646028 | 1_2:-69546986 | Msa0088460:intron |
ATGGTCATGGTAGACACCAA+TGG | 0.648331 | 1_2:+69546500 | None:intergenic |
AGTGAGATCGGTTTCAACTG+TGG | 0.648718 | 1_2:-69547046 | Msa0088460:CDS |
GTAAGTCAACATGATGGACC+TGG | 0.649655 | 1_2:-69549315 | Msa0088460:CDS |
TACCGTGAAGTACTATACAA+AGG | 0.653255 | 1_2:-69547460 | Msa0088460:CDS |
AAAACTGAGAAATGGGCAGG+AGG | 0.656721 | 1_2:-69546135 | Msa0088460:CDS |
ACAAAACTCTACAAAGGACA+AGG | 0.665601 | 1_2:-69549708 | Msa0088460:CDS |
TTATATGTTGATCATAGCAG+AGG | 0.670339 | 1_2:-69546111 | Msa0088460:CDS |
AAGGTGTTAGAGGGTCAAGT+GGG | 0.671650 | 1_2:+69549970 | None:intergenic |
ATATCTGTAAGTCAACATGA+TGG | 0.685391 | 1_2:-69549321 | Msa0088460:CDS |
GAATGGTAACTGTGATGCAG+TGG | 0.687597 | 1_2:+69549656 | None:intergenic |
AGTTACATAAGAGCATGATG+AGG | 0.688695 | 1_2:+69550018 | None:intergenic |
ACTATGACAAAGGCTTGACG+AGG | 0.716443 | 1_2:+69549792 | None:intergenic |
TCAAATCCACCACTCAACGT+AGG | 0.724526 | 1_2:+69545840 | None:intergenic |
ATGATTTGAGGATTATGGTG+CGG | 0.736939 | 1_2:+69549931 | None:intergenic |
AGTATGCTGGTGATATCATG+TGG | 0.737902 | 1_2:-69547222 | Msa0088460:CDS |
TTGTGTGTGGCAGATAACTG+AGG | 0.795071 | 1_2:-69547091 | Msa0088460:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTCTTTATAATTTTTTTTT+TGG | - | chr1_2:69546856-69546875 | Msa0088460:intron | 10.0% |
!! | TATTCTTAGATATATTATAA+AGG | - | chr1_2:69546938-69546957 | Msa0088460:intron | 10.0% |
!! | ATTCAAATTATAAAATGATA+TGG | + | chr1_2:69547617-69547636 | None:intergenic | 10.0% |
!! | ATATTAATTAAGAATTGAAA+AGG | + | chr1_2:69547707-69547726 | None:intergenic | 10.0% |
!!! | TAATTGCTATATTTTAAAAT+AGG | - | chr1_2:69549080-69549099 | Msa0088460:intron | 10.0% |
!! | TAATGCATAATATTAGTATA+AGG | + | chr1_2:69546742-69546761 | None:intergenic | 15.0% |
!! | GGTAAAATATCATTTATAAT+AGG | + | chr1_2:69547531-69547550 | None:intergenic | 15.0% |
!!! | GTTTTTAAATTCAATATTAC+TGG | + | chr1_2:69547747-69547766 | None:intergenic | 15.0% |
!!! | TTACTTGTTATAATTTTGTT+GGG | - | chr1_2:69549023-69549042 | Msa0088460:intron | 15.0% |
!! | TGTTCTCATTAAAAATTATA+AGG | - | chr1_2:69549981-69550000 | Msa0088460:CDS | 15.0% |
!! | ATATATAAATTAGCGACTAA+TGG | - | chr1_2:69546500-69546519 | Msa0088460:CDS | 20.0% |
!! | AAGGATCAAATTGAATATTT+AGG | - | chr1_2:69546635-69546654 | Msa0088460:intron | 20.0% |
!!! | AATGTTGTCTAATTTTTTTG+TGG | - | chr1_2:69546694-69546713 | Msa0088460:intron | 20.0% |
!!! | CTTCAAACTATGTTTTTTTA+AGG | + | chr1_2:69546827-69546846 | None:intergenic | 20.0% |
!!! | TTTTAAAACTGTTATACTGT+TGG | - | chr1_2:69546906-69546925 | Msa0088460:intron | 20.0% |
!! | AAGGAAAAAAAAATAAGTCA+GGG | + | chr1_2:69547143-69547162 | None:intergenic | 20.0% |
!! | TCTGGAAAAAAAAAATTTGA+AGG | + | chr1_2:69547162-69547181 | None:intergenic | 20.0% |
!!! | AATTTTTCGGAGAAAAAATT+CGG | + | chr1_2:69547191-69547210 | None:intergenic | 20.0% |
!!! | CTGAAAAAACTGAAATTTTT+CGG | + | chr1_2:69547204-69547223 | None:intergenic | 20.0% |
!! | TAGAAAAACACATTGTTAAT+GGG | + | chr1_2:69547673-69547692 | None:intergenic | 20.0% |
!! | TTAGAAAAACACATTGTTAA+TGG | + | chr1_2:69547674-69547693 | None:intergenic | 20.0% |
!! | TAGAGAAACACATTATTAAT+GGG | + | chr1_2:69547937-69547956 | None:intergenic | 20.0% |
!! | TTAGAGAAACACATTATTAA+TGG | + | chr1_2:69547938-69547957 | None:intergenic | 20.0% |
!! | TAAAAAACTACAATGATTGA+TGG | - | chr1_2:69548023-69548042 | Msa0088460:intron | 20.0% |
!! | TTCATTCATATTAGATATGT+TGG | + | chr1_2:69548072-69548091 | None:intergenic | 20.0% |
!! | ATTGATGCTAAAGAAATTAT+TGG | + | chr1_2:69548197-69548216 | None:intergenic | 20.0% |
!!! | TTTGTTTCTTTAATCAAACT+TGG | - | chr1_2:69548795-69548814 | Msa0088460:intron | 20.0% |
!!! | GTTACTTGTTATAATTTTGT+TGG | - | chr1_2:69549022-69549041 | Msa0088460:intron | 20.0% |
!!! | TGCTATATTTTAAAATAGGT+TGG | - | chr1_2:69549084-69549103 | Msa0088460:intron | 20.0% |
!!! | GCTATATTTTAAAATAGGTT+GGG | - | chr1_2:69549085-69549104 | Msa0088460:intron | 20.0% |
!!! | CCTTGTTTTGTTTTTTTATT+AGG | + | chr1_2:69549423-69549442 | None:intergenic | 20.0% |
!! | CCTAATAAAAAAACAAAACA+AGG | - | chr1_2:69549420-69549439 | Msa0088460:CDS | 20.0% |
!! | ATTCACTAATTATAATGTGT+GGG | - | chr1_2:69549527-69549546 | Msa0088460:CDS | 20.0% |
!!! | AATCTATGTAATTTTCTCAA+GGG | - | chr1_2:69550018-69550037 | Msa0088460:CDS | 20.0% |
! | TTCTTCAACGAATGTTTAAA+CGG | + | chr1_2:69546078-69546097 | None:intergenic | 25.0% |
! | CAAAATTGTTAGGATGAAAT+TGG | + | chr1_2:69546467-69546486 | None:intergenic | 25.0% |
!!! | TCTAATTTTTTTGTGGTGAT+CGG | - | chr1_2:69546701-69546720 | Msa0088460:intron | 25.0% |
! | CATAATATTAGTATAAGGTC+TGG | + | chr1_2:69546737-69546756 | None:intergenic | 25.0% |
!!! | TTTTTAAGGAACTTCAAACT+AGG | + | chr1_2:69546813-69546832 | None:intergenic | 25.0% |
! | TTAACTGATTAAACTTTGCA+GGG | + | chr1_2:69547428-69547447 | None:intergenic | 25.0% |
! | TTTAACTGATTAAACTTTGC+AGG | + | chr1_2:69547427-69547446 | None:intergenic | 25.0% |
! | AGGAAAAAAAAATAAGTCAG+GGG | + | chr1_2:69547142-69547161 | None:intergenic | 25.0% |
! | GAAGGAAAAAAAAATAAGTC+AGG | + | chr1_2:69547144-69547163 | None:intergenic | 25.0% |
!!! | ATTTTTCGGAGAAAAAATTC+GGG | + | chr1_2:69547190-69547209 | None:intergenic | 25.0% |
! | TTAAGGAAAAAAAATAAGCC+AGG | - | chr1_2:69547327-69547346 | Msa0088460:CDS | 25.0% |
! | TAAGGAAAAAAAATAAGCCA+GGG | - | chr1_2:69547328-69547347 | Msa0088460:CDS | 25.0% |
! | TTTAACTGATTAAACTTTGC+AGG | - | chr1_2:69547427-69547446 | Msa0088460:CDS | 25.0% |
! | TTAACTGATTAAACTTTGCA+GGG | - | chr1_2:69547428-69547447 | Msa0088460:CDS | 25.0% |
!!! | TATCTTATTTTTGTGCTAAG+CGG | + | chr1_2:69547552-69547571 | None:intergenic | 25.0% |
! | AAAAACTACAATGATTCTGA+TGG | - | chr1_2:69547761-69547780 | Msa0088460:intron | 25.0% |
! | ATATGTTTAGTTAGAATGCA+AGG | + | chr1_2:69547864-69547883 | None:intergenic | 25.0% |
!! | AAACACATTATTAATGGGTA+TGG | + | chr1_2:69547932-69547951 | None:intergenic | 25.0% |
! | TGTTAATTAAGAGTTTGAAG+AGG | + | chr1_2:69547971-69547990 | None:intergenic | 25.0% |
!! | ACAATTTTCTTTGATCAGTT+GGG | - | chr1_2:69548130-69548149 | Msa0088460:intron | 25.0% |
!! | AAAGCATTAGATATCTTAAC+AGG | + | chr1_2:69548443-69548462 | None:intergenic | 25.0% |
! | TATATATGGCATAACACATT+TGG | + | chr1_2:69548753-69548772 | None:intergenic | 25.0% |
! | AAACAAATGATCCAAATTTC+AGG | + | chr1_2:69548782-69548801 | None:intergenic | 25.0% |
!!! | TTCTTTGATTTGATCTGTAT+TGG | + | chr1_2:69549148-69549167 | None:intergenic | 25.0% |
! | CAAGATAATAGGTAAAGAAA+TGG | + | chr1_2:69549221-69549240 | None:intergenic | 25.0% |
! | ACAAAACAAGGAAATCAAAT+TGG | - | chr1_2:69549432-69549451 | Msa0088460:CDS | 25.0% |
! | CAAAACAAGGAAATCAAATT+GGG | - | chr1_2:69549433-69549452 | Msa0088460:CDS | 25.0% |
! | CATTCACTAATTATAATGTG+TGG | - | chr1_2:69549526-69549545 | Msa0088460:CDS | 25.0% |
! | ATACAACAAAACTGAGAAAT+GGG | - | chr1_2:69549557-69549576 | Msa0088460:CDS | 25.0% |
!! | GTGAGAAATTGTTAATGTTT+TGG | - | chr1_2:69549722-69549741 | Msa0088460:CDS | 25.0% |
! | ATGAATTGAATTGAATGTGT+AGG | - | chr1_2:69549749-69549768 | Msa0088460:CDS | 25.0% |
! | TGAATTGAATTGAATGTGTA+GGG | - | chr1_2:69549750-69549769 | Msa0088460:CDS | 25.0% |
! | AGAACAAGGATATTGTATTA+TGG | - | chr1_2:69549785-69549804 | Msa0088460:CDS | 25.0% |
!! | CAATCTATGTAATTTTCTCA+AGG | - | chr1_2:69550017-69550036 | Msa0088460:CDS | 25.0% |
! | TTACTGATCAGATCAAATAT+GGG | + | chr1_2:69550070-69550089 | None:intergenic | 25.0% |
! | TTTACTGATCAGATCAAATA+TGG | + | chr1_2:69550071-69550090 | None:intergenic | 25.0% |
TACATAGTTGACTACTTAAC+TGG | - | chr1_2:69545601-69545620 | Msa0088460:three_prime_UTR | 30.0% | |
TTGGTATGATTTGAGGATTA+TGG | + | chr1_2:69545776-69545795 | None:intergenic | 30.0% | |
!! | AATCTCACTTTTCATTACGT+TGG | - | chr1_2:69545808-69545827 | Msa0088460:three_prime_UTR | 30.0% |
!!! | GTAGAGTTTTGTTGAGATTA+TGG | + | chr1_2:69545983-69546002 | None:intergenic | 30.0% |
ATCTCAACAAAACTCTACAA+AGG | - | chr1_2:69545985-69546004 | Msa0088460:three_prime_UTR | 30.0% | |
!!! | TGTTTTATGTGCTGCTTTTA+CGG | - | chr1_2:69546119-69546138 | Msa0088460:CDS | 30.0% |
! | GTGAAGTGTTATTACAAGAA+TGG | - | chr1_2:69546183-69546202 | Msa0088460:CDS | 30.0% |
! | TAATTTGTATGCAAGACCAT+TGG | - | chr1_2:69546212-69546231 | Msa0088460:CDS | 30.0% |
CTTGATGAAATGAGAATTGT+TGG | - | chr1_2:69546258-69546277 | Msa0088460:CDS | 30.0% | |
ATATCTGTAAGTCAACATGA+TGG | - | chr1_2:69546378-69546397 | Msa0088460:CDS | 30.0% | |
TTTACAAGACTATTACCTGA+CGG | + | chr1_2:69546430-69546449 | None:intergenic | 30.0% | |
TGTGATGCAACAAAATTGTT+AGG | + | chr1_2:69546477-69546496 | None:intergenic | 30.0% | |
! | GATCCTTCAAAATTTTCTTG+CGG | + | chr1_2:69546622-69546641 | None:intergenic | 30.0% |
!!! | CTAATTTTTTTGTGGTGATC+GGG | - | chr1_2:69546702-69546721 | Msa0088460:intron | 30.0% |
!!! | TAATTTTTTTGTGGTGATCG+GGG | - | chr1_2:69546703-69546722 | Msa0088460:intron | 30.0% |
ACTTCAAACTAGGTTAAATG+CGG | + | chr1_2:69546803-69546822 | None:intergenic | 30.0% | |
TAACTGATTAAACTTTGCAG+GGG | + | chr1_2:69547429-69547448 | None:intergenic | 30.0% | |
!! | TTTTTGGTAAATTGCTGATG+TGG | + | chr1_2:69547096-69547115 | None:intergenic | 30.0% |
CATCAGCAATTTACCAAAAA+TGG | - | chr1_2:69547096-69547115 | Msa0088460:intron | 30.0% | |
CAATTTACCAAAAATGGCAT+GGG | - | chr1_2:69547102-69547121 | Msa0088460:intron | 30.0% | |
GAAAAAATTCGGGAAAAATC+TGG | + | chr1_2:69547180-69547199 | None:intergenic | 30.0% | |
AAGGAAAAAAAATAAGCCAG+GGG | - | chr1_2:69547329-69547348 | Msa0088460:CDS | 30.0% | |
TAACTGATTAAACTTTGCAG+GGG | - | chr1_2:69547429-69547448 | Msa0088460:CDS | 30.0% | |
! | GTATTTTCAAATATCAGCTG+TGG | + | chr1_2:69547814-69547833 | None:intergenic | 30.0% |
AAATACTACATGCGTAATAG+TGG | - | chr1_2:69547828-69547847 | Msa0088460:intron | 30.0% | |
AATACTACATGCGTAATAGT+GGG | - | chr1_2:69547829-69547848 | Msa0088460:intron | 30.0% | |
GTTAGAATGCAAGGAAAAAA+TGG | + | chr1_2:69547855-69547874 | None:intergenic | 30.0% | |
! | GACAATTTTCTTTGATCAGT+TGG | - | chr1_2:69548129-69548148 | Msa0088460:intron | 30.0% |
ATCCTTTGTATAGTACTTCA+CGG | + | chr1_2:69548244-69548263 | None:intergenic | 30.0% | |
TGTAATACCATTCTTCACTT+GGG | + | chr1_2:69548298-69548317 | None:intergenic | 30.0% | |
ATATTCACCACAATCAAAGT+AGG | + | chr1_2:69548324-69548343 | None:intergenic | 30.0% | |
TACTTTGATTGTGGTGAATA+TGG | - | chr1_2:69548323-69548342 | Msa0088460:intron | 30.0% | |
AAGAAATCACCACTTCATTT+GGG | + | chr1_2:69548523-69548542 | None:intergenic | 30.0% | |
AAAGAAATCACCACTTCATT+TGG | + | chr1_2:69548524-69548543 | None:intergenic | 30.0% | |
! | TTATGACTATTGATTGTGTG+TGG | - | chr1_2:69548595-69548614 | Msa0088460:intron | 30.0% |
TGTAAGCTTAATAGTGAGAT+CGG | - | chr1_2:69548641-69548660 | Msa0088460:intron | 30.0% | |
ACTATGACTACGTTATAGAT+TGG | - | chr1_2:69548679-69548698 | Msa0088460:intron | 30.0% | |
CTATGACTACGTTATAGATT+GGG | - | chr1_2:69548680-69548699 | Msa0088460:intron | 30.0% | |
ATTTCAGGCATGACTATATA+TGG | + | chr1_2:69548767-69548786 | None:intergenic | 30.0% | |
ATATAGTCATGCCTGAAATT+TGG | - | chr1_2:69548768-69548787 | Msa0088460:intron | 30.0% | |
TTCTCTAGCATTTAAACGTA+AGG | + | chr1_2:69548933-69548952 | None:intergenic | 30.0% | |
AAATGCTAGAGAACATGATA+TGG | - | chr1_2:69548940-69548959 | Msa0088460:intron | 30.0% | |
ACTATCACATTTCCGTTTAA+CGG | + | chr1_2:69548967-69548986 | None:intergenic | 30.0% | |
TACTGGTATATTAGGGATTA+AGG | - | chr1_2:69549110-69549129 | Msa0088460:intron | 30.0% | |
CAAATCAAAGAAGACATACA+TGG | - | chr1_2:69549156-69549175 | Msa0088460:intron | 30.0% | |
AATAGGTAAAGAAATGGTCA+TGG | + | chr1_2:69549215-69549234 | None:intergenic | 30.0% | |
AATGTCAAGGTCAAGATAAT+AGG | + | chr1_2:69549232-69549251 | None:intergenic | 30.0% | |
TGAAAGATCAAACAATACCT+AGG | - | chr1_2:69549301-69549320 | Msa0088460:CDS | 30.0% | |
CAATACCTAGGAAAAGTTAT+TGG | - | chr1_2:69549313-69549332 | Msa0088460:CDS | 30.0% | |
AAGTTATTGGACTGTTGTAA+AGG | - | chr1_2:69549326-69549345 | Msa0088460:CDS | 30.0% | |
TAATCATCAGTTAGCAAAAG+TGG | + | chr1_2:69549489-69549508 | None:intergenic | 30.0% | |
GATGATTATCCACAAATTAG+AGG | - | chr1_2:69549501-69549520 | Msa0088460:CDS | 30.0% | |
!!! | CATTTCTCAGTTTTGTTGTA+TGG | + | chr1_2:69549558-69549577 | None:intergenic | 30.0% |
CATACAACAAAACTGAGAAA+TGG | - | chr1_2:69549556-69549575 | Msa0088460:CDS | 30.0% | |
TTATATGTTGATCATAGCAG+AGG | - | chr1_2:69549588-69549607 | Msa0088460:CDS | 30.0% | |
! | AAGGTGAGTCCATTAAATTT+TGG | - | chr1_2:69549638-69549657 | Msa0088460:CDS | 30.0% |
TGAGCAAAGCCAAAATTTAA+TGG | + | chr1_2:69549650-69549669 | None:intergenic | 30.0% | |
TATTGTATTATGGCACACAA+TGG | - | chr1_2:69549795-69549814 | Msa0088460:CDS | 30.0% | |
ATTGTATTATGGCACACAAT+GGG | - | chr1_2:69549796-69549815 | Msa0088460:CDS | 30.0% | |
!!! | GGTGATTTTGTTTTAAGAAC+AGG | + | chr1_2:69549916-69549935 | None:intergenic | 30.0% |
! | TAATGTTGAAAAGTGCAGTT+GGG | + | chr1_2:69549955-69549974 | None:intergenic | 30.0% |
TAGTTGACTACTTAACTGGT+TGG | - | chr1_2:69545605-69545624 | Msa0088460:three_prime_UTR | 35.0% | |
! | CACTCTTGTTGTATGATCTT+TGG | + | chr1_2:69545632-69545651 | None:intergenic | 35.0% |
! | AGTTACATAAGAGCATGATG+AGG | + | chr1_2:69545684-69545703 | None:intergenic | 35.0% |
AGGAATATGACTGCATTCTA+TGG | + | chr1_2:69545707-69545726 | None:intergenic | 35.0% | |
!! | TGATTTCTGAAGGTGTTAGA+GGG | + | chr1_2:69545741-69545760 | None:intergenic | 35.0% |
!! | TTGATTTCTGAAGGTGTTAG+AGG | + | chr1_2:69545742-69545761 | None:intergenic | 35.0% |
ATGATTTGAGGATTATGGTG+CGG | + | chr1_2:69545771-69545790 | None:intergenic | 35.0% | |
!! | GTTTGGTTTGGTATGATTTG+AGG | + | chr1_2:69545783-69545802 | None:intergenic | 35.0% |
AAAAGTGAGATTGTGGTGTT+TGG | + | chr1_2:69545800-69545819 | None:intergenic | 35.0% | |
CGTAATGAAAAGTGAGATTG+TGG | + | chr1_2:69545807-69545826 | None:intergenic | 35.0% | |
TGATTGAATGAGAGGTTTGT+CGG | + | chr1_2:69545845-69545864 | None:intergenic | 35.0% | |
ACAAACCTCTCATTCAATCA+TGG | - | chr1_2:69545845-69545864 | Msa0088460:three_prime_UTR | 35.0% | |
!!! | AAGAGTTTTGGTTTTGGTGT+TGG | + | chr1_2:69545878-69545897 | None:intergenic | 35.0% |
!!! | TGGAAGAAGAGTTTTGGTTT+TGG | + | chr1_2:69545884-69545903 | None:intergenic | 35.0% |
TTGGAACCTTACTATGACAA+AGG | + | chr1_2:69545920-69545939 | None:intergenic | 35.0% | |
! | TGATTTCGAGGGATTGTTTT+TGG | + | chr1_2:69545939-69545958 | None:intergenic | 35.0% |
AAAGTCTACGATGATTTCGA+GGG | + | chr1_2:69545950-69545969 | None:intergenic | 35.0% | |
AAAAGTCTACGATGATTTCG+AGG | + | chr1_2:69545951-69545970 | None:intergenic | 35.0% | |
ACAAAACTCTACAAAGGACA+AGG | - | chr1_2:69545991-69546010 | Msa0088460:three_prime_UTR | 35.0% | |
TTAAACGGTTCATAGGTGAA+TGG | + | chr1_2:69546063-69546082 | None:intergenic | 35.0% | |
CGAATGTTTAAACGGTTCAT+AGG | + | chr1_2:69546070-69546089 | None:intergenic | 35.0% | |
ACAGATATGCCTTTAAGCTT+TGG | + | chr1_2:69546366-69546385 | None:intergenic | 35.0% | |
! | AAAAAGGATTAGCGATTGCA+GGG | + | chr1_2:69547013-69547032 | None:intergenic | 35.0% |
! | AAAAAAGGATTAGCGATTGC+AGG | + | chr1_2:69547014-69547033 | None:intergenic | 35.0% |
TTTGCAGGGGCAAAAAAAAA+AGG | + | chr1_2:69547029-69547048 | None:intergenic | 35.0% | |
GCAATTTACCAAAAATGGCA+TGG | - | chr1_2:69547101-69547120 | Msa0088460:intron | 35.0% | |
CAATTTACCAAAAACGGCAT+GGG | + | chr1_2:69547369-69547388 | None:intergenic | 35.0% | |
CGTCAGCAATTTACCAAAAA+CGG | + | chr1_2:69547375-69547394 | None:intergenic | 35.0% | |
!! | TTTTTGGTAAATTGCTGACG+TGG | - | chr1_2:69547375-69547394 | Msa0088460:CDS | 35.0% |
AAAACTTGCAAGACATGCAT+AGG | + | chr1_2:69547591-69547610 | None:intergenic | 35.0% | |
! | AACACATTGTTAATGGGTCA+GGG | + | chr1_2:69547667-69547686 | None:intergenic | 35.0% |
! | AAACACATTGTTAATGGGTC+AGG | + | chr1_2:69547668-69547687 | None:intergenic | 35.0% |
TTTCAAATATCAGCTGTGGT+TGG | + | chr1_2:69547810-69547829 | None:intergenic | 35.0% | |
TCCTAAATGGAAAACCCAAT+TGG | + | chr1_2:69548156-69548175 | None:intergenic | 35.0% | |
CTTGAATGTCGAATCCTAAA+TGG | + | chr1_2:69548169-69548188 | None:intergenic | 35.0% | |
TTAGGATTCGACATTCAAGT+TGG | - | chr1_2:69548170-69548189 | Msa0088460:intron | 35.0% | |
! | TACCGTGAAGTACTATACAA+AGG | - | chr1_2:69548239-69548258 | Msa0088460:intron | 35.0% |
GTGTAATACCATTCTTCACT+TGG | + | chr1_2:69548299-69548318 | None:intergenic | 35.0% | |
TACACAACCTACTTTGATTG+TGG | - | chr1_2:69548314-69548333 | Msa0088460:intron | 35.0% | |
!! | TGCATTTTTGAGAAGTATGC+TGG | - | chr1_2:69548464-69548483 | Msa0088460:intron | 35.0% |
AATTGCAATCCCAAATGAAG+TGG | - | chr1_2:69548511-69548530 | Msa0088460:intron | 35.0% | |
ACATGATATGGTCCGTTAAA+CGG | - | chr1_2:69548952-69548971 | Msa0088460:intron | 35.0% | |
! | TTAAAATAGGTTGGGCTTAC+TGG | - | chr1_2:69549093-69549112 | Msa0088460:intron | 35.0% |
TTGGGCTTACTGGTATATTA+GGG | - | chr1_2:69549103-69549122 | Msa0088460:intron | 35.0% | |
GTATATTAGGGATTAAGGCA+GGG | - | chr1_2:69549115-69549134 | Msa0088460:intron | 35.0% | |
TATCTTGACCTTGACATTGA+TGG | - | chr1_2:69549234-69549253 | Msa0088460:intron | 35.0% | |
! | ATTTGTCTTGACAAAGGTGT+TGG | + | chr1_2:69549265-69549284 | None:intergenic | 35.0% |
CACCTTTGTCAAGACAAATT+TGG | - | chr1_2:69549266-69549285 | Msa0088460:intron | 35.0% | |
CTCCAAATTTGTCTTGACAA+AGG | + | chr1_2:69549271-69549290 | None:intergenic | 35.0% | |
! | ACAGTCCAATAACTTTTCCT+AGG | + | chr1_2:69549321-69549340 | None:intergenic | 35.0% |
TTTACCACTAGTAACTCAGA+AGG | + | chr1_2:69549399-69549418 | None:intergenic | 35.0% | |
GTGATGATACTTTAGCAGTT+TGG | - | chr1_2:69549610-69549629 | Msa0088460:CDS | 35.0% | |
TGAATTGAATGTGTAGGGAT+AGG | - | chr1_2:69549755-69549774 | Msa0088460:CDS | 35.0% | |
GAATTGAATGTGTAGGGATA+GGG | - | chr1_2:69549756-69549775 | Msa0088460:CDS | 35.0% | |
ATTTCATCATGTTCCTTCTC+AGG | - | chr1_2:69549819-69549838 | Msa0088460:CDS | 35.0% | |
TTCCTCTCAAAGAAATTGGT+TGG | + | chr1_2:69549892-69549911 | None:intergenic | 35.0% | |
AGGATTCCTCTCAAAGAAAT+TGG | + | chr1_2:69549896-69549915 | None:intergenic | 35.0% | |
! | CTAATGTTGAAAAGTGCAGT+TGG | + | chr1_2:69549956-69549975 | None:intergenic | 35.0% |
CAGTAAAATTCCTATGTGAC+TGG | - | chr1_2:69550084-69550103 | Msa0088460:five_prime_UTR | 35.0% | |
! | TAAGAGCATGATGAGGAGAA+AGG | + | chr1_2:69545677-69545696 | None:intergenic | 40.0% |
TGAGATTGTGGTGTTTGGTT+TGG | + | chr1_2:69545795-69545814 | None:intergenic | 40.0% | |
GATTGAATGAGAGGTTTGTC+GGG | + | chr1_2:69545844-69545863 | None:intergenic | 40.0% | |
GATAGCCATGATTGAATGAG+AGG | + | chr1_2:69545853-69545872 | None:intergenic | 40.0% | |
!!! | AGTTTTGGTTTTGGTGTTGG+AGG | + | chr1_2:69545875-69545894 | None:intergenic | 40.0% |
GTCAAGCCTTTGTCATAGTA+AGG | - | chr1_2:69545911-69545930 | Msa0088460:three_prime_UTR | 40.0% | |
GTTCACCAAAGGTAAGGATA+GGG | + | chr1_2:69546020-69546039 | None:intergenic | 40.0% | |
TGTTCACCAAAGGTAAGGAT+AGG | + | chr1_2:69546021-69546040 | None:intergenic | 40.0% | |
!! | TGGTTTGTTCACCAAAGGTA+AGG | + | chr1_2:69546026-69546045 | None:intergenic | 40.0% |
!!! | TTATGTGCTGCTTTTACGGT+AGG | - | chr1_2:69546123-69546142 | Msa0088460:CDS | 40.0% |
TTTGTATGCAAGACCATTGG+AGG | - | chr1_2:69546215-69546234 | Msa0088460:CDS | 40.0% | |
TTGTATGCAAGACCATTGGA+GGG | - | chr1_2:69546216-69546235 | Msa0088460:CDS | 40.0% | |
! | TACTCAGTTCCTTCAGCTTT+TGG | + | chr1_2:69546312-69546331 | None:intergenic | 40.0% |
!! | CCTTTAAGCTTTGGACCAAA+CGG | + | chr1_2:69546357-69546376 | None:intergenic | 40.0% |
! | GAGCCGCAAGAAAATTTTGA+AGG | - | chr1_2:69546616-69546635 | Msa0088460:intron | 40.0% |
TTGTCCTCGTAAGCTTAACT+CGG | + | chr1_2:69546775-69546794 | None:intergenic | 40.0% | |
TGTTATTCGTCCCTGCAAAT+AGG | - | chr1_2:69546969-69546988 | Msa0088460:intron | 40.0% | |
GTTATTCGTCCCTGCAAATA+GGG | - | chr1_2:69546970-69546989 | Msa0088460:intron | 40.0% | |
TTATTCGTCCCTGCAAATAG+GGG | - | chr1_2:69546971-69546990 | Msa0088460:intron | 40.0% | |
TGATGTGGCAGTGATTAACT+GGG | + | chr1_2:69547081-69547100 | None:intergenic | 40.0% | |
!!! | GTCAATTCCCATGCCATTTT+TGG | + | chr1_2:69547112-69547131 | None:intergenic | 40.0% |
GCAATTTACCAAAAACGGCA+TGG | + | chr1_2:69547370-69547389 | None:intergenic | 40.0% | |
TCCTTTGACCCAGTTAATCA+CGG | + | chr1_2:69547070-69547089 | None:intergenic | 40.0% | |
TTTGATCAGTTGGGCCAATT+GGG | - | chr1_2:69548139-69548158 | Msa0088460:intron | 40.0% | |
! | GCCAATTGGGTTTTCCATTT+AGG | - | chr1_2:69548152-69548171 | Msa0088460:intron | 40.0% |
GATTGTGGTGAATATGGCTT+TGG | - | chr1_2:69548329-69548348 | Msa0088460:intron | 40.0% | |
AAGCAGAATAGTATGCGTCT+AGG | + | chr1_2:69548409-69548428 | None:intergenic | 40.0% | |
GCATACTATTCTGCTTCAGA+TGG | - | chr1_2:69548413-69548432 | Msa0088460:intron | 40.0% | |
AGTATGCTGGTGATATCATG+TGG | - | chr1_2:69548477-69548496 | Msa0088460:intron | 40.0% | |
CAAGTGGTAGCATCAAACTT+GGG | - | chr1_2:69548712-69548731 | Msa0088460:intron | 40.0% | |
AAGTGGTAGCATCAAACTTG+GGG | - | chr1_2:69548713-69548732 | Msa0088460:intron | 40.0% | |
GTTGGGCTTACTGGTATATT+AGG | - | chr1_2:69549102-69549121 | Msa0088460:intron | 40.0% | |
GGTATATTAGGGATTAAGGC+AGG | - | chr1_2:69549114-69549133 | Msa0088460:intron | 40.0% | |
TTGCTAGCTGATAACACCAT+TGG | - | chr1_2:69549183-69549202 | Msa0088460:intron | 40.0% | |
TAAGCCTTCTGAGTTACTAG+TGG | - | chr1_2:69549392-69549411 | Msa0088460:CDS | 40.0% | |
GCAAAAGTGGATGCACAATT+GGG | + | chr1_2:69549476-69549495 | None:intergenic | 40.0% | |
AGCAAAAGTGGATGCACAAT+TGG | + | chr1_2:69549477-69549496 | None:intergenic | 40.0% | |
GTGAATGCACCTCTAATTTG+TGG | + | chr1_2:69549513-69549532 | None:intergenic | 40.0% | |
AACAAAACTGAGAAATGGGC+AGG | - | chr1_2:69549561-69549580 | Msa0088460:CDS | 40.0% | |
! | CTTTAGCAGTTTGGAGTCTA+AGG | - | chr1_2:69549619-69549638 | Msa0088460:CDS | 40.0% |
ACTGGATAATCTTCCTGAGA+AGG | + | chr1_2:69549835-69549854 | None:intergenic | 40.0% | |
GACCAACCAATTTCTTTGAG+AGG | - | chr1_2:69549887-69549906 | Msa0088460:CDS | 40.0% | |
AATCACCAAAGCCTATGCAT+TGG | - | chr1_2:69549929-69549948 | Msa0088460:CDS | 40.0% | |
ACAACAAAGACCAGTCACAT+AGG | + | chr1_2:69550097-69550116 | None:intergenic | 40.0% | |
! | AAGGTGTTAGAGGGTCAAGT+GGG | + | chr1_2:69545732-69545751 | None:intergenic | 45.0% |
! | CGGACAAGGTTGATTTCTGA+AGG | + | chr1_2:69545751-69545770 | None:intergenic | 45.0% |
!!! | AGGTGGTGGAAGAAGAGTTT+TGG | + | chr1_2:69545890-69545909 | None:intergenic | 45.0% |
ACTATGACAAAGGCTTGACG+AGG | + | chr1_2:69545910-69545929 | None:intergenic | 45.0% | |
!! | TGCAGTGGTTTGTTCACCAA+AGG | + | chr1_2:69546031-69546050 | None:intergenic | 45.0% |
GAATGGTAACTGTGATGCAG+TGG | + | chr1_2:69546046-69546065 | None:intergenic | 45.0% | |
!!! | GCTTTTACGGTAGGTTGGTT+TGG | - | chr1_2:69546132-69546151 | Msa0088460:CDS | 45.0% |
ATTCCAGTGCCAAAAGCTGA+AGG | - | chr1_2:69546300-69546319 | Msa0088460:CDS | 45.0% | |
! | TCTAAGATGAAGCCACCGTT+TGG | - | chr1_2:69546339-69546358 | Msa0088460:CDS | 45.0% |
!! | TTAAGCTTTGGACCAAACGG+TGG | + | chr1_2:69546354-69546373 | None:intergenic | 45.0% |
CCGTTTGGTCCAAAGCTTAA+AGG | - | chr1_2:69546354-69546373 | Msa0088460:CDS | 45.0% | |
!! | GTAAGTCAACATGATGGACC+TGG | - | chr1_2:69546384-69546403 | Msa0088460:CDS | 45.0% |
TTAAGCGACCCCTATTTGCA+GGG | + | chr1_2:69547487-69547506 | None:intergenic | 45.0% | |
TTTAAGCGACCCCTATTTGC+AGG | + | chr1_2:69547486-69547505 | None:intergenic | 45.0% | |
GCAGTGATTAACTGGGTCAA+AGG | + | chr1_2:69547074-69547093 | None:intergenic | 45.0% | |
CTGATGTGGCAGTGATTAAC+TGG | + | chr1_2:69547082-69547101 | None:intergenic | 45.0% | |
GGAATTGACGAAAATACCCC+TGG | + | chr1_2:69547123-69547142 | None:intergenic | 45.0% | |
!!! | GTCAATTCCCATGCCGTTTT+TGG | - | chr1_2:69547359-69547378 | Msa0088460:CDS | 45.0% |
TTTAAGCGACCCCTATTTGC+AGG | - | chr1_2:69547486-69547505 | Msa0088460:CDS | 45.0% | |
TTAAGCGACCCCTATTTGCA+GGG | - | chr1_2:69547487-69547506 | Msa0088460:CDS | 45.0% | |
TGATTCGTCCCTGCAAATAG+GGG | + | chr1_2:69547498-69547517 | None:intergenic | 45.0% | |
GTGATTCGTCCCTGCAAATA+GGG | + | chr1_2:69547499-69547518 | None:intergenic | 45.0% | |
TGTGATTCGTCCCTGCAAAT+AGG | + | chr1_2:69547500-69547519 | None:intergenic | 45.0% | |
CTTTGATCAGTTGGGCCAAT+TGG | - | chr1_2:69548138-69548157 | Msa0088460:intron | 45.0% | |
TCTTCACTTGGGTCTTGGTA+TGG | + | chr1_2:69548287-69548306 | None:intergenic | 45.0% | |
ACCAAGACCCAAGTGAAGAA+TGG | - | chr1_2:69548288-69548307 | Msa0088460:intron | 45.0% | |
ACCATTCTTCACTTGGGTCT+TGG | + | chr1_2:69548292-69548311 | None:intergenic | 45.0% | |
TTGGCAGGACAATCTGTGAA+AGG | + | chr1_2:69548377-69548396 | None:intergenic | 45.0% | |
TTGTGTGTGGCAGATAACTG+AGG | - | chr1_2:69548608-69548627 | Msa0088460:intron | 45.0% | |
! | AGTGAGATCGGTTTCAACTG+TGG | - | chr1_2:69548653-69548672 | Msa0088460:intron | 45.0% |
! | GTGAGATCGGTTTCAACTGT+GGG | - | chr1_2:69548654-69548673 | Msa0088460:intron | 45.0% |
GATTGGGAGTTTAAGCCAAG+TGG | - | chr1_2:69548696-69548715 | Msa0088460:intron | 45.0% | |
CCAAGTTTGATGCTACCACT+TGG | + | chr1_2:69548714-69548733 | None:intergenic | 45.0% | |
CCAAGTGGTAGCATCAAACT+TGG | - | chr1_2:69548711-69548730 | Msa0088460:intron | 45.0% | |
GTAGCATCAAACTTGGGGTA+TGG | - | chr1_2:69548718-69548737 | Msa0088460:intron | 45.0% | |
ACTCCACGTCAGTATCTTCA+TGG | - | chr1_2:69548995-69549014 | Msa0088460:intron | 45.0% | |
TGTCCATGAAGATACTGACG+TGG | + | chr1_2:69549001-69549020 | None:intergenic | 45.0% | |
ATGGTCATGGTAGACACCAA+TGG | + | chr1_2:69549202-69549221 | None:intergenic | 45.0% | |
TGGCTTCACCATCAATGTCA+AGG | + | chr1_2:69549245-69549264 | None:intergenic | 45.0% | |
GCTGATGCAAGAGTCAACAT+TGG | - | chr1_2:69549366-69549385 | Msa0088460:CDS | 45.0% | |
AAAACTGAGAAATGGGCAGG+AGG | - | chr1_2:69549564-69549583 | Msa0088460:CDS | 45.0% | |
GGATAGGGAGATTGAGAACA+AGG | - | chr1_2:69549771-69549790 | Msa0088460:CDS | 45.0% | |
TCAAATCCACCACTCAACGT+AGG | + | chr1_2:69549862-69549881 | None:intergenic | 45.0% | |
!! | TTAAAAATCATAAAAAATTT+CGG | + | chr1_2:69547250-69547269 | None:intergenic | 5.0% |
!!! | AAATTTTGAAATTTTTTTTA+AGG | - | chr1_2:69547310-69547329 | Msa0088460:CDS | 5.0% |
!! | GAAGGTGTTAGAGGGTCAAG+TGG | + | chr1_2:69545733-69545752 | None:intergenic | 50.0% |
TGAGGATTATGGTGCGGACA+AGG | + | chr1_2:69545765-69545784 | None:intergenic | 50.0% | |
ATGACAAAGGCTTGACGAGG+TGG | + | chr1_2:69545907-69545926 | None:intergenic | 50.0% | |
GGCTACCCTATCCTTACCTT+TGG | - | chr1_2:69546012-69546031 | Msa0088460:three_prime_UTR | 50.0% | |
!!! | GTGCTGCTTTTACGGTAGGT+TGG | - | chr1_2:69546127-69546146 | Msa0088460:CDS | 50.0% |
!! | TACGGTAGGTTGGTTTGGAG+AGG | - | chr1_2:69546137-69546156 | Msa0088460:CDS | 50.0% |
! | GTTCCTTCAGCTTTTGGCAC+TGG | + | chr1_2:69546306-69546325 | None:intergenic | 50.0% |
TGACCTTGGATGGTGAAACC+AGG | + | chr1_2:69546405-69546424 | None:intergenic | 50.0% | |
ATTACCTGACGGAGTGACCT+TGG | + | chr1_2:69546419-69546438 | None:intergenic | 50.0% | |
TCAGCCGAGTTAAGCTTACG+AGG | - | chr1_2:69546768-69546787 | Msa0088460:intron | 50.0% | |
TGACGTGGCCGTGATTAACT+GGG | - | chr1_2:69547390-69547409 | Msa0088460:CDS | 50.0% | |
GCCGTGATTAACTGGGTCAA+AGG | - | chr1_2:69547397-69547416 | Msa0088460:CDS | 50.0% | |
!! | TCTAGGAAGACAGCATTGGC+AGG | + | chr1_2:69548392-69548411 | None:intergenic | 50.0% |
TGCGTCTAGGAAGACAGCAT+TGG | + | chr1_2:69548396-69548415 | None:intergenic | 50.0% | |
TGTGGCAGATAACTGAGGTC+AGG | - | chr1_2:69548613-69548632 | Msa0088460:intron | 50.0% | |
! | ATTGGGTACCGTTTGCTTCC+AGG | - | chr1_2:69549450-69549469 | Msa0088460:CDS | 50.0% |
CAATTGGGCCTGGAAGCAAA+CGG | + | chr1_2:69549461-69549480 | None:intergenic | 50.0% | |
TTGGGCCAATGCATAGGCTT+TGG | + | chr1_2:69549937-69549956 | None:intergenic | 50.0% | |
GTTAGAGGGTCAAGTGGGTG+AGG | + | chr1_2:69545727-69545746 | None:intergenic | 55.0% | |
ACAAAGGCTTGACGAGGTGG+TGG | + | chr1_2:69545904-69545923 | None:intergenic | 55.0% | |
TGCAAGACCATTGGAGGGTG+TGG | - | chr1_2:69546221-69546240 | Msa0088460:CDS | 55.0% | |
GGACCTGGTTTCACCATCCA+AGG | - | chr1_2:69546399-69546418 | Msa0088460:CDS | 55.0% | |
CTGACGTGGCCGTGATTAAC+TGG | - | chr1_2:69547389-69547408 | Msa0088460:CDS | 55.0% | |
AGTGGATGCACAATTGGGCC+TGG | + | chr1_2:69549471-69549490 | None:intergenic | 55.0% | |
CCACTCAACGTAGGCATGAC+TGG | + | chr1_2:69549853-69549872 | None:intergenic | 55.0% | |
CCAGTCATGCCTACGTTGAG+TGG | - | chr1_2:69549850-69549869 | Msa0088460:CDS | 55.0% | |
GTCATGCCTACGTTGAGTGG+TGG | - | chr1_2:69549853-69549872 | Msa0088460:CDS | 55.0% | |
GTGCAGTTGGGCCAATGCAT+AGG | + | chr1_2:69549943-69549962 | None:intergenic | 55.0% | |
ACAGCTGCCACACCCTCCAA+TGG | + | chr1_2:69546231-69546250 | None:intergenic | 60.0% | |
! | ATTGGAGGGTGTGGCAGCTG+TGG | - | chr1_2:69546230-69546249 | Msa0088460:CDS | 60.0% |
CCTGACGGAGTGACCTTGGA+TGG | + | chr1_2:69546415-69546434 | None:intergenic | 60.0% | |
CCATCCAAGGTCACTCCGTC+AGG | - | chr1_2:69546412-69546431 | Msa0088460:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 69545575 | 69550146 | 69545575 | ID=Msa0088460;Name=Msa0088460 |
chr1_2 | mRNA | 69545575 | 69550146 | 69545575 | ID=Msa0088460-mRNA-1;Parent=Msa0088460;Name=Msa0088460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=77|1|1|1|1|1|4|502|607 |
chr1_2 | exon | 69545575 | 69546619 | 69545575 | ID=Msa0088460-mRNA-1:exon:23896;Parent=Msa0088460-mRNA-1 |
chr1_2 | exon | 69546987 | 69547100 | 69546987 | ID=Msa0088460-mRNA-1:exon:23895;Parent=Msa0088460-mRNA-1 |
chr1_2 | exon | 69547189 | 69547573 | 69547189 | ID=Msa0088460-mRNA-1:exon:23894;Parent=Msa0088460-mRNA-1 |
chr1_2 | exon | 69549288 | 69550146 | 69549288 | ID=Msa0088460-mRNA-1:exon:23893;Parent=Msa0088460-mRNA-1 |
chr1_2 | five_prime_UTR | 69550070 | 69550146 | 69550070 | ID=Msa0088460-mRNA-1:five_prime_utr;Parent=Msa0088460-mRNA-1 |
chr1_2 | CDS | 69549288 | 69550069 | 69549288 | ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1 |
chr1_2 | CDS | 69547189 | 69547573 | 69547189 | ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1 |
chr1_2 | CDS | 69546987 | 69547100 | 69546987 | ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1 |
chr1_2 | CDS | 69546077 | 69546619 | 69546077 | ID=Msa0088460-mRNA-1:cds;Parent=Msa0088460-mRNA-1 |
chr1_2 | three_prime_UTR | 69545575 | 69546076 | 69545575 | ID=Msa0088460-mRNA-1:three_prime_utr;Parent=Msa0088460-mRNA-1 |
Gene Sequence |
Protein sequence |