Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179700 | XP_003592404.1 | 89.497 | 676 | 21 | 4 | 1 | 629 | 3 | 675 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179700 | sp|Q43077|AMO_PEA | 52.593 | 675 | 263 | 7 | 1 | 626 | 7 | 673 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179700 | G7ID65 | 89.497 | 676 | 21 | 4 | 1 | 629 | 3 | 675 | 0.0 | 1231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0179700 | 0.808328 | 3.269768e-50 | -8.615850e-47 |
| Msa0088460 | Msa0179700 | 0.910239 | 2.339890e-82 | -8.615850e-47 |
| Msa0134780 | Msa0179700 | 0.888296 | 6.695217e-73 | -8.615850e-47 |
| Msa0134880 | Msa0179700 | 0.867503 | 1.304244e-65 | -8.615850e-47 |
| Msa0179700 | Msa0354840 | 0.805414 | 1.350427e-49 | -8.615850e-47 |
| Msa0179700 | Msa0401970 | 0.815502 | 8.944082e-52 | -8.615850e-47 |
| Msa0179700 | Msa0682770 | 0.802899 | 4.507181e-49 | -8.615850e-47 |
| Msa0179700 | Msa0685060 | 0.805491 | 1.301442e-49 | -8.615850e-47 |
| Msa0179700 | Msa1031410 | 0.806217 | 9.157854e-50 | -8.615850e-47 |
| Msa0179700 | Msa1214310 | 0.819955 | 8.848244e-53 | -8.615850e-47 |
| Msa0179700 | Msa1300420 | 0.801308 | 9.573161e-49 | -8.615850e-47 |
| Msa0179700 | Msa1321060 | 0.801618 | 8.272026e-49 | -8.615850e-47 |
| Msa0179700 | Msa1433360 | 0.801075 | 1.068545e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179700 | MtrunA17_Chr1g0205571 | 89.497 | 676 | 21 | 4 | 1 | 629 | 3 | 675 | 0.0 | 1231 |
| Msa0179700 | MtrunA17_Chr4g0065981 | 52.148 | 675 | 267 | 7 | 1 | 626 | 7 | 674 | 0.0 | 726 |
| Msa0179700 | MtrunA17_Chr4g0065961 | 52.437 | 677 | 261 | 8 | 1 | 626 | 1 | 667 | 0.0 | 702 |
| Msa0179700 | MtrunA17_Chr1g0205541 | 48.855 | 655 | 274 | 6 | 5 | 612 | 18 | 658 | 0.0 | 666 |
| Msa0179700 | MtrunA17_Chr4g0065991 | 60.355 | 507 | 190 | 2 | 129 | 625 | 1 | 506 | 0.0 | 660 |
| Msa0179700 | MtrunA17_Chr3g0119641 | 44.681 | 658 | 302 | 10 | 26 | 628 | 78 | 728 | 0.0 | 552 |
| Msa0179700 | MtrunA17_Chr4g0023331 | 62.683 | 410 | 142 | 2 | 226 | 625 | 5 | 413 | 0.0 | 548 |
| Msa0179700 | MtrunA17_Chr3g0117081 | 28.194 | 681 | 378 | 21 | 26 | 612 | 73 | 736 | 4.58e-68 | 236 |
| Msa0179700 | MtrunA17_Chr5g0412801 | 30.722 | 485 | 305 | 10 | 145 | 612 | 238 | 708 | 5.30e-63 | 221 |
| Msa0179700 | MtrunA17_Chr4g0023321 | 38.023 | 263 | 118 | 5 | 1 | 225 | 7 | 262 | 2.23e-47 | 167 |
| Msa0179700 | MtrunA17_Chr8g0368011 | 30.650 | 323 | 205 | 8 | 133 | 446 | 255 | 567 | 2.05e-39 | 153 |
| Msa0179700 | MtrunA17_Chr8g0368021 | 34.815 | 135 | 77 | 1 | 489 | 612 | 20 | 154 | 1.92e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179700 | AT1G31690.1 | 57.492 | 654 | 226 | 6 | 25 | 629 | 26 | 676 | 0.0 | 778 |
| Msa0179700 | AT1G31710.1 | 55.963 | 654 | 231 | 8 | 26 | 626 | 28 | 677 | 0.0 | 748 |
| Msa0179700 | AT1G31670.1 | 55.030 | 656 | 223 | 10 | 25 | 629 | 106 | 740 | 0.0 | 724 |
| Msa0179700 | AT4G14940.1 | 47.248 | 654 | 282 | 8 | 10 | 612 | 8 | 649 | 0.0 | 622 |
| Msa0179700 | AT1G62810.1 | 44.479 | 652 | 299 | 11 | 17 | 614 | 53 | 695 | 0.0 | 553 |
| Msa0179700 | AT4G12290.1 | 44.042 | 663 | 304 | 12 | 26 | 628 | 82 | 737 | 0.0 | 550 |
| Msa0179700 | AT3G43670.1 | 41.602 | 649 | 316 | 11 | 18 | 612 | 35 | 674 | 3.90e-175 | 514 |
| Msa0179700 | AT4G12290.2 | 42.857 | 588 | 279 | 10 | 26 | 563 | 82 | 662 | 7.26e-158 | 469 |
| Msa0179700 | AT4G12280.1 | 50.173 | 289 | 126 | 4 | 355 | 625 | 5 | 293 | 2.28e-95 | 295 |
| Msa0179700 | AT4G12270.1 | 38.802 | 384 | 164 | 10 | 26 | 350 | 84 | 455 | 3.84e-76 | 251 |
| Msa0179700 | AT2G42490.1 | 30.435 | 506 | 311 | 12 | 133 | 612 | 253 | 743 | 4.36e-64 | 226 |
Find 165 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCTTACTGGTATATT+AGG | 0.165498 | 1_4:-67319873 | Msa0179700:CDS |
| ATTGATGCTAAAGAAATTAT+TGG | 0.173562 | 1_4:+67320780 | None:intergenic |
| CACCTTTGTCAAGACAAATT+TGG | 0.177990 | 1_4:-67319709 | Msa0179700:CDS |
| TTAAAATAGGTTGGGCTTAC+TGG | 0.179307 | 1_4:-67319882 | Msa0179700:intron |
| TTTACTGATCAGATCAAATA+TGG | 0.188193 | 1_4:+67318906 | None:intergenic |
| ACAAAACAAGGAAATCAAAT+TGG | 0.202546 | 1_4:-67319543 | Msa0179700:CDS |
| CCGTTTGGTCCAAAGCTTAA+AGG | 0.225115 | 1_4:-67322123 | Msa0179700:CDS |
| CTTTGATCAGTTGGGCCAAT+TGG | 0.227450 | 1_4:-67320836 | Msa0179700:intron |
| TACTTTGATTGTGGTGAATA+TGG | 0.233955 | 1_4:-67320651 | Msa0179700:CDS |
| AGGATTCCTCTCAAAGAAAT+TGG | 0.255874 | 1_4:+67319081 | None:intergenic |
| TACTCAGTCCCTTCAGCTTT+TGG | 0.259526 | 1_4:+67322168 | None:intergenic |
| TACTGGTATATTAGGGATTA+AGG | 0.267723 | 1_4:-67319865 | Msa0179700:CDS |
| AAAGAAATCACCACTTCATT+TGG | 0.267968 | 1_4:+67320453 | None:intergenic |
| CTTGAATGTCGAATCCTAAA+TGG | 0.275025 | 1_4:+67320808 | None:intergenic |
| ATTGGGTACCGTTTGCTTCC+AGG | 0.303677 | 1_4:-67319525 | Msa0179700:CDS |
| TTCTTTGATTTGATCTGTAT+TGG | 0.307370 | 1_4:+67319830 | None:intergenic |
| AGAACAAGGATATTGTATTA+TGG | 0.321872 | 1_4:-67319189 | Msa0179700:CDS |
| AGCAAAAGTGGATGCACAAT+TGG | 0.336397 | 1_4:+67319501 | None:intergenic |
| TATCTTGACCTTGACATTGA+TGG | 0.340459 | 1_4:-67319741 | Msa0179700:CDS |
| TTGGGCTTACTGGTATATTA+GGG | 0.355547 | 1_4:-67319872 | Msa0179700:CDS |
| GTTATTACGGTAGGTTGGTT+TGG | 0.362550 | 1_4:-67322345 | Msa0179700:intron |
| AGGAATATGACTGCATTCTA+TGG | 0.363674 | 1_4:+67322753 | None:intergenic |
| CAATACCTAGGAAAAGTTAT+TGG | 0.365047 | 1_4:-67319662 | Msa0179700:CDS |
| ACAGATATGCCTTTAAGCTT+TGG | 0.374151 | 1_4:+67322114 | None:intergenic |
| AATGTCAAGGTCAAGATAAT+AGG | 0.382154 | 1_4:+67319746 | None:intergenic |
| ACCATTCTTCACTTGGGTCT+TGG | 0.384600 | 1_4:+67320685 | None:intergenic |
| TTTGATCAGTTGGGCCAATT+GGG | 0.389327 | 1_4:-67320835 | Msa0179700:intron |
| AAGAAATCACCACTTCATTT+GGG | 0.391853 | 1_4:+67320454 | None:intergenic |
| GATGATTATCCACAAATTAG+AGG | 0.394794 | 1_4:-67319474 | Msa0179700:CDS |
| CATACAACAAAACTGAGAAA+TGG | 0.397433 | 1_4:-67319419 | Msa0179700:CDS |
| AAAGCATTAGATATCTTAAC+AGG | 0.397706 | 1_4:+67320534 | None:intergenic |
| AGGTGGTGGAGGAAGAGTTT+TGG | 0.399864 | 1_4:+67322564 | None:intergenic |
| GTGAATGCACCTCTAATTTG+TGG | 0.399902 | 1_4:+67319465 | None:intergenic |
| CTTGATGAAATGAGAATTGT+TGG | 0.407335 | 1_4:-67322219 | Msa0179700:CDS |
| ATTTCATCATGTTCCTTCTC+AGG | 0.409173 | 1_4:-67319155 | Msa0179700:CDS |
| TTGATTTCTGAAGGTGTTAG+AGG | 0.415988 | 1_4:+67322718 | None:intergenic |
| CCACTCAACGTAGGCATGAC+TGG | 0.418913 | 1_4:+67319124 | None:intergenic |
| TCTTCACTTGGGTCTTGGTA+TGG | 0.419526 | 1_4:+67320690 | None:intergenic |
| ACTATGACTATGTTATAGAT+TGG | 0.422647 | 1_4:-67320297 | Msa0179700:CDS |
| GTCAAGCCTTTGTCATAGTA+AGG | 0.426454 | 1_4:-67322540 | Msa0179700:CDS |
| TTGGGCCAATGCATAGGCTT+TGG | 0.427838 | 1_4:+67319040 | None:intergenic |
| CCATCCAAGGTCACTCCGTC+AGG | 0.427909 | 1_4:-67322065 | Msa0179700:intron |
| TGTACTTGTGGTGTTTGGTT+TGG | 0.429014 | 1_4:+67322665 | None:intergenic |
| GTGTAATACCATTCTTCACT+TGG | 0.433020 | 1_4:+67320678 | None:intergenic |
| GATTGTGGTGAATATGGCTT+TGG | 0.433096 | 1_4:-67320645 | Msa0179700:CDS |
| GTTTGGTTTGGTATGATTTG+AGG | 0.437353 | 1_4:+67322677 | None:intergenic |
| GAGGTTGTACTTGTGGTGTT+TGG | 0.438682 | 1_4:+67322660 | None:intergenic |
| ATACAACAAAACTGAGAAAT+GGG | 0.441699 | 1_4:-67319418 | Msa0179700:CDS |
| GTGAAGTGTTATTACAAGAA+TGG | 0.446073 | 1_4:-67322294 | Msa0179700:CDS |
| CCAAGTGGTAGCATCAAACT+TGG | 0.451289 | 1_4:-67320265 | Msa0179700:CDS |
| ATGATTTGAGGATTATGTTA+CGG | 0.452510 | 1_4:+67322689 | None:intergenic |
| TGATTGGATGAGAGGTTTGT+CGG | 0.455041 | 1_4:+67322609 | None:intergenic |
| ATCCTTTGTATAGTACTTCA+CGG | 0.458399 | 1_4:+67320733 | None:intergenic |
| GGCTACCCTATCCTTACCTT+TGG | 0.459203 | 1_4:-67322439 | Msa0179700:intron |
| TTACTGATCAGATCAAATAT+GGG | 0.471418 | 1_4:+67318907 | None:intergenic |
| GTTAGAGGGTCAAGTGGGTG+AGG | 0.473682 | 1_4:+67322733 | None:intergenic |
| CAAGATAATAGGTAAAGAAA+TGG | 0.475626 | 1_4:+67319757 | None:intergenic |
| GATTGGATGAGAGGTTTGTC+GGG | 0.476595 | 1_4:+67322610 | None:intergenic |
| GGATAGGGAGATTGAGAACA+AGG | 0.479632 | 1_4:-67319203 | Msa0179700:CDS |
| TAATCATCAGTTAGCAAAAG+TGG | 0.479949 | 1_4:+67319489 | None:intergenic |
| TGTTCACCAAAGGTAAGGAT+AGG | 0.481924 | 1_4:+67322433 | None:intergenic |
| CAAAACAAGGAAATCAAATT+GGG | 0.482146 | 1_4:-67319542 | Msa0179700:CDS |
| AAAACAATCCCTCGAAATCA+TGG | 0.482562 | 1_4:-67322512 | Msa0179700:CDS |
| TCCTAAATGGAAAACCCAAT+TGG | 0.486397 | 1_4:+67320821 | None:intergenic |
| CTATGACTATGTTATAGATT+GGG | 0.493323 | 1_4:-67320296 | Msa0179700:CDS |
| AAGTTATTGGACTGTTGTAA+AGG | 0.495057 | 1_4:-67319649 | Msa0179700:CDS |
| ATTGTATTATGGCACACAAT+GGG | 0.500762 | 1_4:-67319178 | Msa0179700:CDS |
| GCAAAAGTGGATGCACAATT+GGG | 0.501386 | 1_4:+67319502 | None:intergenic |
| TCTAAGATGAAGCCACCGTT+TGG | 0.502594 | 1_4:-67322138 | Msa0179700:CDS |
| TTCCTCTCAAAGAAATTGGT+TGG | 0.505842 | 1_4:+67319085 | None:intergenic |
| AGTGGATGCACAATTGGGCC+TGG | 0.506196 | 1_4:+67319507 | None:intergenic |
| CCTTTAAGCTTTGGACCAAA+CGG | 0.506349 | 1_4:+67322123 | None:intergenic |
| TACACAACCTACTTTGATTG+TGG | 0.507919 | 1_4:-67320660 | Msa0179700:CDS |
| ATTTGTCTTGACAAAGGTGT+TGG | 0.508980 | 1_4:+67319713 | None:intergenic |
| TTTGTATGCAAGACCATTGG+AGG | 0.509999 | 1_4:-67322262 | Msa0179700:CDS |
| GAATTGAATGTGTAGGGATA+GGG | 0.511193 | 1_4:-67319218 | Msa0179700:intron |
| TGTAATACCATTCTTCACTT+GGG | 0.512744 | 1_4:+67320679 | None:intergenic |
| GGTATATTAGGGATTAAGGC+AGG | 0.513268 | 1_4:-67319861 | Msa0179700:CDS |
| GACCAACCAATTTCTTTGAG+AGG | 0.513325 | 1_4:-67319087 | Msa0179700:CDS |
| TGTTGGAGGATAGCCATGAT+TGG | 0.516217 | 1_4:+67322593 | None:intergenic |
| TTGAAACTGATCTCACTACT+AGG | 0.522360 | 1_4:+67320329 | None:intergenic |
| ACCAAGACCCAAGTGAAGAA+TGG | 0.525685 | 1_4:-67320686 | Msa0179700:CDS |
| TGGTTTGTTCACCAAAGGTA+AGG | 0.530916 | 1_4:+67322428 | None:intergenic |
| ACAAACCTCTCATCCAATCA+TGG | 0.531898 | 1_4:-67322606 | Msa0179700:CDS |
| CGGACAAGGTTGATTTCTGA+AGG | 0.532937 | 1_4:+67322709 | None:intergenic |
| ACAAAGGCTTGACGAGGTGG+TGG | 0.532967 | 1_4:+67322550 | None:intergenic |
| ATTACCTGACGGAGTGACCT+TGG | 0.533638 | 1_4:+67322061 | None:intergenic |
| CAGTAAAATTCCTATGTGAC+TGG | 0.533735 | 1_4:-67318890 | Msa0179700:three_prime_UTR |
| TTGGAACCTTACTATGACAA+AGG | 0.533882 | 1_4:+67322534 | None:intergenic |
| TACGGTAGGTTGGTTTGGAG+AGG | 0.534150 | 1_4:-67322340 | Msa0179700:intron |
| TGTGGCAGATAACTGAGGTC+AGG | 0.540891 | 1_4:-67320363 | Msa0179700:intron |
| CATTCACTAATTATAATGTG+TGG | 0.543852 | 1_4:-67319449 | Msa0179700:CDS |
| ATTGGAGGGTGTGGCAGCTG+TGG | 0.548777 | 1_4:-67322247 | Msa0179700:CDS |
| CCAAGTTTGATGCTACCACT+TGG | 0.551888 | 1_4:+67320265 | None:intergenic |
| TCTAGGAAGACAGCATTGGC+AGG | 0.552138 | 1_4:+67320585 | None:intergenic |
| TAAGAGCATGATGAGGAGAA+AGG | 0.552830 | 1_4:+67322783 | None:intergenic |
| CAAGTGGTAGCATCAAACTT+GGG | 0.552885 | 1_4:-67320264 | Msa0179700:CDS |
| TGCAAGACCATTGGAGGGTG+TGG | 0.554369 | 1_4:-67322256 | Msa0179700:CDS |
| AAGGCTTGACGAGGTGGTGG+AGG | 0.554722 | 1_4:+67322553 | None:intergenic |
| CCAGTCATGCCTACGTTGAG+TGG | 0.556192 | 1_4:-67319124 | Msa0179700:CDS |
| TAATGTTGAAAAGTGCAGTT+GGG | 0.556487 | 1_4:+67319022 | None:intergenic |
| AAAAGTCTACCATGATTTCG+AGG | 0.556844 | 1_4:+67322503 | None:intergenic |
| ATTCCAGTGCCAAAAGCTGA+AGG | 0.560303 | 1_4:-67322177 | Msa0179700:CDS |
| CTCCAAATTTGTCTTGACAA+AGG | 0.561847 | 1_4:+67319707 | None:intergenic |
| CTAATGTTGAAAAGTGCAGT+TGG | 0.562794 | 1_4:+67319021 | None:intergenic |
| GTGCAGTTGGGCCAATGCAT+AGG | 0.562944 | 1_4:+67319034 | None:intergenic |
| GTTCACCAAAGGTAAGGATA+GGG | 0.566348 | 1_4:+67322434 | None:intergenic |
| GATAGCCATGATTGGATGAG+AGG | 0.567567 | 1_4:+67322601 | None:intergenic |
| GTGAGATCAGTTTCAACTGT+GGG | 0.567760 | 1_4:-67320322 | Msa0179700:CDS |
| TAATTTGTATGCAAGACCAT+TGG | 0.568732 | 1_4:-67322265 | Msa0179700:CDS |
| TTGCTAGCTGATAACACCAT+TGG | 0.576690 | 1_4:-67319792 | Msa0179700:CDS |
| TGATTTCTGAAGGTGTTAGA+GGG | 0.580744 | 1_4:+67322719 | None:intergenic |
| AAAGTCTACCATGATTTCGA+GGG | 0.581187 | 1_4:+67322504 | None:intergenic |
| AACAAAACTGAGAAATGGGC+AGG | 0.581483 | 1_4:-67319414 | Msa0179700:CDS |
| ACTGGATAATCTTCCTGAGA+AGG | 0.584969 | 1_4:+67319142 | None:intergenic |
| TAAGCCTTCTGAGTTACTAG+TGG | 0.586124 | 1_4:-67319583 | Msa0179700:CDS |
| ACAGCTGCCACACCCTCCAA+TGG | 0.586261 | 1_4:+67322249 | None:intergenic |
| CAAATCAAAGAAGACATACA+TGG | 0.588282 | 1_4:-67319819 | Msa0179700:CDS |
| GTCATGCCTACGTTGAGTGG+TGG | 0.588484 | 1_4:-67319121 | Msa0179700:CDS |
| GGACCTGGTTTCACCATCCA+AGG | 0.591002 | 1_4:-67322078 | Msa0179700:CDS |
| TATTGTATTATGGCACACAA+TGG | 0.591427 | 1_4:-67319179 | Msa0179700:CDS |
| ATATTCACCACAATCAAAGT+AGG | 0.591448 | 1_4:+67320653 | None:intergenic |
| AAGCAGAATAGTATGCGTCT+AGG | 0.592646 | 1_4:+67320568 | None:intergenic |
| TTAGGATTCGACATTCAAGT+TGG | 0.594138 | 1_4:-67320804 | Msa0179700:CDS |
| AATTGCAATCCCAAATGAAG+TGG | 0.594960 | 1_4:-67320463 | Msa0179700:intron |
| AATCACCAAAGCCTATGCAT+TGG | 0.596584 | 1_4:-67319045 | Msa0179700:CDS |
| ATTCACTAATTATAATGTGT+GGG | 0.598904 | 1_4:-67319448 | Msa0179700:CDS |
| ACAACGAAGACCAGTCACAT+AGG | 0.600423 | 1_4:+67318880 | None:intergenic |
| AATAGGTAAAGAAATGGTCA+TGG | 0.601680 | 1_4:+67319763 | None:intergenic |
| TGCGTCTAGGAAGACAGCAT+TGG | 0.603158 | 1_4:+67320581 | None:intergenic |
| TGAGGATTATGTTACGGACA+AGG | 0.603616 | 1_4:+67322695 | None:intergenic |
| TGAAAGATCAAACAATACCT+AGG | 0.603738 | 1_4:-67319674 | Msa0179700:CDS |
| CAATTGGGCCTGGAAGCAAA+CGG | 0.613823 | 1_4:+67319517 | None:intergenic |
| GATTGGGAGTTTAAGCCAAG+TGG | 0.613885 | 1_4:-67320280 | Msa0179700:CDS |
| ATCTCAACAAAACTCTACAA+AGG | 0.617196 | 1_4:-67322466 | Msa0179700:CDS |
| GAAAAGTGAGGTTGTACTTG+TGG | 0.617990 | 1_4:+67322653 | None:intergenic |
| TGACCTTGGATGGTGAAACC+AGG | 0.621250 | 1_4:+67322075 | None:intergenic |
| TTGGCAGGACAATCTGTGAA+AGG | 0.622053 | 1_4:+67320600 | None:intergenic |
| GCATACTATTCTGCTTCAGA+TGG | 0.624085 | 1_4:-67320561 | Msa0179700:CDS |
| CCTGACGGAGTGACCTTGGA+TGG | 0.627284 | 1_4:+67322065 | None:intergenic |
| TGGCTTCACCATCAATGTCA+AGG | 0.628699 | 1_4:+67319733 | None:intergenic |
| TTGTATGCAAGACCATTGGA+GGG | 0.628719 | 1_4:-67322261 | Msa0179700:CDS |
| GAAGGTGTTAGAGGGTCAAG+TGG | 0.633794 | 1_4:+67322727 | None:intergenic |
| GCTGATGCAAGAGTCAACAT+TGG | 0.634134 | 1_4:-67319609 | Msa0179700:CDS |
| TTAAGCTTTGGACCAAACGG+TGG | 0.635575 | 1_4:+67322126 | None:intergenic |
| ATGACAAAGGCTTGACGAGG+TGG | 0.637143 | 1_4:+67322547 | None:intergenic |
| TTTACCACTAGTAACTCAGA+AGG | 0.641809 | 1_4:+67319579 | None:intergenic |
| TTCCAGTGCCAAAAGCTGAA+GGG | 0.644894 | 1_4:-67322176 | Msa0179700:CDS |
| GTATATTAGGGATTAAGGCA+GGG | 0.645710 | 1_4:-67319860 | Msa0179700:CDS |
| AAGTGGTAGCATCAAACTTG+GGG | 0.646028 | 1_4:-67320263 | Msa0179700:intron |
| ATGGTCATGGTAGACACCAA+TGG | 0.648331 | 1_4:+67319776 | None:intergenic |
| GTAAGTCAACATGATGGACC+TGG | 0.649655 | 1_4:-67322093 | Msa0179700:CDS |
| TACCGTGAAGTACTATACAA+AGG | 0.653255 | 1_4:-67320735 | Msa0179700:CDS |
| AAAACTGAGAAATGGGCAGG+AGG | 0.656721 | 1_4:-67319411 | Msa0179700:CDS |
| ACAAAACTCTACAAAGGACA+AGG | 0.665601 | 1_4:-67322460 | Msa0179700:CDS |
| AAGGTGTTAGAGGGTCAAGT+GGG | 0.671650 | 1_4:+67322728 | None:intergenic |
| ATCCTACGTAATGAAAAGTG+AGG | 0.680673 | 1_4:+67322641 | None:intergenic |
| ATATCTGTAAGTCAACATGA+TGG | 0.685391 | 1_4:-67322099 | Msa0179700:CDS |
| AGTTACATAAGAGCATGATG+AGG | 0.688695 | 1_4:+67322776 | None:intergenic |
| AGTGAGATCAGTTTCAACTG+TGG | 0.705294 | 1_4:-67320323 | Msa0179700:CDS |
| AGCATGCTGGTGATATCATG+TGG | 0.712068 | 1_4:-67320497 | Msa0179700:CDS |
| ACTATGACAAAGGCTTGACG+AGG | 0.716443 | 1_4:+67322544 | None:intergenic |
| TCAAATCCACCACTCAACGT+AGG | 0.724526 | 1_4:+67319115 | None:intergenic |
| TATATGTTGATCATAGCCAG+AGG | 0.724709 | 1_4:-67319386 | Msa0179700:intron |
| TTGTCTGTGGCAGATAACTG+AGG | 0.792589 | 1_4:-67320368 | Msa0179700:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTCTTTATAATTTTTTTT+TGG | - | chr1_4:67320125-67320144 | Msa0179700:intron | 10.0% |
| !! | ATTCAAATTATAAAATGATA+TGG | + | chr1_4:67320306-67320325 | None:intergenic | 10.0% |
| !! | ATATTAATTAAGAATTGAAA+AGG | + | chr1_4:67320396-67320415 | None:intergenic | 10.0% |
| !!! | TAATTGCTATATTTTAAAAT+AGG | - | chr1_4:67321760-67321779 | Msa0179700:intron | 10.0% |
| !! | TAATGCATAATATTAGTATA+AGG | + | chr1_4:67319967-67319986 | None:intergenic | 15.0% |
| !!! | ATTCAAACTATGTTTTTTTA+AGG | + | chr1_4:67320052-67320071 | None:intergenic | 15.0% |
| !!! | GTTTTTAAATTCAATATTAC+TGG | + | chr1_4:67320436-67320455 | None:intergenic | 15.0% |
| !! | TAGAAAAACACATTATTAAT+GGG | + | chr1_4:67320618-67320637 | None:intergenic | 15.0% |
| !! | TTAGAAAAACACATTATTAA+TGG | + | chr1_4:67320619-67320638 | None:intergenic | 15.0% |
| !!! | TTACTTGTTATAATTTTGTT+GGG | - | chr1_4:67321703-67321722 | Msa0179700:intron | 15.0% |
| !! | TGTTCTCATTAAAAATTATA+AGG | - | chr1_4:67322662-67322681 | Msa0179700:CDS | 15.0% |
| !! | AAGAAATGAGAATGTTATTA+CGG | - | chr1_4:67319297-67319316 | Msa0179700:intron | 20.0% |
| !! | ATATATAAATTAGCGACTAA+TGG | - | chr1_4:67319678-67319697 | Msa0179700:CDS | 20.0% |
| !! | GCACAAAAAATATTAGTATA+AGG | - | chr1_4:67319865-67319884 | Msa0179700:CDS | 20.0% |
| !! | AAAAATATTAGTATAAGGTC+TGG | - | chr1_4:67319870-67319889 | Msa0179700:CDS | 20.0% |
| !!! | AATGTTGTCTAATTTTTTTG+TGG | + | chr1_4:67319913-67319932 | None:intergenic | 20.0% |
| !!! | AATTAGACAACATTTTTTTG+TGG | - | chr1_4:67319919-67319938 | Msa0179700:intron | 20.0% |
| !!! | TTTTAAAACTGTTATACTGT+TGG | - | chr1_4:67320175-67320194 | Msa0179700:intron | 20.0% |
| !! | TAGAAAAACACATTGTTAAT+GGG | + | chr1_4:67320362-67320381 | None:intergenic | 20.0% |
| !! | TTAGAAAAACACATTGTTAA+TGG | + | chr1_4:67320363-67320382 | None:intergenic | 20.0% |
| !! | TAAAAAACTACAATGATTGA+TGG | - | chr1_4:67320704-67320723 | Msa0179700:CDS | 20.0% |
| !! | TTCATTCATATTAGATATGT+TGG | + | chr1_4:67320753-67320772 | None:intergenic | 20.0% |
| !! | ATTGATGCTAAAGAAATTAT+TGG | + | chr1_4:67320878-67320897 | None:intergenic | 20.0% |
| !!! | TTTGTTTCTTTAATCAAACT+TGG | - | chr1_4:67321474-67321493 | Msa0179700:intron | 20.0% |
| !!! | GTTACTTGTTATAATTTTGT+TGG | - | chr1_4:67321702-67321721 | Msa0179700:intron | 20.0% |
| !!! | TGCTATATTTTAAAATAGGT+TGG | - | chr1_4:67321764-67321783 | Msa0179700:intron | 20.0% |
| !!! | GCTATATTTTAAAATAGGTT+GGG | - | chr1_4:67321765-67321784 | Msa0179700:intron | 20.0% |
| !!! | CCTTGTTTTGTTTTTTTATT+AGG | + | chr1_4:67322103-67322122 | None:intergenic | 20.0% |
| !! | CCTAATAAAAAAACAAAACA+AGG | - | chr1_4:67322100-67322119 | Msa0179700:CDS | 20.0% |
| !! | ATTCACTAATTATAATGTGT+GGG | - | chr1_4:67322207-67322226 | Msa0179700:CDS | 20.0% |
| !!! | AATCTATGTAATTTTCTCAA+GGG | - | chr1_4:67322699-67322718 | Msa0179700:CDS | 20.0% |
| ! | ATGATTTGAGGATTATGTTA+CGG | + | chr1_4:67318969-67318988 | None:intergenic | 25.0% |
| ! | TTCTTCAACGAATGTTTAAA+CGG | + | chr1_4:67319282-67319301 | None:intergenic | 25.0% |
| ! | CAAAATTGTTAGGATGAAAT+TGG | + | chr1_4:67319645-67319664 | None:intergenic | 25.0% |
| !!! | TCTAATTTTTTTGTGGTGAT+CGG | + | chr1_4:67319906-67319925 | None:intergenic | 25.0% |
| ! | CATAATATTAGTATAAGGTC+TGG | + | chr1_4:67319962-67319981 | None:intergenic | 25.0% |
| !!! | TTTTTAAGGAACTTCAAACT+AGG | + | chr1_4:67320038-67320057 | None:intergenic | 25.0% |
| !! | TAAATGATATTTTACCGCTT+AGG | - | chr1_4:67320224-67320243 | Msa0179700:intron | 25.0% |
| !!! | TATCTTATTTTTGTCCTAAG+CGG | + | chr1_4:67320241-67320260 | None:intergenic | 25.0% |
| ! | AAAAACTACAATGATTCTGA+TGG | - | chr1_4:67320450-67320469 | Msa0179700:intron | 25.0% |
| ! | GTTAGAATGCAAGAAAAAAA+TGG | + | chr1_4:67320544-67320563 | None:intergenic | 25.0% |
| !! | AAACACATTATTAATGGGTA+TGG | + | chr1_4:67320613-67320632 | None:intergenic | 25.0% |
| ! | TGTTAATTAAGAGTTTGAAG+AGG | + | chr1_4:67320652-67320671 | None:intergenic | 25.0% |
| !! | ACAATTTTCTTTGATCAGTT+GGG | - | chr1_4:67320811-67320830 | Msa0179700:CDS | 25.0% |
| !! | AAAGCATTAGATATCTTAAC+AGG | + | chr1_4:67321124-67321143 | None:intergenic | 25.0% |
| !! | ATATAACTATTGATTGTCTG+TGG | - | chr1_4:67321274-67321293 | Msa0179700:intron | 25.0% |
| ! | ACTATGACTATGTTATAGAT+TGG | - | chr1_4:67321358-67321377 | Msa0179700:intron | 25.0% |
| ! | CTATGACTATGTTATAGATT+GGG | - | chr1_4:67321359-67321378 | Msa0179700:intron | 25.0% |
| ! | TATATATGGCATAACACATT+TGG | + | chr1_4:67321432-67321451 | None:intergenic | 25.0% |
| ! | AAACAAATGATCCAAATTTC+AGG | + | chr1_4:67321461-67321480 | None:intergenic | 25.0% |
| ! | TTCTCTAGCATTTAAACTTA+AGG | + | chr1_4:67321613-67321632 | None:intergenic | 25.0% |
| !!! | TTCTTTGATTTGATCTGTAT+TGG | + | chr1_4:67321828-67321847 | None:intergenic | 25.0% |
| ! | CAAGATAATAGGTAAAGAAA+TGG | + | chr1_4:67321901-67321920 | None:intergenic | 25.0% |
| ! | ACAAAACAAGGAAATCAAAT+TGG | - | chr1_4:67322112-67322131 | Msa0179700:CDS | 25.0% |
| ! | CAAAACAAGGAAATCAAATT+GGG | - | chr1_4:67322113-67322132 | Msa0179700:CDS | 25.0% |
| ! | CATTCACTAATTATAATGTG+TGG | - | chr1_4:67322206-67322225 | Msa0179700:CDS | 25.0% |
| ! | ATACAACAAAACTGAGAAAT+GGG | - | chr1_4:67322237-67322256 | Msa0179700:CDS | 25.0% |
| !! | GTGAGAAATTGTTAATGTTT+TGG | - | chr1_4:67322403-67322422 | Msa0179700:intron | 25.0% |
| ! | ATGAATTGAATTGAATGTGT+AGG | - | chr1_4:67322430-67322449 | Msa0179700:intron | 25.0% |
| ! | TGAATTGAATTGAATGTGTA+GGG | - | chr1_4:67322431-67322450 | Msa0179700:intron | 25.0% |
| ! | AGAACAAGGATATTGTATTA+TGG | - | chr1_4:67322466-67322485 | Msa0179700:CDS | 25.0% |
| !! | CAATCTATGTAATTTTCTCA+AGG | - | chr1_4:67322698-67322717 | Msa0179700:CDS | 25.0% |
| ! | TTACTGATCAGATCAAATAT+GGG | + | chr1_4:67322751-67322770 | None:intergenic | 25.0% |
| ! | TTTACTGATCAGATCAAATA+TGG | + | chr1_4:67322752-67322771 | None:intergenic | 25.0% |
| !!! | GTAGAGTTTTGTTGAGATTA+TGG | + | chr1_4:67319187-67319206 | None:intergenic | 30.0% |
| ATCTCAACAAAACTCTACAA+AGG | - | chr1_4:67319189-67319208 | Msa0179700:CDS | 30.0% | |
| AATGAGAATGTTATTACGGT+AGG | - | chr1_4:67319301-67319320 | Msa0179700:intron | 30.0% | |
| ! | GTGAAGTGTTATTACAAGAA+TGG | - | chr1_4:67319361-67319380 | Msa0179700:intron | 30.0% |
| ! | TAATTTGTATGCAAGACCAT+TGG | - | chr1_4:67319390-67319409 | Msa0179700:CDS | 30.0% |
| CTTGATGAAATGAGAATTGT+TGG | - | chr1_4:67319436-67319455 | Msa0179700:CDS | 30.0% | |
| ATATCTGTAAGTCAACATGA+TGG | - | chr1_4:67319556-67319575 | Msa0179700:CDS | 30.0% | |
| TTTACAAGACTATTACCTGA+CGG | + | chr1_4:67319608-67319627 | None:intergenic | 30.0% | |
| TGTGATGCAACAAAATTGTT+AGG | + | chr1_4:67319655-67319674 | None:intergenic | 30.0% | |
| ! | GATCCTTCAAAATTTTCTTG+CGG | + | chr1_4:67319800-67319819 | None:intergenic | 30.0% |
| !!! | TAATTTTTTTGTGGTGATCG+GGG | + | chr1_4:67319904-67319923 | None:intergenic | 30.0% |
| !!! | CTAATTTTTTTGTGGTGATC+GGG | + | chr1_4:67319905-67319924 | None:intergenic | 30.0% |
| !!! | CAACATTTTTTTGTGGTGAT+CGG | - | chr1_4:67319926-67319945 | Msa0179700:intron | 30.0% |
| !!! | AACATTTTTTTGTGGTGATC+GGG | - | chr1_4:67319927-67319946 | Msa0179700:intron | 30.0% |
| ! | GTATTTTCAAATATCAGCTG+TGG | + | chr1_4:67320503-67320522 | None:intergenic | 30.0% |
| AAATACTACATGCGTAATAG+TGG | - | chr1_4:67320517-67320536 | Msa0179700:CDS | 30.0% | |
| AATACTACATGCGTAATAGT+GGG | - | chr1_4:67320518-67320537 | Msa0179700:CDS | 30.0% | |
| ! | GACAATTTTCTTTGATCAGT+TGG | - | chr1_4:67320810-67320829 | Msa0179700:CDS | 30.0% |
| ATCCTTTGTATAGTACTTCA+CGG | + | chr1_4:67320925-67320944 | None:intergenic | 30.0% | |
| TGTAATACCATTCTTCACTT+GGG | + | chr1_4:67320979-67320998 | None:intergenic | 30.0% | |
| ATATTCACCACAATCAAAGT+AGG | + | chr1_4:67321005-67321024 | None:intergenic | 30.0% | |
| TACTTTGATTGTGGTGAATA+TGG | - | chr1_4:67321004-67321023 | Msa0179700:intron | 30.0% | |
| AAGAAATCACCACTTCATTT+GGG | + | chr1_4:67321204-67321223 | None:intergenic | 30.0% | |
| AAAGAAATCACCACTTCATT+TGG | + | chr1_4:67321205-67321224 | None:intergenic | 30.0% | |
| ATTTCAGGCATGACTATATA+TGG | + | chr1_4:67321446-67321465 | None:intergenic | 30.0% | |
| ATATAGTCATGCCTGAAATT+TGG | - | chr1_4:67321447-67321466 | Msa0179700:intron | 30.0% | |
| AAATGCTAGAGAACATGATA+TGG | - | chr1_4:67321620-67321639 | Msa0179700:intron | 30.0% | |
| ACTATCACATTTCCGTTTAA+CGG | + | chr1_4:67321647-67321666 | None:intergenic | 30.0% | |
| TACTGGTATATTAGGGATTA+AGG | - | chr1_4:67321790-67321809 | Msa0179700:intron | 30.0% | |
| CAAATCAAAGAAGACATACA+TGG | - | chr1_4:67321836-67321855 | Msa0179700:intron | 30.0% | |
| AATAGGTAAAGAAATGGTCA+TGG | + | chr1_4:67321895-67321914 | None:intergenic | 30.0% | |
| AATGTCAAGGTCAAGATAAT+AGG | + | chr1_4:67321912-67321931 | None:intergenic | 30.0% | |
| TGAAAGATCAAACAATACCT+AGG | - | chr1_4:67321981-67322000 | Msa0179700:intron | 30.0% | |
| CAATACCTAGGAAAAGTTAT+TGG | - | chr1_4:67321993-67322012 | Msa0179700:intron | 30.0% | |
| AAGTTATTGGACTGTTGTAA+AGG | - | chr1_4:67322006-67322025 | Msa0179700:intron | 30.0% | |
| TAATCATCAGTTAGCAAAAG+TGG | + | chr1_4:67322169-67322188 | None:intergenic | 30.0% | |
| GATGATTATCCACAAATTAG+AGG | - | chr1_4:67322181-67322200 | Msa0179700:CDS | 30.0% | |
| !!! | CATTTCTCAGTTTTGTTGTA+TGG | + | chr1_4:67322238-67322257 | None:intergenic | 30.0% |
| CATACAACAAAACTGAGAAA+TGG | - | chr1_4:67322236-67322255 | Msa0179700:CDS | 30.0% | |
| ! | AAGGTGAGTCCATTAAATTT+TGG | - | chr1_4:67322319-67322338 | Msa0179700:CDS | 30.0% |
| TGAGCAAAGCCAAAATTTAA+TGG | + | chr1_4:67322331-67322350 | None:intergenic | 30.0% | |
| TATTGTATTATGGCACACAA+TGG | - | chr1_4:67322476-67322495 | Msa0179700:CDS | 30.0% | |
| ATTGTATTATGGCACACAAT+GGG | - | chr1_4:67322477-67322496 | Msa0179700:CDS | 30.0% | |
| !!! | GGTGATTTTGTTTTAAGAAC+AGG | + | chr1_4:67322597-67322616 | None:intergenic | 30.0% |
| ! | TAATGTTGAAAAGTGCAGTT+GGG | + | chr1_4:67322636-67322655 | None:intergenic | 30.0% |
| ! | AGTTACATAAGAGCATGATG+AGG | + | chr1_4:67318882-67318901 | None:intergenic | 35.0% |
| AGGAATATGACTGCATTCTA+TGG | + | chr1_4:67318905-67318924 | None:intergenic | 35.0% | |
| !! | TGATTTCTGAAGGTGTTAGA+GGG | + | chr1_4:67318939-67318958 | None:intergenic | 35.0% |
| !! | TTGATTTCTGAAGGTGTTAG+AGG | + | chr1_4:67318940-67318959 | None:intergenic | 35.0% |
| !! | GTTTGGTTTGGTATGATTTG+AGG | + | chr1_4:67318981-67319000 | None:intergenic | 35.0% |
| !! | AACCTCACTTTTCATTACGT+AGG | - | chr1_4:67319012-67319031 | Msa0179700:exon | 35.0% |
| ATCCTACGTAATGAAAAGTG+AGG | + | chr1_4:67319017-67319036 | None:intergenic | 35.0% | |
| !!! | AAGAGTTTTGGTTTTGGTGT+TGG | + | chr1_4:67319082-67319101 | None:intergenic | 35.0% |
| TTGGAACCTTACTATGACAA+AGG | + | chr1_4:67319124-67319143 | None:intergenic | 35.0% | |
| ! | TGATTTCGAGGGATTGTTTT+TGG | + | chr1_4:67319143-67319162 | None:intergenic | 35.0% |
| AAAACAATCCCTCGAAATCA+TGG | - | chr1_4:67319143-67319162 | Msa0179700:CDS | 35.0% | |
| AAAGTCTACCATGATTTCGA+GGG | + | chr1_4:67319154-67319173 | None:intergenic | 35.0% | |
| AAAAGTCTACCATGATTTCG+AGG | + | chr1_4:67319155-67319174 | None:intergenic | 35.0% | |
| ACAAAACTCTACAAAGGACA+AGG | - | chr1_4:67319195-67319214 | Msa0179700:CDS | 35.0% | |
| TTAAACGGTTCATAGGTGAA+TGG | + | chr1_4:67319267-67319286 | None:intergenic | 35.0% | |
| CGAATGTTTAAACGGTTCAT+AGG | + | chr1_4:67319274-67319293 | None:intergenic | 35.0% | |
| AGAATGTTATTACGGTAGGT+TGG | - | chr1_4:67319305-67319324 | Msa0179700:intron | 35.0% | |
| ACAGATATGCCTTTAAGCTT+TGG | + | chr1_4:67319544-67319563 | None:intergenic | 35.0% | |
| !!! | ACATTTTTTTGTGGTGATCG+GGG | - | chr1_4:67319928-67319947 | Msa0179700:intron | 35.0% |
| ! | AACACATTGTTAATGGGTCA+GGG | + | chr1_4:67320356-67320375 | None:intergenic | 35.0% |
| ! | AAACACATTGTTAATGGGTC+AGG | + | chr1_4:67320357-67320376 | None:intergenic | 35.0% |
| TTTCAAATATCAGCTGTGGT+TGG | + | chr1_4:67320499-67320518 | None:intergenic | 35.0% | |
| TCCTAAATGGAAAACCCAAT+TGG | + | chr1_4:67320837-67320856 | None:intergenic | 35.0% | |
| CTTGAATGTCGAATCCTAAA+TGG | + | chr1_4:67320850-67320869 | None:intergenic | 35.0% | |
| TTAGGATTCGACATTCAAGT+TGG | - | chr1_4:67320851-67320870 | Msa0179700:intron | 35.0% | |
| ! | TACCGTGAAGTACTATACAA+AGG | - | chr1_4:67320920-67320939 | Msa0179700:intron | 35.0% |
| GTGTAATACCATTCTTCACT+TGG | + | chr1_4:67320980-67320999 | None:intergenic | 35.0% | |
| TACACAACCTACTTTGATTG+TGG | - | chr1_4:67320995-67321014 | Msa0179700:intron | 35.0% | |
| !! | TGTATTTTTGAGAAGCATGC+TGG | - | chr1_4:67321145-67321164 | Msa0179700:intron | 35.0% |
| AATTGCAATCCCAAATGAAG+TGG | - | chr1_4:67321192-67321211 | Msa0179700:intron | 35.0% | |
| TTGAAACTGATCTCACTACT+AGG | + | chr1_4:67321329-67321348 | None:intergenic | 35.0% | |
| ACATGATATGGTCCGTTAAA+CGG | - | chr1_4:67321632-67321651 | Msa0179700:intron | 35.0% | |
| ! | TTAAAATAGGTTGGGCTTAC+TGG | - | chr1_4:67321773-67321792 | Msa0179700:intron | 35.0% |
| TTGGGCTTACTGGTATATTA+GGG | - | chr1_4:67321783-67321802 | Msa0179700:intron | 35.0% | |
| GTATATTAGGGATTAAGGCA+GGG | - | chr1_4:67321795-67321814 | Msa0179700:intron | 35.0% | |
| TATCTTGACCTTGACATTGA+TGG | - | chr1_4:67321914-67321933 | Msa0179700:intron | 35.0% | |
| ! | ATTTGTCTTGACAAAGGTGT+TGG | + | chr1_4:67321945-67321964 | None:intergenic | 35.0% |
| CACCTTTGTCAAGACAAATT+TGG | - | chr1_4:67321946-67321965 | Msa0179700:intron | 35.0% | |
| CTCCAAATTTGTCTTGACAA+AGG | + | chr1_4:67321951-67321970 | None:intergenic | 35.0% | |
| ! | ACAGTCCAATAACTTTTCCT+AGG | + | chr1_4:67322001-67322020 | None:intergenic | 35.0% |
| TTTACCACTAGTAACTCAGA+AGG | + | chr1_4:67322079-67322098 | None:intergenic | 35.0% | |
| TATATGTTGATCATAGCCAG+AGG | - | chr1_4:67322269-67322288 | Msa0179700:CDS | 35.0% | |
| GTGATGATACTTTAGCAGTT+TGG | - | chr1_4:67322291-67322310 | Msa0179700:CDS | 35.0% | |
| TGAATTGAATGTGTAGGGAT+AGG | - | chr1_4:67322436-67322455 | Msa0179700:intron | 35.0% | |
| GAATTGAATGTGTAGGGATA+GGG | - | chr1_4:67322437-67322456 | Msa0179700:intron | 35.0% | |
| ATTTCATCATGTTCCTTCTC+AGG | - | chr1_4:67322500-67322519 | Msa0179700:CDS | 35.0% | |
| TTCCTCTCAAAGAAATTGGT+TGG | + | chr1_4:67322573-67322592 | None:intergenic | 35.0% | |
| AGGATTCCTCTCAAAGAAAT+TGG | + | chr1_4:67322577-67322596 | None:intergenic | 35.0% | |
| ! | CTAATGTTGAAAAGTGCAGT+TGG | + | chr1_4:67322637-67322656 | None:intergenic | 35.0% |
| CAGTAAAATTCCTATGTGAC+TGG | - | chr1_4:67322765-67322784 | Msa0179700:CDS | 35.0% | |
| ! | TAAGAGCATGATGAGGAGAA+AGG | + | chr1_4:67318875-67318894 | None:intergenic | 40.0% |
| TGAGGATTATGTTACGGACA+AGG | + | chr1_4:67318963-67318982 | None:intergenic | 40.0% | |
| TGTACTTGTGGTGTTTGGTT+TGG | + | chr1_4:67318993-67319012 | None:intergenic | 40.0% | |
| GAAAAGTGAGGTTGTACTTG+TGG | + | chr1_4:67319005-67319024 | None:intergenic | 40.0% | |
| TGATTGGATGAGAGGTTTGT+CGG | + | chr1_4:67319049-67319068 | None:intergenic | 40.0% | |
| ACAAACCTCTCATCCAATCA+TGG | - | chr1_4:67319049-67319068 | Msa0179700:CDS | 40.0% | |
| !!! | AGTTTTGGTTTTGGTGTTGG+AGG | + | chr1_4:67319079-67319098 | None:intergenic | 40.0% |
| !!! | TGGAGGAAGAGTTTTGGTTT+TGG | + | chr1_4:67319088-67319107 | None:intergenic | 40.0% |
| GTCAAGCCTTTGTCATAGTA+AGG | - | chr1_4:67319115-67319134 | Msa0179700:CDS | 40.0% | |
| GTTCACCAAAGGTAAGGATA+GGG | + | chr1_4:67319224-67319243 | None:intergenic | 40.0% | |
| TGTTCACCAAAGGTAAGGAT+AGG | + | chr1_4:67319225-67319244 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTCACCAAAGGTA+AGG | + | chr1_4:67319230-67319249 | None:intergenic | 40.0% |
| !! | TGCAATGGTTTGTTCACCAA+AGG | + | chr1_4:67319235-67319254 | None:intergenic | 40.0% |
| GAATGGTAACTGTGATGCAA+TGG | + | chr1_4:67319250-67319269 | None:intergenic | 40.0% | |
| !! | GTTATTACGGTAGGTTGGTT+TGG | - | chr1_4:67319310-67319329 | Msa0179700:intron | 40.0% |
| TTTGTATGCAAGACCATTGG+AGG | - | chr1_4:67319393-67319412 | Msa0179700:CDS | 40.0% | |
| TTGTATGCAAGACCATTGGA+GGG | - | chr1_4:67319394-67319413 | Msa0179700:CDS | 40.0% | |
| !! | CCTTTAAGCTTTGGACCAAA+CGG | + | chr1_4:67319535-67319554 | None:intergenic | 40.0% |
| ! | GAGCCGCAAGAAAATTTTGA+AGG | - | chr1_4:67319794-67319813 | Msa0179700:CDS | 40.0% |
| TTGTCCTCGTAAGCTTAACT+CGG | + | chr1_4:67320000-67320019 | None:intergenic | 40.0% | |
| TTTGATCAGTTGGGCCAATT+GGG | - | chr1_4:67320820-67320839 | Msa0179700:CDS | 40.0% | |
| ! | GCCAATTGGGTTTTCCATTT+AGG | - | chr1_4:67320833-67320852 | Msa0179700:intron | 40.0% |
| GATTGTGGTGAATATGGCTT+TGG | - | chr1_4:67321010-67321029 | Msa0179700:intron | 40.0% | |
| AAGCAGAATAGTATGCGTCT+AGG | + | chr1_4:67321090-67321109 | None:intergenic | 40.0% | |
| GCATACTATTCTGCTTCAGA+TGG | - | chr1_4:67321094-67321113 | Msa0179700:intron | 40.0% | |
| AGTGAGATCAGTTTCAACTG+TGG | - | chr1_4:67321332-67321351 | Msa0179700:intron | 40.0% | |
| GTGAGATCAGTTTCAACTGT+GGG | - | chr1_4:67321333-67321352 | Msa0179700:intron | 40.0% | |
| CAAGTGGTAGCATCAAACTT+GGG | - | chr1_4:67321391-67321410 | Msa0179700:intron | 40.0% | |
| AAGTGGTAGCATCAAACTTG+GGG | - | chr1_4:67321392-67321411 | Msa0179700:intron | 40.0% | |
| GTTGGGCTTACTGGTATATT+AGG | - | chr1_4:67321782-67321801 | Msa0179700:intron | 40.0% | |
| GGTATATTAGGGATTAAGGC+AGG | - | chr1_4:67321794-67321813 | Msa0179700:intron | 40.0% | |
| TTGCTAGCTGATAACACCAT+TGG | - | chr1_4:67321863-67321882 | Msa0179700:intron | 40.0% | |
| TAAGCCTTCTGAGTTACTAG+TGG | - | chr1_4:67322072-67322091 | Msa0179700:CDS | 40.0% | |
| GCAAAAGTGGATGCACAATT+GGG | + | chr1_4:67322156-67322175 | None:intergenic | 40.0% | |
| AGCAAAAGTGGATGCACAAT+TGG | + | chr1_4:67322157-67322176 | None:intergenic | 40.0% | |
| GTGAATGCACCTCTAATTTG+TGG | + | chr1_4:67322193-67322212 | None:intergenic | 40.0% | |
| AACAAAACTGAGAAATGGGC+AGG | - | chr1_4:67322241-67322260 | Msa0179700:CDS | 40.0% | |
| ! | TGCTAAAGTATCATCACCTC+TGG | + | chr1_4:67322288-67322307 | None:intergenic | 40.0% |
| ! | CTTTAGCAGTTTGGAGTCTA+AGG | - | chr1_4:67322300-67322319 | Msa0179700:CDS | 40.0% |
| ACTGGATAATCTTCCTGAGA+AGG | + | chr1_4:67322516-67322535 | None:intergenic | 40.0% | |
| GACCAACCAATTTCTTTGAG+AGG | - | chr1_4:67322568-67322587 | Msa0179700:CDS | 40.0% | |
| AATCACCAAAGCCTATGCAT+TGG | - | chr1_4:67322610-67322629 | Msa0179700:CDS | 40.0% | |
| ! | AAGGTGTTAGAGGGTCAAGT+GGG | + | chr1_4:67318930-67318949 | None:intergenic | 45.0% |
| ! | CGGACAAGGTTGATTTCTGA+AGG | + | chr1_4:67318949-67318968 | None:intergenic | 45.0% |
| GAGGTTGTACTTGTGGTGTT+TGG | + | chr1_4:67318998-67319017 | None:intergenic | 45.0% | |
| GATTGGATGAGAGGTTTGTC+GGG | + | chr1_4:67319048-67319067 | None:intergenic | 45.0% | |
| GATAGCCATGATTGGATGAG+AGG | + | chr1_4:67319057-67319076 | None:intergenic | 45.0% | |
| TGTTGGAGGATAGCCATGAT+TGG | + | chr1_4:67319065-67319084 | None:intergenic | 45.0% | |
| ACTATGACAAAGGCTTGACG+AGG | + | chr1_4:67319114-67319133 | None:intergenic | 45.0% | |
| ATTCCAGTGCCAAAAGCTGA+AGG | - | chr1_4:67319478-67319497 | Msa0179700:CDS | 45.0% | |
| TTCCAGTGCCAAAAGCTGAA+GGG | - | chr1_4:67319479-67319498 | Msa0179700:CDS | 45.0% | |
| ! | TACTCAGTCCCTTCAGCTTT+TGG | + | chr1_4:67319490-67319509 | None:intergenic | 45.0% |
| ! | TCTAAGATGAAGCCACCGTT+TGG | - | chr1_4:67319517-67319536 | Msa0179700:CDS | 45.0% |
| !! | TTAAGCTTTGGACCAAACGG+TGG | + | chr1_4:67319532-67319551 | None:intergenic | 45.0% |
| CCGTTTGGTCCAAAGCTTAA+AGG | - | chr1_4:67319532-67319551 | Msa0179700:CDS | 45.0% | |
| !! | GTAAGTCAACATGATGGACC+TGG | - | chr1_4:67319562-67319581 | Msa0179700:CDS | 45.0% |
| CTTTGATCAGTTGGGCCAAT+TGG | - | chr1_4:67320819-67320838 | Msa0179700:CDS | 45.0% | |
| TCTTCACTTGGGTCTTGGTA+TGG | + | chr1_4:67320968-67320987 | None:intergenic | 45.0% | |
| ACCAAGACCCAAGTGAAGAA+TGG | - | chr1_4:67320969-67320988 | Msa0179700:intron | 45.0% | |
| ACCATTCTTCACTTGGGTCT+TGG | + | chr1_4:67320973-67320992 | None:intergenic | 45.0% | |
| TTGGCAGGACAATCTGTGAA+AGG | + | chr1_4:67321058-67321077 | None:intergenic | 45.0% | |
| AGCATGCTGGTGATATCATG+TGG | - | chr1_4:67321158-67321177 | Msa0179700:intron | 45.0% | |
| TTGTCTGTGGCAGATAACTG+AGG | - | chr1_4:67321287-67321306 | Msa0179700:intron | 45.0% | |
| GATTGGGAGTTTAAGCCAAG+TGG | - | chr1_4:67321375-67321394 | Msa0179700:intron | 45.0% | |
| CCAAGTTTGATGCTACCACT+TGG | + | chr1_4:67321393-67321412 | None:intergenic | 45.0% | |
| CCAAGTGGTAGCATCAAACT+TGG | - | chr1_4:67321390-67321409 | Msa0179700:intron | 45.0% | |
| GTAGCATCAAACTTGGGGTA+TGG | - | chr1_4:67321397-67321416 | Msa0179700:intron | 45.0% | |
| ACTCCACGTCAGTATCTTCA+TGG | - | chr1_4:67321675-67321694 | Msa0179700:intron | 45.0% | |
| TGTCCATGAAGATACTGACG+TGG | + | chr1_4:67321681-67321700 | None:intergenic | 45.0% | |
| ATGGTCATGGTAGACACCAA+TGG | + | chr1_4:67321882-67321901 | None:intergenic | 45.0% | |
| TGGCTTCACCATCAATGTCA+AGG | + | chr1_4:67321925-67321944 | None:intergenic | 45.0% | |
| GCTGATGCAAGAGTCAACAT+TGG | - | chr1_4:67322046-67322065 | Msa0179700:intron | 45.0% | |
| AAAACTGAGAAATGGGCAGG+AGG | - | chr1_4:67322244-67322263 | Msa0179700:CDS | 45.0% | |
| GGATAGGGAGATTGAGAACA+AGG | - | chr1_4:67322452-67322471 | Msa0179700:CDS | 45.0% | |
| TCAAATCCACCACTCAACGT+AGG | + | chr1_4:67322543-67322562 | None:intergenic | 45.0% | |
| ACAACGAAGACCAGTCACAT+AGG | + | chr1_4:67322778-67322797 | None:intergenic | 45.0% | |
| !! | GAAGGTGTTAGAGGGTCAAG+TGG | + | chr1_4:67318931-67318950 | None:intergenic | 50.0% |
| !!! | AGGTGGTGGAGGAAGAGTTT+TGG | + | chr1_4:67319094-67319113 | None:intergenic | 50.0% |
| ATGACAAAGGCTTGACGAGG+TGG | + | chr1_4:67319111-67319130 | None:intergenic | 50.0% | |
| GGCTACCCTATCCTTACCTT+TGG | - | chr1_4:67319216-67319235 | Msa0179700:intron | 50.0% | |
| !! | TACGGTAGGTTGGTTTGGAG+AGG | - | chr1_4:67319315-67319334 | Msa0179700:intron | 50.0% |
| TGACCTTGGATGGTGAAACC+AGG | + | chr1_4:67319583-67319602 | None:intergenic | 50.0% | |
| ATTACCTGACGGAGTGACCT+TGG | + | chr1_4:67319597-67319616 | None:intergenic | 50.0% | |
| TCAGCCGAGTTAAGCTTACG+AGG | - | chr1_4:67319993-67320012 | Msa0179700:intron | 50.0% | |
| !! | TCTAGGAAGACAGCATTGGC+AGG | + | chr1_4:67321073-67321092 | None:intergenic | 50.0% |
| TGCGTCTAGGAAGACAGCAT+TGG | + | chr1_4:67321077-67321096 | None:intergenic | 50.0% | |
| TGTGGCAGATAACTGAGGTC+AGG | - | chr1_4:67321292-67321311 | Msa0179700:intron | 50.0% | |
| ! | ATTGGGTACCGTTTGCTTCC+AGG | - | chr1_4:67322130-67322149 | Msa0179700:CDS | 50.0% |
| CAATTGGGCCTGGAAGCAAA+CGG | + | chr1_4:67322141-67322160 | None:intergenic | 50.0% | |
| TTGGGCCAATGCATAGGCTT+TGG | + | chr1_4:67322618-67322637 | None:intergenic | 50.0% | |
| GTTAGAGGGTCAAGTGGGTG+AGG | + | chr1_4:67318925-67318944 | None:intergenic | 55.0% | |
| ACAAAGGCTTGACGAGGTGG+TGG | + | chr1_4:67319108-67319127 | None:intergenic | 55.0% | |
| TGCAAGACCATTGGAGGGTG+TGG | - | chr1_4:67319399-67319418 | Msa0179700:CDS | 55.0% | |
| ! | GTCCCTTCAGCTTTTGGCAC+TGG | + | chr1_4:67319484-67319503 | None:intergenic | 55.0% |
| GGACCTGGTTTCACCATCCA+AGG | - | chr1_4:67319577-67319596 | Msa0179700:CDS | 55.0% | |
| AGTGGATGCACAATTGGGCC+TGG | + | chr1_4:67322151-67322170 | None:intergenic | 55.0% | |
| CCACTCAACGTAGGCATGAC+TGG | + | chr1_4:67322534-67322553 | None:intergenic | 55.0% | |
| CCAGTCATGCCTACGTTGAG+TGG | - | chr1_4:67322531-67322550 | Msa0179700:CDS | 55.0% | |
| GTCATGCCTACGTTGAGTGG+TGG | - | chr1_4:67322534-67322553 | Msa0179700:CDS | 55.0% | |
| GTGCAGTTGGGCCAATGCAT+AGG | + | chr1_4:67322624-67322643 | None:intergenic | 55.0% | |
| ! | AAGGCTTGACGAGGTGGTGG+AGG | + | chr1_4:67319105-67319124 | None:intergenic | 60.0% |
| ACAGCTGCCACACCCTCCAA+TGG | + | chr1_4:67319409-67319428 | None:intergenic | 60.0% | |
| ! | ATTGGAGGGTGTGGCAGCTG+TGG | - | chr1_4:67319408-67319427 | Msa0179700:CDS | 60.0% |
| CCTGACGGAGTGACCTTGGA+TGG | + | chr1_4:67319593-67319612 | None:intergenic | 60.0% | |
| CCATCCAAGGTCACTCCGTC+AGG | - | chr1_4:67319590-67319609 | Msa0179700:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67318850 | 67322827 | 67318850 | ID=Msa0179700;Name=Msa0179700 |
| chr1_4 | mRNA | 67318850 | 67322827 | 67318850 | ID=Msa0179700-mRNA-1;Parent=Msa0179700;Name=Msa0179700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.6|0.5|1|1|1|6|171|629 |
| chr1_4 | exon | 67318850 | 67319225 | 67318850 | ID=Msa0179700-mRNA-1:exon:22159;Parent=Msa0179700-mRNA-1 |
| chr1_4 | exon | 67319387 | 67319895 | 67319387 | ID=Msa0179700-mRNA-1:exon:22158;Parent=Msa0179700-mRNA-1 |
| chr1_4 | exon | 67320264 | 67320377 | 67320264 | ID=Msa0179700-mRNA-1:exon:22157;Parent=Msa0179700-mRNA-1 |
| chr1_4 | exon | 67320464 | 67320848 | 67320464 | ID=Msa0179700-mRNA-1:exon:22156;Parent=Msa0179700-mRNA-1 |
| chr1_4 | exon | 67322066 | 67322354 | 67322066 | ID=Msa0179700-mRNA-1:exon:22155;Parent=Msa0179700-mRNA-1 |
| chr1_4 | exon | 67322440 | 67322827 | 67322440 | ID=Msa0179700-mRNA-1:exon:22154;Parent=Msa0179700-mRNA-1 |
| chr1_4 | CDS | 67322440 | 67322827 | 67322440 | ID=Msa0179700-mRNA-1:cds;Parent=Msa0179700-mRNA-1 |
| chr1_4 | CDS | 67322066 | 67322354 | 67322066 | ID=Msa0179700-mRNA-1:cds;Parent=Msa0179700-mRNA-1 |
| chr1_4 | CDS | 67320464 | 67320848 | 67320464 | ID=Msa0179700-mRNA-1:cds;Parent=Msa0179700-mRNA-1 |
| chr1_4 | CDS | 67320264 | 67320377 | 67320264 | ID=Msa0179700-mRNA-1:cds;Parent=Msa0179700-mRNA-1 |
| chr1_4 | CDS | 67319387 | 67319895 | 67319387 | ID=Msa0179700-mRNA-1:cds;Parent=Msa0179700-mRNA-1 |
| chr1_4 | CDS | 67319021 | 67319225 | 67319021 | ID=Msa0179700-mRNA-1:cds;Parent=Msa0179700-mRNA-1 |
| chr1_4 | three_prime_UTR | 67318850 | 67319020 | 67318850 | ID=Msa0179700-mRNA-1:three_prime_utr;Parent=Msa0179700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
