Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134880 | XP_003592404.1 | 94.774 | 421 | 22 | 0 | 4 | 424 | 255 | 675 | 0.0 | 843 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134880 | sp|Q43077|AMO_PEA | 65.133 | 413 | 143 | 1 | 9 | 421 | 262 | 673 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134880 | G7ID65 | 94.774 | 421 | 22 | 0 | 4 | 424 | 255 | 675 | 0.0 | 843 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088460 | Msa0134880 | 0.878071 | 3.776771e-69 | -8.615850e-47 |
| Msa0134780 | Msa0134880 | 0.875798 | 2.318276e-68 | -8.615850e-47 |
| Msa0134880 | Msa0179700 | 0.867503 | 1.304244e-65 | -8.615850e-47 |
| Msa0134880 | Msa0723090 | 0.804640 | 1.960457e-49 | -8.615850e-47 |
| Msa0134880 | Msa1214310 | 0.808479 | 3.035380e-50 | -8.615850e-47 |
| Msa0134880 | Msa1321060 | 0.838594 | 2.621114e-57 | -8.615850e-47 |
| Msa0134880 | Msa1433360 | 0.805977 | 1.028610e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134880 | MtrunA17_Chr1g0205571 | 94.774 | 421 | 22 | 0 | 4 | 424 | 255 | 675 | 0.0 | 843 |
| Msa0134880 | MtrunA17_Chr4g0065981 | 63.923 | 413 | 148 | 1 | 9 | 421 | 263 | 674 | 0.0 | 585 |
| Msa0134880 | MtrunA17_Chr4g0065961 | 64.563 | 412 | 145 | 1 | 10 | 421 | 257 | 667 | 0.0 | 578 |
| Msa0134880 | MtrunA17_Chr4g0065991 | 64.563 | 412 | 145 | 1 | 9 | 420 | 96 | 506 | 0.0 | 578 |
| Msa0134880 | MtrunA17_Chr4g0023331 | 64.964 | 411 | 143 | 1 | 10 | 420 | 4 | 413 | 0.0 | 575 |
| Msa0134880 | MtrunA17_Chr1g0205541 | 59.158 | 404 | 165 | 0 | 4 | 407 | 255 | 658 | 0.0 | 532 |
| Msa0134880 | MtrunA17_Chr3g0119641 | 53.957 | 417 | 189 | 2 | 10 | 423 | 312 | 728 | 1.98e-163 | 477 |
| Msa0134880 | MtrunA17_Chr3g0117081 | 32.506 | 403 | 253 | 10 | 12 | 407 | 346 | 736 | 1.32e-55 | 196 |
| Msa0134880 | MtrunA17_Chr5g0412801 | 32.010 | 403 | 259 | 7 | 10 | 407 | 316 | 708 | 8.01e-54 | 191 |
| Msa0134880 | MtrunA17_Chr8g0368011 | 32.000 | 225 | 140 | 5 | 10 | 231 | 353 | 567 | 1.77e-25 | 108 |
| Msa0134880 | MtrunA17_Chr8g0368021 | 38.281 | 128 | 78 | 1 | 281 | 407 | 27 | 154 | 7.54e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134880 | AT1G31690.1 | 65.783 | 415 | 140 | 2 | 12 | 424 | 262 | 676 | 0.0 | 595 |
| Msa0134880 | AT1G31710.1 | 66.102 | 413 | 137 | 2 | 12 | 421 | 265 | 677 | 0.0 | 589 |
| Msa0134880 | AT1G31670.1 | 63.942 | 416 | 130 | 5 | 12 | 424 | 342 | 740 | 0.0 | 556 |
| Msa0134880 | AT4G14940.1 | 57.494 | 407 | 169 | 2 | 5 | 407 | 243 | 649 | 2.03e-179 | 515 |
| Msa0134880 | AT4G12290.1 | 52.370 | 422 | 193 | 2 | 10 | 423 | 316 | 737 | 4.05e-161 | 472 |
| Msa0134880 | AT1G62810.1 | 52.736 | 402 | 186 | 3 | 12 | 409 | 294 | 695 | 9.04e-154 | 452 |
| Msa0134880 | AT3G43670.1 | 52.000 | 400 | 188 | 3 | 12 | 407 | 275 | 674 | 1.29e-149 | 441 |
| Msa0134880 | AT4G12290.2 | 51.404 | 356 | 165 | 2 | 10 | 357 | 316 | 671 | 4.07e-128 | 385 |
| Msa0134880 | AT4G12280.1 | 52.249 | 289 | 130 | 2 | 140 | 420 | 5 | 293 | 2.68e-108 | 322 |
| Msa0134880 | AT2G42490.1 | 31.671 | 401 | 259 | 7 | 12 | 407 | 353 | 743 | 6.29e-55 | 194 |
| Msa0134880 | AT4G12270.1 | 50.365 | 137 | 57 | 1 | 10 | 135 | 319 | 455 | 5.41e-42 | 154 |
Find 103 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCTTACTGGTATATT+AGG | 0.165498 | 1_3:+66442456 | Msa0134880:CDS |
| ATTGATGCTAAAGAAATTAT+TGG | 0.173562 | 1_3:-66441715 | None:intergenic |
| CACCTTTGTCAAGACAAATT+TGG | 0.177990 | 1_3:+66442620 | Msa0134880:CDS |
| TTTACTGATCAGATCAAATA+TGG | 0.179135 | 1_3:-66444107 | None:intergenic |
| TTAAAATAGGTTGGGCTTAC+TGG | 0.179307 | 1_3:+66442447 | Msa0134880:intron |
| ACAAAACAAGGAAATCAAAT+TGG | 0.202546 | 1_3:+66442786 | Msa0134880:CDS |
| TACTTTGATTGTGGTGAATA+TGG | 0.233955 | 1_3:+66441844 | Msa0134880:CDS |
| CTTTAGCAGTTTGGAGTCTA+AGG | 0.250428 | 1_3:+66442973 | Msa0134880:CDS |
| AGGATTCCTCTCAAAGAAAT+TGG | 0.255874 | 1_3:-66443932 | None:intergenic |
| TACTGGTATATTAGGGATTA+AGG | 0.267723 | 1_3:+66442464 | Msa0134880:CDS |
| AAAGAAATCACCACTTCATT+TGG | 0.267968 | 1_3:-66442042 | None:intergenic |
| CTTGAATGTCGAATCCTATA+TGG | 0.302111 | 1_3:-66441687 | None:intergenic |
| ATTGGGTACCGTTTGCTTCC+AGG | 0.303677 | 1_3:+66442804 | Msa0134880:CDS |
| TTCTTTGATTTGATCTGTAT+TGG | 0.307370 | 1_3:-66442499 | None:intergenic |
| AGAACAAGGATATTGTATTA+TGG | 0.321872 | 1_3:+66443824 | Msa0134880:CDS |
| ATCAGTTGGGCTGGGCCAAT+TGG | 0.322120 | 1_3:+66441659 | Msa0134880:CDS |
| AGCAAAAGTGGATGCACAAT+TGG | 0.336397 | 1_3:-66442828 | None:intergenic |
| TATCTTGACCTTGACATTGA+TGG | 0.340459 | 1_3:+66442588 | Msa0134880:CDS |
| CAACACCTAGGAAAAGTTAT+TGG | 0.348267 | 1_3:+66442667 | Msa0134880:CDS |
| TTGGGCTTACTGGTATATTA+GGG | 0.355547 | 1_3:+66442457 | Msa0134880:CDS |
| GTGATGATACTTTAGCAGTT+TGG | 0.361600 | 1_3:+66442964 | Msa0134880:CDS |
| ACTATGATTATGTTATAGAT+TGG | 0.378562 | 1_3:+66442201 | Msa0134880:CDS |
| AAAGCATTAGATATCTTAAC+AGG | 0.379099 | 1_3:-66441961 | None:intergenic |
| AATGTCAAGGTCAAGATAAT+AGG | 0.382154 | 1_3:-66442583 | None:intergenic |
| ACCATTCTTCACTTGGGTCT+TGG | 0.384600 | 1_3:-66441810 | None:intergenic |
| AAGAAATCACCACTTCATTT+GGG | 0.391853 | 1_3:-66442041 | None:intergenic |
| GATGATTATCCACAAATTAG+AGG | 0.394794 | 1_3:+66442855 | Msa0134880:CDS |
| CATACAACAAAACTGAGAAA+TGG | 0.397433 | 1_3:+66442910 | Msa0134880:CDS |
| GTGAATGCACCTCTAATTTG+TGG | 0.399902 | 1_3:-66442864 | None:intergenic |
| ATCCTTTGTATATTACTTCA+CGG | 0.403478 | 1_3:-66441762 | None:intergenic |
| ATTTCATCATGTTCCTTCTC+AGG | 0.409173 | 1_3:+66443858 | Msa0134880:CDS |
| CCACTCAACGTAGGCATGAC+TGG | 0.418913 | 1_3:-66443889 | None:intergenic |
| TCTTCACTTGGGTCTTGGTA+TGG | 0.419526 | 1_3:-66441805 | None:intergenic |
| TTGGGCCAATGCATAGGCTT+TGG | 0.427838 | 1_3:-66443973 | None:intergenic |
| GTGTAATACCATTCTTCACT+TGG | 0.433020 | 1_3:-66441817 | None:intergenic |
| GATTGTGGTGAATATGGCTT+TGG | 0.433096 | 1_3:+66441850 | Msa0134880:CDS |
| ATACAACAAAACTGAGAAAT+GGG | 0.441699 | 1_3:+66442911 | Msa0134880:CDS |
| TCCTATATGGAAAATCCAAT+TGG | 0.449771 | 1_3:-66441674 | None:intergenic |
| CAAGTGGTAGCATCAAGCTT+GGG | 0.452360 | 1_3:+66442234 | Msa0134880:CDS |
| TTTCTTTGATCAGTTGGGCT+GGG | 0.463506 | 1_3:+66441651 | Msa0134880:CDS |
| CTATGATTATGTTATAGATT+GGG | 0.467003 | 1_3:+66442202 | Msa0134880:CDS |
| TTACTGATCAGATCAAATAT+GGG | 0.471418 | 1_3:-66444106 | None:intergenic |
| CAAGATAATAGGTAAAGAAA+TGG | 0.475626 | 1_3:-66442572 | None:intergenic |
| GGATAGGGAGATTGAGAACA+AGG | 0.479632 | 1_3:+66443810 | Msa0134880:CDS |
| TAATCATCAGTTAGCAAAAG+TGG | 0.479949 | 1_3:-66442840 | None:intergenic |
| CAAAACAAGGAAATCAAATT+GGG | 0.482146 | 1_3:+66442787 | Msa0134880:CDS |
| AAGTTATTGGACTGTTGTAA+AGG | 0.495057 | 1_3:+66442680 | Msa0134880:CDS |
| ATTGTATTATGGCACACAAT+GGG | 0.500762 | 1_3:+66443835 | Msa0134880:CDS |
| GCAAAAGTGGATGCACAATT+GGG | 0.501386 | 1_3:-66442827 | None:intergenic |
| TTCCTCTCAAAGAAATTGGT+TGG | 0.505842 | 1_3:-66443928 | None:intergenic |
| AGTGGATGCACAATTGGGCC+TGG | 0.506196 | 1_3:-66442822 | None:intergenic |
| TACACAACCTACTTTGATTG+TGG | 0.507919 | 1_3:+66441835 | Msa0134880:CDS |
| ATTTGTCTTGACAAAGGTGT+TGG | 0.508980 | 1_3:-66442616 | None:intergenic |
| CAGTAAAATTTCTATGTGAC+TGG | 0.509166 | 1_3:+66444123 | Msa0134880:three_prime_UTR |
| GAATTGAATGTGTAGGGATA+GGG | 0.511193 | 1_3:+66443795 | Msa0134880:intron |
| TGTAATACCATTCTTCACTT+GGG | 0.512744 | 1_3:-66441816 | None:intergenic |
| GGTATATTAGGGATTAAGGC+AGG | 0.513268 | 1_3:+66442468 | Msa0134880:CDS |
| GACCAACCAATTTCTTTGAG+AGG | 0.513325 | 1_3:+66443926 | Msa0134880:CDS |
| ACCAAGACCCAAGTGAAGAA+TGG | 0.525685 | 1_3:+66441809 | Msa0134880:CDS |
| CCAAGTGGTAGCATCAAGCT+TGG | 0.529898 | 1_3:+66442233 | Msa0134880:CDS |
| TGTAAGCTTAATAGTGAGAT+CGG | 0.543713 | 1_3:+66442163 | Msa0134880:CDS |
| CATTCACTAATTATAATGTG+TGG | 0.543852 | 1_3:+66442880 | Msa0134880:CDS |
| GTGAGATCGGTTTCAACTGT+GGG | 0.550438 | 1_3:+66442176 | Msa0134880:CDS |
| TCTAGGAAGACAGCATTGGC+AGG | 0.552138 | 1_3:-66441910 | None:intergenic |
| CCAGTCATGCCTACGTTGAG+TGG | 0.556192 | 1_3:+66443889 | Msa0134880:CDS |
| TAATGTTGAAAAGTGCAGTT+GGG | 0.556487 | 1_3:-66443991 | None:intergenic |
| CTCCAAATTTGTCTTGACAA+AGG | 0.561847 | 1_3:-66442622 | None:intergenic |
| CTAATGTTGAAAAGTGCAGT+TGG | 0.562794 | 1_3:-66443992 | None:intergenic |
| GTGCAGTTGGGCCAATGCAT+AGG | 0.562944 | 1_3:-66443979 | None:intergenic |
| TTGCTAGCTGATAACACCAT+TGG | 0.576690 | 1_3:+66442537 | Msa0134880:CDS |
| AACAAAACTGAGAAATGGGC+AGG | 0.581483 | 1_3:+66442915 | Msa0134880:CDS |
| ACTGGATAATCTTCCTGAGA+AGG | 0.584969 | 1_3:-66443871 | None:intergenic |
| TAAGCCTTCTGAGTTACTAG+TGG | 0.586124 | 1_3:+66442746 | Msa0134880:CDS |
| CAAATCAAAGAAGACATACA+TGG | 0.588282 | 1_3:+66442510 | Msa0134880:CDS |
| GTCATGCCTACGTTGAGTGG+TGG | 0.588484 | 1_3:+66443892 | Msa0134880:CDS |
| TGTGGCAGATAACTGAGGTC+AGG | 0.588686 | 1_3:+66442135 | Msa0134880:intron |
| CCAAGCTTGATGCTACCACT+TGG | 0.590234 | 1_3:-66442233 | None:intergenic |
| TATTGTATTATGGCACACAA+TGG | 0.591427 | 1_3:+66443834 | Msa0134880:CDS |
| ATATTCACCACAATCAAAGT+AGG | 0.591448 | 1_3:-66441842 | None:intergenic |
| AAGCAGAATAGTATGCGTCT+AGG | 0.592646 | 1_3:-66441927 | None:intergenic |
| AATTGCAATCCCAAATGAAG+TGG | 0.594960 | 1_3:+66442032 | Msa0134880:CDS |
| AATCACCAAAGCCTATGCAT+TGG | 0.596584 | 1_3:+66443968 | Msa0134880:CDS |
| ATTCACTAATTATAATGTGT+GGG | 0.598904 | 1_3:+66442881 | Msa0134880:CDS |
| TGCGTCTAGGAAGACAGCAT+TGG | 0.603158 | 1_3:-66441914 | None:intergenic |
| ATAGGATTCGACATTCAAGT+TGG | 0.603509 | 1_3:+66441691 | Msa0134880:CDS |
| CAATTGGGCCTGGAAGCAAA+CGG | 0.613823 | 1_3:-66442812 | None:intergenic |
| GATTGGGAGTTTAAGCCAAG+TGG | 0.613885 | 1_3:+66442218 | Msa0134880:CDS |
| TACCGTGAAGTAATATACAA+AGG | 0.620347 | 1_3:+66441760 | Msa0134880:CDS |
| TTGGCAGGACAATCTGTGAA+AGG | 0.622053 | 1_3:-66441895 | None:intergenic |
| AAGTGGTAGCATCAAGCTTG+GGG | 0.623421 | 1_3:+66442235 | Msa0134880:CDS |
| GCATACTATTCTGCTTCAGA+TGG | 0.624085 | 1_3:+66441934 | Msa0134880:CDS |
| TGGCTTCACCATCAATGTCA+AGG | 0.628699 | 1_3:-66442596 | None:intergenic |
| GCTGATGCAAGAGTCAACAT+TGG | 0.634134 | 1_3:+66442720 | Msa0134880:CDS |
| TTTACCACTAGTAACTCAGA+AGG | 0.641809 | 1_3:-66442750 | None:intergenic |
| GTATATTAGGGATTAAGGCA+GGG | 0.645710 | 1_3:+66442469 | Msa0134880:CDS |
| AGTGAGATCGGTTTCAACTG+TGG | 0.648718 | 1_3:+66442175 | Msa0134880:CDS |
| AAAACTGAGAAATGGGCAGG+AGG | 0.656721 | 1_3:+66442918 | Msa0134880:CDS |
| TGAAAGATCAAACAACACCT+AGG | 0.665228 | 1_3:+66442655 | Msa0134880:CDS |
| TTATATGTTGATCATAGCAG+AGG | 0.670339 | 1_3:+66442942 | Msa0134880:CDS |
| AGTATGCAGGTGATATCATG+TGG | 0.673354 | 1_3:+66441998 | Msa0134880:CDS |
| ATGGTCATGATAGACACCAA+TGG | 0.677878 | 1_3:-66442553 | None:intergenic |
| TCAAATCCACCACTCAACGT+AGG | 0.724526 | 1_3:-66443898 | None:intergenic |
| TTGTGTGTGGCAGATAACTG+AGG | 0.795071 | 1_3:+66442130 | Msa0134880:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTACGTAATAATATATTAAT+CGG | + | chr1_3:66443186-66443205 | Msa0134880:intron | 15.0% |
| !! | TGTTCTCATTAAAAATTATA+AGG | + | chr1_3:66444020-66444039 | Msa0134880:three_prime_UTR | 15.0% |
| !! | ATTGATGCTAAAGAAATTAT+TGG | - | chr1_3:66441718-66441737 | None:intergenic | 20.0% |
| !! | ACTATGATTATGTTATAGAT+TGG | + | chr1_3:66442201-66442220 | Msa0134880:CDS | 20.0% |
| !! | CTATGATTATGTTATAGATT+GGG | + | chr1_3:66442202-66442221 | Msa0134880:CDS | 20.0% |
| !! | TATATATGGCATAAAACATT+TGG | - | chr1_3:66442275-66442294 | None:intergenic | 20.0% |
| !!! | TTTGTTTCTTTAATCAAACT+TGG | + | chr1_3:66442317-66442336 | Msa0134880:intron | 20.0% |
| !! | AACAACTAATTACAAACTTA+TGG | - | chr1_3:66442398-66442417 | None:intergenic | 20.0% |
| !!! | TGCATGCTATATTTTAAAAT+AGG | + | chr1_3:66442434-66442453 | Msa0134880:intron | 20.0% |
| !!! | TGCTATATTTTAAAATAGGT+TGG | + | chr1_3:66442438-66442457 | Msa0134880:intron | 20.0% |
| !!! | GCTATATTTTAAAATAGGTT+GGG | + | chr1_3:66442439-66442458 | Msa0134880:intron | 20.0% |
| !!! | CCTTGTTTTGTTTTTTTATT+AGG | - | chr1_3:66442777-66442796 | None:intergenic | 20.0% |
| !! | CCTAATAAAAAAACAAAACA+AGG | + | chr1_3:66442774-66442793 | Msa0134880:CDS | 20.0% |
| !! | ATTCACTAATTATAATGTGT+GGG | + | chr1_3:66442881-66442900 | Msa0134880:CDS | 20.0% |
| !! | TAGCAAATTATATGATTTCA+AGG | - | chr1_3:66443271-66443290 | None:intergenic | 20.0% |
| !!! | TGAAATCATATAATTTGCTA+AGG | + | chr1_3:66443271-66443290 | Msa0134880:intron | 20.0% |
| !! | AATTCAAACTAATGAGAATT+GGG | - | chr1_3:66443549-66443568 | None:intergenic | 20.0% |
| !! | TAATTCAAACTAATGAGAAT+TGG | - | chr1_3:66443550-66443569 | None:intergenic | 20.0% |
| !!! | AATCTATGTAATTTTCTCAA+GGG | + | chr1_3:66444057-66444076 | Msa0134880:three_prime_UTR | 20.0% |
| !! | ACAATTTTCTTTGATCAGTT+GGG | + | chr1_3:66441646-66441665 | Msa0134880:CDS | 25.0% |
| ! | ATCCTTTGTATATTACTTCA+CGG | - | chr1_3:66441765-66441784 | None:intergenic | 25.0% |
| !! | AAAGCATTAGATATCTTAAC+AGG | - | chr1_3:66441964-66441983 | None:intergenic | 25.0% |
| ! | ATTTCAAGCATGACTATATA+TGG | - | chr1_3:66442289-66442308 | None:intergenic | 25.0% |
| ! | ATATAGTCATGCTTGAAATT+TGG | + | chr1_3:66442290-66442309 | Msa0134880:intron | 25.0% |
| !!! | TTCTTTGATTTGATCTGTAT+TGG | - | chr1_3:66442502-66442521 | None:intergenic | 25.0% |
| ! | CAAGATAATAGGTAAAGAAA+TGG | - | chr1_3:66442575-66442594 | None:intergenic | 25.0% |
| ! | ACAAAACAAGGAAATCAAAT+TGG | + | chr1_3:66442786-66442805 | Msa0134880:CDS | 25.0% |
| ! | CAAAACAAGGAAATCAAATT+GGG | + | chr1_3:66442787-66442806 | Msa0134880:CDS | 25.0% |
| ! | CATTCACTAATTATAATGTG+TGG | + | chr1_3:66442880-66442899 | Msa0134880:CDS | 25.0% |
| ! | ATACAACAAAACTGAGAAAT+GGG | + | chr1_3:66442911-66442930 | Msa0134880:CDS | 25.0% |
| ! | ATGTTGTAGGCTTATTTATA+AGG | - | chr1_3:66443447-66443466 | None:intergenic | 25.0% |
| ! | TTATAAATAAGCCTACAACA+TGG | + | chr1_3:66443446-66443465 | Msa0134880:intron | 25.0% |
| !! | GTGAGAAATTGTTAATGTTT+TGG | + | chr1_3:66443761-66443780 | Msa0134880:intron | 25.0% |
| ! | ATGAATTGAATTGAATGTGT+AGG | + | chr1_3:66443788-66443807 | Msa0134880:intron | 25.0% |
| ! | TGAATTGAATTGAATGTGTA+GGG | + | chr1_3:66443789-66443808 | Msa0134880:intron | 25.0% |
| ! | AGAACAAGGATATTGTATTA+TGG | + | chr1_3:66443824-66443843 | Msa0134880:CDS | 25.0% |
| !! | CAATCTATGTAATTTTCTCA+AGG | + | chr1_3:66444056-66444075 | Msa0134880:three_prime_UTR | 25.0% |
| ! | TTACTGATCAGATCAAATAT+GGG | - | chr1_3:66444109-66444128 | None:intergenic | 25.0% |
| ! | TTTACTGATCAGATCAAATA+TGG | - | chr1_3:66444110-66444129 | None:intergenic | 25.0% |
| ! | GACAATTTTCTTTGATCAGT+TGG | + | chr1_3:66441645-66441664 | Msa0134880:CDS | 30.0% |
| TCCTATATGGAAAATCCAAT+TGG | - | chr1_3:66441677-66441696 | None:intergenic | 30.0% | |
| TACCGTGAAGTAATATACAA+AGG | + | chr1_3:66441760-66441779 | Msa0134880:CDS | 30.0% | |
| TGTAATACCATTCTTCACTT+GGG | - | chr1_3:66441819-66441838 | None:intergenic | 30.0% | |
| ATATTCACCACAATCAAAGT+AGG | - | chr1_3:66441845-66441864 | None:intergenic | 30.0% | |
| TACTTTGATTGTGGTGAATA+TGG | + | chr1_3:66441844-66441863 | Msa0134880:CDS | 30.0% | |
| AAGAAATCACCACTTCATTT+GGG | - | chr1_3:66442044-66442063 | None:intergenic | 30.0% | |
| AAAGAAATCACCACTTCATT+TGG | - | chr1_3:66442045-66442064 | None:intergenic | 30.0% | |
| ! | TTATGACTATTGATTGTGTG+TGG | + | chr1_3:66442117-66442136 | Msa0134880:intron | 30.0% |
| TGTAAGCTTAATAGTGAGAT+CGG | + | chr1_3:66442163-66442182 | Msa0134880:CDS | 30.0% | |
| TACTGGTATATTAGGGATTA+AGG | + | chr1_3:66442464-66442483 | Msa0134880:CDS | 30.0% | |
| CAAATCAAAGAAGACATACA+TGG | + | chr1_3:66442510-66442529 | Msa0134880:CDS | 30.0% | |
| AATGTCAAGGTCAAGATAAT+AGG | - | chr1_3:66442586-66442605 | None:intergenic | 30.0% | |
| AAGTTATTGGACTGTTGTAA+AGG | + | chr1_3:66442680-66442699 | Msa0134880:CDS | 30.0% | |
| TAATCATCAGTTAGCAAAAG+TGG | - | chr1_3:66442843-66442862 | None:intergenic | 30.0% | |
| GATGATTATCCACAAATTAG+AGG | + | chr1_3:66442855-66442874 | Msa0134880:CDS | 30.0% | |
| !!! | CATTTCTCAGTTTTGTTGTA+TGG | - | chr1_3:66442912-66442931 | None:intergenic | 30.0% |
| CATACAACAAAACTGAGAAA+TGG | + | chr1_3:66442910-66442929 | Msa0134880:CDS | 30.0% | |
| TTATATGTTGATCATAGCAG+AGG | + | chr1_3:66442942-66442961 | Msa0134880:CDS | 30.0% | |
| ! | AAGGTGAGTCCATTAAATTT+TGG | + | chr1_3:66442992-66443011 | Msa0134880:intron | 30.0% |
| TGAGCAAAGCCAAAATTTAA+TGG | - | chr1_3:66443004-66443023 | None:intergenic | 30.0% | |
| !! | TTATTTTGTGACCATGTTGT+AGG | - | chr1_3:66443460-66443479 | None:intergenic | 30.0% |
| TTTCAATGCATAAAGCAAAG+AGG | - | chr1_3:66443489-66443508 | None:intergenic | 30.0% | |
| CTTTGCTTTATGCATTGAAA+CGG | + | chr1_3:66443489-66443508 | Msa0134880:intron | 30.0% | |
| !! | TTTCTTTTTCATCGCTATGA+CGG | + | chr1_3:66443587-66443606 | Msa0134880:intron | 30.0% |
| TATTGTATTATGGCACACAA+TGG | + | chr1_3:66443834-66443853 | Msa0134880:CDS | 30.0% | |
| ATTGTATTATGGCACACAAT+GGG | + | chr1_3:66443835-66443854 | Msa0134880:CDS | 30.0% | |
| !!! | GGTGATTTTGTTTTAAGAAC+AGG | - | chr1_3:66443955-66443974 | None:intergenic | 30.0% |
| ! | TAATGTTGAAAAGTGCAGTT+GGG | - | chr1_3:66443994-66444013 | None:intergenic | 30.0% |
| CAGTAAAATTTCTATGTGAC+TGG | + | chr1_3:66444123-66444142 | Msa0134880:three_prime_UTR | 30.0% | |
| ! | GCCAATTGGATTTTCCATAT+AGG | + | chr1_3:66441673-66441692 | Msa0134880:CDS | 35.0% |
| CTTGAATGTCGAATCCTATA+TGG | - | chr1_3:66441690-66441709 | None:intergenic | 35.0% | |
| ATAGGATTCGACATTCAAGT+TGG | + | chr1_3:66441691-66441710 | Msa0134880:CDS | 35.0% | |
| GTGTAATACCATTCTTCACT+TGG | - | chr1_3:66441820-66441839 | None:intergenic | 35.0% | |
| TACACAACCTACTTTGATTG+TGG | + | chr1_3:66441835-66441854 | Msa0134880:CDS | 35.0% | |
| !! | TGCATTTTTGAGAAGTATGC+AGG | + | chr1_3:66441985-66442004 | Msa0134880:CDS | 35.0% |
| AATTGCAATCCCAAATGAAG+TGG | + | chr1_3:66442032-66442051 | Msa0134880:CDS | 35.0% | |
| ! | TTAAAATAGGTTGGGCTTAC+TGG | + | chr1_3:66442447-66442466 | Msa0134880:intron | 35.0% |
| TTGGGCTTACTGGTATATTA+GGG | + | chr1_3:66442457-66442476 | Msa0134880:CDS | 35.0% | |
| GTATATTAGGGATTAAGGCA+GGG | + | chr1_3:66442469-66442488 | Msa0134880:CDS | 35.0% | |
| TATCTTGACCTTGACATTGA+TGG | + | chr1_3:66442588-66442607 | Msa0134880:CDS | 35.0% | |
| ! | ATTTGTCTTGACAAAGGTGT+TGG | - | chr1_3:66442619-66442638 | None:intergenic | 35.0% |
| CACCTTTGTCAAGACAAATT+TGG | + | chr1_3:66442620-66442639 | Msa0134880:CDS | 35.0% | |
| CTCCAAATTTGTCTTGACAA+AGG | - | chr1_3:66442625-66442644 | None:intergenic | 35.0% | |
| TGAAAGATCAAACAACACCT+AGG | + | chr1_3:66442655-66442674 | Msa0134880:CDS | 35.0% | |
| CAACACCTAGGAAAAGTTAT+TGG | + | chr1_3:66442667-66442686 | Msa0134880:CDS | 35.0% | |
| ! | ACAGTCCAATAACTTTTCCT+AGG | - | chr1_3:66442675-66442694 | None:intergenic | 35.0% |
| TTTACCACTAGTAACTCAGA+AGG | - | chr1_3:66442753-66442772 | None:intergenic | 35.0% | |
| GTGATGATACTTTAGCAGTT+TGG | + | chr1_3:66442964-66442983 | Msa0134880:CDS | 35.0% | |
| ACATAATTCGTAGTTCGCTT+TGG | + | chr1_3:66443071-66443090 | Msa0134880:intron | 35.0% | |
| !!! | GCTGCATTTTTTCTACTTGT+GGG | - | chr1_3:66443342-66443361 | None:intergenic | 35.0% |
| !!! | AGCTGCATTTTTTCTACTTG+TGG | - | chr1_3:66443343-66443362 | None:intergenic | 35.0% |
| AATGCATAAAGCAAAGAGGT+TGG | - | chr1_3:66443485-66443504 | None:intergenic | 35.0% | |
| AAAAGTTCCATTCCCAATAC+TGG | - | chr1_3:66443521-66443540 | None:intergenic | 35.0% | |
| AGAGAGAATTATGAGAGAAC+CGG | + | chr1_3:66443641-66443660 | Msa0134880:intron | 35.0% | |
| CCTAATTCGCTCAATTACTA+GGG | - | chr1_3:66443713-66443732 | None:intergenic | 35.0% | |
| ACCTAATTCGCTCAATTACT+AGG | - | chr1_3:66443714-66443733 | None:intergenic | 35.0% | |
| TGAATTGAATGTGTAGGGAT+AGG | + | chr1_3:66443794-66443813 | Msa0134880:intron | 35.0% | |
| GAATTGAATGTGTAGGGATA+GGG | + | chr1_3:66443795-66443814 | Msa0134880:intron | 35.0% | |
| ATTTCATCATGTTCCTTCTC+AGG | + | chr1_3:66443858-66443877 | Msa0134880:CDS | 35.0% | |
| TTCCTCTCAAAGAAATTGGT+TGG | - | chr1_3:66443931-66443950 | None:intergenic | 35.0% | |
| AGGATTCCTCTCAAAGAAAT+TGG | - | chr1_3:66443935-66443954 | None:intergenic | 35.0% | |
| ! | CTAATGTTGAAAAGTGCAGT+TGG | - | chr1_3:66443995-66444014 | None:intergenic | 35.0% |
| ! | TTTTCTTTGATCAGTTGGGC+TGG | + | chr1_3:66441650-66441669 | Msa0134880:CDS | 40.0% |
| TTTCTTTGATCAGTTGGGCT+GGG | + | chr1_3:66441651-66441670 | Msa0134880:CDS | 40.0% | |
| GATTGTGGTGAATATGGCTT+TGG | + | chr1_3:66441850-66441869 | Msa0134880:CDS | 40.0% | |
| AAGCAGAATAGTATGCGTCT+AGG | - | chr1_3:66441930-66441949 | None:intergenic | 40.0% | |
| GCATACTATTCTGCTTCAGA+TGG | + | chr1_3:66441934-66441953 | Msa0134880:CDS | 40.0% | |
| AGTATGCAGGTGATATCATG+TGG | + | chr1_3:66441998-66442017 | Msa0134880:CDS | 40.0% | |
| GTTGGGCTTACTGGTATATT+AGG | + | chr1_3:66442456-66442475 | Msa0134880:CDS | 40.0% | |
| GGTATATTAGGGATTAAGGC+AGG | + | chr1_3:66442468-66442487 | Msa0134880:CDS | 40.0% | |
| TTGCTAGCTGATAACACCAT+TGG | + | chr1_3:66442537-66442556 | Msa0134880:CDS | 40.0% | |
| ATGGTCATGATAGACACCAA+TGG | - | chr1_3:66442556-66442575 | None:intergenic | 40.0% | |
| TAAGCCTTCTGAGTTACTAG+TGG | + | chr1_3:66442746-66442765 | Msa0134880:CDS | 40.0% | |
| GCAAAAGTGGATGCACAATT+GGG | - | chr1_3:66442830-66442849 | None:intergenic | 40.0% | |
| AGCAAAAGTGGATGCACAAT+TGG | - | chr1_3:66442831-66442850 | None:intergenic | 40.0% | |
| GTGAATGCACCTCTAATTTG+TGG | - | chr1_3:66442867-66442886 | None:intergenic | 40.0% | |
| AACAAAACTGAGAAATGGGC+AGG | + | chr1_3:66442915-66442934 | Msa0134880:CDS | 40.0% | |
| ! | CTTTAGCAGTTTGGAGTCTA+AGG | + | chr1_3:66442973-66442992 | Msa0134880:CDS | 40.0% |
| TACGCGACTTGAGAAGAATT+CGG | + | chr1_3:66443120-66443139 | Msa0134880:intron | 40.0% | |
| AAGAGCTAATAGTCCCACAT+CGG | + | chr1_3:66443392-66443411 | Msa0134880:intron | 40.0% | |
| GCAAGTAAAACTTCCGATGT+GGG | - | chr1_3:66443408-66443427 | None:intergenic | 40.0% | |
| TGCAAGTAAAACTTCCGATG+TGG | - | chr1_3:66443409-66443428 | None:intergenic | 40.0% | |
| TGCTTTATGCATTGAAACGG+TGG | + | chr1_3:66443492-66443511 | Msa0134880:intron | 40.0% | |
| GCTTTATGCATTGAAACGGT+GGG | + | chr1_3:66443493-66443512 | Msa0134880:intron | 40.0% | |
| CTTTATGCATTGAAACGGTG+GGG | + | chr1_3:66443494-66443513 | Msa0134880:intron | 40.0% | |
| CTCTGAATTCGCAAAAACCA+AGG | - | chr1_3:66443625-66443644 | None:intergenic | 40.0% | |
| GAGAGAATTATGAGAGAACC+GGG | + | chr1_3:66443642-66443661 | Msa0134880:intron | 40.0% | |
| CCCTAGTAATTGAGCGAATT+AGG | + | chr1_3:66443710-66443729 | Msa0134880:intron | 40.0% | |
| ACTGGATAATCTTCCTGAGA+AGG | - | chr1_3:66443874-66443893 | None:intergenic | 40.0% | |
| GACCAACCAATTTCTTTGAG+AGG | + | chr1_3:66443926-66443945 | Msa0134880:CDS | 40.0% | |
| AATCACCAAAGCCTATGCAT+TGG | + | chr1_3:66443968-66443987 | Msa0134880:CDS | 40.0% | |
| TCTTCACTTGGGTCTTGGTA+TGG | - | chr1_3:66441808-66441827 | None:intergenic | 45.0% | |
| ACCAAGACCCAAGTGAAGAA+TGG | + | chr1_3:66441809-66441828 | Msa0134880:CDS | 45.0% | |
| ACCATTCTTCACTTGGGTCT+TGG | - | chr1_3:66441813-66441832 | None:intergenic | 45.0% | |
| TTGGCAGGACAATCTGTGAA+AGG | - | chr1_3:66441898-66441917 | None:intergenic | 45.0% | |
| TTGTGTGTGGCAGATAACTG+AGG | + | chr1_3:66442130-66442149 | Msa0134880:intron | 45.0% | |
| ! | AGTGAGATCGGTTTCAACTG+TGG | + | chr1_3:66442175-66442194 | Msa0134880:CDS | 45.0% |
| ! | GTGAGATCGGTTTCAACTGT+GGG | + | chr1_3:66442176-66442195 | Msa0134880:CDS | 45.0% |
| GATTGGGAGTTTAAGCCAAG+TGG | + | chr1_3:66442218-66442237 | Msa0134880:CDS | 45.0% | |
| CAAGTGGTAGCATCAAGCTT+GGG | + | chr1_3:66442234-66442253 | Msa0134880:CDS | 45.0% | |
| AAGTGGTAGCATCAAGCTTG+GGG | + | chr1_3:66442235-66442254 | Msa0134880:CDS | 45.0% | |
| TGGCTTCACCATCAATGTCA+AGG | - | chr1_3:66442599-66442618 | None:intergenic | 45.0% | |
| GCTGATGCAAGAGTCAACAT+TGG | + | chr1_3:66442720-66442739 | Msa0134880:CDS | 45.0% | |
| AAAACTGAGAAATGGGCAGG+AGG | + | chr1_3:66442918-66442937 | Msa0134880:CDS | 45.0% | |
| TGAGAAGAATTCGGTACGTC+TGG | + | chr1_3:66443129-66443148 | Msa0134880:intron | 45.0% | |
| GAGAAGAATTCGGTACGTCT+GGG | + | chr1_3:66443130-66443149 | Msa0134880:intron | 45.0% | |
| AGAAGAATTCGGTACGTCTG+GGG | + | chr1_3:66443131-66443150 | Msa0134880:intron | 45.0% | |
| GGATAGGGAGATTGAGAACA+AGG | + | chr1_3:66443810-66443829 | Msa0134880:CDS | 45.0% | |
| TCAAATCCACCACTCAACGT+AGG | - | chr1_3:66443901-66443920 | None:intergenic | 45.0% | |
| !! | TCTAGGAAGACAGCATTGGC+AGG | - | chr1_3:66441913-66441932 | None:intergenic | 50.0% |
| TGCGTCTAGGAAGACAGCAT+TGG | - | chr1_3:66441917-66441936 | None:intergenic | 50.0% | |
| TGTGGCAGATAACTGAGGTC+AGG | + | chr1_3:66442135-66442154 | Msa0134880:intron | 50.0% | |
| CCAAGCTTGATGCTACCACT+TGG | - | chr1_3:66442236-66442255 | None:intergenic | 50.0% | |
| CCAAGTGGTAGCATCAAGCT+TGG | + | chr1_3:66442233-66442252 | Msa0134880:CDS | 50.0% | |
| GTAGCATCAAGCTTGGGGTA+TGG | + | chr1_3:66442240-66442259 | Msa0134880:intron | 50.0% | |
| ! | ATTGGGTACCGTTTGCTTCC+AGG | + | chr1_3:66442804-66442823 | Msa0134880:CDS | 50.0% |
| CAATTGGGCCTGGAAGCAAA+CGG | - | chr1_3:66442815-66442834 | None:intergenic | 50.0% | |
| TCGTAGTTCGCTTTGGTACG+TGG | + | chr1_3:66443078-66443097 | Msa0134880:intron | 50.0% | |
| GTTCGCTTTGGTACGTGGTA+CGG | + | chr1_3:66443083-66443102 | Msa0134880:intron | 50.0% | |
| TTCGCTTTGGTACGTGGTAC+GGG | + | chr1_3:66443084-66443103 | Msa0134880:intron | 50.0% | |
| TTTGGTACGTGGTACGGGTA+CGG | + | chr1_3:66443089-66443108 | Msa0134880:intron | 50.0% | |
| GAAGAATTCGGTACGTCTGG+GGG | + | chr1_3:66443132-66443151 | Msa0134880:intron | 50.0% | |
| TAGAGCTTCGGTACGCTGTT+CGG | + | chr1_3:66443157-66443176 | Msa0134880:intron | 50.0% | |
| AAACGGTGGGGTCCAGTATT+GGG | + | chr1_3:66443506-66443525 | Msa0134880:intron | 50.0% | |
| ATCGCTATGACGGTACGCTT+TGG | + | chr1_3:66443597-66443616 | Msa0134880:intron | 50.0% | |
| ATTACTAGGGAACCGCGAAC+CGG | - | chr1_3:66443700-66443719 | None:intergenic | 50.0% | |
| TTGGGCCAATGCATAGGCTT+TGG | - | chr1_3:66443976-66443995 | None:intergenic | 50.0% | |
| ! | ATCAGTTGGGCTGGGCCAAT+TGG | + | chr1_3:66441659-66441678 | Msa0134880:CDS | 55.0% |
| AGTGGATGCACAATTGGGCC+TGG | - | chr1_3:66442825-66442844 | None:intergenic | 55.0% | |
| TTGGTACGTGGTACGGGTAC+GGG | + | chr1_3:66443090-66443109 | Msa0134880:intron | 55.0% | |
| ! | CGTCTGGGGGTATAGAGCTT+CGG | + | chr1_3:66443145-66443164 | Msa0134880:intron | 55.0% |
| GAAACGGTGGGGTCCAGTAT+TGG | + | chr1_3:66443505-66443524 | Msa0134880:intron | 55.0% | |
| ! | GTGGGGTCCAGTATTGGGAA+TGG | + | chr1_3:66443511-66443530 | Msa0134880:intron | 55.0% |
| GACGGTACGCTTTGGTACCT+TGG | + | chr1_3:66443605-66443624 | Msa0134880:intron | 55.0% | |
| ! | TTCGCGGTACTTTGGAGACC+CGG | - | chr1_3:66443663-66443682 | None:intergenic | 55.0% |
| !! | GTCTCCAAAGTACCGCGAAC+CGG | + | chr1_3:66443664-66443683 | Msa0134880:intron | 55.0% |
| TTACTAGGGAACCGCGAACC+GGG | - | chr1_3:66443699-66443718 | None:intergenic | 55.0% | |
| CCACTCAACGTAGGCATGAC+TGG | - | chr1_3:66443892-66443911 | None:intergenic | 55.0% | |
| CCAGTCATGCCTACGTTGAG+TGG | + | chr1_3:66443889-66443908 | Msa0134880:CDS | 55.0% | |
| GTCATGCCTACGTTGAGTGG+TGG | + | chr1_3:66443892-66443911 | Msa0134880:CDS | 55.0% | |
| GTGCAGTTGGGCCAATGCAT+AGG | - | chr1_3:66443982-66444001 | None:intergenic | 55.0% | |
| ! | TCGGTACGCTGTTCGGTTCG+TGG | + | chr1_3:66443164-66443183 | Msa0134880:intron | 60.0% |
| !! | CGAACCGGTTCGCGGTACTT+TGG | - | chr1_3:66443671-66443690 | None:intergenic | 60.0% |
| GTGGTACGGGTACGGGTACG+CGG | + | chr1_3:66443097-66443116 | Msa0134880:intron | 65.0% | |
| AGGGAACCGCGAACCGGGAT+CGG | - | chr1_3:66443694-66443713 | None:intergenic | 65.0% | |
| !! | GGGATCGGCGAACCGGTTCG+CGG | - | chr1_3:66443679-66443698 | None:intergenic | 70.0% |
| !! | GCGAACCGGTTCGCCGATCC+CGG | + | chr1_3:66443678-66443697 | Msa0134880:intron | 70.0% |
| GCGAACCGGGATCGGCGAAC+CGG | - | chr1_3:66443686-66443705 | None:intergenic | 70.0% | |
| ! | GGTTCGCCGATCCCGGTTCG+CGG | + | chr1_3:66443685-66443704 | Msa0134880:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66441637 | 66444160 | 66441637 | ID=Msa0134880;Name=Msa0134880 |
| chr1_3 | mRNA | 66441637 | 66444160 | 66441637 | ID=Msa0134880-mRNA-1;Parent=Msa0134880;Name=Msa0134880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.66|0.25|1|1|1|4|146|424 |
| chr1_3 | exon | 66441637 | 66442053 | 66441637 | ID=Msa0134880-mRNA-1:exon:22656;Parent=Msa0134880-mRNA-1 |
| chr1_3 | exon | 66442143 | 66442256 | 66442143 | ID=Msa0134880-mRNA-1:exon:22657;Parent=Msa0134880-mRNA-1 |
| chr1_3 | exon | 66442456 | 66442994 | 66442456 | ID=Msa0134880-mRNA-1:exon:22658;Parent=Msa0134880-mRNA-1 |
| chr1_3 | exon | 66443810 | 66444160 | 66443810 | ID=Msa0134880-mRNA-1:exon:22659;Parent=Msa0134880-mRNA-1 |
| chr1_3 | CDS | 66441637 | 66442053 | 66441637 | ID=Msa0134880-mRNA-1:cds;Parent=Msa0134880-mRNA-1 |
| chr1_3 | CDS | 66442143 | 66442256 | 66442143 | ID=Msa0134880-mRNA-1:cds;Parent=Msa0134880-mRNA-1 |
| chr1_3 | CDS | 66442456 | 66442994 | 66442456 | ID=Msa0134880-mRNA-1:cds;Parent=Msa0134880-mRNA-1 |
| chr1_3 | CDS | 66443810 | 66444014 | 66443810 | ID=Msa0134880-mRNA-1:cds;Parent=Msa0134880-mRNA-1 |
| chr1_3 | three_prime_UTR | 66444015 | 66444160 | 66444015 | ID=Msa0134880-mRNA-1:three_prime_utr;Parent=Msa0134880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
