Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089780 | sp|Q8W4J3|QSOX1_ARATH | 66.667 | 498 | 154 | 5 | 20 | 514 | 17 | 505 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089780 | G7IAU4 | 94.778 | 517 | 26 | 1 | 1 | 516 | 1 | 517 | 0.0 | 1012 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089780 | Msa0178000 | 0.810392 | 1.179596e-50 | -8.615850e-47 |
| Msa0089780 | Msa0388310 | 0.947261 | 9.474905e-106 | -8.615850e-47 |
| Msa0089780 | Msa0626920 | 0.822072 | 2.880841e-53 | -8.615850e-47 |
| Msa0089780 | Msa1411370 | 0.803120 | 4.055982e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089780 | MtrunA17_Chr1g0208591 | 94.778 | 517 | 26 | 1 | 1 | 516 | 1 | 517 | 0.0 | 1012 |
| Msa0089780 | MtrunA17_Chr2g0300431 | 66.667 | 75 | 19 | 1 | 431 | 505 | 2 | 70 | 2.09e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089780 | AT1G15020.2 | 66.667 | 498 | 154 | 5 | 20 | 514 | 17 | 505 | 0.0 | 701 |
| Msa0089780 | AT2G01270.1 | 68.577 | 506 | 143 | 5 | 1 | 505 | 1 | 491 | 0.0 | 699 |
| Msa0089780 | AT1G15020.3 | 67.076 | 489 | 149 | 5 | 20 | 505 | 17 | 496 | 0.0 | 694 |
| Msa0089780 | AT1G15020.1 | 67.076 | 489 | 149 | 5 | 20 | 505 | 17 | 496 | 0.0 | 694 |
| Msa0089780 | AT2G01270.2 | 71.329 | 429 | 119 | 3 | 78 | 505 | 11 | 436 | 0.0 | 631 |
| Msa0089780 | AT2G01270.3 | 71.329 | 429 | 119 | 3 | 78 | 505 | 11 | 436 | 0.0 | 631 |
Find 158 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTGTCTTTGGGAATT+TGG | 0.066865 | 1_2:+71443082 | None:intergenic |
| GTCATTATCCTATGCTCTTT+TGG | 0.118458 | 1_2:-71445104 | Msa0089780:CDS |
| CAGCTGATCGGTTGCTTAAT+TGG | 0.157947 | 1_2:-71444999 | Msa0089780:CDS |
| TCATTTGTGCTACTTTCTTT+TGG | 0.161617 | 1_2:-71442374 | Msa0089780:three_prime_UTR |
| TTAAAGAACATTTGATTATT+AGG | 0.168649 | 1_2:-71442735 | Msa0089780:exon |
| TTGTGGATTGTTTCAGAAAA+TGG | 0.174937 | 1_2:+71446620 | None:intergenic |
| CAACTACCGCCTACAAATTT+AGG | 0.189883 | 1_2:+71445072 | None:intergenic |
| CGTCATGAATTTATTATATC+TGG | 0.196986 | 1_2:-71446560 | Msa0089780:exon |
| CTCTCAGGTGCCCTGCTTGC+AGG | 0.214008 | 1_2:-71445458 | Msa0089780:intron |
| CCAAATTCCCAAAGACAATT+TGG | 0.238983 | 1_2:-71443082 | Msa0089780:CDS |
| TGACAGCTCATCATCCTTCT+AGG | 0.243759 | 1_2:-71444300 | Msa0089780:CDS |
| ACAAGCGAACCACGAGTTTC+TGG | 0.247398 | 1_2:+71444340 | None:intergenic |
| CAAATTGTCTTTGGGAATTT+GGG | 0.248570 | 1_2:+71443083 | None:intergenic |
| TAATAAATTCATGACGAATA+TGG | 0.267493 | 1_2:+71446567 | None:intergenic |
| AAGAGGTGCCACGTGGATAC+TGG | 0.273103 | 1_2:-71444055 | Msa0089780:CDS |
| GCCTTTCGTTTACCTTGTTA+TGG | 0.288876 | 1_2:+71443141 | None:intergenic |
| TTTGTAGGCCAAATTGTCTT+TGG | 0.294115 | 1_2:+71443074 | None:intergenic |
| TCCTAATTCCACGTTCTCTT+TGG | 0.297956 | 1_2:+71442560 | None:intergenic |
| CCTAGTCAATAATATTATTC+CGG | 0.311856 | 1_2:+71445282 | None:intergenic |
| CTGGTCTTGGCCAAGGTAAC+AGG | 0.324867 | 1_2:+71443037 | None:intergenic |
| GCCAAAGAGAACGTGGAATT+AGG | 0.332745 | 1_2:-71442561 | Msa0089780:three_prime_UTR |
| CTTTGTCCTTCCTGTTACCT+TGG | 0.336453 | 1_2:-71443047 | Msa0089780:CDS |
| GAAGGAAGGGTTAGAAGAGT+AGG | 0.342502 | 1_2:+71446594 | None:intergenic |
| GGTGCCTGTTGGAGCTGCTT+TGG | 0.345145 | 1_2:-71442850 | Msa0089780:CDS |
| CCCTGCTTGCAGGAATTATA+AGG | 0.353470 | 1_2:-71445448 | Msa0089780:intron |
| GAAGGACAAAGTTGCTTTGT+AGG | 0.360673 | 1_2:+71443059 | None:intergenic |
| CAAAACAGCATCGAAATTAG+TGG | 0.363901 | 1_2:+71446396 | None:intergenic |
| CCTTTCGTTTACCTTGTTAT+GGG | 0.364026 | 1_2:+71443142 | None:intergenic |
| TTGGAGCACTTGCGTGCTAC+TGG | 0.374032 | 1_2:-71442803 | Msa0089780:CDS |
| GCTGTCGCTAGCTGTGCCTT+TGG | 0.374778 | 1_2:-71442822 | Msa0089780:CDS |
| TTGTAGGCCAAATTGTCTTT+GGG | 0.377632 | 1_2:+71443075 | None:intergenic |
| GTTAAGAACTTTCAGATTTG+CGG | 0.378804 | 1_2:-71444080 | Msa0089780:CDS |
| GGCCCTCCTCCTAAATTTGT+AGG | 0.394643 | 1_2:-71445081 | Msa0089780:CDS |
| AAGGAAGGGTTAGAAGAGTA+GGG | 0.394666 | 1_2:+71446595 | None:intergenic |
| CTAAATTTGTAGGCGGTAGT+TGG | 0.396623 | 1_2:-71445071 | Msa0089780:CDS |
| GTAAATCTCCAGCACCCTTC+CGG | 0.399033 | 1_2:+71444174 | None:intergenic |
| TTCTACATTCACTTTCTGTA+AGG | 0.399678 | 1_2:-71443412 | Msa0089780:CDS |
| AAGGTTGCAAAGTTATTTAA+CGG | 0.404216 | 1_2:-71445322 | Msa0089780:CDS |
| TTGTAATGTCACAGTTCATT+TGG | 0.408004 | 1_2:-71444690 | Msa0089780:intron |
| GTTAAGAAAAGGACCTGTTC+AGG | 0.410085 | 1_2:+71444615 | None:intergenic |
| TTCAGATGCCGGAAGGGTGC+TGG | 0.417375 | 1_2:-71444182 | Msa0089780:intron |
| CTAGTCAATAATATTATTCC+GGG | 0.420427 | 1_2:+71445283 | None:intergenic |
| AAAGGATAATTAATTCATAA+AGG | 0.422761 | 1_2:+71442440 | None:intergenic |
| TTGTTGAATTCTTTGCCAAT+TGG | 0.424135 | 1_2:-71446348 | Msa0089780:intron |
| GAGATTTACTTACGTTTCAA+TGG | 0.424854 | 1_2:+71446751 | None:intergenic |
| AAGGCTCTGAAGAATTATTA+CGG | 0.426155 | 1_2:-71442975 | Msa0089780:CDS |
| TGCTTCTCTGGTCTTGGCCA+AGG | 0.429258 | 1_2:+71443030 | None:intergenic |
| TATGTGAATGTGATAGATTT+TGG | 0.430231 | 1_2:+71446678 | None:intergenic |
| CCGGAATAATATTATTGACT+AGG | 0.433099 | 1_2:-71445282 | Msa0089780:CDS |
| ATGTCACAGTTCATTTGGTC+TGG | 0.435845 | 1_2:-71444685 | Msa0089780:intron |
| AAATCGCGAGCTTTGTTGAA+TGG | 0.437692 | 1_2:+71443185 | None:intergenic |
| AGGCTCTGAAGAATTATTAC+GGG | 0.441929 | 1_2:-71442974 | Msa0089780:CDS |
| CTTTCAGATTTGCGGAAAAG+AGG | 0.444204 | 1_2:-71444072 | Msa0089780:CDS |
| ACCTTATAATTCCTGCAAGC+AGG | 0.447025 | 1_2:+71445447 | None:intergenic |
| ATTCCGGGATGCACTGCATC+AGG | 0.449922 | 1_2:+71445298 | None:intergenic |
| TTCACTTTCTGTAAGGATTG+AGG | 0.450388 | 1_2:-71443405 | Msa0089780:CDS |
| ATTGCCAAAGCAGCTCCAAC+AGG | 0.450663 | 1_2:+71442846 | None:intergenic |
| ATCAGGGGTTTCCGAGGTAA+AGG | 0.452700 | 1_2:+71442194 | None:intergenic |
| TCTGGCTCTGTTTCTGTGCA+CGG | 0.455216 | 1_2:-71446542 | Msa0089780:CDS |
| AGAACATTTGATTATTAGGA+GGG | 0.457274 | 1_2:-71442731 | Msa0089780:intron |
| CCCTCTGCTCCTCCTATACC+TGG | 0.457623 | 1_2:+71446801 | None:intergenic |
| AGGAGCTTAACAATGCCCTT+TGG | 0.458300 | 1_2:+71442460 | None:intergenic |
| AGAATGAAACCAGAGGCTTT+AGG | 0.462150 | 1_2:-71443543 | Msa0089780:intron |
| CATCTTATTAACCTCCTAGA+AGG | 0.463110 | 1_2:+71444286 | None:intergenic |
| GATCGAACGACCGGGAAAAG+AGG | 0.467659 | 1_2:+71446486 | None:intergenic |
| AGAGAAGCAACAAAATTGAA+TGG | 0.469750 | 1_2:-71443016 | Msa0089780:CDS |
| GATGATGAGCTGTCAAAAGC+TGG | 0.470437 | 1_2:+71444308 | None:intergenic |
| AGAAGAAGAGAACCAGGTAT+AGG | 0.471637 | 1_2:-71446813 | Msa0089780:five_prime_UTR |
| TACAAGGAGAAGGGCATTGT+CGG | 0.472738 | 1_2:-71442933 | Msa0089780:CDS |
| TGTACAGAGTACAATGCTCT+TGG | 0.475294 | 1_2:-71442407 | Msa0089780:three_prime_UTR |
| CGGAATAATATTATTGACTA+GGG | 0.477023 | 1_2:-71445281 | Msa0089780:CDS |
| TAAATTTGTAGGCGGTAGTT+GGG | 0.480960 | 1_2:-71445070 | Msa0089780:CDS |
| TCAATGGCTTAAGACATAGA+TGG | 0.481332 | 1_2:+71446767 | None:intergenic |
| TAATGTATCAGACCCTGAAC+AGG | 0.490651 | 1_2:-71444628 | Msa0089780:intron |
| TTTATTGTCTCTTTCTCCAA+AGG | 0.495997 | 1_2:-71442476 | Msa0089780:three_prime_UTR |
| AACGCTTATTTCTCTGTACA+AGG | 0.497152 | 1_2:-71442949 | Msa0089780:CDS |
| CTCACGAAGGATCGAACGAC+CGG | 0.498198 | 1_2:+71446477 | None:intergenic |
| GTTAACGACAAGGATCAAAC+TGG | 0.498652 | 1_2:-71446454 | Msa0089780:CDS |
| TCAACAACAGCGAAGGTAGC+AGG | 0.500832 | 1_2:+71446364 | None:intergenic |
| AAGACATAGATGGAGAAAAC+AGG | 0.501970 | 1_2:+71446777 | None:intergenic |
| AAGAACATTTGATTATTAGG+AGG | 0.503633 | 1_2:-71442732 | Msa0089780:exon |
| TATTTCTCTGTACAAGGAGA+AGG | 0.507004 | 1_2:-71442943 | Msa0089780:CDS |
| TTATTGTCTCTTTCTCCAAA+GGG | 0.508787 | 1_2:-71442475 | Msa0089780:three_prime_UTR |
| CTTTGGGAATTTGGGATCAC+CGG | 0.511255 | 1_2:+71443091 | None:intergenic |
| CCTTATAATTCCTGCAAGCA+GGG | 0.517713 | 1_2:+71445448 | None:intergenic |
| TCTTCATCTGCGAGGAATGC+CGG | 0.523949 | 1_2:-71443331 | Msa0089780:CDS |
| TCTGTACATTCTATCAAGAA+AGG | 0.524373 | 1_2:+71442422 | None:intergenic |
| AGAGGTGCCACGTGGATACT+GGG | 0.525155 | 1_2:-71444054 | Msa0089780:intron |
| ACAAGGAGAAGGGCATTGTC+GGG | 0.533802 | 1_2:-71442932 | Msa0089780:CDS |
| TTAAGAAAAGGACCTGTTCA+GGG | 0.534466 | 1_2:+71444616 | None:intergenic |
| AATGCAGCCTCATTACGAAA+AGG | 0.537375 | 1_2:-71445341 | Msa0089780:intron |
| AAGGGCATTGTCGGGAATGA+CGG | 0.538404 | 1_2:-71442924 | Msa0089780:CDS |
| ACGAATATGGATCAGAAGGA+AGG | 0.538709 | 1_2:+71446580 | None:intergenic |
| TAGGGTTGATTGTGCGTCAA+AGG | 0.543468 | 1_2:-71445263 | Msa0089780:intron |
| CAAAGAGTACCTAAAGCCTC+TGG | 0.544087 | 1_2:+71443534 | None:intergenic |
| TCCATCAAAACAAATATCGT+TGG | 0.548337 | 1_2:-71446706 | Msa0089780:five_prime_UTR |
| AGAAGAGAACCAGGTATAGG+AGG | 0.553226 | 1_2:-71446810 | Msa0089780:five_prime_UTR |
| GTAGCACGCAAGTGCTCCAA+AGG | 0.553989 | 1_2:+71442806 | None:intergenic |
| CTTTCTGTAAGGATTGAGGA+TGG | 0.555325 | 1_2:-71443401 | Msa0089780:CDS |
| TTTGATGGAGATGAAGGAGA+AGG | 0.556864 | 1_2:+71446720 | None:intergenic |
| AGTCGCGACGAATGCAGTTG+TGG | 0.557017 | 1_2:-71442871 | Msa0089780:CDS |
| ACGACTTACATTACTTTGTG+TGG | 0.557629 | 1_2:-71442255 | Msa0089780:three_prime_UTR |
| GAAGAAGCTTCTCTAGGTAC+CGG | 0.562886 | 1_2:-71443110 | Msa0089780:CDS |
| ACCAGGTATAGGAGGAGCAG+AGG | 0.564065 | 1_2:-71446802 | Msa0089780:five_prime_UTR |
| AATGCAGTTGTGGTGCCTGT+TGG | 0.565048 | 1_2:-71442861 | Msa0089780:CDS |
| TGATATCATCTTAGAGCACA+AGG | 0.569235 | 1_2:-71444451 | Msa0089780:intron |
| GAGCCTTGTAGACCTCGTCC+TGG | 0.570182 | 1_2:+71442991 | None:intergenic |
| GAACCAGGACGAGGTCTACA+AGG | 0.572828 | 1_2:-71442994 | Msa0089780:CDS |
| CCGCCTACAAATTTAGGAGG+AGG | 0.574979 | 1_2:+71445078 | None:intergenic |
| AACTGAAGGAGCCGCACTTG+AGG | 0.575042 | 1_2:-71442901 | Msa0089780:CDS |
| CATGACGAATATGGATCAGA+AGG | 0.576694 | 1_2:+71446576 | None:intergenic |
| GTCGGGAATGACGGAACTGA+AGG | 0.578159 | 1_2:-71442915 | Msa0089780:CDS |
| CGCCTACAAATTTAGGAGGA+GGG | 0.580310 | 1_2:+71445079 | None:intergenic |
| ATTTCTCTGTACAAGGAGAA+GGG | 0.581571 | 1_2:-71442942 | Msa0089780:CDS |
| TGGTTTCATTCTTACTGCCA+CGG | 0.588843 | 1_2:+71443554 | None:intergenic |
| AAACGTAGAAGAAGAGAACC+AGG | 0.591010 | 1_2:-71446819 | Msa0089780:five_prime_UTR |
| GGATCAACAAGCAAACATCC+AGG | 0.593148 | 1_2:-71444978 | Msa0089780:intron |
| CGAATATGGATCAGAAGGAA+GGG | 0.593908 | 1_2:+71446581 | None:intergenic |
| CTACCGCCTACAAATTTAGG+AGG | 0.594232 | 1_2:+71445075 | None:intergenic |
| ACGACCGGGAAAAGAGGAGG+AGG | 0.595904 | 1_2:+71446492 | None:intergenic |
| TTGATGGAGATGAAGGAGAA+GGG | 0.596240 | 1_2:+71446721 | None:intergenic |
| AAATGTTCTTTAAAGAGTGT+AGG | 0.597342 | 1_2:+71442745 | None:intergenic |
| ATCTAGATCAGGGGTTTCCG+AGG | 0.598504 | 1_2:+71442188 | None:intergenic |
| GGACCTGATGCAGTGCATCC+CGG | 0.601129 | 1_2:-71445301 | Msa0089780:CDS |
| TCTTTAAAGAGTGTAGGTGA+TGG | 0.602622 | 1_2:+71442751 | None:intergenic |
| GAACGTGGAATTAGGAATAG+CGG | 0.603279 | 1_2:-71442553 | Msa0089780:three_prime_UTR |
| CCAGGTATAGGAGGAGCAGA+GGG | 0.606698 | 1_2:-71446801 | Msa0089780:five_prime_UTR |
| AGCAAAGAAGAAGCTTCTCT+AGG | 0.612266 | 1_2:-71443116 | Msa0089780:CDS |
| GGAGGGCCCCAAAAGAGCAT+AGG | 0.612333 | 1_2:+71445096 | None:intergenic |
| CTCAACGGCGTAATCATGAT+CGG | 0.616416 | 1_2:+71446426 | None:intergenic |
| TCACGAAGGATCGAACGACC+GGG | 0.617996 | 1_2:+71446478 | None:intergenic |
| GGCGTTCACAGCAAAAGAGT+CGG | 0.618533 | 1_2:-71442782 | Msa0089780:CDS |
| AATTGAATGGAACCAGGACG+AGG | 0.622748 | 1_2:-71443003 | Msa0089780:CDS |
| CGGTCGTTCGATCCTTCGTG+AGG | 0.622957 | 1_2:-71446476 | Msa0089780:CDS |
| CGAACGACCGGGAAAAGAGG+AGG | 0.623560 | 1_2:+71446489 | None:intergenic |
| ATGATGCACGCACAGCTGAT+CGG | 0.624324 | 1_2:-71445011 | Msa0089780:CDS |
| CAGCTCATCATCCTTCTAGG+AGG | 0.625517 | 1_2:-71444297 | Msa0089780:intron |
| CCCATAACAAGGTAAACGAA+AGG | 0.627694 | 1_2:-71443142 | Msa0089780:CDS |
| GTTTCAGGCCAAAGAGAACG+TGG | 0.631653 | 1_2:-71442568 | Msa0089780:intron |
| CAACAAAATTGAATGGAACC+AGG | 0.631843 | 1_2:-71443009 | Msa0089780:CDS |
| CCTTCGTGAGGTTAACGACA+AGG | 0.632180 | 1_2:-71446464 | Msa0089780:CDS |
| AAAGAATTCAACAACAGCGA+AGG | 0.632792 | 1_2:+71446357 | None:intergenic |
| ATTAGTGGCATTTAGCTCAA+CGG | 0.633624 | 1_2:+71446411 | None:intergenic |
| CTTTCGCAGATGTTCTGCCG+TGG | 0.634591 | 1_2:-71443571 | Msa0089780:intron |
| GTTGTGGAGTTCCCATAACA+AGG | 0.635067 | 1_2:-71443153 | Msa0089780:CDS |
| GATGAAGGAGAAGGGTCCGT+CGG | 0.651170 | 1_2:+71446729 | None:intergenic |
| GACTATTAAATCCTCAAGTG+CGG | 0.654925 | 1_2:+71442890 | None:intergenic |
| AGAGAAATAAACCTTTACCT+CGG | 0.659879 | 1_2:-71442205 | Msa0089780:three_prime_UTR |
| AAACGTAAGTAAATCTCCGA+CGG | 0.675243 | 1_2:-71446745 | Msa0089780:five_prime_UTR |
| ATGATAAAACCAGAAACTCG+TGG | 0.677143 | 1_2:-71444349 | Msa0089780:CDS |
| TCATCTGCGAGGAATGCCGG+CGG | 0.684106 | 1_2:-71443328 | Msa0089780:CDS |
| TCACAACTTCTTCATCTGCG+AGG | 0.693802 | 1_2:-71443339 | Msa0089780:CDS |
| CCTCCTCCTAAATTTGTAGG+CGG | 0.694547 | 1_2:-71445078 | Msa0089780:CDS |
| GGCAGTAAGAATGAAACCAG+AGG | 0.705418 | 1_2:-71443550 | Msa0089780:CDS |
| TCTTGGCCAAGGTAACAGGA+AGG | 0.706504 | 1_2:+71443041 | None:intergenic |
| TGCGGAAAAGAGGTGCCACG+TGG | 0.728188 | 1_2:-71444062 | Msa0089780:CDS |
| CCTTGTCGTTAACCTCACGA+AGG | 0.731772 | 1_2:+71446464 | None:intergenic |
| GCTCTTACCCAGTATCCACG+TGG | 0.775751 | 1_2:+71444047 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATTATTATATCA+TGG | + | chr1_2:71444279-71444298 | None:intergenic | 10.0% |
| !!! | TCTAATTTTTCTGATTAAAA+GGG | + | chr1_2:71442828-71442847 | None:intergenic | 15.0% |
| !!! | ATCTAATTTTTCTGATTAAA+AGG | + | chr1_2:71442829-71442848 | None:intergenic | 15.0% |
| !!! | TTGAAAAAACAATTTTCATT+AGG | + | chr1_2:71443422-71443441 | None:intergenic | 15.0% |
| !!! | TAAAACATACAATTTGTTTT+GGG | - | chr1_2:71443620-71443639 | Msa0089780:intron | 15.0% |
| !! | AAAAAAAAAATCAAACATGT+TGG | + | chr1_2:71444449-71444468 | None:intergenic | 15.0% |
| !!! | TATAATGTATTTTCTTCTTT+TGG | - | chr1_2:71444790-71444809 | Msa0089780:intron | 15.0% |
| !! | TTATACTCATAATTACATAA+TGG | - | chr1_2:71445116-71445135 | Msa0089780:CDS | 15.0% |
| !! | TTAAAGAACATTTGATTATT+AGG | - | chr1_2:71446300-71446319 | Msa0089780:intron | 15.0% |
| !!! | TTAAGTTTTGCATAATTAAA+AGG | - | chr1_2:71446358-71446377 | Msa0089780:CDS | 15.0% |
| !!! | TAAGTTTTGCATAATTAAAA+GGG | - | chr1_2:71446359-71446378 | Msa0089780:CDS | 15.0% |
| !! | AAAGGATAATTAATTCATAA+AGG | + | chr1_2:71446598-71446617 | None:intergenic | 15.0% |
| !!! | ATTTTAATTGTATGTTTCGT+TGG | + | chr1_2:71442385-71442404 | None:intergenic | 20.0% |
| !! | TAATAAATTCATGACGAATA+TGG | + | chr1_2:71442471-71442490 | None:intergenic | 20.0% |
| !! | AATTAAAAAGACTAACCAAT+TGG | + | chr1_2:71442705-71442724 | None:intergenic | 20.0% |
| !! | TATATCTTGAATTCTCTTAT+AGG | - | chr1_2:71442742-71442761 | Msa0089780:exon | 20.0% |
| !!! | AAAAGTTCATTTTTTGTGAA+AGG | - | chr1_2:71442772-71442791 | Msa0089780:CDS | 20.0% |
| !! | TCAAGTTATTTATTACAATC+AGG | - | chr1_2:71442850-71442869 | Msa0089780:CDS | 20.0% |
| !!! | CTAAAACATACAATTTGTTT+TGG | - | chr1_2:71443619-71443638 | Msa0089780:intron | 20.0% |
| !! | CATTATAAGAGATCAATAAA+AGG | + | chr1_2:71444777-71444796 | None:intergenic | 20.0% |
| !! | GATTTATACATCATATTATC+AGG | + | chr1_2:71445445-71445464 | None:intergenic | 20.0% |
| !!! | TTGAACAAGTTGATTAAATA+TGG | + | chr1_2:71445549-71445568 | None:intergenic | 20.0% |
| !!! | ACATTTTTGCTTTGTAATTT+TGG | - | chr1_2:71446707-71446726 | Msa0089780:five_prime_UTR | 20.0% |
| !!! | CATTTTTGCTTTGTAATTTT+GGG | - | chr1_2:71446708-71446727 | Msa0089780:five_prime_UTR | 20.0% |
| !! | TATGTGAATGTGATAGATTT+TGG | + | chr1_2:71442360-71442379 | None:intergenic | 25.0% |
| ! | CGTCATGAATTTATTATATC+TGG | - | chr1_2:71442475-71442494 | Msa0089780:three_prime_UTR | 25.0% |
| ! | TAAGAGAATTCAAGATATAC+AGG | + | chr1_2:71442741-71442760 | None:intergenic | 25.0% |
| !!! | TCGGTTTGATTTTTATAATG+TGG | - | chr1_2:71442929-71442948 | Msa0089780:CDS | 25.0% |
| ! | TAGAATCAATTGCATAATGT+TGG | + | chr1_2:71443009-71443028 | None:intergenic | 25.0% |
| ! | TTCTATGAATTGTTAAGTGA+AGG | - | chr1_2:71443024-71443043 | Msa0089780:CDS | 25.0% |
| ! | TCTATGAATTGTTAAGTGAA+GGG | - | chr1_2:71443025-71443044 | Msa0089780:CDS | 25.0% |
| !! | AAAAATTTGATGCAGGTTTT+GGG | + | chr1_2:71443164-71443183 | None:intergenic | 25.0% |
| !! | ATCAAATTTTTGTACACCAT+TGG | - | chr1_2:71443173-71443192 | Msa0089780:CDS | 25.0% |
| !! | TGATCTGGATGTATTTTATA+CGG | - | chr1_2:71443200-71443219 | Msa0089780:intron | 25.0% |
| ! | ATATTTAGCAATGTCTTCAT+CGG | + | chr1_2:71443308-71443327 | None:intergenic | 25.0% |
| !!! | ACATTTGATTTTCAGTTAGA+TGG | + | chr1_2:71443445-71443464 | None:intergenic | 25.0% |
| !! | TTAAAATGCTTGCTGAAAAA+AGG | + | chr1_2:71443646-71443665 | None:intergenic | 25.0% |
| ! | AAGGTTGCAAAGTTATTTAA+CGG | - | chr1_2:71443713-71443732 | Msa0089780:intron | 25.0% |
| ! | CTAGTCAATAATATTATTCC+GGG | + | chr1_2:71443755-71443774 | None:intergenic | 25.0% |
| ! | CCTAGTCAATAATATTATTC+CGG | + | chr1_2:71443756-71443775 | None:intergenic | 25.0% |
| !! | CGGAATAATATTATTGACTA+GGG | - | chr1_2:71443754-71443773 | Msa0089780:intron | 25.0% |
| !!! | CAAGGGTGTTTTTTTATAAA+TGG | + | chr1_2:71443838-71443857 | None:intergenic | 25.0% |
| ! | CATTTATAAAAAAACACCCT+TGG | - | chr1_2:71443836-71443855 | Msa0089780:intron | 25.0% |
| !!! | CATATTTCTGTTCACTTTTT+TGG | - | chr1_2:71443866-71443885 | Msa0089780:intron | 25.0% |
| !!! | ATATCACTTTTCTCTTGTTT+AGG | + | chr1_2:71443993-71444012 | None:intergenic | 25.0% |
| ! | ACATACATTCATTGTTAATG+TGG | - | chr1_2:71444090-71444109 | Msa0089780:CDS | 25.0% |
| ! | AATGTGGTTACAATATTTGT+AGG | - | chr1_2:71444106-71444125 | Msa0089780:CDS | 25.0% |
| !! | ATCATCTGGCTTAAATAAAA+TGG | + | chr1_2:71444135-71444154 | None:intergenic | 25.0% |
| ! | ATGAATTCAAATACATCATC+TGG | + | chr1_2:71444149-71444168 | None:intergenic | 25.0% |
| !! | CAGAACAGATAATTTCTTTT+TGG | - | chr1_2:71444660-71444679 | Msa0089780:CDS | 25.0% |
| ! | AAATGATTTCGTCAAACAAA+CGG | - | chr1_2:71445296-71445315 | Msa0089780:CDS | 25.0% |
| !! | TTGTGAATTTTCTTATTACG+AGG | - | chr1_2:71445414-71445433 | Msa0089780:intron | 25.0% |
| !! | AAATGTTCTTTAAAGAGTGT+AGG | + | chr1_2:71446293-71446312 | None:intergenic | 25.0% |
| ! | AAGAACATTTGATTATTAGG+AGG | - | chr1_2:71446303-71446322 | Msa0089780:intron | 25.0% |
| ! | AGAACATTTGATTATTAGGA+GGG | - | chr1_2:71446304-71446323 | Msa0089780:intron | 25.0% |
| ! | TGCATAATTAAAAGGGATAT+AGG | - | chr1_2:71446366-71446385 | Msa0089780:CDS | 25.0% |
| !! | GTTTTCATAATGTTTGTTTC+AGG | - | chr1_2:71446452-71446471 | Msa0089780:CDS | 25.0% |
| GAGATTTACTTACGTTTCAA+TGG | + | chr1_2:71442287-71442306 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGATGGAGATGA+AGG | + | chr1_2:71442324-71442343 | None:intergenic | 30.0% |
| TCCATCAAAACAAATATCGT+TGG | - | chr1_2:71442329-71442348 | Msa0089780:three_prime_UTR | 30.0% | |
| !!! | ACCAACGATATTTGTTTTGA+TGG | + | chr1_2:71442333-71442352 | None:intergenic | 30.0% |
| ! | TTGTGGATTGTTTCAGAAAA+TGG | + | chr1_2:71442418-71442437 | None:intergenic | 30.0% |
| TTGTTGAATTCTTTGCCAAT+TGG | - | chr1_2:71442687-71442706 | Msa0089780:intron | 30.0% | |
| !!! | TTTGGGATATTTTGGTTGAT+CGG | - | chr1_2:71442910-71442929 | Msa0089780:CDS | 30.0% |
| AGTAGGTAAAAAAAGTAGTG+TGG | - | chr1_2:71443055-71443074 | Msa0089780:CDS | 30.0% | |
| ! | CAAAAATTTGATGCAGGTTT+TGG | + | chr1_2:71443165-71443184 | None:intergenic | 30.0% |
| ! | TTATACCTTTGTTTGCTAAG+TGG | - | chr1_2:71443223-71443242 | Msa0089780:intron | 30.0% |
| GCACATTGGTAGATTTATAA+AGG | - | chr1_2:71443505-71443524 | Msa0089780:intron | 30.0% | |
| ! | CCGGAATAATATTATTGACT+AGG | - | chr1_2:71443753-71443772 | Msa0089780:intron | 30.0% |
| ! | TCATTATCCTATGCTCTTTT+GGG | - | chr1_2:71443932-71443951 | Msa0089780:intron | 30.0% |
| TTGTAATGTCACAGTTCATT+TGG | - | chr1_2:71444345-71444364 | Msa0089780:CDS | 30.0% | |
| AAAAAATCAAACATGTTGGC+AGG | + | chr1_2:71444445-71444464 | None:intergenic | 30.0% | |
| ACAAAACAAAAGGTCAATCA+GGG | + | chr1_2:71444622-71444641 | None:intergenic | 30.0% | |
| AAGAATGAGCACAAAACAAA+AGG | + | chr1_2:71444632-71444651 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTGCTCATTCTTT+TGG | - | chr1_2:71444633-71444652 | Msa0089780:CDS | 30.0% |
| !!! | GGATTATTTTTTTCAGATGC+CGG | - | chr1_2:71444842-71444861 | Msa0089780:intron | 30.0% |
| ! | ACTTGTATCCAACAGATTTT+TGG | - | chr1_2:71444899-71444918 | Msa0089780:intron | 30.0% |
| GTTAAGAACTTTCAGATTTG+CGG | - | chr1_2:71444955-71444974 | Msa0089780:intron | 30.0% | |
| AAACATTTCATACAAAAGCC+AGG | + | chr1_2:71445059-71445078 | None:intergenic | 30.0% | |
| CACGTTGTAGACAATATAAA+TGG | + | chr1_2:71445089-71445108 | None:intergenic | 30.0% | |
| AACAAATAGATGAGTGACTA+AGG | - | chr1_2:71445155-71445174 | Msa0089780:intron | 30.0% | |
| ACAGATACCATTATGGTATA+GGG | + | chr1_2:71445191-71445210 | None:intergenic | 30.0% | |
| AATGATTTCGTCAAACAAAC+GGG | - | chr1_2:71445297-71445316 | Msa0089780:CDS | 30.0% | |
| TATATCGCTGATAAAGAAAC+AGG | + | chr1_2:71445334-71445353 | None:intergenic | 30.0% | |
| GAACTAGAAAACTACATTTG+AGG | + | chr1_2:71445527-71445546 | None:intergenic | 30.0% | |
| ! | TCAAGGAAAGTTGTTGATAA+TGG | + | chr1_2:71445575-71445594 | None:intergenic | 30.0% |
| TTCTACATTCACTTTCTGTA+AGG | - | chr1_2:71445623-71445642 | Msa0089780:intron | 30.0% | |
| ! | ATTTTTACGAGATGTGTTCA+AGG | - | chr1_2:71445731-71445750 | Msa0089780:intron | 30.0% |
| ! | AGATGTGTTCAAGGTATTAA+AGG | - | chr1_2:71445740-71445759 | Msa0089780:intron | 30.0% |
| ! | CAAATTGTCTTTGGGAATTT+GGG | + | chr1_2:71445955-71445974 | None:intergenic | 30.0% |
| !! | ATTCAATTTTGTTGCTTCTC+TGG | + | chr1_2:71446020-71446039 | None:intergenic | 30.0% |
| AGAGAAGCAACAAAATTGAA+TGG | - | chr1_2:71446019-71446038 | Msa0089780:intron | 30.0% | |
| !! | AAGGCTCTGAAGAATTATTA+CGG | - | chr1_2:71446060-71446079 | Msa0089780:intron | 30.0% |
| TTTATTGTCTCTTTCTCCAA+AGG | - | chr1_2:71446559-71446578 | Msa0089780:CDS | 30.0% | |
| TTATTGTCTCTTTCTCCAAA+GGG | - | chr1_2:71446560-71446579 | Msa0089780:exon | 30.0% | |
| TCTGTACATTCTATCAAGAA+AGG | + | chr1_2:71446616-71446635 | None:intergenic | 30.0% | |
| !!! | TCATTTGTGCTACTTTCTTT+TGG | - | chr1_2:71446661-71446680 | Msa0089780:five_prime_UTR | 30.0% |
| !!! | CATTTGTGCTACTTTCTTTT+GGG | - | chr1_2:71446662-71446681 | Msa0089780:five_prime_UTR | 30.0% |
| !!! | ATTTGTGCTACTTTCTTTTG+GGG | - | chr1_2:71446663-71446682 | Msa0089780:five_prime_UTR | 30.0% |
| AGAGAAATAAACCTTTACCT+CGG | - | chr1_2:71446830-71446849 | Msa0089780:five_prime_UTR | 30.0% | |
| AAGACATAGATGGAGAAAAC+AGG | + | chr1_2:71442261-71442280 | None:intergenic | 35.0% | |
| TCAATGGCTTAAGACATAGA+TGG | + | chr1_2:71442271-71442290 | None:intergenic | 35.0% | |
| AAACGTAAGTAAATCTCCGA+CGG | - | chr1_2:71442290-71442309 | Msa0089780:three_prime_UTR | 35.0% | |
| ! | ATTAGTGGCATTTAGCTCAA+CGG | + | chr1_2:71442627-71442646 | None:intergenic | 35.0% |
| ! | CAAAACAGCATCGAAATTAG+TGG | + | chr1_2:71442642-71442661 | None:intergenic | 35.0% |
| AAAGAATTCAACAACAGCGA+AGG | + | chr1_2:71442681-71442700 | None:intergenic | 35.0% | |
| ATGCAAACAATCCAATGCTT+TGG | - | chr1_2:71442892-71442911 | Msa0089780:CDS | 35.0% | |
| TGCAAACAATCCAATGCTTT+GGG | - | chr1_2:71442893-71442912 | Msa0089780:CDS | 35.0% | |
| !!! | TCCAATGCTTTGGGATATTT+TGG | - | chr1_2:71442902-71442921 | Msa0089780:CDS | 35.0% |
| ACCAAAATATCCCAAAGCAT+TGG | + | chr1_2:71442906-71442925 | None:intergenic | 35.0% | |
| AAGTGAAGGGTTCAAAAAGT+AGG | - | chr1_2:71443038-71443057 | Msa0089780:CDS | 35.0% | |
| GTTTCATGTTCTTAACCAGA+CGG | + | chr1_2:71443108-71443127 | None:intergenic | 35.0% | |
| GGTGTACAAAAATTTGATGC+AGG | + | chr1_2:71443171-71443190 | None:intergenic | 35.0% | |
| ACATAATCCTTGATGCACAT+TGG | - | chr1_2:71443491-71443510 | Msa0089780:intron | 35.0% | |
| AAATCTACCAATGTGCATCA+AGG | + | chr1_2:71443501-71443520 | None:intergenic | 35.0% | |
| TTAGTTCAGTGCGTTAATGA+TGG | + | chr1_2:71443673-71443692 | None:intergenic | 35.0% | |
| ! | TTTGCAACCTTTTCGTAATG+AGG | + | chr1_2:71443704-71443723 | None:intergenic | 35.0% |
| ! | AAAAAAACACCCTTGGTGAT+TGG | - | chr1_2:71443843-71443862 | Msa0089780:intron | 35.0% |
| AGAAATATGCCAATCACCAA+GGG | + | chr1_2:71443855-71443874 | None:intergenic | 35.0% | |
| ! | CTCTGTGATAAGTTTTCTGT+TGG | - | chr1_2:71443909-71443928 | Msa0089780:intron | 35.0% |
| ! | GTCATTATCCTATGCTCTTT+TGG | - | chr1_2:71443931-71443950 | Msa0089780:intron | 35.0% |
| ! | CATTATCCTATGCTCTTTTG+GGG | - | chr1_2:71443933-71443952 | Msa0089780:intron | 35.0% |
| TAAATTTGTAGGCGGTAGTT+GGG | - | chr1_2:71443965-71443984 | Msa0089780:intron | 35.0% | |
| ATGTATGTATACCTCATACC+TGG | + | chr1_2:71444078-71444097 | None:intergenic | 35.0% | |
| TTAAGAAAAGGACCTGTTCA+GGG | + | chr1_2:71444422-71444441 | None:intergenic | 35.0% | |
| TGATATCATCTTAGAGCACA+AGG | - | chr1_2:71444584-71444603 | Msa0089780:intron | 35.0% | |
| CACAAAACAAAAGGTCAATC+AGG | + | chr1_2:71444623-71444642 | None:intergenic | 35.0% | |
| ATGATAAAACCAGAAACTCG+TGG | - | chr1_2:71444686-71444705 | Msa0089780:intron | 35.0% | |
| CATCTTATTAACCTCCTAGA+AGG | + | chr1_2:71444752-71444771 | None:intergenic | 35.0% | |
| CATGATTGTTTGTGTGTTTC+TGG | - | chr1_2:71444821-71444840 | Msa0089780:intron | 35.0% | |
| !!! | TATTTTTTTCAGATGCCGGA+AGG | - | chr1_2:71444846-71444865 | Msa0089780:intron | 35.0% |
| !!! | ATTTTTTTCAGATGCCGGAA+GGG | - | chr1_2:71444847-71444866 | Msa0089780:intron | 35.0% |
| TGAGATGACCAAAAATCTGT+TGG | + | chr1_2:71444910-71444929 | None:intergenic | 35.0% | |
| TAGATGAGTGACTAAGGTAA+AGG | - | chr1_2:71445161-71445180 | Msa0089780:intron | 35.0% | |
| AGGAAAACCCTATACCATAA+TGG | - | chr1_2:71445181-71445200 | Msa0089780:intron | 35.0% | |
| CACAGATACCATTATGGTAT+AGG | + | chr1_2:71445192-71445211 | None:intergenic | 35.0% | |
| ATACCATAATGGTATCTGTG+CGG | - | chr1_2:71445192-71445211 | Msa0089780:intron | 35.0% | |
| GGAAATTCTGTTGGATTTGA+AGG | - | chr1_2:71445213-71445232 | Msa0089780:intron | 35.0% | |
| TTCACTTTCTGTAAGGATTG+AGG | - | chr1_2:71445630-71445649 | Msa0089780:intron | 35.0% | |
| ATATGAAGTCAGCATGTGAA+GGG | + | chr1_2:71445811-71445830 | None:intergenic | 35.0% | |
| TATATGAAGTCAGCATGTGA+AGG | + | chr1_2:71445812-71445831 | None:intergenic | 35.0% | |
| ! | CCTTTCGTTTACCTTGTTAT+GGG | + | chr1_2:71445896-71445915 | None:intergenic | 35.0% |
| ! | CCAAATTGTCTTTGGGAATT+TGG | + | chr1_2:71445956-71445975 | None:intergenic | 35.0% |
| CCAAATTCCCAAAGACAATT+TGG | - | chr1_2:71445953-71445972 | Msa0089780:intron | 35.0% | |
| TTGTAGGCCAAATTGTCTTT+GGG | + | chr1_2:71445963-71445982 | None:intergenic | 35.0% | |
| TTTGTAGGCCAAATTGTCTT+TGG | + | chr1_2:71445964-71445983 | None:intergenic | 35.0% | |
| CAACAAAATTGAATGGAACC+AGG | - | chr1_2:71446026-71446045 | Msa0089780:intron | 35.0% | |
| !! | AGGCTCTGAAGAATTATTAC+GGG | - | chr1_2:71446061-71446080 | Msa0089780:intron | 35.0% |
| ! | AACGCTTATTTCTCTGTACA+AGG | - | chr1_2:71446086-71446105 | Msa0089780:intron | 35.0% |
| TATTTCTCTGTACAAGGAGA+AGG | - | chr1_2:71446092-71446111 | Msa0089780:intron | 35.0% | |
| ATTTCTCTGTACAAGGAGAA+GGG | - | chr1_2:71446093-71446112 | Msa0089780:intron | 35.0% | |
| GACTATTAAATCCTCAAGTG+CGG | + | chr1_2:71446148-71446167 | None:intergenic | 35.0% | |
| ! | TCTTTAAAGAGTGTAGGTGA+TGG | + | chr1_2:71446287-71446306 | None:intergenic | 35.0% |
| AGGGATATAGGTATAAGTAG+AGG | - | chr1_2:71446378-71446397 | Msa0089780:CDS | 35.0% | |
| GGGATATAGGTATAAGTAGA+GGG | - | chr1_2:71446379-71446398 | Msa0089780:CDS | 35.0% | |
| ATATAGGTATAAGTAGAGGG+AGG | - | chr1_2:71446382-71446401 | Msa0089780:CDS | 35.0% | |
| TATAGGTATAAGTAGAGGGA+GGG | - | chr1_2:71446383-71446402 | Msa0089780:CDS | 35.0% | |
| !!! | TTTGTGCTACTTTCTTTTGG+GGG | - | chr1_2:71446664-71446683 | Msa0089780:five_prime_UTR | 35.0% |
| ACGACTTACATTACTTTGTG+TGG | - | chr1_2:71446780-71446799 | Msa0089780:five_prime_UTR | 35.0% | |
| AAACGTAGAAGAAGAGAACC+AGG | - | chr1_2:71442216-71442235 | Msa0089780:three_prime_UTR | 40.0% | |
| AGAAGAAGAGAACCAGGTAT+AGG | - | chr1_2:71442222-71442241 | Msa0089780:three_prime_UTR | 40.0% | |
| TTGATGGAGATGAAGGAGAA+GGG | + | chr1_2:71442317-71442336 | None:intergenic | 40.0% | |
| TTTGATGGAGATGAAGGAGA+AGG | + | chr1_2:71442318-71442337 | None:intergenic | 40.0% | |
| ! | GTTAGAAGAGTAGGGTTTTG+TGG | + | chr1_2:71442435-71442454 | None:intergenic | 40.0% |
| AAGGAAGGGTTAGAAGAGTA+GGG | + | chr1_2:71442443-71442462 | None:intergenic | 40.0% | |
| CGAATATGGATCAGAAGGAA+GGG | + | chr1_2:71442457-71442476 | None:intergenic | 40.0% | |
| ACGAATATGGATCAGAAGGA+AGG | + | chr1_2:71442458-71442477 | None:intergenic | 40.0% | |
| CATGACGAATATGGATCAGA+AGG | + | chr1_2:71442462-71442481 | None:intergenic | 40.0% | |
| GTTAACGACAAGGATCAAAC+TGG | - | chr1_2:71442581-71442600 | Msa0089780:intron | 40.0% | |
| TACCACTTACCACTAGTTCA+AGG | - | chr1_2:71442968-71442987 | Msa0089780:CDS | 40.0% | |
| TACCTTGAACTAGTGGTAAG+TGG | + | chr1_2:71442973-71442992 | None:intergenic | 40.0% | |
| TACCACTAGTTCAAGGTAGT+TGG | - | chr1_2:71442975-71442994 | Msa0089780:CDS | 40.0% | |
| TCACATGAATATTGTCCGTC+TGG | - | chr1_2:71443090-71443109 | Msa0089780:CDS | 40.0% | |
| TACACCATTGGTATCTGATC+TGG | - | chr1_2:71443185-71443204 | Msa0089780:CDS | 40.0% | |
| ACATCCAGATCAGATACCAA+TGG | + | chr1_2:71443192-71443211 | None:intergenic | 40.0% | |
| CCTTATAATTCCTGCAAGCA+GGG | + | chr1_2:71443590-71443609 | None:intergenic | 40.0% | |
| ACCTTATAATTCCTGCAAGC+AGG | + | chr1_2:71443591-71443610 | None:intergenic | 40.0% | |
| AATGCAGCCTCATTACGAAA+AGG | - | chr1_2:71443694-71443713 | Msa0089780:intron | 40.0% | |
| CAGAAATATGCCAATCACCA+AGG | + | chr1_2:71443856-71443875 | None:intergenic | 40.0% | |
| CAACTACCGCCTACAAATTT+AGG | + | chr1_2:71443966-71443985 | None:intergenic | 40.0% | |
| CTAAATTTGTAGGCGGTAGT+TGG | - | chr1_2:71443964-71443983 | Msa0089780:intron | 40.0% | |
| TATGTTCCATCAGATGCAAC+AGG | + | chr1_2:71444249-71444268 | None:intergenic | 40.0% | |
| ATGTCACAGTTCATTTGGTC+TGG | - | chr1_2:71444350-71444369 | Msa0089780:CDS | 40.0% | |
| TAATGTATCAGACCCTGAAC+AGG | - | chr1_2:71444407-71444426 | Msa0089780:intron | 40.0% | |
| GTTAAGAAAAGGACCTGTTC+AGG | + | chr1_2:71444423-71444442 | None:intergenic | 40.0% | |
| CATGTTGGCAGGTTAAGAAA+AGG | + | chr1_2:71444434-71444453 | None:intergenic | 40.0% | |
| CTTTCAGATTTGCGGAAAAG+AGG | - | chr1_2:71444963-71444982 | Msa0089780:intron | 40.0% | |
| !! | ACATAATGGATGCGTATGCA+TGG | - | chr1_2:71445130-71445149 | Msa0089780:CDS | 40.0% |
| TTTCCGCACAGATACCATTA+TGG | + | chr1_2:71445198-71445217 | None:intergenic | 40.0% | |
| TATCTGTGCGGAAATTCTGT+TGG | - | chr1_2:71445204-71445223 | Msa0089780:intron | 40.0% | |
| TGGTTTCATTCTTACTGCCA+CGG | + | chr1_2:71445484-71445503 | None:intergenic | 40.0% | |
| AGAATGAAACCAGAGGCTTT+AGG | - | chr1_2:71445492-71445511 | Msa0089780:intron | 40.0% | |
| CCACAGCTGAAAAACAATCA+AGG | + | chr1_2:71445592-71445611 | None:intergenic | 40.0% | |
| !! | CCTTGATTGTTTTTCAGCTG+TGG | - | chr1_2:71445589-71445608 | Msa0089780:intron | 40.0% |
| !! | TGTTTTTCAGCTGTGGCTTA+TGG | - | chr1_2:71445596-71445615 | Msa0089780:intron | 40.0% |
| !! | GTTTTTCAGCTGTGGCTTAT+GGG | - | chr1_2:71445597-71445616 | Msa0089780:intron | 40.0% |
| CTTTCTGTAAGGATTGAGGA+TGG | - | chr1_2:71445634-71445653 | Msa0089780:intron | 40.0% | |
| !! | AAATCGCGAGCTTTGTTGAA+TGG | + | chr1_2:71445853-71445872 | None:intergenic | 40.0% |
| ! | AAGCTCGCGATTTTGCTTTA+TGG | - | chr1_2:71445860-71445879 | Msa0089780:intron | 40.0% |
| ! | GCGATTTTGCTTTATGGTTG+TGG | - | chr1_2:71445866-71445885 | Msa0089780:intron | 40.0% |
| CCCATAACAAGGTAAACGAA+AGG | - | chr1_2:71445893-71445912 | Msa0089780:intron | 40.0% | |
| GCCTTTCGTTTACCTTGTTA+TGG | + | chr1_2:71445897-71445916 | None:intergenic | 40.0% | |
| AGCAAAGAAGAAGCTTCTCT+AGG | - | chr1_2:71445919-71445938 | Msa0089780:intron | 40.0% | |
| ! | GAAGGACAAAGTTGCTTTGT+AGG | + | chr1_2:71445979-71445998 | None:intergenic | 40.0% |
| !! | TTTTGTTGCTTCTCTGGTCT+TGG | + | chr1_2:71446014-71446033 | None:intergenic | 40.0% |
| TCCTAATTCCACGTTCTCTT+TGG | + | chr1_2:71446478-71446497 | None:intergenic | 40.0% | |
| GAACGTGGAATTAGGAATAG+CGG | - | chr1_2:71446482-71446501 | Msa0089780:CDS | 40.0% | |
| TGTACAGAGTACAATGCTCT+TGG | - | chr1_2:71446628-71446647 | Msa0089780:five_prime_UTR | 40.0% | |
| AGAAGAGAACCAGGTATAGG+AGG | - | chr1_2:71442225-71442244 | Msa0089780:three_prime_UTR | 45.0% | |
| GAAGGAAGGGTTAGAAGAGT+AGG | + | chr1_2:71442444-71442463 | None:intergenic | 45.0% | |
| CTCAACGGCGTAATCATGAT+CGG | + | chr1_2:71442612-71442631 | None:intergenic | 45.0% | |
| CACCAACTACCTTGAACTAG+TGG | + | chr1_2:71442980-71442999 | None:intergenic | 45.0% | |
| GCAAGCCACTTAGCAAACAA+AGG | + | chr1_2:71443231-71443250 | None:intergenic | 45.0% | |
| ! | TTTTCCTTCGCTTGTCTCTC+AGG | - | chr1_2:71443562-71443581 | Msa0089780:CDS | 45.0% |
| CCCTGCTTGCAGGAATTATA+AGG | - | chr1_2:71443587-71443606 | Msa0089780:intron | 45.0% | |
| ! | TAGGGTTGATTGTGCGTCAA+AGG | - | chr1_2:71443772-71443791 | Msa0089780:intron | 45.0% |
| CGCCTACAAATTTAGGAGGA+GGG | + | chr1_2:71443959-71443978 | None:intergenic | 45.0% | |
| CCTCCTCCTAAATTTGTAGG+CGG | - | chr1_2:71443957-71443976 | Msa0089780:intron | 45.0% | |
| CTACCGCCTACAAATTTAGG+AGG | + | chr1_2:71443963-71443982 | None:intergenic | 45.0% | |
| CAGCTGATCGGTTGCTTAAT+TGG | - | chr1_2:71444036-71444055 | Msa0089780:intron | 45.0% | |
| GGATCAACAAGCAAACATCC+AGG | - | chr1_2:71444057-71444076 | Msa0089780:CDS | 45.0% | |
| CAAGCAAACATCCAGGTATG+AGG | - | chr1_2:71444064-71444083 | Msa0089780:CDS | 45.0% | |
| AGCATTCCTGTTGCATCTGA+TGG | - | chr1_2:71444240-71444259 | Msa0089780:intron | 45.0% | |
| GATGATGAGCTGTCAAAAGC+TGG | + | chr1_2:71444730-71444749 | None:intergenic | 45.0% | |
| TGACAGCTCATCATCCTTCT+AGG | - | chr1_2:71444735-71444754 | Msa0089780:intron | 45.0% | |
| GGTACAGTTTATCACCGTGA+CGG | - | chr1_2:71445234-71445253 | Msa0089780:intron | 45.0% | |
| CATCTCACCAAACTCGCATA+TGG | + | chr1_2:71445274-71445293 | None:intergenic | 45.0% | |
| CGCTGATAAAGAAACAGGTC+TGG | + | chr1_2:71445329-71445348 | None:intergenic | 45.0% | |
| GGCAGTAAGAATGAAACCAG+AGG | - | chr1_2:71445485-71445504 | Msa0089780:intron | 45.0% | |
| !! | CAAAGAGTACCTAAAGCCTC+TGG | + | chr1_2:71445504-71445523 | None:intergenic | 45.0% |
| TCACAACTTCTTCATCTGCG+AGG | - | chr1_2:71445696-71445715 | Msa0089780:intron | 45.0% | |
| ACATCTCGTAAAAATGCCGC+CGG | + | chr1_2:71445726-71445745 | None:intergenic | 45.0% | |
| TCAGCATGTGAAGGGCTAAA+AGG | + | chr1_2:71445803-71445822 | None:intergenic | 45.0% | |
| GTTGTGGAGTTCCCATAACA+AGG | - | chr1_2:71445882-71445901 | Msa0089780:intron | 45.0% | |
| GAAGAAGCTTCTCTAGGTAC+CGG | - | chr1_2:71445925-71445944 | Msa0089780:intron | 45.0% | |
| ! | CTTTGGGAATTTGGGATCAC+CGG | + | chr1_2:71445947-71445966 | None:intergenic | 45.0% |
| CTTTGTCCTTCCTGTTACCT+TGG | - | chr1_2:71445988-71446007 | Msa0089780:intron | 45.0% | |
| AATTGAATGGAACCAGGACG+AGG | - | chr1_2:71446032-71446051 | Msa0089780:intron | 45.0% | |
| !! | TACAAGGAGAAGGGCATTGT+CGG | - | chr1_2:71446102-71446121 | Msa0089780:intron | 45.0% |
| GCCAAAGAGAACGTGGAATT+AGG | - | chr1_2:71446474-71446493 | Msa0089780:CDS | 45.0% | |
| AGGAGCTTAACAATGCCCTT+TGG | + | chr1_2:71446578-71446597 | None:intergenic | 45.0% | |
| !! | TCTGGCTCTGTTTCTGTGCA+CGG | - | chr1_2:71442493-71442512 | Msa0089780:three_prime_UTR | 50.0% |
| ! | ACTTCCTCCTCCTCTTTTCC+CGG | - | chr1_2:71442539-71442558 | Msa0089780:three_prime_UTR | 50.0% |
| CCTTGTCGTTAACCTCACGA+AGG | + | chr1_2:71442574-71442593 | None:intergenic | 50.0% | |
| CCTTCGTGAGGTTAACGACA+AGG | - | chr1_2:71442571-71442590 | Msa0089780:intron | 50.0% | |
| TCAACAACAGCGAAGGTAGC+AGG | + | chr1_2:71442674-71442693 | None:intergenic | 50.0% | |
| GGCCCTCCTCCTAAATTTGT+AGG | - | chr1_2:71443954-71443973 | Msa0089780:intron | 50.0% | |
| CCGCCTACAAATTTAGGAGG+AGG | + | chr1_2:71443960-71443979 | None:intergenic | 50.0% | |
| ATGATGCACGCACAGCTGAT+CGG | - | chr1_2:71444024-71444043 | Msa0089780:intron | 50.0% | |
| ACAAGCGAACCACGAGTTTC+TGG | + | chr1_2:71444698-71444717 | None:intergenic | 50.0% | |
| CAGCTCATCATCCTTCTAGG+AGG | - | chr1_2:71444738-71444757 | Msa0089780:intron | 50.0% | |
| GTAAATCTCCAGCACCCTTC+CGG | + | chr1_2:71444864-71444883 | None:intergenic | 50.0% | |
| TGACCTGCCATATGCGAGTT+TGG | - | chr1_2:71445264-71445283 | Msa0089780:CDS | 50.0% | |
| TCACCAAACTCGCATATGGC+AGG | + | chr1_2:71445270-71445289 | None:intergenic | 50.0% | |
| TCTTCATCTGCGAGGAATGC+CGG | - | chr1_2:71445704-71445723 | Msa0089780:intron | 50.0% | |
| TCTTGGCCAAGGTAACAGGA+AGG | + | chr1_2:71445997-71446016 | None:intergenic | 50.0% | |
| !! | ACAAGGAGAAGGGCATTGTC+GGG | - | chr1_2:71446103-71446122 | Msa0089780:intron | 50.0% |
| !! | AAGGGCATTGTCGGGAATGA+CGG | - | chr1_2:71446111-71446130 | Msa0089780:intron | 50.0% |
| AATGCAGTTGTGGTGCCTGT+TGG | - | chr1_2:71446174-71446193 | Msa0089780:intron | 50.0% | |
| ATTGCCAAAGCAGCTCCAAC+AGG | + | chr1_2:71446192-71446211 | None:intergenic | 50.0% | |
| GGCGTTCACAGCAAAAGAGT+CGG | - | chr1_2:71446253-71446272 | Msa0089780:intron | 50.0% | |
| GTTTCAGGCCAAAGAGAACG+TGG | - | chr1_2:71446467-71446486 | Msa0089780:CDS | 50.0% | |
| ACCAGGTATAGGAGGAGCAG+AGG | - | chr1_2:71442233-71442252 | Msa0089780:three_prime_UTR | 55.0% | |
| CCAGGTATAGGAGGAGCAGA+GGG | - | chr1_2:71442234-71442253 | Msa0089780:three_prime_UTR | 55.0% | |
| GATGAAGGAGAAGGGTCCGT+CGG | + | chr1_2:71442309-71442328 | None:intergenic | 55.0% | |
| GATCGAACGACCGGGAAAAG+AGG | + | chr1_2:71442552-71442571 | None:intergenic | 55.0% | |
| TCACGAAGGATCGAACGACC+GGG | + | chr1_2:71442560-71442579 | None:intergenic | 55.0% | |
| CTCACGAAGGATCGAACGAC+CGG | + | chr1_2:71442561-71442580 | None:intergenic | 55.0% | |
| ATTCCGGGATGCACTGCATC+AGG | + | chr1_2:71443740-71443759 | None:intergenic | 55.0% | |
| !! | AAGAGGTGCCACGTGGATAC+TGG | - | chr1_2:71444980-71444999 | Msa0089780:CDS | 55.0% |
| !! | AGAGGTGCCACGTGGATACT+GGG | - | chr1_2:71444981-71445000 | Msa0089780:CDS | 55.0% |
| GCTCTTACCCAGTATCCACG+TGG | + | chr1_2:71444991-71445010 | None:intergenic | 55.0% | |
| CTCTGTAGTGCACTTCTGCC+TGG | - | chr1_2:71445038-71445057 | Msa0089780:CDS | 55.0% | |
| CTTTCGCAGATGTTCTGCCG+TGG | - | chr1_2:71445464-71445483 | Msa0089780:intron | 55.0% | |
| !! | CTGGTCTTGGCCAAGGTAAC+AGG | + | chr1_2:71446001-71446020 | None:intergenic | 55.0% |
| !! | TGCTTCTCTGGTCTTGGCCA+AGG | + | chr1_2:71446008-71446027 | None:intergenic | 55.0% |
| GAACCAGGACGAGGTCTACA+AGG | - | chr1_2:71446041-71446060 | Msa0089780:intron | 55.0% | |
| ! | GTCGGGAATGACGGAACTGA+AGG | - | chr1_2:71446120-71446139 | Msa0089780:intron | 55.0% |
| AACTGAAGGAGCCGCACTTG+AGG | - | chr1_2:71446134-71446153 | Msa0089780:intron | 55.0% | |
| AGTCGCGACGAATGCAGTTG+TGG | - | chr1_2:71446164-71446183 | Msa0089780:intron | 55.0% | |
| GTAGCACGCAAGTGCTCCAA+AGG | + | chr1_2:71446232-71446251 | None:intergenic | 55.0% | |
| ! | TTGGAGCACTTGCGTGCTAC+TGG | - | chr1_2:71446232-71446251 | Msa0089780:intron | 55.0% |
| CCCTCTGCTCCTCCTATACC+TGG | + | chr1_2:71442237-71442256 | None:intergenic | 60.0% | |
| ACGACCGGGAAAAGAGGAGG+AGG | + | chr1_2:71442546-71442565 | None:intergenic | 60.0% | |
| CGAACGACCGGGAAAAGAGG+AGG | + | chr1_2:71442549-71442568 | None:intergenic | 60.0% | |
| CGGTCGTTCGATCCTTCGTG+AGG | - | chr1_2:71442559-71442578 | Msa0089780:three_prime_UTR | 60.0% | |
| GGCACCTGAGAGACAAGCGA+AGG | + | chr1_2:71443569-71443588 | None:intergenic | 60.0% | |
| GGACCTGATGCAGTGCATCC+CGG | - | chr1_2:71443734-71443753 | Msa0089780:intron | 60.0% | |
| ! | GGAGGGCCCCAAAAGAGCAT+AGG | + | chr1_2:71443942-71443961 | None:intergenic | 60.0% |
| ! | TTCAGATGCCGGAAGGGTGC+TGG | - | chr1_2:71444853-71444872 | Msa0089780:intron | 60.0% |
| !! | TGCGGAAAAGAGGTGCCACG+TGG | - | chr1_2:71444973-71444992 | Msa0089780:intron | 60.0% |
| CGCATATGGCAGGTCAGCAG+TGG | + | chr1_2:71445260-71445279 | None:intergenic | 60.0% | |
| TCATCTGCGAGGAATGCCGG+CGG | - | chr1_2:71445707-71445726 | Msa0089780:intron | 60.0% | |
| ! | GAGCCTTGTAGACCTCGTCC+TGG | + | chr1_2:71446047-71446066 | None:intergenic | 60.0% |
| GGTGCCTGTTGGAGCTGCTT+TGG | - | chr1_2:71446185-71446204 | Msa0089780:intron | 60.0% | |
| GCTGTCGCTAGCTGTGCCTT+TGG | - | chr1_2:71446213-71446232 | Msa0089780:intron | 60.0% | |
| CTCTCAGGTGCCCTGCTTGC+AGG | - | chr1_2:71443577-71443596 | Msa0089780:intron | 65.0% | |
| CAGGTCAGCAGTGGCCGTCA+CGG | + | chr1_2:71445251-71445270 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71442203 | 71446854 | 71442203 | ID=Msa0089780;Name=Msa0089780 |
| chr1_2 | mRNA | 71442203 | 71446854 | 71442203 | ID=Msa0089780-mRNA-1;Parent=Msa0089780;Name=Msa0089780-mRNA-1;_AED=0.15;_eAED=0.15;_QI=276|1|1|1|0.90|0.83|12|392|516 |
| chr1_2 | exon | 71442203 | 71442583 | 71442203 | ID=Msa0089780-mRNA-1:exon:24644;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71442732 | 71443217 | 71442732 | ID=Msa0089780-mRNA-1:exon:24643;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71443305 | 71443451 | 71443305 | ID=Msa0089780-mRNA-1:exon:24642;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71443544 | 71443584 | 71443544 | ID=Msa0089780-mRNA-1:exon:24641;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71444055 | 71444199 | 71444055 | ID=Msa0089780-mRNA-1:exon:24640;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71444298 | 71444371 | 71444298 | ID=Msa0089780-mRNA-1:exon:24639;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71444452 | 71444520 | 71444452 | ID=Msa0089780-mRNA-1:exon:24638;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71444629 | 71444698 | 71444629 | ID=Msa0089780-mRNA-1:exon:24637;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71444979 | 71445160 | 71444979 | ID=Msa0089780-mRNA-1:exon:24636;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71445264 | 71445356 | 71445264 | ID=Msa0089780-mRNA-1:exon:24635;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71445449 | 71445473 | 71445449 | ID=Msa0089780-mRNA-1:exon:24634;Parent=Msa0089780-mRNA-1 |
| chr1_2 | exon | 71446349 | 71446854 | 71446349 | ID=Msa0089780-mRNA-1:exon:24633;Parent=Msa0089780-mRNA-1 |
| chr1_2 | five_prime_UTR | 71446579 | 71446854 | 71446579 | ID=Msa0089780-mRNA-1:five_prime_utr;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71446349 | 71446578 | 71446349 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71445449 | 71445473 | 71445449 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71445264 | 71445356 | 71445264 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71444979 | 71445160 | 71444979 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71444629 | 71444698 | 71444629 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71444452 | 71444520 | 71444452 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71444298 | 71444371 | 71444298 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71444055 | 71444199 | 71444055 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71443544 | 71443584 | 71443544 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71443305 | 71443451 | 71443305 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | CDS | 71442743 | 71443217 | 71442743 | ID=Msa0089780-mRNA-1:cds;Parent=Msa0089780-mRNA-1 |
| chr1_2 | three_prime_UTR | 71442732 | 71442742 | 71442732 | ID=Msa0089780-mRNA-1:three_prime_utr;Parent=Msa0089780-mRNA-1 |
| chr1_2 | three_prime_UTR | 71442203 | 71442583 | 71442203 | ID=Msa0089780-mRNA-1:three_prime_utr;Parent=Msa0089780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
