Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388310 | XP_003592564.1 | 94.778 | 517 | 26 | 1 | 1 | 516 | 1 | 517 | 0.0 | 1012 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388310 | sp|Q8W4J3|QSOX1_ARATH | 66.667 | 498 | 154 | 5 | 20 | 514 | 17 | 505 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388310 | G7IAU4 | 94.778 | 517 | 26 | 1 | 1 | 516 | 1 | 517 | 0.0 | 1012 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037280 | Msa0388310 | 0.800889 | 1.165855e-48 | -8.615850e-47 |
| Msa0052780 | Msa0388310 | 0.802310 | 5.961211e-49 | -8.615850e-47 |
| Msa0067590 | Msa0388310 | -0.800944 | 1.136269e-48 | -8.615850e-47 |
| Msa0081610 | Msa0388310 | -0.819516 | 1.114762e-52 | -8.615850e-47 |
| Msa0089780 | Msa0388310 | 0.947261 | 9.474905e-106 | -8.615850e-47 |
| Msa0097570 | Msa0388310 | 0.801853 | 7.401570e-49 | -8.615850e-47 |
| Msa0112880 | Msa0388310 | -0.813160 | 2.946585e-51 | -8.615850e-47 |
| Msa0127350 | Msa0388310 | -0.802076 | 6.659066e-49 | -8.615850e-47 |
| Msa0127910 | Msa0388310 | -0.806505 | 7.964061e-50 | -8.615850e-47 |
| Msa0168770 | Msa0388310 | -0.816707 | 4.812378e-52 | -8.615850e-47 |
| Msa0173950 | Msa0388310 | -0.826782 | 2.245890e-54 | -8.615850e-47 |
| Msa0178000 | Msa0388310 | 0.827164 | 1.819439e-54 | -8.615850e-47 |
| Msa0388310 | Msa0390590 | -0.807256 | 5.522905e-50 | -8.615850e-47 |
| Msa0388310 | Msa0590620 | -0.801910 | 7.204137e-49 | -8.615850e-47 |
| Msa0388310 | Msa0626920 | 0.844911 | 5.638709e-59 | -8.615850e-47 |
| Msa0388310 | Msa1121720 | -0.801897 | 7.247182e-49 | -8.615850e-47 |
| Msa0388310 | Msa1411370 | 0.826989 | 2.003584e-54 | -8.615850e-47 |
| Msa0388310 | Msa1439860 | 0.826457 | 2.685043e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388310 | MtrunA17_Chr1g0208591 | 94.778 | 517 | 26 | 1 | 1 | 516 | 1 | 517 | 0.0 | 1012 |
| Msa0388310 | MtrunA17_Chr2g0300431 | 66.667 | 75 | 19 | 1 | 431 | 505 | 2 | 70 | 2.09e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388310 | AT1G15020.2 | 66.667 | 498 | 154 | 5 | 20 | 514 | 17 | 505 | 0.0 | 701 |
| Msa0388310 | AT2G01270.1 | 68.577 | 506 | 143 | 5 | 1 | 505 | 1 | 491 | 0.0 | 699 |
| Msa0388310 | AT1G15020.3 | 67.076 | 489 | 149 | 5 | 20 | 505 | 17 | 496 | 0.0 | 694 |
| Msa0388310 | AT1G15020.1 | 67.076 | 489 | 149 | 5 | 20 | 505 | 17 | 496 | 0.0 | 694 |
| Msa0388310 | AT2G01270.2 | 71.329 | 429 | 119 | 3 | 78 | 505 | 11 | 436 | 0.0 | 631 |
| Msa0388310 | AT2G01270.3 | 71.329 | 429 | 119 | 3 | 78 | 505 | 11 | 436 | 0.0 | 631 |
Find 157 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTGTCTTTGGGAATT+TGG | 0.066865 | 3_1:-92741311 | None:intergenic |
| CGTCATGAATTTATTATATT+TGG | 0.087902 | 3_1:+92737833 | Msa0388310:exon |
| GTCATTATCCTATGCTCTTT+TGG | 0.118458 | 3_1:+92739289 | Msa0388310:CDS |
| CAGCTGATCGGTTGCTTAAT+TGG | 0.157947 | 3_1:+92739394 | Msa0388310:CDS |
| TCATTTGTGCTACTTTCTTT+TGG | 0.161617 | 3_1:+92742019 | Msa0388310:three_prime_UTR |
| TTAAAGAACATTTGATTATT+AGG | 0.168649 | 3_1:+92741658 | Msa0388310:exon |
| TTGTGGATTGTTTCAGAAAA+TGG | 0.174937 | 3_1:-92737773 | None:intergenic |
| CAACTACCGCCTACAAATTT+AGG | 0.189883 | 3_1:-92739321 | None:intergenic |
| CTCTCAGGTGCCCTGCTTGC+AGG | 0.214008 | 3_1:+92738935 | Msa0388310:intron |
| CCAAATTCCCAAAGACAATT+TGG | 0.238983 | 3_1:+92741311 | Msa0388310:CDS |
| TGACAGCTCATCATCCTTCT+AGG | 0.243759 | 3_1:+92740093 | Msa0388310:CDS |
| ACAAGCGAACCACGAGTTTC+TGG | 0.247398 | 3_1:-92740053 | None:intergenic |
| CAAATTGTCTTTGGGAATTT+GGG | 0.248570 | 3_1:-92741310 | None:intergenic |
| TAATAAATTCATGACGAATA+TGG | 0.260673 | 3_1:-92737826 | None:intergenic |
| AAGAGGTGCCACGTGGATAC+TGG | 0.273103 | 3_1:+92740338 | Msa0388310:CDS |
| GCCTTTCGTTTACCTTGTTA+TGG | 0.288876 | 3_1:-92741252 | None:intergenic |
| TTTGTAGGCCAAATTGTCTT+TGG | 0.294115 | 3_1:-92741319 | None:intergenic |
| TCCTAATTCCACGTTCTCTT+TGG | 0.297956 | 3_1:-92741833 | None:intergenic |
| CCTAGTCAATAATATTATTC+CGG | 0.311856 | 3_1:-92739111 | None:intergenic |
| CTGGTCTTGGCCAAGGTAAC+AGG | 0.324867 | 3_1:-92741356 | None:intergenic |
| GCCAAAGAGAACGTGGAATT+AGG | 0.332745 | 3_1:+92741832 | Msa0388310:three_prime_UTR |
| CTTTGTCCTTCCTGTTACCT+TGG | 0.336453 | 3_1:+92741346 | Msa0388310:CDS |
| GAAGGAAGGGTTAGAAGAGT+AGG | 0.342502 | 3_1:-92737799 | None:intergenic |
| GGTGCCTGTTGGAGCTGCTT+TGG | 0.345145 | 3_1:+92741543 | Msa0388310:CDS |
| CCCTGCTTGCAGGAATTATA+AGG | 0.353470 | 3_1:+92738945 | Msa0388310:CDS |
| GAAGGACAAAGTTGCTTTGT+AGG | 0.360673 | 3_1:-92741334 | None:intergenic |
| CAAAACAGCATCGAAATTAG+TGG | 0.363901 | 3_1:-92737997 | None:intergenic |
| CCTTTCGTTTACCTTGTTAT+GGG | 0.364026 | 3_1:-92741251 | None:intergenic |
| TTGGAGCACTTGCGTGCTAC+TGG | 0.374032 | 3_1:+92741590 | Msa0388310:CDS |
| GCTGTCGCTAGCTGTGCCTT+TGG | 0.374778 | 3_1:+92741571 | Msa0388310:CDS |
| TTGTAGGCCAAATTGTCTTT+GGG | 0.377632 | 3_1:-92741318 | None:intergenic |
| GTTAAGAACTTTCAGATTTG+CGG | 0.378804 | 3_1:+92740313 | Msa0388310:CDS |
| GGCCCTCCTCCTAAATTTGT+AGG | 0.394643 | 3_1:+92739312 | Msa0388310:CDS |
| AAGGAAGGGTTAGAAGAGTA+GGG | 0.394666 | 3_1:-92737798 | None:intergenic |
| CTAAATTTGTAGGCGGTAGT+TGG | 0.396623 | 3_1:+92739322 | Msa0388310:CDS |
| GTAAATCTCCAGCACCCTTC+CGG | 0.399033 | 3_1:-92740219 | None:intergenic |
| TTCTACATTCACTTTCTGTA+AGG | 0.399678 | 3_1:+92740981 | Msa0388310:CDS |
| AAGGTTGCAAAGTTATTTAA+CGG | 0.404216 | 3_1:+92739071 | Msa0388310:CDS |
| TTGTAATGTCACAGTTCATT+TGG | 0.408004 | 3_1:+92739703 | Msa0388310:intron |
| GTTAAGAAAAGGACCTGTTC+AGG | 0.410085 | 3_1:-92739778 | None:intergenic |
| TTCAGATGCCGGAAGGGTGC+TGG | 0.417375 | 3_1:+92740211 | Msa0388310:intron |
| CTAGTCAATAATATTATTCC+GGG | 0.420427 | 3_1:-92739110 | None:intergenic |
| AAAGGATAATTAATTCATAA+AGG | 0.422761 | 3_1:-92741953 | None:intergenic |
| TTGTTGAATTCTTTGCCAAT+TGG | 0.424135 | 3_1:+92738045 | Msa0388310:CDS |
| GAGATTTACTTACGTTTCAA+TGG | 0.424854 | 3_1:-92737642 | None:intergenic |
| AAGGCTCTGAAGAATTATTA+CGG | 0.426155 | 3_1:+92741418 | Msa0388310:CDS |
| TGCTTCTCTGGTCTTGGCCA+AGG | 0.429258 | 3_1:-92741363 | None:intergenic |
| TATGTGAATGTGATAGATTT+TGG | 0.430231 | 3_1:-92737715 | None:intergenic |
| CCGGAATAATATTATTGACT+AGG | 0.433099 | 3_1:+92739111 | Msa0388310:CDS |
| ATGTCACAGTTCATTTGGTC+TGG | 0.435845 | 3_1:+92739708 | Msa0388310:intron |
| AAATCGCGAGCTTTGTTGAA+TGG | 0.437692 | 3_1:-92741208 | None:intergenic |
| AGGCTCTGAAGAATTATTAC+GGG | 0.441929 | 3_1:+92741419 | Msa0388310:CDS |
| CTTTCAGATTTGCGGAAAAG+AGG | 0.444204 | 3_1:+92740321 | Msa0388310:CDS |
| ACCTTATAATTCCTGCAAGC+AGG | 0.447025 | 3_1:-92738946 | None:intergenic |
| ATTCCGGGATGCACTGCATC+AGG | 0.449922 | 3_1:-92739095 | None:intergenic |
| TTCACTTTCTGTAAGGATTG+AGG | 0.450388 | 3_1:+92740988 | Msa0388310:CDS |
| ATTGCCAAAGCAGCTCCAAC+AGG | 0.450663 | 3_1:-92741547 | None:intergenic |
| ATCAGGGGTTTCCGAGGTAA+AGG | 0.452700 | 3_1:-92742199 | None:intergenic |
| TTTGGCTCTGTTTCTGTGCA+CGG | 0.455216 | 3_1:+92737851 | Msa0388310:CDS |
| AGAACATTTGATTATTAGGA+GGG | 0.457274 | 3_1:+92741662 | Msa0388310:exon |
| AGAAGAAGAGAACCAGGTAT+TGG | 0.457747 | 3_1:+92737583 | Msa0388310:five_prime_UTR |
| AGGAGCTTAACAATGCCCTT+TGG | 0.458300 | 3_1:-92741933 | None:intergenic |
| AGAATGAAACCAGAGGCTTT+AGG | 0.462150 | 3_1:+92740850 | Msa0388310:CDS |
| CATCTTATTAACCTCCTAGA+AGG | 0.463110 | 3_1:-92740107 | None:intergenic |
| GATCGAACGACCGGGAAAAG+AGG | 0.467659 | 3_1:-92737907 | None:intergenic |
| AGAGAAGCAACAAAATTGAA+TGG | 0.469750 | 3_1:+92741377 | Msa0388310:CDS |
| GATGATGAGCTGTCAAAAGC+TGG | 0.470437 | 3_1:-92740085 | None:intergenic |
| TACAAGGAGAAGGGCATTGT+CGG | 0.472738 | 3_1:+92741460 | Msa0388310:CDS |
| TGTACAGAGTACAATGCTCT+TGG | 0.475294 | 3_1:+92741986 | Msa0388310:three_prime_UTR |
| CGGAATAATATTATTGACTA+GGG | 0.477023 | 3_1:+92739112 | Msa0388310:CDS |
| TAAATTTGTAGGCGGTAGTT+GGG | 0.480960 | 3_1:+92739323 | Msa0388310:CDS |
| TCAATGGCTTAAGACATAGA+TGG | 0.481332 | 3_1:-92737626 | None:intergenic |
| TAATGTATCAGACCCTGAAC+AGG | 0.490651 | 3_1:+92739765 | Msa0388310:CDS |
| TTTATTGTCTCTTTCTCCAA+AGG | 0.495997 | 3_1:+92741917 | Msa0388310:three_prime_UTR |
| AACGCTTATTTCTCTGTACA+AGG | 0.497152 | 3_1:+92741444 | Msa0388310:CDS |
| CTCACGAAGGATCGAACGAC+CGG | 0.498198 | 3_1:-92737916 | None:intergenic |
| GTTAACGACAAGGATCAAAC+TGG | 0.498652 | 3_1:+92737939 | Msa0388310:CDS |
| TCAACAACAGCGAAGGTAGC+AGG | 0.500832 | 3_1:-92738029 | None:intergenic |
| AAGACATAGATGGAGAAAAC+AGG | 0.501970 | 3_1:-92737616 | None:intergenic |
| AAGAACATTTGATTATTAGG+AGG | 0.503633 | 3_1:+92741661 | Msa0388310:exon |
| TATTTCTCTGTACAAGGAGA+AGG | 0.507004 | 3_1:+92741450 | Msa0388310:CDS |
| TTATTGTCTCTTTCTCCAAA+GGG | 0.508787 | 3_1:+92741918 | Msa0388310:three_prime_UTR |
| CTTTGGGAATTTGGGATCAC+CGG | 0.511255 | 3_1:-92741302 | None:intergenic |
| CCTTATAATTCCTGCAAGCA+GGG | 0.517713 | 3_1:-92738945 | None:intergenic |
| TCTTCATCTGCGAGGAATGC+CGG | 0.523949 | 3_1:+92741062 | Msa0388310:CDS |
| TCTGTACATTCTATCAAGAA+AGG | 0.524373 | 3_1:-92741971 | None:intergenic |
| AGAGGTGCCACGTGGATACT+GGG | 0.525155 | 3_1:+92740339 | Msa0388310:CDS |
| GGACCCTCTGCTCCAATACC+TGG | 0.530527 | 3_1:-92737595 | None:intergenic |
| ACAAGGAGAAGGGCATTGTC+GGG | 0.533802 | 3_1:+92741461 | Msa0388310:CDS |
| TTAAGAAAAGGACCTGTTCA+GGG | 0.534466 | 3_1:-92739777 | None:intergenic |
| AATGCAGCCTCATTACGAAA+AGG | 0.537375 | 3_1:+92739052 | Msa0388310:intron |
| AAGGGCATTGTCGGGAATGA+CGG | 0.538404 | 3_1:+92741469 | Msa0388310:CDS |
| ACGAATATGGATCAGAAGGA+AGG | 0.538709 | 3_1:-92737813 | None:intergenic |
| TAGGGTTGATTGTGCGTCAA+AGG | 0.543468 | 3_1:+92739130 | Msa0388310:CDS |
| CAAAGAGTACCTAAAGCCTC+TGG | 0.544087 | 3_1:-92740859 | None:intergenic |
| GAACCAGGTATTGGAGCAGA+GGG | 0.547327 | 3_1:+92737592 | Msa0388310:five_prime_UTR |
| TCCATCAAAACAAATATCGT+TGG | 0.548337 | 3_1:+92737687 | Msa0388310:five_prime_UTR |
| GTAGCACGCAAGTGCTCCAA+AGG | 0.553989 | 3_1:-92741587 | None:intergenic |
| CTTTCTGTAAGGATTGAGGA+TGG | 0.555325 | 3_1:+92740992 | Msa0388310:CDS |
| TTTGATGGAGATGAAGGAGA+AGG | 0.556864 | 3_1:-92737673 | None:intergenic |
| AGTCGCGACGAATGCAGTTG+TGG | 0.557017 | 3_1:+92741522 | Msa0388310:CDS |
| ACGACTTACATTACTTTGTG+TGG | 0.557629 | 3_1:+92742138 | Msa0388310:three_prime_UTR |
| GAAGAAGCTTCTCTAGGTAC+CGG | 0.562886 | 3_1:+92741283 | Msa0388310:CDS |
| AATGCAGTTGTGGTGCCTGT+TGG | 0.565048 | 3_1:+92741532 | Msa0388310:CDS |
| TGATATCATCTTAGAGCACA+AGG | 0.569235 | 3_1:+92739942 | Msa0388310:CDS |
| GAGCCTTGTAGACCTCGTCC+TGG | 0.570182 | 3_1:-92741402 | None:intergenic |
| AGAACCAGGTATTGGAGCAG+AGG | 0.570925 | 3_1:+92737591 | Msa0388310:five_prime_UTR |
| GAACCAGGACGAGGTCTACA+AGG | 0.572828 | 3_1:+92741399 | Msa0388310:CDS |
| CCGCCTACAAATTTAGGAGG+AGG | 0.574979 | 3_1:-92739315 | None:intergenic |
| AACTGAAGGAGCCGCACTTG+AGG | 0.575042 | 3_1:+92741492 | Msa0388310:CDS |
| CATGACGAATATGGATCAGA+AGG | 0.576694 | 3_1:-92737817 | None:intergenic |
| GTCGGGAATGACGGAACTGA+AGG | 0.578159 | 3_1:+92741478 | Msa0388310:CDS |
| CGCCTACAAATTTAGGAGGA+GGG | 0.580310 | 3_1:-92739314 | None:intergenic |
| ATTTCTCTGTACAAGGAGAA+GGG | 0.581571 | 3_1:+92741451 | Msa0388310:CDS |
| TGGTTTCATTCTTACTGCCA+CGG | 0.588843 | 3_1:-92740839 | None:intergenic |
| AAACGTAGAAGAAGAGAACC+AGG | 0.591010 | 3_1:+92737577 | Msa0388310:five_prime_UTR |
| GGATCAACAAGCAAACATCC+AGG | 0.593148 | 3_1:+92739415 | Msa0388310:CDS |
| CGAATATGGATCAGAAGGAA+GGG | 0.593908 | 3_1:-92737812 | None:intergenic |
| CTACCGCCTACAAATTTAGG+AGG | 0.594232 | 3_1:-92739318 | None:intergenic |
| ACGACCGGGAAAAGAGGAGG+AGG | 0.595904 | 3_1:-92737901 | None:intergenic |
| TTGATGGAGATGAAGGAGAA+GGG | 0.596240 | 3_1:-92737672 | None:intergenic |
| AAATGTTCTTTAAAGAGTGT+AGG | 0.597342 | 3_1:-92741648 | None:intergenic |
| ATCTAGATCAGGGGTTTCCG+AGG | 0.598504 | 3_1:-92742205 | None:intergenic |
| GGACCTGATGCAGTGCATCC+CGG | 0.601129 | 3_1:+92739092 | Msa0388310:CDS |
| TCTTTAAAGAGTGTAGGTGA+TGG | 0.602622 | 3_1:-92741642 | None:intergenic |
| GAACGTGGAATTAGGAATAG+CGG | 0.603279 | 3_1:+92741840 | Msa0388310:three_prime_UTR |
| AGCAAAGAAGAAGCTTCTCT+AGG | 0.612266 | 3_1:+92741277 | Msa0388310:CDS |
| GGAGGGCCCCAAAAGAGCAT+AGG | 0.612333 | 3_1:-92739297 | None:intergenic |
| CTCAACGGCGTAATCATGAT+CGG | 0.616416 | 3_1:-92737967 | None:intergenic |
| TCACGAAGGATCGAACGACC+GGG | 0.617996 | 3_1:-92737915 | None:intergenic |
| GGCGTTCACAGCAAAAGAGT+CGG | 0.618533 | 3_1:+92741611 | Msa0388310:CDS |
| AATTGAATGGAACCAGGACG+AGG | 0.622748 | 3_1:+92741390 | Msa0388310:CDS |
| CGGTCGTTCGATCCTTCGTG+AGG | 0.622957 | 3_1:+92737917 | Msa0388310:CDS |
| CGAACGACCGGGAAAAGAGG+AGG | 0.623560 | 3_1:-92737904 | None:intergenic |
| ATGATGCACGCACAGCTGAT+CGG | 0.624324 | 3_1:+92739382 | Msa0388310:CDS |
| CAGCTCATCATCCTTCTAGG+AGG | 0.625517 | 3_1:+92740096 | Msa0388310:CDS |
| CCCATAACAAGGTAAACGAA+AGG | 0.627694 | 3_1:+92741251 | Msa0388310:CDS |
| GTTTCAGGCCAAAGAGAACG+TGG | 0.631653 | 3_1:+92741825 | Msa0388310:intron |
| CAACAAAATTGAATGGAACC+AGG | 0.631843 | 3_1:+92741384 | Msa0388310:CDS |
| CCTTCGTGAGGTTAACGACA+AGG | 0.632180 | 3_1:+92737929 | Msa0388310:CDS |
| AAAGAATTCAACAACAGCGA+AGG | 0.632792 | 3_1:-92738036 | None:intergenic |
| ATTAGTGGCATTTAGCTCAA+CGG | 0.633624 | 3_1:-92737982 | None:intergenic |
| CTTTCGCAGATGTTCTGCCG+TGG | 0.634591 | 3_1:+92740822 | Msa0388310:intron |
| GTTGTGGAGTTCCCATAACA+AGG | 0.635067 | 3_1:+92741240 | Msa0388310:CDS |
| GATGAAGGAGAAGGGTCCGT+CGG | 0.651170 | 3_1:-92737664 | None:intergenic |
| GACTATTAAATCCTCAAGTG+CGG | 0.654925 | 3_1:-92741503 | None:intergenic |
| AGAGAAATAAACCTTTACCT+CGG | 0.659879 | 3_1:+92742188 | Msa0388310:three_prime_UTR |
| AAACGTAAGTAAATCTCCGA+CGG | 0.675243 | 3_1:+92737648 | Msa0388310:five_prime_UTR |
| ATGATAAAACCAGAAACTCG+TGG | 0.677143 | 3_1:+92740044 | Msa0388310:CDS |
| TCATCTGCGAGGAATGCCGG+CGG | 0.684106 | 3_1:+92741065 | Msa0388310:CDS |
| TCACAACTTCTTCATCTGCG+AGG | 0.693802 | 3_1:+92741054 | Msa0388310:CDS |
| CCTCCTCCTAAATTTGTAGG+CGG | 0.694547 | 3_1:+92739315 | Msa0388310:CDS |
| GGCAGTAAGAATGAAACCAG+AGG | 0.705418 | 3_1:+92740843 | Msa0388310:CDS |
| TCTTGGCCAAGGTAACAGGA+AGG | 0.706504 | 3_1:-92741352 | None:intergenic |
| TGCGGAAAAGAGGTGCCACG+TGG | 0.728188 | 3_1:+92740331 | Msa0388310:CDS |
| CCTTGTCGTTAACCTCACGA+AGG | 0.731772 | 3_1:-92737929 | None:intergenic |
| GCTCTTACCCAGTATCCACG+TGG | 0.775751 | 3_1:-92740346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATTATTATATCA+TGG | - | chr3_1:92739637-92739656 | None:intergenic | 10.0% |
| !!! | TCTAATTTTTCTGATTAAAA+GGG | - | chr3_1:92738186-92738205 | None:intergenic | 15.0% |
| !!! | ATCTAATTTTTCTGATTAAA+AGG | - | chr3_1:92738187-92738206 | None:intergenic | 15.0% |
| !!! | TTGAAAAAACAATTTTCATT+AGG | - | chr3_1:92738780-92738799 | None:intergenic | 15.0% |
| !!! | TAAAACATACAATTTGTTTT+GGG | + | chr3_1:92738978-92738997 | Msa0388310:intron | 15.0% |
| !! | AAAAAAAAAATCAAACATGT+TGG | - | chr3_1:92739807-92739826 | None:intergenic | 15.0% |
| !!! | TATAATGTATTTTCTTCTTT+TGG | + | chr3_1:92740148-92740167 | Msa0388310:intron | 15.0% |
| !! | TTATACTCATAATTACATAA+TGG | + | chr3_1:92740474-92740493 | Msa0388310:intron | 15.0% |
| !! | TTAAAGAACATTTGATTATT+AGG | + | chr3_1:92741658-92741677 | Msa0388310:exon | 15.0% |
| !!! | TTAAGTTTTGCATAATTAAA+AGG | + | chr3_1:92741716-92741735 | Msa0388310:intron | 15.0% |
| !!! | TAAGTTTTGCATAATTAAAA+GGG | + | chr3_1:92741717-92741736 | Msa0388310:intron | 15.0% |
| !! | AAAGGATAATTAATTCATAA+AGG | - | chr3_1:92741956-92741975 | None:intergenic | 15.0% |
| !!! | ATTTTAATTGTATGTTTCGT+TGG | - | chr3_1:92737743-92737762 | None:intergenic | 20.0% |
| !! | TAATAAATTCATGACGAATA+TGG | - | chr3_1:92737829-92737848 | None:intergenic | 20.0% |
| !! | CGTCATGAATTTATTATATT+TGG | + | chr3_1:92737833-92737852 | Msa0388310:exon | 20.0% |
| !! | AATTAAAAAGACTAACCAAT+TGG | - | chr3_1:92738063-92738082 | None:intergenic | 20.0% |
| !! | TATATCTTGAATTCTCTTAT+AGG | + | chr3_1:92738100-92738119 | Msa0388310:intron | 20.0% |
| !!! | AAAAGTTCATTTTTTGTGAA+AGG | + | chr3_1:92738130-92738149 | Msa0388310:intron | 20.0% |
| !! | TCAAGTTATTTATTACAATC+AGG | + | chr3_1:92738208-92738227 | Msa0388310:intron | 20.0% |
| !!! | CTAAAACATACAATTTGTTT+TGG | + | chr3_1:92738977-92738996 | Msa0388310:intron | 20.0% |
| !! | CATTATAAGAGATCAATAAA+AGG | - | chr3_1:92740135-92740154 | None:intergenic | 20.0% |
| !! | GATTTATACATCATATTATC+AGG | - | chr3_1:92740803-92740822 | None:intergenic | 20.0% |
| !!! | TTGAACAAGTTGATTAAATA+TGG | - | chr3_1:92740907-92740926 | None:intergenic | 20.0% |
| !!! | ACATTTTTGCTTTGTAATTT+TGG | + | chr3_1:92742065-92742084 | Msa0388310:three_prime_UTR | 20.0% |
| !!! | CATTTTTGCTTTGTAATTTT+GGG | + | chr3_1:92742066-92742085 | Msa0388310:three_prime_UTR | 20.0% |
| !! | TATGTGAATGTGATAGATTT+TGG | - | chr3_1:92737718-92737737 | None:intergenic | 25.0% |
| ! | TAAGAGAATTCAAGATATAC+AGG | - | chr3_1:92738099-92738118 | None:intergenic | 25.0% |
| !!! | TCGGTTTGATTTTTATAATG+TGG | + | chr3_1:92738287-92738306 | Msa0388310:intron | 25.0% |
| ! | TAGAATCAATTGCATAATGT+TGG | - | chr3_1:92738367-92738386 | None:intergenic | 25.0% |
| ! | TTCTATGAATTGTTAAGTGA+AGG | + | chr3_1:92738382-92738401 | Msa0388310:intron | 25.0% |
| ! | TCTATGAATTGTTAAGTGAA+GGG | + | chr3_1:92738383-92738402 | Msa0388310:intron | 25.0% |
| !! | AAAAATTTGATGCAGGTTTT+GGG | - | chr3_1:92738522-92738541 | None:intergenic | 25.0% |
| !! | ATCAAATTTTTGTACACCAT+TGG | + | chr3_1:92738531-92738550 | Msa0388310:intron | 25.0% |
| !! | TGATCTGGATGTATTTTATA+CGG | + | chr3_1:92738558-92738577 | Msa0388310:intron | 25.0% |
| ! | ATATTTAGCAATGTCTTCAT+CGG | - | chr3_1:92738666-92738685 | None:intergenic | 25.0% |
| !!! | ACATTTGATTTTCAGTTAGA+TGG | - | chr3_1:92738803-92738822 | None:intergenic | 25.0% |
| !! | TTAAAATGCTTGCTGAAAAA+AGG | - | chr3_1:92739004-92739023 | None:intergenic | 25.0% |
| ! | AAGGTTGCAAAGTTATTTAA+CGG | + | chr3_1:92739071-92739090 | Msa0388310:CDS | 25.0% |
| ! | CTAGTCAATAATATTATTCC+GGG | - | chr3_1:92739113-92739132 | None:intergenic | 25.0% |
| ! | CCTAGTCAATAATATTATTC+CGG | - | chr3_1:92739114-92739133 | None:intergenic | 25.0% |
| !! | CGGAATAATATTATTGACTA+GGG | + | chr3_1:92739112-92739131 | Msa0388310:CDS | 25.0% |
| !!! | CAAGGGTGTTTTTTTATAAA+TGG | - | chr3_1:92739196-92739215 | None:intergenic | 25.0% |
| ! | CATTTATAAAAAAACACCCT+TGG | + | chr3_1:92739194-92739213 | Msa0388310:intron | 25.0% |
| !!! | CATATTTCTGTTCACTTTTT+TGG | + | chr3_1:92739224-92739243 | Msa0388310:intron | 25.0% |
| !!! | ATATCACTTTTCTCTTGTTT+AGG | - | chr3_1:92739351-92739370 | None:intergenic | 25.0% |
| ! | ACATACATTCATTGTTAATG+TGG | + | chr3_1:92739448-92739467 | Msa0388310:intron | 25.0% |
| ! | AATGTGGTTACAATATTTGT+AGG | + | chr3_1:92739464-92739483 | Msa0388310:intron | 25.0% |
| !! | ATCATCTGGCTTAAATAAAA+TGG | - | chr3_1:92739493-92739512 | None:intergenic | 25.0% |
| ! | ATGAATTCAAATACATCATC+TGG | - | chr3_1:92739507-92739526 | None:intergenic | 25.0% |
| !! | CAGAACAGATAATTTCTTTT+TGG | + | chr3_1:92740018-92740037 | Msa0388310:intron | 25.0% |
| ! | AAATGATTTCGTCAAACAAA+CGG | + | chr3_1:92740654-92740673 | Msa0388310:intron | 25.0% |
| !! | TTGTGAATTTTCTTATTACG+AGG | + | chr3_1:92740772-92740791 | Msa0388310:intron | 25.0% |
| !! | AAATGTTCTTTAAAGAGTGT+AGG | - | chr3_1:92741651-92741670 | None:intergenic | 25.0% |
| ! | AAGAACATTTGATTATTAGG+AGG | + | chr3_1:92741661-92741680 | Msa0388310:exon | 25.0% |
| ! | AGAACATTTGATTATTAGGA+GGG | + | chr3_1:92741662-92741681 | Msa0388310:exon | 25.0% |
| ! | TGCATAATTAAAAGGGATAT+AGG | + | chr3_1:92741724-92741743 | Msa0388310:intron | 25.0% |
| !! | GTTTTCATAATGTTTGTTTC+AGG | + | chr3_1:92741810-92741829 | Msa0388310:intron | 25.0% |
| GAGATTTACTTACGTTTCAA+TGG | - | chr3_1:92737645-92737664 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGATGGAGATGA+AGG | - | chr3_1:92737682-92737701 | None:intergenic | 30.0% |
| TCCATCAAAACAAATATCGT+TGG | + | chr3_1:92737687-92737706 | Msa0388310:five_prime_UTR | 30.0% | |
| !!! | ACCAACGATATTTGTTTTGA+TGG | - | chr3_1:92737691-92737710 | None:intergenic | 30.0% |
| ! | TTGTGGATTGTTTCAGAAAA+TGG | - | chr3_1:92737776-92737795 | None:intergenic | 30.0% |
| TTGTTGAATTCTTTGCCAAT+TGG | + | chr3_1:92738045-92738064 | Msa0388310:CDS | 30.0% | |
| !!! | TTTGGGATATTTTGGTTGAT+CGG | + | chr3_1:92738268-92738287 | Msa0388310:intron | 30.0% |
| AGTAGGTAAAAAAAGTAGTG+TGG | + | chr3_1:92738413-92738432 | Msa0388310:intron | 30.0% | |
| ! | CAAAAATTTGATGCAGGTTT+TGG | - | chr3_1:92738523-92738542 | None:intergenic | 30.0% |
| ! | TTATACCTTTGTTTGCTAAG+TGG | + | chr3_1:92738581-92738600 | Msa0388310:intron | 30.0% |
| GCACATTGGTAGATTTATAA+AGG | + | chr3_1:92738863-92738882 | Msa0388310:intron | 30.0% | |
| ! | CCGGAATAATATTATTGACT+AGG | + | chr3_1:92739111-92739130 | Msa0388310:CDS | 30.0% |
| ! | TCATTATCCTATGCTCTTTT+GGG | + | chr3_1:92739290-92739309 | Msa0388310:CDS | 30.0% |
| TTGTAATGTCACAGTTCATT+TGG | + | chr3_1:92739703-92739722 | Msa0388310:intron | 30.0% | |
| AAAAAATCAAACATGTTGGC+AGG | - | chr3_1:92739803-92739822 | None:intergenic | 30.0% | |
| ACAAAACAAAAGGTCAATCA+GGG | - | chr3_1:92739980-92739999 | None:intergenic | 30.0% | |
| AAGAATGAGCACAAAACAAA+AGG | - | chr3_1:92739990-92740009 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTGCTCATTCTTT+TGG | + | chr3_1:92739991-92740010 | Msa0388310:intron | 30.0% |
| !!! | GGATTATTTTTTTCAGATGC+CGG | + | chr3_1:92740200-92740219 | Msa0388310:intron | 30.0% |
| ! | ACTTGTATCCAACAGATTTT+TGG | + | chr3_1:92740257-92740276 | Msa0388310:CDS | 30.0% |
| GTTAAGAACTTTCAGATTTG+CGG | + | chr3_1:92740313-92740332 | Msa0388310:CDS | 30.0% | |
| AAACATTTCATACAAAAGCC+AGG | - | chr3_1:92740417-92740436 | None:intergenic | 30.0% | |
| CACGTTGTAGACAATATAAA+TGG | - | chr3_1:92740447-92740466 | None:intergenic | 30.0% | |
| AACAAATAGATGAGTGACTA+AGG | + | chr3_1:92740513-92740532 | Msa0388310:intron | 30.0% | |
| ACAGATACCATTATGGTATA+GGG | - | chr3_1:92740549-92740568 | None:intergenic | 30.0% | |
| AATGATTTCGTCAAACAAAC+GGG | + | chr3_1:92740655-92740674 | Msa0388310:intron | 30.0% | |
| TATATCGCTGATAAAGAAAC+AGG | - | chr3_1:92740692-92740711 | None:intergenic | 30.0% | |
| GAACTAGAAAACTACATTTG+AGG | - | chr3_1:92740885-92740904 | None:intergenic | 30.0% | |
| TTCTACATTCACTTTCTGTA+AGG | + | chr3_1:92740981-92741000 | Msa0388310:CDS | 30.0% | |
| ! | ATTTTTACGAGATGTGTTCA+AGG | + | chr3_1:92741089-92741108 | Msa0388310:CDS | 30.0% |
| ! | AGATGTGTTCAAGGTATTAA+AGG | + | chr3_1:92741098-92741117 | Msa0388310:intron | 30.0% |
| ! | CAAATTGTCTTTGGGAATTT+GGG | - | chr3_1:92741313-92741332 | None:intergenic | 30.0% |
| !! | ATTCAATTTTGTTGCTTCTC+TGG | - | chr3_1:92741378-92741397 | None:intergenic | 30.0% |
| AGAGAAGCAACAAAATTGAA+TGG | + | chr3_1:92741377-92741396 | Msa0388310:CDS | 30.0% | |
| !! | AAGGCTCTGAAGAATTATTA+CGG | + | chr3_1:92741418-92741437 | Msa0388310:CDS | 30.0% |
| TTTATTGTCTCTTTCTCCAA+AGG | + | chr3_1:92741917-92741936 | Msa0388310:three_prime_UTR | 30.0% | |
| TTATTGTCTCTTTCTCCAAA+GGG | + | chr3_1:92741918-92741937 | Msa0388310:three_prime_UTR | 30.0% | |
| TCTGTACATTCTATCAAGAA+AGG | - | chr3_1:92741974-92741993 | None:intergenic | 30.0% | |
| !!! | TCATTTGTGCTACTTTCTTT+TGG | + | chr3_1:92742019-92742038 | Msa0388310:three_prime_UTR | 30.0% |
| !!! | CATTTGTGCTACTTTCTTTT+GGG | + | chr3_1:92742020-92742039 | Msa0388310:three_prime_UTR | 30.0% |
| !!! | ATTTGTGCTACTTTCTTTTG+GGG | + | chr3_1:92742021-92742040 | Msa0388310:three_prime_UTR | 30.0% |
| AGAGAAATAAACCTTTACCT+CGG | + | chr3_1:92742188-92742207 | Msa0388310:three_prime_UTR | 30.0% | |
| AAGACATAGATGGAGAAAAC+AGG | - | chr3_1:92737619-92737638 | None:intergenic | 35.0% | |
| TCAATGGCTTAAGACATAGA+TGG | - | chr3_1:92737629-92737648 | None:intergenic | 35.0% | |
| AAACGTAAGTAAATCTCCGA+CGG | + | chr3_1:92737648-92737667 | Msa0388310:five_prime_UTR | 35.0% | |
| ! | ATTAGTGGCATTTAGCTCAA+CGG | - | chr3_1:92737985-92738004 | None:intergenic | 35.0% |
| ! | CAAAACAGCATCGAAATTAG+TGG | - | chr3_1:92738000-92738019 | None:intergenic | 35.0% |
| AAAGAATTCAACAACAGCGA+AGG | - | chr3_1:92738039-92738058 | None:intergenic | 35.0% | |
| ATGCAAACAATCCAATGCTT+TGG | + | chr3_1:92738250-92738269 | Msa0388310:intron | 35.0% | |
| TGCAAACAATCCAATGCTTT+GGG | + | chr3_1:92738251-92738270 | Msa0388310:intron | 35.0% | |
| !!! | TCCAATGCTTTGGGATATTT+TGG | + | chr3_1:92738260-92738279 | Msa0388310:intron | 35.0% |
| ACCAAAATATCCCAAAGCAT+TGG | - | chr3_1:92738264-92738283 | None:intergenic | 35.0% | |
| AAGTGAAGGGTTCAAAAAGT+AGG | + | chr3_1:92738396-92738415 | Msa0388310:intron | 35.0% | |
| GTTTCATGTTCTTAACCAGA+CGG | - | chr3_1:92738466-92738485 | None:intergenic | 35.0% | |
| GGTGTACAAAAATTTGATGC+AGG | - | chr3_1:92738529-92738548 | None:intergenic | 35.0% | |
| ACATAATCCTTGATGCACAT+TGG | + | chr3_1:92738849-92738868 | Msa0388310:intron | 35.0% | |
| AAATCTACCAATGTGCATCA+AGG | - | chr3_1:92738859-92738878 | None:intergenic | 35.0% | |
| TTAGTTCAGTGCGTTAATGA+TGG | - | chr3_1:92739031-92739050 | None:intergenic | 35.0% | |
| ! | TTTGCAACCTTTTCGTAATG+AGG | - | chr3_1:92739062-92739081 | None:intergenic | 35.0% |
| ! | AAAAAAACACCCTTGGTGAT+TGG | + | chr3_1:92739201-92739220 | Msa0388310:intron | 35.0% |
| AGAAATATGCCAATCACCAA+GGG | - | chr3_1:92739213-92739232 | None:intergenic | 35.0% | |
| ! | CTCTGTGATAAGTTTTCTGT+TGG | + | chr3_1:92739267-92739286 | Msa0388310:CDS | 35.0% |
| ! | GTCATTATCCTATGCTCTTT+TGG | + | chr3_1:92739289-92739308 | Msa0388310:CDS | 35.0% |
| ! | CATTATCCTATGCTCTTTTG+GGG | + | chr3_1:92739291-92739310 | Msa0388310:CDS | 35.0% |
| TAAATTTGTAGGCGGTAGTT+GGG | + | chr3_1:92739323-92739342 | Msa0388310:CDS | 35.0% | |
| ATGTATGTATACCTCATACC+TGG | - | chr3_1:92739436-92739455 | None:intergenic | 35.0% | |
| TTAAGAAAAGGACCTGTTCA+GGG | - | chr3_1:92739780-92739799 | None:intergenic | 35.0% | |
| TGATATCATCTTAGAGCACA+AGG | + | chr3_1:92739942-92739961 | Msa0388310:CDS | 35.0% | |
| CACAAAACAAAAGGTCAATC+AGG | - | chr3_1:92739981-92740000 | None:intergenic | 35.0% | |
| ATGATAAAACCAGAAACTCG+TGG | + | chr3_1:92740044-92740063 | Msa0388310:CDS | 35.0% | |
| CATCTTATTAACCTCCTAGA+AGG | - | chr3_1:92740110-92740129 | None:intergenic | 35.0% | |
| CATGATTGTTTGTGTGTTTC+TGG | + | chr3_1:92740179-92740198 | Msa0388310:intron | 35.0% | |
| !!! | TATTTTTTTCAGATGCCGGA+AGG | + | chr3_1:92740204-92740223 | Msa0388310:intron | 35.0% |
| !!! | ATTTTTTTCAGATGCCGGAA+GGG | + | chr3_1:92740205-92740224 | Msa0388310:intron | 35.0% |
| TGAGATGACCAAAAATCTGT+TGG | - | chr3_1:92740268-92740287 | None:intergenic | 35.0% | |
| TAGATGAGTGACTAAGGTAA+AGG | + | chr3_1:92740519-92740538 | Msa0388310:intron | 35.0% | |
| AGGAAAACCCTATACCATAA+TGG | + | chr3_1:92740539-92740558 | Msa0388310:intron | 35.0% | |
| CACAGATACCATTATGGTAT+AGG | - | chr3_1:92740550-92740569 | None:intergenic | 35.0% | |
| ATACCATAATGGTATCTGTG+CGG | + | chr3_1:92740550-92740569 | Msa0388310:intron | 35.0% | |
| GGAAATTCTGTTGGATTTGA+AGG | + | chr3_1:92740571-92740590 | Msa0388310:intron | 35.0% | |
| ! | TCAAGGAAAGTCGTTGATAA+TGG | - | chr3_1:92740933-92740952 | None:intergenic | 35.0% |
| TTCACTTTCTGTAAGGATTG+AGG | + | chr3_1:92740988-92741007 | Msa0388310:CDS | 35.0% | |
| ATATGAAGTCAGCATGTGAA+GGG | - | chr3_1:92741169-92741188 | None:intergenic | 35.0% | |
| TATATGAAGTCAGCATGTGA+AGG | - | chr3_1:92741170-92741189 | None:intergenic | 35.0% | |
| ! | CCTTTCGTTTACCTTGTTAT+GGG | - | chr3_1:92741254-92741273 | None:intergenic | 35.0% |
| ! | CCAAATTGTCTTTGGGAATT+TGG | - | chr3_1:92741314-92741333 | None:intergenic | 35.0% |
| CCAAATTCCCAAAGACAATT+TGG | + | chr3_1:92741311-92741330 | Msa0388310:CDS | 35.0% | |
| TTGTAGGCCAAATTGTCTTT+GGG | - | chr3_1:92741321-92741340 | None:intergenic | 35.0% | |
| TTTGTAGGCCAAATTGTCTT+TGG | - | chr3_1:92741322-92741341 | None:intergenic | 35.0% | |
| CAACAAAATTGAATGGAACC+AGG | + | chr3_1:92741384-92741403 | Msa0388310:CDS | 35.0% | |
| !! | AGGCTCTGAAGAATTATTAC+GGG | + | chr3_1:92741419-92741438 | Msa0388310:CDS | 35.0% |
| ! | AACGCTTATTTCTCTGTACA+AGG | + | chr3_1:92741444-92741463 | Msa0388310:CDS | 35.0% |
| TATTTCTCTGTACAAGGAGA+AGG | + | chr3_1:92741450-92741469 | Msa0388310:CDS | 35.0% | |
| ATTTCTCTGTACAAGGAGAA+GGG | + | chr3_1:92741451-92741470 | Msa0388310:CDS | 35.0% | |
| GACTATTAAATCCTCAAGTG+CGG | - | chr3_1:92741506-92741525 | None:intergenic | 35.0% | |
| ! | TCTTTAAAGAGTGTAGGTGA+TGG | - | chr3_1:92741645-92741664 | None:intergenic | 35.0% |
| AGGGATATAGGTATAAGTAG+AGG | + | chr3_1:92741736-92741755 | Msa0388310:intron | 35.0% | |
| GGGATATAGGTATAAGTAGA+GGG | + | chr3_1:92741737-92741756 | Msa0388310:intron | 35.0% | |
| ATATAGGTATAAGTAGAGGG+AGG | + | chr3_1:92741740-92741759 | Msa0388310:intron | 35.0% | |
| TATAGGTATAAGTAGAGGGA+GGG | + | chr3_1:92741741-92741760 | Msa0388310:intron | 35.0% | |
| !!! | TTTGTGCTACTTTCTTTTGG+GGG | + | chr3_1:92742022-92742041 | Msa0388310:three_prime_UTR | 35.0% |
| ACGACTTACATTACTTTGTG+TGG | + | chr3_1:92742138-92742157 | Msa0388310:three_prime_UTR | 35.0% | |
| AAACGTAGAAGAAGAGAACC+AGG | + | chr3_1:92737577-92737596 | Msa0388310:five_prime_UTR | 40.0% | |
| AGAAGAAGAGAACCAGGTAT+TGG | + | chr3_1:92737583-92737602 | Msa0388310:five_prime_UTR | 40.0% | |
| TTGATGGAGATGAAGGAGAA+GGG | - | chr3_1:92737675-92737694 | None:intergenic | 40.0% | |
| TTTGATGGAGATGAAGGAGA+AGG | - | chr3_1:92737676-92737695 | None:intergenic | 40.0% | |
| ! | GTTAGAAGAGTAGGGTTTTG+TGG | - | chr3_1:92737793-92737812 | None:intergenic | 40.0% |
| AAGGAAGGGTTAGAAGAGTA+GGG | - | chr3_1:92737801-92737820 | None:intergenic | 40.0% | |
| CGAATATGGATCAGAAGGAA+GGG | - | chr3_1:92737815-92737834 | None:intergenic | 40.0% | |
| ACGAATATGGATCAGAAGGA+AGG | - | chr3_1:92737816-92737835 | None:intergenic | 40.0% | |
| CATGACGAATATGGATCAGA+AGG | - | chr3_1:92737820-92737839 | None:intergenic | 40.0% | |
| GTTAACGACAAGGATCAAAC+TGG | + | chr3_1:92737939-92737958 | Msa0388310:CDS | 40.0% | |
| TACCACTTACCACTAGTTCA+AGG | + | chr3_1:92738326-92738345 | Msa0388310:intron | 40.0% | |
| TACCTTGAACTAGTGGTAAG+TGG | - | chr3_1:92738331-92738350 | None:intergenic | 40.0% | |
| TACCACTAGTTCAAGGTAGT+TGG | + | chr3_1:92738333-92738352 | Msa0388310:intron | 40.0% | |
| TCACATGAATATTGTCCGTC+TGG | + | chr3_1:92738448-92738467 | Msa0388310:intron | 40.0% | |
| TACACCATTGGTATCTGATC+TGG | + | chr3_1:92738543-92738562 | Msa0388310:intron | 40.0% | |
| ACATCCAGATCAGATACCAA+TGG | - | chr3_1:92738550-92738569 | None:intergenic | 40.0% | |
| CCTTATAATTCCTGCAAGCA+GGG | - | chr3_1:92738948-92738967 | None:intergenic | 40.0% | |
| ACCTTATAATTCCTGCAAGC+AGG | - | chr3_1:92738949-92738968 | None:intergenic | 40.0% | |
| AATGCAGCCTCATTACGAAA+AGG | + | chr3_1:92739052-92739071 | Msa0388310:intron | 40.0% | |
| CAGAAATATGCCAATCACCA+AGG | - | chr3_1:92739214-92739233 | None:intergenic | 40.0% | |
| CAACTACCGCCTACAAATTT+AGG | - | chr3_1:92739324-92739343 | None:intergenic | 40.0% | |
| CTAAATTTGTAGGCGGTAGT+TGG | + | chr3_1:92739322-92739341 | Msa0388310:CDS | 40.0% | |
| TATGTTCCATCAGATGCAAC+AGG | - | chr3_1:92739607-92739626 | None:intergenic | 40.0% | |
| ATGTCACAGTTCATTTGGTC+TGG | + | chr3_1:92739708-92739727 | Msa0388310:intron | 40.0% | |
| TAATGTATCAGACCCTGAAC+AGG | + | chr3_1:92739765-92739784 | Msa0388310:CDS | 40.0% | |
| GTTAAGAAAAGGACCTGTTC+AGG | - | chr3_1:92739781-92739800 | None:intergenic | 40.0% | |
| CATGTTGGCAGGTTAAGAAA+AGG | - | chr3_1:92739792-92739811 | None:intergenic | 40.0% | |
| CTTTCAGATTTGCGGAAAAG+AGG | + | chr3_1:92740321-92740340 | Msa0388310:CDS | 40.0% | |
| !! | ACATAATGGATGCGTATGCA+TGG | + | chr3_1:92740488-92740507 | Msa0388310:intron | 40.0% |
| TTTCCGCACAGATACCATTA+TGG | - | chr3_1:92740556-92740575 | None:intergenic | 40.0% | |
| TATCTGTGCGGAAATTCTGT+TGG | + | chr3_1:92740562-92740581 | Msa0388310:intron | 40.0% | |
| TGGTTTCATTCTTACTGCCA+CGG | - | chr3_1:92740842-92740861 | None:intergenic | 40.0% | |
| AGAATGAAACCAGAGGCTTT+AGG | + | chr3_1:92740850-92740869 | Msa0388310:CDS | 40.0% | |
| CCACAGCTGAAAAACAATCA+AGG | - | chr3_1:92740950-92740969 | None:intergenic | 40.0% | |
| !! | CCTTGATTGTTTTTCAGCTG+TGG | + | chr3_1:92740947-92740966 | Msa0388310:intron | 40.0% |
| !! | TGTTTTTCAGCTGTGGCTTA+TGG | + | chr3_1:92740954-92740973 | Msa0388310:intron | 40.0% |
| !! | GTTTTTCAGCTGTGGCTTAT+GGG | + | chr3_1:92740955-92740974 | Msa0388310:intron | 40.0% |
| CTTTCTGTAAGGATTGAGGA+TGG | + | chr3_1:92740992-92741011 | Msa0388310:CDS | 40.0% | |
| !! | AAATCGCGAGCTTTGTTGAA+TGG | - | chr3_1:92741211-92741230 | None:intergenic | 40.0% |
| ! | AAGCTCGCGATTTTGCTTTA+TGG | + | chr3_1:92741218-92741237 | Msa0388310:CDS | 40.0% |
| ! | GCGATTTTGCTTTATGGTTG+TGG | + | chr3_1:92741224-92741243 | Msa0388310:CDS | 40.0% |
| CCCATAACAAGGTAAACGAA+AGG | + | chr3_1:92741251-92741270 | Msa0388310:CDS | 40.0% | |
| GCCTTTCGTTTACCTTGTTA+TGG | - | chr3_1:92741255-92741274 | None:intergenic | 40.0% | |
| AGCAAAGAAGAAGCTTCTCT+AGG | + | chr3_1:92741277-92741296 | Msa0388310:CDS | 40.0% | |
| ! | GAAGGACAAAGTTGCTTTGT+AGG | - | chr3_1:92741337-92741356 | None:intergenic | 40.0% |
| !! | TTTTGTTGCTTCTCTGGTCT+TGG | - | chr3_1:92741372-92741391 | None:intergenic | 40.0% |
| TCCTAATTCCACGTTCTCTT+TGG | - | chr3_1:92741836-92741855 | None:intergenic | 40.0% | |
| GAACGTGGAATTAGGAATAG+CGG | + | chr3_1:92741840-92741859 | Msa0388310:three_prime_UTR | 40.0% | |
| TGTACAGAGTACAATGCTCT+TGG | + | chr3_1:92741986-92742005 | Msa0388310:three_prime_UTR | 40.0% | |
| GAAGGAAGGGTTAGAAGAGT+AGG | - | chr3_1:92737802-92737821 | None:intergenic | 45.0% | |
| !! | TTTGGCTCTGTTTCTGTGCA+CGG | + | chr3_1:92737851-92737870 | Msa0388310:CDS | 45.0% |
| CTCAACGGCGTAATCATGAT+CGG | - | chr3_1:92737970-92737989 | None:intergenic | 45.0% | |
| CACCAACTACCTTGAACTAG+TGG | - | chr3_1:92738338-92738357 | None:intergenic | 45.0% | |
| GCAAGCCACTTAGCAAACAA+AGG | - | chr3_1:92738589-92738608 | None:intergenic | 45.0% | |
| ! | TTTTCCTTCGCTTGTCTCTC+AGG | + | chr3_1:92738920-92738939 | Msa0388310:intron | 45.0% |
| CCCTGCTTGCAGGAATTATA+AGG | + | chr3_1:92738945-92738964 | Msa0388310:CDS | 45.0% | |
| ! | TAGGGTTGATTGTGCGTCAA+AGG | + | chr3_1:92739130-92739149 | Msa0388310:CDS | 45.0% |
| CGCCTACAAATTTAGGAGGA+GGG | - | chr3_1:92739317-92739336 | None:intergenic | 45.0% | |
| CCTCCTCCTAAATTTGTAGG+CGG | + | chr3_1:92739315-92739334 | Msa0388310:CDS | 45.0% | |
| CTACCGCCTACAAATTTAGG+AGG | - | chr3_1:92739321-92739340 | None:intergenic | 45.0% | |
| CAGCTGATCGGTTGCTTAAT+TGG | + | chr3_1:92739394-92739413 | Msa0388310:CDS | 45.0% | |
| GGATCAACAAGCAAACATCC+AGG | + | chr3_1:92739415-92739434 | Msa0388310:CDS | 45.0% | |
| CAAGCAAACATCCAGGTATG+AGG | + | chr3_1:92739422-92739441 | Msa0388310:intron | 45.0% | |
| AGCATTCCTGTTGCATCTGA+TGG | + | chr3_1:92739598-92739617 | Msa0388310:intron | 45.0% | |
| GATGATGAGCTGTCAAAAGC+TGG | - | chr3_1:92740088-92740107 | None:intergenic | 45.0% | |
| TGACAGCTCATCATCCTTCT+AGG | + | chr3_1:92740093-92740112 | Msa0388310:CDS | 45.0% | |
| GGTACAGTTTATCACCGTGA+CGG | + | chr3_1:92740592-92740611 | Msa0388310:intron | 45.0% | |
| CATCTCACCAAACTCGCATA+TGG | - | chr3_1:92740632-92740651 | None:intergenic | 45.0% | |
| CGCTGATAAAGAAACAGGTC+TGG | - | chr3_1:92740687-92740706 | None:intergenic | 45.0% | |
| GGCAGTAAGAATGAAACCAG+AGG | + | chr3_1:92740843-92740862 | Msa0388310:CDS | 45.0% | |
| !! | CAAAGAGTACCTAAAGCCTC+TGG | - | chr3_1:92740862-92740881 | None:intergenic | 45.0% |
| TCACAACTTCTTCATCTGCG+AGG | + | chr3_1:92741054-92741073 | Msa0388310:CDS | 45.0% | |
| ACATCTCGTAAAAATGCCGC+CGG | - | chr3_1:92741084-92741103 | None:intergenic | 45.0% | |
| TCAGCATGTGAAGGGCTAAA+AGG | - | chr3_1:92741161-92741180 | None:intergenic | 45.0% | |
| GTTGTGGAGTTCCCATAACA+AGG | + | chr3_1:92741240-92741259 | Msa0388310:CDS | 45.0% | |
| GAAGAAGCTTCTCTAGGTAC+CGG | + | chr3_1:92741283-92741302 | Msa0388310:CDS | 45.0% | |
| ! | CTTTGGGAATTTGGGATCAC+CGG | - | chr3_1:92741305-92741324 | None:intergenic | 45.0% |
| CTTTGTCCTTCCTGTTACCT+TGG | + | chr3_1:92741346-92741365 | Msa0388310:CDS | 45.0% | |
| AATTGAATGGAACCAGGACG+AGG | + | chr3_1:92741390-92741409 | Msa0388310:CDS | 45.0% | |
| !! | TACAAGGAGAAGGGCATTGT+CGG | + | chr3_1:92741460-92741479 | Msa0388310:CDS | 45.0% |
| GCCAAAGAGAACGTGGAATT+AGG | + | chr3_1:92741832-92741851 | Msa0388310:three_prime_UTR | 45.0% | |
| AGGAGCTTAACAATGCCCTT+TGG | - | chr3_1:92741936-92741955 | None:intergenic | 45.0% | |
| !! | AGAACCAGGTATTGGAGCAG+AGG | + | chr3_1:92737591-92737610 | Msa0388310:five_prime_UTR | 50.0% |
| !! | GAACCAGGTATTGGAGCAGA+GGG | + | chr3_1:92737592-92737611 | Msa0388310:five_prime_UTR | 50.0% |
| ! | ACTTCCTCCTCCTCTTTTCC+CGG | + | chr3_1:92737897-92737916 | Msa0388310:CDS | 50.0% |
| CCTTGTCGTTAACCTCACGA+AGG | - | chr3_1:92737932-92737951 | None:intergenic | 50.0% | |
| CCTTCGTGAGGTTAACGACA+AGG | + | chr3_1:92737929-92737948 | Msa0388310:CDS | 50.0% | |
| TCAACAACAGCGAAGGTAGC+AGG | - | chr3_1:92738032-92738051 | None:intergenic | 50.0% | |
| GGCCCTCCTCCTAAATTTGT+AGG | + | chr3_1:92739312-92739331 | Msa0388310:CDS | 50.0% | |
| CCGCCTACAAATTTAGGAGG+AGG | - | chr3_1:92739318-92739337 | None:intergenic | 50.0% | |
| ATGATGCACGCACAGCTGAT+CGG | + | chr3_1:92739382-92739401 | Msa0388310:CDS | 50.0% | |
| ACAAGCGAACCACGAGTTTC+TGG | - | chr3_1:92740056-92740075 | None:intergenic | 50.0% | |
| CAGCTCATCATCCTTCTAGG+AGG | + | chr3_1:92740096-92740115 | Msa0388310:CDS | 50.0% | |
| GTAAATCTCCAGCACCCTTC+CGG | - | chr3_1:92740222-92740241 | None:intergenic | 50.0% | |
| TGACCTGCCATATGCGAGTT+TGG | + | chr3_1:92740622-92740641 | Msa0388310:intron | 50.0% | |
| TCACCAAACTCGCATATGGC+AGG | - | chr3_1:92740628-92740647 | None:intergenic | 50.0% | |
| TCTTCATCTGCGAGGAATGC+CGG | + | chr3_1:92741062-92741081 | Msa0388310:CDS | 50.0% | |
| TCTTGGCCAAGGTAACAGGA+AGG | - | chr3_1:92741355-92741374 | None:intergenic | 50.0% | |
| !! | ACAAGGAGAAGGGCATTGTC+GGG | + | chr3_1:92741461-92741480 | Msa0388310:CDS | 50.0% |
| !! | AAGGGCATTGTCGGGAATGA+CGG | + | chr3_1:92741469-92741488 | Msa0388310:CDS | 50.0% |
| AATGCAGTTGTGGTGCCTGT+TGG | + | chr3_1:92741532-92741551 | Msa0388310:CDS | 50.0% | |
| ATTGCCAAAGCAGCTCCAAC+AGG | - | chr3_1:92741550-92741569 | None:intergenic | 50.0% | |
| GGCGTTCACAGCAAAAGAGT+CGG | + | chr3_1:92741611-92741630 | Msa0388310:CDS | 50.0% | |
| GTTTCAGGCCAAAGAGAACG+TGG | + | chr3_1:92741825-92741844 | Msa0388310:intron | 50.0% | |
| GATGAAGGAGAAGGGTCCGT+CGG | - | chr3_1:92737667-92737686 | None:intergenic | 55.0% | |
| GATCGAACGACCGGGAAAAG+AGG | - | chr3_1:92737910-92737929 | None:intergenic | 55.0% | |
| TCACGAAGGATCGAACGACC+GGG | - | chr3_1:92737918-92737937 | None:intergenic | 55.0% | |
| CTCACGAAGGATCGAACGAC+CGG | - | chr3_1:92737919-92737938 | None:intergenic | 55.0% | |
| ATTCCGGGATGCACTGCATC+AGG | - | chr3_1:92739098-92739117 | None:intergenic | 55.0% | |
| !! | AAGAGGTGCCACGTGGATAC+TGG | + | chr3_1:92740338-92740357 | Msa0388310:CDS | 55.0% |
| !! | AGAGGTGCCACGTGGATACT+GGG | + | chr3_1:92740339-92740358 | Msa0388310:CDS | 55.0% |
| GCTCTTACCCAGTATCCACG+TGG | - | chr3_1:92740349-92740368 | None:intergenic | 55.0% | |
| CTCTGTAGTGCACTTCTGCC+TGG | + | chr3_1:92740396-92740415 | Msa0388310:intron | 55.0% | |
| CTTTCGCAGATGTTCTGCCG+TGG | + | chr3_1:92740822-92740841 | Msa0388310:intron | 55.0% | |
| !! | CTGGTCTTGGCCAAGGTAAC+AGG | - | chr3_1:92741359-92741378 | None:intergenic | 55.0% |
| !! | TGCTTCTCTGGTCTTGGCCA+AGG | - | chr3_1:92741366-92741385 | None:intergenic | 55.0% |
| GAACCAGGACGAGGTCTACA+AGG | + | chr3_1:92741399-92741418 | Msa0388310:CDS | 55.0% | |
| ! | GTCGGGAATGACGGAACTGA+AGG | + | chr3_1:92741478-92741497 | Msa0388310:CDS | 55.0% |
| AACTGAAGGAGCCGCACTTG+AGG | + | chr3_1:92741492-92741511 | Msa0388310:CDS | 55.0% | |
| AGTCGCGACGAATGCAGTTG+TGG | + | chr3_1:92741522-92741541 | Msa0388310:CDS | 55.0% | |
| GTAGCACGCAAGTGCTCCAA+AGG | - | chr3_1:92741590-92741609 | None:intergenic | 55.0% | |
| ! | TTGGAGCACTTGCGTGCTAC+TGG | + | chr3_1:92741590-92741609 | Msa0388310:CDS | 55.0% |
| GGACCCTCTGCTCCAATACC+TGG | - | chr3_1:92737598-92737617 | None:intergenic | 60.0% | |
| ACGACCGGGAAAAGAGGAGG+AGG | - | chr3_1:92737904-92737923 | None:intergenic | 60.0% | |
| CGAACGACCGGGAAAAGAGG+AGG | - | chr3_1:92737907-92737926 | None:intergenic | 60.0% | |
| CGGTCGTTCGATCCTTCGTG+AGG | + | chr3_1:92737917-92737936 | Msa0388310:CDS | 60.0% | |
| GGCACCTGAGAGACAAGCGA+AGG | - | chr3_1:92738927-92738946 | None:intergenic | 60.0% | |
| GGACCTGATGCAGTGCATCC+CGG | + | chr3_1:92739092-92739111 | Msa0388310:CDS | 60.0% | |
| ! | GGAGGGCCCCAAAAGAGCAT+AGG | - | chr3_1:92739300-92739319 | None:intergenic | 60.0% |
| ! | TTCAGATGCCGGAAGGGTGC+TGG | + | chr3_1:92740211-92740230 | Msa0388310:intron | 60.0% |
| !! | TGCGGAAAAGAGGTGCCACG+TGG | + | chr3_1:92740331-92740350 | Msa0388310:CDS | 60.0% |
| CGCATATGGCAGGTCAGCAG+TGG | - | chr3_1:92740618-92740637 | None:intergenic | 60.0% | |
| TCATCTGCGAGGAATGCCGG+CGG | + | chr3_1:92741065-92741084 | Msa0388310:CDS | 60.0% | |
| ! | GAGCCTTGTAGACCTCGTCC+TGG | - | chr3_1:92741405-92741424 | None:intergenic | 60.0% |
| GGTGCCTGTTGGAGCTGCTT+TGG | + | chr3_1:92741543-92741562 | Msa0388310:CDS | 60.0% | |
| GCTGTCGCTAGCTGTGCCTT+TGG | + | chr3_1:92741571-92741590 | Msa0388310:CDS | 60.0% | |
| CTCTCAGGTGCCCTGCTTGC+AGG | + | chr3_1:92738935-92738954 | Msa0388310:intron | 65.0% | |
| CAGGTCAGCAGTGGCCGTCA+CGG | - | chr3_1:92740609-92740628 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 92737564 | 92742212 | 92737564 | ID=Msa0388310;Name=Msa0388310 |
| chr3_1 | mRNA | 92737564 | 92742212 | 92737564 | ID=Msa0388310-mRNA-1;Parent=Msa0388310;Name=Msa0388310-mRNA-1;_AED=0.15;_eAED=0.15;_QI=273|1|1|1|0.90|0.83|12|392|516 |
| chr3_1 | exon | 92737564 | 92738066 | 92737564 | ID=Msa0388310-mRNA-1:exon:26057;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92738942 | 92738966 | 92738942 | ID=Msa0388310-mRNA-1:exon:26058;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92739059 | 92739151 | 92739059 | ID=Msa0388310-mRNA-1:exon:26059;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92739255 | 92739436 | 92739255 | ID=Msa0388310-mRNA-1:exon:26060;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92739717 | 92739786 | 92739717 | ID=Msa0388310-mRNA-1:exon:26061;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92739895 | 92739963 | 92739895 | ID=Msa0388310-mRNA-1:exon:26062;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92740044 | 92740117 | 92740044 | ID=Msa0388310-mRNA-1:exon:26063;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92740216 | 92740360 | 92740216 | ID=Msa0388310-mRNA-1:exon:26064;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92740831 | 92740871 | 92740831 | ID=Msa0388310-mRNA-1:exon:26065;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92740964 | 92741110 | 92740964 | ID=Msa0388310-mRNA-1:exon:26066;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92741198 | 92741683 | 92741198 | ID=Msa0388310-mRNA-1:exon:26067;Parent=Msa0388310-mRNA-1 |
| chr3_1 | exon | 92741832 | 92742212 | 92741832 | ID=Msa0388310-mRNA-1:exon:26068;Parent=Msa0388310-mRNA-1 |
| chr3_1 | five_prime_UTR | 92737564 | 92737836 | 92737564 | ID=Msa0388310-mRNA-1:five_prime_utr;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92737837 | 92738066 | 92737837 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92738942 | 92738966 | 92738942 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92739059 | 92739151 | 92739059 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92739255 | 92739436 | 92739255 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92739717 | 92739786 | 92739717 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92739895 | 92739963 | 92739895 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92740044 | 92740117 | 92740044 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92740216 | 92740360 | 92740216 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92740831 | 92740871 | 92740831 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92740964 | 92741110 | 92740964 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | CDS | 92741198 | 92741672 | 92741198 | ID=Msa0388310-mRNA-1:cds;Parent=Msa0388310-mRNA-1 |
| chr3_1 | three_prime_UTR | 92741673 | 92741683 | 92741673 | ID=Msa0388310-mRNA-1:three_prime_utr;Parent=Msa0388310-mRNA-1 |
| chr3_1 | three_prime_UTR | 92741832 | 92742212 | 92741832 | ID=Msa0388310-mRNA-1:three_prime_utr;Parent=Msa0388310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
