AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626920 MtrunA17_Chr4g0003181 100.000 264 0 0 1 264 1 264 0.0 545
Msa0626920 MtrunA17_Chr2g0333211 67.803 264 76 6 1 261 1 258 1.04e-115 332
Msa0626920 MtrunA17_Chr8g0379111 87.755 49 6 0 182 230 1 49 3.66e-23 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626920 AT5G32440.1 48.699 269 128 4 1 264 1 264 9.33e-70 216
Msa0626920 AT5G32440.3 48.327 269 130 3 1 264 1 265 2.22e-68 213
Msa0626920 AT1G80040.1 40.377 265 140 4 1 264 1 248 8.35e-56 180
Msa0626920 AT1G80040.4 45.324 139 76 0 126 264 37 175 6.79e-40 136
Msa0626920 AT5G32440.2 46.561 189 91 4 1 184 1 184 9.09e-32 116
Msa0626920 AT5G02510.2 32.271 251 140 6 20 264 27 253 1.23e-30 115
Msa0626920 AT1G80040.2 37.097 186 99 4 1 185 1 169 8.75e-27 103
Msa0626920 AT5G02510.1 39.568 139 77 3 128 264 46 179 1.33e-26 102
Msa0626920 AT5G02510.3 39.568 139 77 3 128 264 55 188 2.22e-26 102
Msa0626920 AT1G80040.3 35.025 197 99 5 1 185 1 180 1.08e-23 95.1

Find 96 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGAACTTGGATGAAATT+AGG 0.107120 4_3:-6977621 None:intergenic
GGGTTAGGGTTTAGAGAAAT+TGG 0.219430 4_3:-6977600 None:intergenic
ACTAGTTGCTGCCTTTATTA+TGG 0.227028 4_3:-6981625 None:intergenic
CTAGATCGTTGTCACATTCT+TGG 0.233336 4_3:-6979280 None:intergenic
ATTGAACTTGGATGAAATTA+GGG 0.253778 4_3:-6977620 None:intergenic
GGAGCTGCAGGTGGGAATTC+TGG 0.255949 4_3:+6979338 Msa0626920:CDS
TTTAGAGAAATTGGGGATTC+TGG 0.259513 4_3:-6977591 None:intergenic
AATAATAGGCAATATATATA+TGG 0.265461 4_3:-6981817 None:intergenic
CTGTCAAATTCTATCTATAT+CGG 0.283077 4_3:-6981773 None:intergenic
GAGGAAAAGGAGGAGGAAAT+TGG 0.306131 4_3:+6977679 Msa0626920:five_prime_UTR
TGATTTAATTAGAAGATATC+AGG 0.319834 4_3:-6981590 None:intergenic
ACAAATATAAGCGGAATAAT+AGG 0.326514 4_3:-6981831 None:intergenic
ATATATATGGGAATGACTTA+TGG 0.338317 4_3:-6981804 None:intergenic
GGTTAGGGTTTAGAGAAATT+GGG 0.346096 4_3:-6977599 None:intergenic
GCAAATCGAAGTGCTGATTA+AGG 0.357388 4_3:+6980730 Msa0626920:CDS
CTTCTCCTCCTTTATCTAAG+AGG 0.373616 4_3:+6977794 Msa0626920:CDS
TAATTTCATCCAAGTTCAAT+TGG 0.375651 4_3:+6977623 Msa0626920:five_prime_UTR
CCGTAATCTCTTCCCTCATA+TGG 0.383614 4_3:+6977882 Msa0626920:CDS
ACTTGGATGAAATTAGGGTT+AGG 0.389192 4_3:-6977615 None:intergenic
ATCTATATTCCAATTGAACT+TGG 0.402541 4_3:-6977632 None:intergenic
GAGCCTGAATGAGCTTTACT+TGG 0.410114 4_3:+6979316 Msa0626920:CDS
CTCCCAAGTAAAGCTCATTC+AGG 0.411818 4_3:-6979319 None:intergenic
GTTATAGTTTGTGTAGCTTC+TGG 0.415440 4_3:+6981697 Msa0626920:three_prime_UTR
CTTGGATGAAATTAGGGTTA+GGG 0.421309 4_3:-6977614 None:intergenic
CCATATGAGGGAAGAGATTA+CGG 0.421515 4_3:-6977882 None:intergenic
CAACGAAGCCTCTTAGATAA+AGG 0.428199 4_3:-6977802 None:intergenic
ATCCATTCGGCTCCATCTGC+AGG 0.436105 4_3:-6980065 None:intergenic
GAGCTTTACTTGGGAGCTGC+AGG 0.442768 4_3:+6979326 Msa0626920:CDS
CGAGAAATCAATCAGTGAAC+GGG 0.443703 4_3:+6980169 Msa0626920:CDS
TTCTATCTATATCGGGTTGA+CGG 0.443884 4_3:-6981765 None:intergenic
CAACAGAGCAACGGATTTCA+AGG 0.451603 4_3:+6981557 Msa0626920:CDS
ACAGATGAATAACTATGCTT+TGG 0.452596 4_3:+6981514 Msa0626920:intron
TCTATATCATAGTAAATTTG+AGG 0.453555 4_3:-6981932 None:intergenic
TGTGTAGAATGCCATAATAA+AGG 0.460100 4_3:+6981614 Msa0626920:three_prime_UTR
TCAAAGAGAGAAGGAATAGT+TGG 0.466372 4_3:-6977853 None:intergenic
AATCAACGAAGAAGAGGAAA+AGG 0.466917 4_3:+6977666 Msa0626920:five_prime_UTR
CAGTGAACGGGCAAGGGCTG+AGG 0.469163 4_3:+6980181 Msa0626920:CDS
ATAATAGGCAATATATATAT+GGG 0.470356 4_3:-6981816 None:intergenic
TTTGGCAATGCATTTGAAGC+AGG 0.476717 4_3:+6981532 Msa0626920:CDS
AGTACCAACTGGTCCATATG+AGG 0.477018 4_3:-6977895 None:intergenic
ATTGGGGATTCTGGTGATGA+TGG 0.481354 4_3:-6977582 None:intergenic
TGTCAAATTCTATCTATATC+GGG 0.485077 4_3:-6981772 None:intergenic
GGAATAGTTGGAAAACGAAT+CGG 0.490884 4_3:-6977841 None:intergenic
AGCCCGTGCTGCTAGAATGC+TGG 0.490982 4_3:+6980139 Msa0626920:CDS
TCTATCTATATCGGGTTGAC+GGG 0.492502 4_3:-6981764 None:intergenic
TCAGGAAAATTTGATGCTGA+AGG 0.495369 4_3:+6980706 Msa0626920:intron
GTTAGGGTTTAGAGAAATTG+GGG 0.497691 4_3:-6977598 None:intergenic
ATTGCAGCATTTGAAGCAGT+TGG 0.502947 4_3:+6980826 Msa0626920:CDS
CTCTTAGATAAAGGAGGAGA+AGG 0.510276 4_3:-6977793 None:intergenic
AAGAGAAGGGTTGAAAATTG+AGG 0.511627 4_3:-6977554 None:intergenic
CTCCAGCATTCTAGCAGCAC+GGG 0.511638 4_3:-6980141 None:intergenic
TTGAACAGCCTTCCTGCAGA+TGG 0.513895 4_3:+6980053 Msa0626920:CDS
AATCAGAAAGACGCTCGTGC+TGG 0.519052 4_3:-6980784 None:intergenic
AAACTGATATTGAACATTGT+GGG 0.521362 4_3:-6981869 None:intergenic
CAAGAGTTCTGATCTGCTCC+TGG 0.529738 4_3:-6980859 None:intergenic
CTTTACTTGGGAGCTGCAGG+TGG 0.530988 4_3:+6979329 Msa0626920:CDS
ATTGGAATATAGATCGAAGA+AGG 0.532334 4_3:+6977641 Msa0626920:five_prime_UTR
ATCAATCAGTGAACGGGCAA+GGG 0.532900 4_3:+6980175 Msa0626920:CDS
AATCAATCAGTGAACGGGCA+AGG 0.533202 4_3:+6980174 Msa0626920:CDS
GCAGTTGGCGTCTCAATACC+AGG 0.534548 4_3:+6980841 Msa0626920:CDS
GCAGGTAAATTGGAGAATGA+TGG 0.544065 4_3:+6979999 Msa0626920:intron
TGACGGGATAGAATCACTCT+TGG 0.545475 4_3:-6981748 None:intergenic
AAGGAAAATCAACGAAGAAG+AGG 0.549122 4_3:+6977660 Msa0626920:five_prime_UTR
CAAACTGATATTGAACATTG+TGG 0.551797 4_3:-6981870 None:intergenic
GGGGATTCTGGTGATGATGG+TGG 0.557644 4_3:-6977579 None:intergenic
CGAAGAAGAGGAAAAGGAGG+AGG 0.558785 4_3:+6977672 Msa0626920:five_prime_UTR
ATCCACATTGACATCAATCT+CGG 0.564292 4_3:-6979375 None:intergenic
CAACGAAGAAGAGGAAAAGG+AGG 0.569382 4_3:+6977669 Msa0626920:five_prime_UTR
TTTAATTAGAAGATATCAGG+TGG 0.570495 4_3:-6981587 None:intergenic
CTTCCCTCATATGGACCAGT+TGG 0.575644 4_3:+6977891 Msa0626920:CDS
ATTGATGTCAATGTGGATGC+AGG 0.578194 4_3:+6979380 Msa0626920:CDS
TTAGATAAAGGAGGAGAAGG+AGG 0.578473 4_3:-6977790 None:intergenic
AGCCTGAATGAGCTTTACTT+GGG 0.578573 4_3:+6979317 Msa0626920:CDS
CGGAGCTGATCAAAGAGAGA+AGG 0.579956 4_3:-6977862 None:intergenic
CAGGTAAATTGGAGAATGAT+GGG 0.588643 4_3:+6980000 Msa0626920:intron
TCGAGAAATCAATCAGTGAA+CGG 0.595325 4_3:+6980168 Msa0626920:CDS
ACGAATCGGAGAAGTAGAAG+AGG 0.605128 4_3:-6977827 None:intergenic
CCTCCAGCATTCTAGCAGCA+CGG 0.612473 4_3:-6980142 None:intergenic
GTAGAGACAACAAATATAAG+CGG 0.614492 4_3:-6981840 None:intergenic
GGCGACAGATGCTCTTCAGA+AGG 0.617799 4_3:+6980202 Msa0626920:CDS
AAGCAGGCTCAACAGAGCAA+CGG 0.619847 4_3:+6981548 Msa0626920:CDS
ATTCGGCTCCATCTGCAGGA+AGG 0.623660 4_3:-6980061 None:intergenic
CCGTGCTGCTAGAATGCTGG+AGG 0.628538 4_3:+6980142 Msa0626920:CDS
TGATGATGGTGGAAAAGAGA+AGG 0.631551 4_3:-6977568 None:intergenic
GGCTCTAGCATCATCAACAC+TGG 0.633203 4_3:-6980120 None:intergenic
GATGATGGTGGAAAAGAGAA+GGG 0.635228 4_3:-6977567 None:intergenic
TTAATTAGAAGATATCAGGT+GGG 0.635471 4_3:-6981586 None:intergenic
TTTACTTGGGAGCTGCAGGT+GGG 0.636819 4_3:+6979330 Msa0626920:CDS
ACGATGTCTGCTGCTGTGTG+CGG 0.637537 4_3:+6977736 Msa0626920:exon
GGAGCAGATCAGAACTCTTG+AGG 0.638754 4_3:+6980862 Msa0626920:CDS
CGAAGCCTCTTAGATAAAGG+AGG 0.640265 4_3:-6977799 None:intergenic
GTACCAACTGGTCCATATGA+GGG 0.643655 4_3:-6977894 None:intergenic
TTCCTGCAGATGGAGCCGAA+TGG 0.648905 4_3:+6980063 Msa0626920:CDS
AACAGAGCAACGGATTTCAA+GGG 0.652217 4_3:+6981558 Msa0626920:CDS
TCGAATTCGATAGTCAGCAT+CGG 0.654412 4_3:+6977709 Msa0626920:five_prime_UTR
ATCCGAGATTGATGTCAATG+TGG 0.731294 4_3:+6979373 Msa0626920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATTCAAAAAATAAAA+AGG - chr4_3:6977941-6977960 None:intergenic 10.0%
!!! TTGTTTTATTATTTGAATTT+GGG + chr4_3:6978243-6978262 Msa0626920:intron 10.0%
!!! TAATTGTTGTTTTTTTAATA+AGG + chr4_3:6978991-6979010 Msa0626920:intron 10.0%
!!! AATTGTTGTTTTTTTAATAA+GGG + chr4_3:6978992-6979011 Msa0626920:intron 10.0%
!! AAAGTTAAAATATTAATACA+CGG - chr4_3:6979240-6979259 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTTTG+TGG - chr4_3:6979694-6979713 None:intergenic 10.0%
!! TCAAAAAATAAAAAGGAAAA+TGG - chr4_3:6977934-6977953 None:intergenic 15.0%
!!! GTTGTTTTATTATTTGAATT+TGG + chr4_3:6978242-6978261 Msa0626920:intron 15.0%
!!! GTTTAGTTGTTATTTAATTT+CGG + chr4_3:6978411-6978430 Msa0626920:intron 15.0%
!!! TTTAGTTGTTATTTAATTTC+GGG + chr4_3:6978412-6978431 Msa0626920:intron 15.0%
!! AAGTTAAAATATTAATACAC+GGG - chr4_3:6979239-6979258 None:intergenic 15.0%
!!! GTATTAATATTTTAACTTTC+AGG + chr4_3:6979241-6979260 Msa0626920:intron 15.0%
!! ATAATAGGCAATATATATAT+GGG - chr4_3:6981819-6981838 None:intergenic 15.0%
!! AATAATAGGCAATATATATA+TGG - chr4_3:6981820-6981839 None:intergenic 15.0%
!!! TTTATGTTTAGTTTAATGCA+TGG + chr4_3:6978051-6978070 Msa0626920:intron 20.0%
!!! TAATTGTTGTTTTTCTAACA+AGG + chr4_3:6978153-6978172 Msa0626920:intron 20.0%
!!! AATTGTTGTTTTTCTAACAA+GGG + chr4_3:6978154-6978173 Msa0626920:intron 20.0%
!! GACAAAAATAATTTGAATTG+AGG + chr4_3:6978287-6978306 Msa0626920:intron 20.0%
!!! TGAAGATGTTTTTTTTATGA+GGG + chr4_3:6978345-6978364 Msa0626920:intron 20.0%
!!! TGTATTACTATTTTGTGATA+TGG + chr4_3:6979861-6979880 Msa0626920:intron 20.0%
!! CTAAATATGTGTTTATAAGT+GGG + chr4_3:6980536-6980555 Msa0626920:intron 20.0%
!! TAAATATGTGTTTATAAGTG+GGG + chr4_3:6980537-6980556 Msa0626920:intron 20.0%
!!! ATTCTTTTAAAAACGCATTT+AGG + chr4_3:6980759-6980778 Msa0626920:CDS 20.0%
!!! TGTGTGAATTTTTTAAAGAT+AGG + chr4_3:6980965-6980984 Msa0626920:intron 20.0%
!! TGATTTAATTAGAAGATATC+AGG - chr4_3:6981593-6981612 None:intergenic 20.0%
!! AAAAAGAGAACATAATTAAC+TGG - chr4_3:6981656-6981675 None:intergenic 20.0%
!! TCTATATCATAGTAAATTTG+AGG - chr4_3:6981935-6981954 None:intergenic 20.0%
! ATTGAACTTGGATGAAATTA+GGG - chr4_3:6977623-6977642 None:intergenic 25.0%
! AATTGAACTTGGATGAAATT+AGG - chr4_3:6977624-6977643 None:intergenic 25.0%
! TAATTTCATCCAAGTTCAAT+TGG + chr4_3:6977623-6977642 Msa0626920:five_prime_UTR 25.0%
! ATCTATATTCCAATTGAACT+TGG - chr4_3:6977635-6977654 None:intergenic 25.0%
!!! CTGAAGATGTTTTTTTTATG+AGG + chr4_3:6978344-6978363 Msa0626920:intron 25.0%
! GACAATTTGAATTGAGTAAT+TGG + chr4_3:6978509-6978528 Msa0626920:intron 25.0%
!!! GTGATTGTTGTTTTCTAATA+AGG + chr4_3:6978583-6978602 Msa0626920:intron 25.0%
!! AAAAAAGACCTGATTTTGAA+TGG + chr4_3:6978753-6978772 Msa0626920:intron 25.0%
! AGTCCATACAAGTTAATAAA+AGG - chr4_3:6978795-6978814 None:intergenic 25.0%
! GTTTGACGGTAATTAAATAA+CGG + chr4_3:6978816-6978835 Msa0626920:intron 25.0%
!! GTTTGTTTGTTTCTTATGAA+GGG + chr4_3:6979014-6979033 Msa0626920:intron 25.0%
!! TGAATGAGATATTTTGTGTT+TGG + chr4_3:6979085-6979104 Msa0626920:intron 25.0%
!!! CTACTCTTTTTATTTAGTTC+AGG + chr4_3:6979129-6979148 Msa0626920:intron 25.0%
!!! TCTTTTTATTTAGTTCAGGA+GGG + chr4_3:6979133-6979152 Msa0626920:intron 25.0%
! GTAATGAAAGAGATATTTGA+TGG + chr4_3:6979155-6979174 Msa0626920:intron 25.0%
! CAAATAAATGTTTGGCTAAT+TGG + chr4_3:6979418-6979437 Msa0626920:intron 25.0%
!! TTTCATATTTTGCGAAACAA+TGG + chr4_3:6979482-6979501 Msa0626920:intron 25.0%
! AGAGGATGAAAGAAATAAAA+GGG - chr4_3:6979603-6979622 None:intergenic 25.0%
! AAGAGGATGAAAGAAATAAA+AGG - chr4_3:6979604-6979623 None:intergenic 25.0%
!!! TTTTTTGTGGTAAATAGAGA+GGG - chr4_3:6979681-6979700 None:intergenic 25.0%
!!! TTTTTTTGTGGTAAATAGAG+AGG - chr4_3:6979682-6979701 None:intergenic 25.0%
!! ATTTTATATACACTCCTCTT+TGG + chr4_3:6979780-6979799 Msa0626920:intron 25.0%
! AACAAAAAAGTCAATCCATT+CGG - chr4_3:6980081-6980100 None:intergenic 25.0%
! CCACTTATAAACACATATTT+AGG - chr4_3:6980538-6980557 None:intergenic 25.0%
! CCTAAATATGTGTTTATAAG+TGG + chr4_3:6980535-6980554 Msa0626920:intron 25.0%
! AAATATGTGTTTATAAGTGG+GGG + chr4_3:6980538-6980557 Msa0626920:intron 25.0%
!! CCATTAATAGTGTTGAAATT+GGG - chr4_3:6980606-6980625 None:intergenic 25.0%
!! ACCATTAATAGTGTTGAAAT+TGG - chr4_3:6980607-6980626 None:intergenic 25.0%
! TTCAACACTATTAATGGTTT+AGG + chr4_3:6980609-6980628 Msa0626920:intron 25.0%
!! CACAAGATGTTTAAATTTTC+AGG + chr4_3:6980688-6980707 Msa0626920:intron 25.0%
! AATTTGACAGTGAACAAAAA+AGG - chr4_3:6980904-6980923 None:intergenic 25.0%
! AAAATTCACACAAAGTTACA+AGG - chr4_3:6980957-6980976 None:intergenic 25.0%
! TTTGTAGATTTAAAAGTGAG+TGG + chr4_3:6981213-6981232 Msa0626920:intron 25.0%
! TTGTAGATTTAAAAGTGAGT+GGG + chr4_3:6981214-6981233 Msa0626920:intron 25.0%
! TTAATTAGAAGATATCAGGT+GGG - chr4_3:6981589-6981608 None:intergenic 25.0%
! TTTAATTAGAAGATATCAGG+TGG - chr4_3:6981590-6981609 None:intergenic 25.0%
! TGTCAAATTCTATCTATATC+GGG - chr4_3:6981775-6981794 None:intergenic 25.0%
! CTGTCAAATTCTATCTATAT+CGG - chr4_3:6981776-6981795 None:intergenic 25.0%
! ATATATATGGGAATGACTTA+TGG - chr4_3:6981807-6981826 None:intergenic 25.0%
! ACAAATATAAGCGGAATAAT+AGG - chr4_3:6981834-6981853 None:intergenic 25.0%
! AAACTGATATTGAACATTGT+GGG - chr4_3:6981872-6981891 None:intergenic 25.0%
ATTGGAATATAGATCGAAGA+AGG + chr4_3:6977641-6977660 Msa0626920:five_prime_UTR 30.0%
AAATGAAAATGAGTACCAAC+TGG - chr4_3:6977909-6977928 None:intergenic 30.0%
AGTTGTATCTGAGTTTAAGA+TGG + chr4_3:6978121-6978140 Msa0626920:intron 30.0%
! TGAGTTTAAGATGGTTAGAT+TGG + chr4_3:6978130-6978149 Msa0626920:intron 30.0%
AATTGAGCAACTGATTATGT+TGG + chr4_3:6978207-6978226 Msa0626920:intron 30.0%
TTGAAGATGGTTAGATTAGA+TGG + chr4_3:6978560-6978579 Msa0626920:intron 30.0%
TGAAGATGGTTAGATTAGAT+GGG + chr4_3:6978561-6978580 Msa0626920:intron 30.0%
TACAATTTCAGAGTGCAAAT+TGG - chr4_3:6978694-6978713 None:intergenic 30.0%
!! AATTTGCACTCTGAAATTGT+AGG + chr4_3:6978693-6978712 Msa0626920:intron 30.0%
!!! GGTCCTTTTATTAACTTGTA+TGG + chr4_3:6978789-6978808 Msa0626920:intron 30.0%
TTGCCTATTTGCAAATTTCA+AGG + chr4_3:6978845-6978864 Msa0626920:intron 30.0%
! GGTTTGTTTGTTTCTTATGA+AGG + chr4_3:6979013-6979032 Msa0626920:intron 30.0%
! ATATTTTGTGTTTGGTTGAG+CGG + chr4_3:6979093-6979112 Msa0626920:intron 30.0%
!! CTCTTTTTATTTAGTTCAGG+AGG + chr4_3:6979132-6979151 Msa0626920:intron 30.0%
ATGAAAGAGATATTTGATGG+AGG + chr4_3:6979158-6979177 Msa0626920:intron 30.0%
TGAAAGAGATATTTGATGGA+GGG + chr4_3:6979159-6979178 Msa0626920:intron 30.0%
AGCTACAAGATTGAAAACAT+TGG - chr4_3:6979548-6979567 None:intergenic 30.0%
! AATGTTTTCAATCTTGTAGC+TGG + chr4_3:6979547-6979566 Msa0626920:intron 30.0%
GAGGATGAAAGAAATAAAAG+GGG - chr4_3:6979602-6979621 None:intergenic 30.0%
TATAAAATGTGCATGTGTGT+GGG - chr4_3:6979768-6979787 None:intergenic 30.0%
ATATAAAATGTGCATGTGTG+TGG - chr4_3:6979769-6979788 None:intergenic 30.0%
! ATAAAAAAGTGTGACCAAAG+AGG - chr4_3:6979797-6979816 None:intergenic 30.0%
! ACTATTTTGTGATATGGACA+AGG + chr4_3:6979867-6979886 Msa0626920:intron 30.0%
! CTATTTTGTGATATGGACAA+GGG + chr4_3:6979868-6979887 Msa0626920:intron 30.0%
AATGATCTGTTGACAAGTAA+TGG + chr4_3:6979916-6979935 Msa0626920:intron 30.0%
!!! CTTTTTTGTTCGAGAAATGA+TGG + chr4_3:6980091-6980110 Msa0626920:CDS 30.0%
!! TTAAAACTGTTTTTCCTAGC+AGG + chr4_3:6980255-6980274 Msa0626920:intron 30.0%
AACAAGGATTGTTGAACTAT+CGG + chr4_3:6980303-6980322 Msa0626920:intron 30.0%
!!! TTTTGAGACTTGTTTGTTTG+AGG + chr4_3:6980343-6980362 Msa0626920:intron 30.0%
TATTTGTGAAGATAATACCG+TGG + chr4_3:6980454-6980473 Msa0626920:intron 30.0%
ATTTGTGAAGATAATACCGT+GGG + chr4_3:6980455-6980474 Msa0626920:intron 30.0%
CCCAATTTCAACACTATTAA+TGG + chr4_3:6980603-6980622 Msa0626920:intron 30.0%
TTAAGATACATACTCAACTG+AGG - chr4_3:6980665-6980684 None:intergenic 30.0%
ACAGTGAACAAAAAAGGATA+AGG - chr4_3:6980898-6980917 None:intergenic 30.0%
!!! TATTGACTCCTTTTAACCAA+GGG - chr4_3:6980932-6980951 None:intergenic 30.0%
!!! ATATTGACTCCTTTTAACCA+AGG - chr4_3:6980933-6980952 None:intergenic 30.0%
!! ATTTTGACACCGTTCTTTAA+CGG + chr4_3:6980993-6981012 Msa0626920:intron 30.0%
CTTCATGATGATAATTTCAG+AGG + chr4_3:6981061-6981080 Msa0626920:intron 30.0%
TTGCTTGTCTGAATATAACA+AGG - chr4_3:6981382-6981401 None:intergenic 30.0%
ACAAGCAAATTAGTTAAGTG+TGG + chr4_3:6981394-6981413 Msa0626920:intron 30.0%
CAAGCAAATTAGTTAAGTGT+GGG + chr4_3:6981395-6981414 Msa0626920:intron 30.0%
ACAGATGAATAACTATGCTT+TGG + chr4_3:6981514-6981533 Msa0626920:intron 30.0%
TGTGTAGAATGCCATAATAA+AGG + chr4_3:6981614-6981633 Msa0626920:three_prime_UTR 30.0%
! GTTCTCTTTTTATCACGAAA+AGG + chr4_3:6981665-6981684 Msa0626920:three_prime_UTR 30.0%
GTAGAGACAACAAATATAAG+CGG - chr4_3:6981843-6981862 None:intergenic 30.0%
CAAACTGATATTGAACATTG+TGG - chr4_3:6981873-6981892 None:intergenic 30.0%
AAGAGAAGGGTTGAAAATTG+AGG - chr4_3:6977557-6977576 None:intergenic 35.0%
TTTAGAGAAATTGGGGATTC+TGG - chr4_3:6977594-6977613 None:intergenic 35.0%
GTTAGGGTTTAGAGAAATTG+GGG - chr4_3:6977601-6977620 None:intergenic 35.0%
GGTTAGGGTTTAGAGAAATT+GGG - chr4_3:6977602-6977621 None:intergenic 35.0%
CTTGGATGAAATTAGGGTTA+GGG - chr4_3:6977617-6977636 None:intergenic 35.0%
ACTTGGATGAAATTAGGGTT+AGG - chr4_3:6977618-6977637 None:intergenic 35.0%
AAGGAAAATCAACGAAGAAG+AGG + chr4_3:6977660-6977679 Msa0626920:five_prime_UTR 35.0%
AATCAACGAAGAAGAGGAAA+AGG + chr4_3:6977666-6977685 Msa0626920:five_prime_UTR 35.0%
GGAATAGTTGGAAAACGAAT+CGG - chr4_3:6977844-6977863 None:intergenic 35.0%
TCAAAGAGAGAAGGAATAGT+TGG - chr4_3:6977856-6977875 None:intergenic 35.0%
! AGTTGTATCTGAGTTGAAGA+TGG + chr4_3:6978547-6978566 Msa0626920:intron 35.0%
!! ACTTGTATGGACTAGTTTGA+CGG + chr4_3:6978802-6978821 Msa0626920:intron 35.0%
CCACCTTGAAATTTGCAAAT+AGG - chr4_3:6978851-6978870 None:intergenic 35.0%
CCTATTTGCAAATTTCAAGG+TGG + chr4_3:6978848-6978867 Msa0626920:intron 35.0%
TTGTCTACTTGCAAAGTTCA+AGG + chr4_3:6978892-6978911 Msa0626920:intron 35.0%
! TTGTTTCTTATGAAGGGAAG+AGG + chr4_3:6979020-6979039 Msa0626920:intron 35.0%
TGTTTCTTATGAAGGGAAGA+GGG + chr4_3:6979021-6979040 Msa0626920:intron 35.0%
!!! TGAGAGGTATTTTTGATGGA+GGG + chr4_3:6979044-6979063 Msa0626920:intron 35.0%
ATCCACATTGACATCAATCT+CGG - chr4_3:6979378-6979397 None:intergenic 35.0%
!! GGTGTTGGCAAATAAATGTT+TGG + chr4_3:6979410-6979429 Msa0626920:intron 35.0%
TTTGTTGACCATTTGGACTT+TGG + chr4_3:6979446-6979465 Msa0626920:intron 35.0%
TGAAAACTCCAAAGTCCAAA+TGG - chr4_3:6979457-6979476 None:intergenic 35.0%
ATAAAATGTGCATGTGTGTG+GGG - chr4_3:6979767-6979786 None:intergenic 35.0%
GAAAAACTGTGCAGGTAAAT+TGG + chr4_3:6979989-6980008 Msa0626920:intron 35.0%
CAGGTAAATTGGAGAATGAT+GGG + chr4_3:6980000-6980019 Msa0626920:intron 35.0%
TCGAGAAATCAATCAGTGAA+CGG + chr4_3:6980168-6980187 Msa0626920:CDS 35.0%
AATGTCCTTTGTGAAGAACA+AGG + chr4_3:6980287-6980306 Msa0626920:intron 35.0%
ACAATCCTTGTTCTTCACAA+AGG - chr4_3:6980295-6980314 None:intergenic 35.0%
TTTGTGAAGATAATACCGTG+GGG + chr4_3:6980456-6980475 Msa0626920:intron 35.0%
CTAACTCATCCTTACAAAAC+TGG - chr4_3:6980582-6980601 None:intergenic 35.0%
!! CAGTTTTGTAAGGATGAGTT+AGG + chr4_3:6980580-6980599 Msa0626920:intron 35.0%
ATACTCAACTGAGGATAACA+GGG - chr4_3:6980656-6980675 None:intergenic 35.0%
TCAGGAAAATTTGATGCTGA+AGG + chr4_3:6980706-6980725 Msa0626920:intron 35.0%
ATTGTTCACCCTTGGTTAAA+AGG + chr4_3:6980921-6980940 Msa0626920:intron 35.0%
! TTTTGACACCGTTCTTTAAC+GGG + chr4_3:6980994-6981013 Msa0626920:intron 35.0%
AAAGAGTGATGTGACTACAT+AGG + chr4_3:6981026-6981045 Msa0626920:intron 35.0%
!! CAGAGGTTCATATTGATTCT+CGG + chr4_3:6981078-6981097 Msa0626920:intron 35.0%
!! GGTTCTGAAGAACATTTGAT+AGG + chr4_3:6981099-6981118 Msa0626920:intron 35.0%
AATGTACAAAAGCTGAAGCT+TGG - chr4_3:6981446-6981465 None:intergenic 35.0%
ACTAGTTGCTGCCTTTATTA+TGG - chr4_3:6981628-6981647 None:intergenic 35.0%
! GTTATAGTTTGTGTAGCTTC+TGG + chr4_3:6981697-6981716 Msa0626920:three_prime_UTR 35.0%
!! TTCTATCTATATCGGGTTGA+CGG - chr4_3:6981768-6981787 None:intergenic 35.0%
!! GATGATGGTGGAAAAGAGAA+GGG - chr4_3:6977570-6977589 None:intergenic 40.0%
!! TGATGATGGTGGAAAAGAGA+AGG - chr4_3:6977571-6977590 None:intergenic 40.0%
GGGTTAGGGTTTAGAGAAAT+TGG - chr4_3:6977603-6977622 None:intergenic 40.0%
TCGAATTCGATAGTCAGCAT+CGG + chr4_3:6977709-6977728 Msa0626920:five_prime_UTR 40.0%
TTAGATAAAGGAGGAGAAGG+AGG - chr4_3:6977793-6977812 None:intergenic 40.0%
CTCTTAGATAAAGGAGGAGA+AGG - chr4_3:6977796-6977815 None:intergenic 40.0%
CTTCTCCTCCTTTATCTAAG+AGG + chr4_3:6977794-6977813 Msa0626920:CDS 40.0%
CAACGAAGCCTCTTAGATAA+AGG - chr4_3:6977805-6977824 None:intergenic 40.0%
CCATATGAGGGAAGAGATTA+CGG - chr4_3:6977885-6977904 None:intergenic 40.0%
TTGCTAATCAACGATGACGA+CGG + chr4_3:6978438-6978457 Msa0626920:intron 40.0%
! ACGACGGTGATGTATTTTTC+TGG + chr4_3:6978454-6978473 Msa0626920:intron 40.0%
! CGACGGTGATGTATTTTTCT+GGG + chr4_3:6978455-6978474 Msa0626920:intron 40.0%
! TCTGGGATAGACGAATTTGT+CGG + chr4_3:6978472-6978491 Msa0626920:intron 40.0%
TTGCCTATTCGCAACTTTCA+GGG - chr4_3:6978735-6978754 None:intergenic 40.0%
TTTGCCTATTCGCAACTTTC+AGG - chr4_3:6978736-6978755 None:intergenic 40.0%
! GACCTGATTTTGAATGGTGT+CGG + chr4_3:6978759-6978778 Msa0626920:intron 40.0%
! ACCTGATTTTGAATGGTGTC+GGG + chr4_3:6978760-6978779 Msa0626920:intron 40.0%
CAAGGTGGCAATTCAAAATC+AGG + chr4_3:6978863-6978882 Msa0626920:intron 40.0%
!!! AGGGTGAGAGGTATTTTTGA+TGG + chr4_3:6979040-6979059 Msa0626920:intron 40.0%
!!! GTGAGAGGTATTTTTGATGG+AGG + chr4_3:6979043-6979062 Msa0626920:intron 40.0%
!!! GAGAGGTATTTTTGATGGAG+GGG + chr4_3:6979045-6979064 Msa0626920:intron 40.0%
!!! AGAGGTATTTTTGATGGAGG+GGG + chr4_3:6979046-6979065 Msa0626920:intron 40.0%
CTAGATCGTTGTCACATTCT+TGG - chr4_3:6979283-6979302 None:intergenic 40.0%
AGCCTGAATGAGCTTTACTT+GGG + chr4_3:6979317-6979336 Msa0626920:CDS 40.0%
ATCCGAGATTGATGTCAATG+TGG + chr4_3:6979373-6979392 Msa0626920:CDS 40.0%
ATTGATGTCAATGTGGATGC+AGG + chr4_3:6979380-6979399 Msa0626920:CDS 40.0%
AATGTGGATGCAGGTATGAT+TGG + chr4_3:6979389-6979408 Msa0626920:intron 40.0%
! GGATGTGTTTGTTGACCATT+TGG + chr4_3:6979439-6979458 Msa0626920:intron 40.0%
CGAAACAATGGTCTCAGATT+TGG + chr4_3:6979494-6979513 Msa0626920:intron 40.0%
! GGTCTCAGATTTGGTAGTAT+TGG + chr4_3:6979503-6979522 Msa0626920:intron 40.0%
! GTTTTCAATCTTGTAGCTGG+AGG + chr4_3:6979550-6979569 Msa0626920:intron 40.0%
GAGAGAGATAGGTTACTAAG+AGG - chr4_3:6979621-6979640 None:intergenic 40.0%
TAAAATGTGCATGTGTGTGG+GGG - chr4_3:6979766-6979785 None:intergenic 40.0%
ACACTAGTAATGTGCTCATG+AGG - chr4_3:6979844-6979863 None:intergenic 40.0%
CGTGTCAAGTGTCAATATCT+CGG - chr4_3:6979964-6979983 None:intergenic 40.0%
ACGTGTTTGAAAAACTGTGC+AGG + chr4_3:6979981-6980000 Msa0626920:intron 40.0%
GCAGGTAAATTGGAGAATGA+TGG + chr4_3:6979999-6980018 Msa0626920:intron 40.0%
CGAGAAATCAATCAGTGAAC+GGG + chr4_3:6980169-6980188 Msa0626920:CDS 40.0%
AGGATTGTTGAACTATCGGT+AGG + chr4_3:6980307-6980326 Msa0626920:intron 40.0%
AAGAATGTACTGTTGAGTGC+TGG + chr4_3:6980366-6980385 Msa0626920:intron 40.0%
ACCTCACATCAGATAAGAGA+TGG + chr4_3:6980512-6980531 Msa0626920:intron 40.0%
CATACTCAACTGAGGATAAC+AGG - chr4_3:6980657-6980676 None:intergenic 40.0%
!! GCAAATCGAAGTGCTGATTA+AGG + chr4_3:6980730-6980749 Msa0626920:CDS 40.0%
! ATTGCAGCATTTGAAGCAGT+TGG + chr4_3:6980826-6980845 Msa0626920:CDS 40.0%
ACTGTCAAATTGTTCACCCT+TGG + chr4_3:6980913-6980932 Msa0626920:intron 40.0%
CCTTCTATCCCGTTAAAGAA+CGG - chr4_3:6981005-6981024 None:intergenic 40.0%
CGTTCTTTAACGGGATAGAA+GGG + chr4_3:6981003-6981022 Msa0626920:intron 40.0%
TCGTGTATTTCTCTCCCTTT+GGG + chr4_3:6981157-6981176 Msa0626920:intron 40.0%
ATTCAGAGAAGACCAGCAAA+TGG - chr4_3:6981246-6981265 None:intergenic 40.0%
TTCTGCTTTGGTTGAAAACG+AGG + chr4_3:6981291-6981310 Msa0626920:intron 40.0%
CAGATGCAATAACTGAGCAT+TGG - chr4_3:6981322-6981341 None:intergenic 40.0%
! TTTGGCAATGCATTTGAAGC+AGG + chr4_3:6981532-6981551 Msa0626920:CDS 40.0%
! AACAGAGCAACGGATTTCAA+GGG + chr4_3:6981558-6981577 Msa0626920:CDS 40.0%
!! TCTATCTATATCGGGTTGAC+GGG - chr4_3:6981767-6981786 None:intergenic 40.0%
! ATTGGGGATTCTGGTGATGA+TGG - chr4_3:6977585-6977604 None:intergenic 45.0%
CAACGAAGAAGAGGAAAAGG+AGG + chr4_3:6977669-6977688 Msa0626920:five_prime_UTR 45.0%
GAGGAAAAGGAGGAGGAAAT+TGG + chr4_3:6977679-6977698 Msa0626920:five_prime_UTR 45.0%
CGAAGCCTCTTAGATAAAGG+AGG - chr4_3:6977802-6977821 None:intergenic 45.0%
ACGAATCGGAGAAGTAGAAG+AGG - chr4_3:6977830-6977849 None:intergenic 45.0%
CCGTAATCTCTTCCCTCATA+TGG + chr4_3:6977882-6977901 Msa0626920:CDS 45.0%
GTACCAACTGGTCCATATGA+GGG - chr4_3:6977897-6977916 None:intergenic 45.0%
AGTACCAACTGGTCCATATG+AGG - chr4_3:6977898-6977917 None:intergenic 45.0%
!! CACTCTGAAATTGTAGGCGT+CGG + chr4_3:6978699-6978718 Msa0626920:intron 45.0%
! GCAACTTTCAGGGGTGTAAA+TGG - chr4_3:6978725-6978744 None:intergenic 45.0%
TGCCTATTCGCAACTTTCAG+GGG - chr4_3:6978734-6978753 None:intergenic 45.0%
! TTGAATGGTGTCGGGCAATT+TGG + chr4_3:6978768-6978787 Msa0626920:intron 45.0%
AATTCGTCCCCTGAAGTTGT+AGG - chr4_3:6978933-6978952 None:intergenic 45.0%
TACAACTTCAGGGGACGAAT+TGG + chr4_3:6978932-6978951 Msa0626920:intron 45.0%
ACAACTTCAGGGGACGAATT+GGG + chr4_3:6978933-6978952 Msa0626920:intron 45.0%
GAGCCTGAATGAGCTTTACT+TGG + chr4_3:6979316-6979335 Msa0626920:CDS 45.0%
CTCCCAAGTAAAGCTCATTC+AGG - chr4_3:6979322-6979341 None:intergenic 45.0%
GATGCAGGTATGATTGGTGT+TGG + chr4_3:6979395-6979414 Msa0626920:intron 45.0%
AGAGAGAGAGAGAGAGAGAT+AGG - chr4_3:6979632-6979651 None:intergenic 45.0%
AATCAATCAGTGAACGGGCA+AGG + chr4_3:6980174-6980193 Msa0626920:CDS 45.0%
ATCAATCAGTGAACGGGCAA+GGG + chr4_3:6980175-6980194 Msa0626920:CDS 45.0%
ACATTCACTTGTGACCTGCT+AGG - chr4_3:6980272-6980291 None:intergenic 45.0%
!! GTTGAGTGCTGGTTTAGTTG+AGG + chr4_3:6980377-6980396 Msa0626920:intron 45.0%
AAGATAATACCGTGGGGAGA+GGG + chr4_3:6980462-6980481 Msa0626920:intron 45.0%
CTCTTATCTGATGTGAGGTG+AGG - chr4_3:6980511-6980530 None:intergenic 45.0%
GCCATCTCTTATCTGATGTG+AGG - chr4_3:6980516-6980535 None:intergenic 45.0%
!! CCTTACAAAACTGGCTTGTG+AGG - chr4_3:6980573-6980592 None:intergenic 45.0%
!! CCTCACAAGCCAGTTTTGTA+AGG + chr4_3:6980570-6980589 Msa0626920:intron 45.0%
CCGTTCTTTAACGGGATAGA+AGG + chr4_3:6981002-6981021 Msa0626920:intron 45.0%
GTCGTGTATTTCTCTCCCTT+TGG + chr4_3:6981156-6981175 Msa0626920:intron 45.0%
CGTGTATTTCTCTCCCTTTG+GGG + chr4_3:6981158-6981177 Msa0626920:intron 45.0%
AAATAACTCCCAGCCCCAAA+GGG - chr4_3:6981174-6981193 None:intergenic 45.0%
AAAATAACTCCCAGCCCCAA+AGG - chr4_3:6981175-6981194 None:intergenic 45.0%
!! TTTGGGGCTGGGAGTTATTT+TGG + chr4_3:6981174-6981193 Msa0626920:intron 45.0%
AGTGGGAAGTTTCCATTTGC+TGG + chr4_3:6981231-6981250 Msa0626920:intron 45.0%
! CTGAATCTCCTTCCTTTTGC+CGG + chr4_3:6981260-6981279 Msa0626920:intron 45.0%
! TGAATCTCCTTCCTTTTGCC+GGG + chr4_3:6981261-6981280 Msa0626920:intron 45.0%
CTTTGGTTGAAAACGAGGAG+AGG + chr4_3:6981296-6981315 Msa0626920:intron 45.0%
! CAACAGAGCAACGGATTTCA+AGG + chr4_3:6981557-6981576 Msa0626920:CDS 45.0%
TGACGGGATAGAATCACTCT+TGG - chr4_3:6981751-6981770 None:intergenic 45.0%
!!! TTTTACATATAAAATAAATT+TGG + chr4_3:6981354-6981373 Msa0626920:intron 5.0%
CGAAGAAGAGGAAAAGGAGG+AGG + chr4_3:6977672-6977691 Msa0626920:five_prime_UTR 50.0%
CGGAGCTGATCAAAGAGAGA+AGG - chr4_3:6977865-6977884 None:intergenic 50.0%
CTTCCCTCATATGGACCAGT+TGG + chr4_3:6977891-6977910 Msa0626920:CDS 50.0%
CACCCCTGAAAGTTGCGAAT+AGG + chr4_3:6978729-6978748 Msa0626920:intron 50.0%
GCCCGACACCATTCAAAATC+AGG - chr4_3:6978764-6978783 None:intergenic 50.0%
CAACTTCAGGGGACGAATTG+GGG + chr4_3:6978934-6978953 Msa0626920:intron 50.0%
TATGAAGGGAAGAGGGTGAG+AGG + chr4_3:6979028-6979047 Msa0626920:intron 50.0%
! TTTTGATGGAGGGGGTGAGT+AGG + chr4_3:6979054-6979073 Msa0626920:intron 50.0%
TTTACTTGGGAGCTGCAGGT+GGG + chr4_3:6979330-6979349 Msa0626920:CDS 50.0%
GGACAAGGGCTGTGAAGTAT+AGG + chr4_3:6979882-6979901 Msa0626920:intron 50.0%
TTGAACAGCCTTCCTGCAGA+TGG + chr4_3:6980053-6980072 Msa0626920:CDS 50.0%
! GGCTCTAGCATCATCAACAC+TGG - chr4_3:6980123-6980142 None:intergenic 50.0%
GAAGATAATACCGTGGGGAG+AGG + chr4_3:6980461-6980480 Msa0626920:intron 50.0%
!! CAAAACTGGCTTGTGAGGTG+AGG - chr4_3:6980568-6980587 None:intergenic 50.0%
AATCAGAAAGACGCTCGTGC+TGG - chr4_3:6980787-6980806 None:intergenic 50.0%
! CAAGAGTTCTGATCTGCTCC+TGG - chr4_3:6980862-6980881 None:intergenic 50.0%
GGAGCAGATCAGAACTCTTG+AGG + chr4_3:6980862-6980881 Msa0626920:CDS 50.0%
!! TATTTCTCTCCCTTTGGGGC+TGG + chr4_3:6981162-6981181 Msa0626920:intron 50.0%
!! ATTTCTCTCCCTTTGGGGCT+GGG + chr4_3:6981163-6981182 Msa0626920:intron 50.0%
AGAATTGAGTGCCCGGCAAA+AGG - chr4_3:6981275-6981294 None:intergenic 50.0%
CCAAAGCAGAATTGAGTGCC+CGG - chr4_3:6981282-6981301 None:intergenic 50.0%
AAGCAGGCTCAACAGAGCAA+CGG + chr4_3:6981548-6981567 Msa0626920:CDS 50.0%
!! GGGGATTCTGGTGATGATGG+TGG - chr4_3:6977582-6977601 None:intergenic 55.0%
ACGATGTCTGCTGCTGTGTG+CGG + chr4_3:6977736-6977755 Msa0626920:exon 55.0%
TCCCCTGAAGTTGTAGGCGT+CGG - chr4_3:6978927-6978946 None:intergenic 55.0%
GAGCTTTACTTGGGAGCTGC+AGG + chr4_3:6979326-6979345 Msa0626920:CDS 55.0%
CTTTACTTGGGAGCTGCAGG+TGG + chr4_3:6979329-6979348 Msa0626920:CDS 55.0%
ATTCGGCTCCATCTGCAGGA+AGG - chr4_3:6980064-6980083 None:intergenic 55.0%
TTCCTGCAGATGGAGCCGAA+TGG + chr4_3:6980063-6980082 Msa0626920:CDS 55.0%
ATCCATTCGGCTCCATCTGC+AGG - chr4_3:6980068-6980087 None:intergenic 55.0%
CTCCAGCATTCTAGCAGCAC+GGG - chr4_3:6980144-6980163 None:intergenic 55.0%
CCTCCAGCATTCTAGCAGCA+CGG - chr4_3:6980145-6980164 None:intergenic 55.0%
GGCGACAGATGCTCTTCAGA+AGG + chr4_3:6980202-6980221 Msa0626920:CDS 55.0%
ATAATACCGTGGGGAGAGGG+TGG + chr4_3:6980465-6980484 Msa0626920:intron 55.0%
GCAGTTGGCGTCTCAATACC+AGG + chr4_3:6980841-6980860 Msa0626920:CDS 55.0%
TTGAGTGCCCGGCAAAAGGA+AGG - chr4_3:6981271-6981290 None:intergenic 55.0%
CCGGGCACTCAATTCTGCTT+TGG + chr4_3:6981279-6981298 Msa0626920:intron 55.0%
TGCCCGACGCCTACAACTTC+AGG + chr4_3:6978921-6978940 Msa0626920:intron 60.0%
GCCCGACGCCTACAACTTCA+GGG + chr4_3:6978922-6978941 Msa0626920:intron 60.0%
CCCCTGAAGTTGTAGGCGTC+GGG - chr4_3:6978926-6978945 None:intergenic 60.0%
CCCGACGCCTACAACTTCAG+GGG + chr4_3:6978923-6978942 Msa0626920:intron 60.0%
GGAGCTGCAGGTGGGAATTC+TGG + chr4_3:6979338-6979357 Msa0626920:CDS 60.0%
TGGGGGTGAGAGAGAGTCGA+TGG - chr4_3:6979749-6979768 None:intergenic 60.0%
! AGCCCGTGCTGCTAGAATGC+TGG + chr4_3:6980139-6980158 Msa0626920:CDS 60.0%
! CCGTGCTGCTAGAATGCTGG+AGG + chr4_3:6980142-6980161 Msa0626920:CDS 60.0%
TTTGCTCCACCCTCTCCCCA+CGG - chr4_3:6980474-6980493 None:intergenic 60.0%
CAGTGAACGGGCAAGGGCTG+AGG + chr4_3:6980181-6980200 Msa0626920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 6977544 6981973 6977544 ID=Msa0626920;Name=Msa0626920
chr4_3 mRNA 6977544 6981973 6977544 ID=Msa0626920-mRNA-1;Parent=Msa0626920;Name=Msa0626920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=195|1|1|1|1|1|5|369|264
chr4_3 exon 6977544 6977912 6977544 ID=Msa0626920-mRNA-1:exon:1986;Parent=Msa0626920-mRNA-1
chr4_3 exon 6979263 6979401 6979263 ID=Msa0626920-mRNA-1:exon:1987;Parent=Msa0626920-mRNA-1
chr4_3 exon 6980003 6980223 6980003 ID=Msa0626920-mRNA-1:exon:1988;Parent=Msa0626920-mRNA-1
chr4_3 exon 6980710 6980883 6980710 ID=Msa0626920-mRNA-1:exon:1989;Parent=Msa0626920-mRNA-1
chr4_3 exon 6981518 6981973 6981518 ID=Msa0626920-mRNA-1:exon:1990;Parent=Msa0626920-mRNA-1
chr4_3 five_prime_UTR 6977544 6977738 6977544 ID=Msa0626920-mRNA-1:five_prime_utr;Parent=Msa0626920-mRNA-1
chr4_3 CDS 6977739 6977912 6977739 ID=Msa0626920-mRNA-1:cds;Parent=Msa0626920-mRNA-1
chr4_3 CDS 6979263 6979401 6979263 ID=Msa0626920-mRNA-1:cds;Parent=Msa0626920-mRNA-1
chr4_3 CDS 6980003 6980223 6980003 ID=Msa0626920-mRNA-1:cds;Parent=Msa0626920-mRNA-1
chr4_3 CDS 6980710 6980883 6980710 ID=Msa0626920-mRNA-1:cds;Parent=Msa0626920-mRNA-1
chr4_3 CDS 6981518 6981604 6981518 ID=Msa0626920-mRNA-1:cds;Parent=Msa0626920-mRNA-1
chr4_3 three_prime_UTR 6981605 6981973 6981605 ID=Msa0626920-mRNA-1:three_prime_utr;Parent=Msa0626920-mRNA-1
Gene Sequence

>Msa0626920

ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTTGAAGAACAACTTCCTCCTTCTCCTCCTTTATCTAAGAGGCTTCGTTGTTCCTCTTCTACTTCTCCGATTCGTTTTCCAACTATTCCTTCTCTCTTTGATCAGCTCCGTAATCTCTTCCCTCATATGGACCAGTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGACAACGATCTAGATGCTGCTATCAAGAGCCTGAATGAGCTTTACTTGGGAGCTGCAGGTGGGAATTCTGGAACTGCTGAAGAATCCGAGATTGATGTCAATGTGGATGCAGGTAAATTGGAGAATGATGGGAATGCTTCTGCTTCTGAGAATCAGTCTACTTTGAACAGCCTTCCTGCAGATGGAGCCGAATGGATTGACTTTTTTGTTCGAGAAATGATGGTTGCTACCAGTGTTGATGATGCTAGAGCCCGTGCTGCTAGAATGCTGGAGGTTCTCGAGAAATCAATCAGTGAACGGGCAAGGGCTGAGGCGACAGATGCTCTTCAGAAGGAAAATTTGATGCTGAAGGAGCAAATCGAAGTGCTGATTAAGGAGAAAAATTCTTTTAAAAACGCATTTAGGATCCAGCACGAGCGTCTTTCTGATTATGATAATAAGAATCAAGAATTGCAGCATTTGAAGCAGTTGGCGTCTCAATACCAGGAGCAGATCAGAACTCTTGAGATGAATAACTATGCTTTGGCAATGCATTTGAAGCAGGCTCAACAGAGCAACGGATTTCAAGGGCATTTCCCACCTGATATCTTCTAA

Protein sequence

>Msa0626920

MSAAVCGSKRSFFEEQLPPSPPLSKRLRCSSSTSPIRFPTIPSLFDQLRNLFPHMDQLVLERALQECDNDLDAAIKSLNELYLGAAGGNSGTAEESEIDVNVDAGKLENDGNASASENQSTLNSLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERARAEATDALQKENLMLKEQIEVLIKEKNSFKNAFRIQHERLSDYDNKNQELQHLKQLASQYQEQIRTLEMNNYALAMHLKQAQQSNGFQGHFPPDIF*