Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092420 | sp|Q9LT31|VPS9A_ARATH | 64.541 | 392 | 121 | 3 | 1 | 375 | 1 | 391 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092420 | G7J457 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092420 | Msa0269550 | 0.842915 | 1.930947e-58 | -8.615850e-47 |
| Msa0092420 | Msa1430540 | 0.829286 | 5.605284e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092420 | MtrunA17_Chr3g0115241 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Msa0092420 | MtrunA17_Chr3g0079541 | 44.271 | 384 | 166 | 5 | 10 | 380 | 13 | 361 | 3.46e-110 | 332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092420 | AT3G19770.1 | 64.541 | 392 | 121 | 3 | 1 | 375 | 1 | 391 | 0.0 | 521 |
| Msa0092420 | AT5G09320.1 | 63.472 | 386 | 121 | 5 | 1 | 375 | 1 | 377 | 5.53e-174 | 496 |
| Msa0092420 | AT3G19770.2 | 60.547 | 256 | 83 | 3 | 137 | 375 | 1 | 255 | 1.09e-100 | 307 |
Find 111 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTCGTGCTCTTCTTTC+AGG | 0.092648 | 1_2:+74848457 | Msa0092420:CDS |
| CTTTCAAGGCTCATCCTCTT+TGG | 0.147130 | 1_2:+74845342 | Msa0092420:CDS |
| CTAAACTGTTGCAAGGTTAT+TGG | 0.183133 | 1_2:+74847203 | Msa0092420:CDS |
| CTATTGTAGCTAGTTCTTAT+AGG | 0.213537 | 1_2:-74849120 | None:intergenic |
| ACAAGACTTTCTTGCTAATA+TGG | 0.214200 | 1_2:+74845313 | Msa0092420:CDS |
| GTTTATTCGACCAGAAAATT+TGG | 0.230820 | 1_2:+74846265 | Msa0092420:CDS |
| GAATGGAGTTTGTACCTTTA+GGG | 0.246408 | 1_2:-74847309 | None:intergenic |
| TTTCAAGGCTCATCCTCTTT+GGG | 0.304407 | 1_2:+74845343 | Msa0092420:CDS |
| AGTTCCATCACTCTCAGATT+TGG | 0.309468 | 1_2:+74848615 | Msa0092420:CDS |
| CTCTCAGATTTGGAGAATAA+AGG | 0.325043 | 1_2:+74848625 | Msa0092420:CDS |
| CCTACACTAGCAAACATATA+TGG | 0.326586 | 1_2:-74848700 | None:intergenic |
| TGCATCAATGTTTGAGATGA+AGG | 0.345631 | 1_2:-74848389 | None:intergenic |
| AGGGGCAAGTATGATAATTA+AGG | 0.358711 | 1_2:+74848645 | Msa0092420:CDS |
| GCTAGTTCTTATAGGTTATG+AGG | 0.365525 | 1_2:-74849112 | None:intergenic |
| GACGCCAATCTCGTTTGGTT+GGG | 0.368934 | 1_2:+74848326 | Msa0092420:CDS |
| AGCTCCGGGAGGATTATCTT+TGG | 0.379653 | 1_2:-74847255 | None:intergenic |
| TCTCAGATTTGGAGAATAAA+GGG | 0.386680 | 1_2:+74848626 | Msa0092420:CDS |
| TTGCTCGTGCTCTTCTTTCA+GGG | 0.402976 | 1_2:+74848458 | Msa0092420:CDS |
| TAATATGGAAGCTGCTTTCA+AGG | 0.406354 | 1_2:+74845328 | Msa0092420:CDS |
| TTTGATTGCTTTGACGAAAT+CGG | 0.409299 | 1_2:-74845144 | None:intergenic |
| AGAAGAGACACCCAATCCTT+TGG | 0.414430 | 1_2:-74848797 | None:intergenic |
| ATCGTTTGTAATTCTTTAGC+AGG | 0.422513 | 1_2:-74848750 | None:intergenic |
| GAGTTATCCTCTGATGTATC+AGG | 0.425915 | 1_2:-74849021 | None:intergenic |
| GTTTAGACGCCAATCTCGTT+TGG | 0.428125 | 1_2:+74848321 | Msa0092420:CDS |
| CTGAGCATTAATTTGAGGAT+TGG | 0.430065 | 1_2:-74848836 | None:intergenic |
| AAGGCTCATCCTCTTTGGGC+TGG | 0.435705 | 1_2:+74845347 | Msa0092420:CDS |
| TTTGGAAAGACACACATACT+TGG | 0.443460 | 1_2:-74848779 | None:intergenic |
| TCCTGCTGAGCATTAATTTG+AGG | 0.443479 | 1_2:-74848841 | None:intergenic |
| GTGTGTCTTTCCAAAGGATT+GGG | 0.451990 | 1_2:+74848787 | Msa0092420:CDS |
| CTCAGTTTCATCCATCGAAA+TGG | 0.455170 | 1_2:-74848416 | None:intergenic |
| AGGAAGAAATTCATCAGCTC+CGG | 0.457159 | 1_2:-74847270 | None:intergenic |
| GTCACTGTCTCTCTCAGGAT+CGG | 0.459367 | 1_2:-74845285 | None:intergenic |
| CTTCCCCAACCAAACGAGAT+TGG | 0.465068 | 1_2:-74848330 | None:intergenic |
| ATACAAGTAAGTTTGTCTCT+TGG | 0.467430 | 1_2:-74847179 | None:intergenic |
| AGACGCCAATCTCGTTTGGT+TGG | 0.468552 | 1_2:+74848325 | Msa0092420:CDS |
| TTTGACGAAATCGGCGGCAG+CGG | 0.469527 | 1_2:-74845135 | None:intergenic |
| CATGATGTTTCGTTCTGAAA+TGG | 0.469832 | 1_2:-74846299 | None:intergenic |
| TGAACAACTTTCAGAGAAGA+TGG | 0.470154 | 1_2:+74846229 | Msa0092420:CDS |
| TCCTCAAATTAATGCTCAGC+AGG | 0.475789 | 1_2:+74848840 | Msa0092420:CDS |
| AATGTTTGAGATGAAGGATT+CGG | 0.475951 | 1_2:-74848383 | None:intergenic |
| TTCAGGTTTGGCACAGGATG+AGG | 0.476857 | 1_2:+74849065 | Msa0092420:CDS |
| GAAAACGCCGACGCTTCCTC+TGG | 0.479356 | 1_2:+74845080 | Msa0092420:CDS |
| CGGGTTGACGCATGCGCTCA+AGG | 0.480136 | 1_2:-74845115 | None:intergenic |
| GATTTGAGTGCAGTTGTGGA+GGG | 0.482098 | 1_2:-74848282 | None:intergenic |
| TTGACGAAATCGGCGGCAGC+GGG | 0.482889 | 1_2:-74845134 | None:intergenic |
| TCACTGTCTCTCTCAGGATC+GGG | 0.494208 | 1_2:-74845284 | None:intergenic |
| CTAGTTCTTATAGGTTATGA+GGG | 0.503046 | 1_2:-74849111 | None:intergenic |
| ATTTCGTCAAAGCAATCAAA+AGG | 0.504467 | 1_2:+74845147 | Msa0092420:CDS |
| TGTGTGTCTTTCCAAAGGAT+TGG | 0.507736 | 1_2:+74848786 | Msa0092420:CDS |
| CAATCCTCAAAATAATGCTC+AGG | 0.511468 | 1_2:+74848921 | Msa0092420:CDS |
| ACGCCAATCTCGTTTGGTTG+GGG | 0.518389 | 1_2:+74848327 | Msa0092420:CDS |
| AGTAGATTTGAGTGCAGTTG+TGG | 0.522864 | 1_2:-74848286 | None:intergenic |
| GATCGCTCGCGTCACTGTGT+CGG | 0.531113 | 1_2:+74845008 | Msa0092420:five_prime_UTR |
| ACGGCGTCACTGTCTCTCTC+AGG | 0.531238 | 1_2:-74845290 | None:intergenic |
| GCTAATCTATGTTACCCTAA+AGG | 0.536558 | 1_2:+74847295 | Msa0092420:CDS |
| AAGTGATTCAGGTTTGGCAC+AGG | 0.537557 | 1_2:+74849059 | Msa0092420:CDS |
| TTCTCCAAATCTGAGAGTGA+TGG | 0.537645 | 1_2:-74848619 | None:intergenic |
| ACACTGTCTGTGTAAACTGT+TGG | 0.540292 | 1_2:-74845053 | None:intergenic |
| TCAGAACGAAACATCATGGT+TGG | 0.544171 | 1_2:+74846304 | Msa0092420:CDS |
| GCTTCCAAAGATAATCCTCC+CGG | 0.544270 | 1_2:+74847251 | Msa0092420:CDS |
| GCATTAATTTGAGGATTGGA+TGG | 0.545127 | 1_2:-74848832 | None:intergenic |
| AAGTATGTGTGTCTTTCCAA+AGG | 0.547865 | 1_2:+74848781 | Msa0092420:CDS |
| GGAGGCTAACCCTCTGGAAA+GGG | 0.548700 | 1_2:-74848875 | None:intergenic |
| AGGAGATGACATAGTGATAG+TGG | 0.549356 | 1_2:-74849260 | None:intergenic |
| CCATATATGTTTGCTAGTGT+AGG | 0.550230 | 1_2:+74848700 | Msa0092420:CDS |
| AGGGTAACATAGATTAGCAC+AGG | 0.551339 | 1_2:-74847290 | None:intergenic |
| AGGAGGCTAACCCTCTGGAA+AGG | 0.552204 | 1_2:-74848876 | None:intergenic |
| CATTTCAGAACGAAACATCA+TGG | 0.552754 | 1_2:+74846300 | Msa0092420:CDS |
| AGATTTGAGTGCAGTTGTGG+AGG | 0.554178 | 1_2:-74848283 | None:intergenic |
| AGAGGAGGAGGCTAACCCTC+TGG | 0.554787 | 1_2:-74848881 | None:intergenic |
| AGTTTACACAGACAGTGTAA+TGG | 0.561442 | 1_2:+74845058 | Msa0092420:exon |
| GGATGGAACATGAGATGAAG+AGG | 0.561692 | 1_2:-74848899 | None:intergenic |
| TGGAACATGAGATGAAGAGG+AGG | 0.562317 | 1_2:-74848896 | None:intergenic |
| GGAAGAAATTCATCAGCTCC+GGG | 0.564520 | 1_2:-74847269 | None:intergenic |
| TGACATAGTGATAGTGGTCA+TGG | 0.567790 | 1_2:-74849254 | None:intergenic |
| ACGGAAGAAACTAACTTCAC+CGG | 0.568114 | 1_2:-74845396 | None:intergenic |
| TTGTATTCTAAACTGTTGCA+AGG | 0.570078 | 1_2:+74847196 | Msa0092420:CDS |
| AACATGAGATGAAGAGGAGG+AGG | 0.575942 | 1_2:-74848893 | None:intergenic |
| GAGGCAGCTGCACCAGAGGG+TGG | 0.577158 | 1_2:+74849084 | Msa0092420:CDS |
| GGCAAGTATGATAATTAAGG+AGG | 0.579130 | 1_2:+74848648 | Msa0092420:CDS |
| TTGTGGTCTCACTCTTAACA+TGG | 0.581797 | 1_2:-74848945 | None:intergenic |
| TGATGCAAATGCCATTTCGA+TGG | 0.585306 | 1_2:+74848405 | Msa0092420:CDS |
| GATGATGAACTCGAAAGTGC+CGG | 0.587723 | 1_2:+74845377 | Msa0092420:CDS |
| CTCTGGAAAGGGTTTCAACA+TGG | 0.588017 | 1_2:-74848864 | None:intergenic |
| GGATGAGGCAGCTGCACCAG+AGG | 0.592274 | 1_2:+74849080 | Msa0092420:CDS |
| CAAATCTACTGTACATACAA+AGG | 0.593182 | 1_2:+74848299 | Msa0092420:CDS |
| GATGTTTCGTTCTGAAATGG+TGG | 0.597900 | 1_2:-74846296 | None:intergenic |
| ACAATAGATTCTTCAGACAA+TGG | 0.598478 | 1_2:+74848964 | Msa0092420:CDS |
| TGGAACTGAAGCAAATACAC+GGG | 0.606683 | 1_2:-74846189 | None:intergenic |
| ATTAGCAAGAAAGTCTTGTA+CGG | 0.609996 | 1_2:-74845309 | None:intergenic |
| CTGGAACTGAAGCAAATACA+CGG | 0.612874 | 1_2:-74846190 | None:intergenic |
| GATGAGGCAGCTGCACCAGA+GGG | 0.615534 | 1_2:+74849081 | Msa0092420:CDS |
| AAAAGGACAGTTACCACACA+AGG | 0.616602 | 1_2:-74849215 | None:intergenic |
| CATGTTGAAACCCTTTCCAG+AGG | 0.617877 | 1_2:+74848865 | Msa0092420:CDS |
| ATGTTGAAACCCTTTCCAGA+GGG | 0.618383 | 1_2:+74848866 | Msa0092420:CDS |
| ACAGAAGATCAACATGTACA+AGG | 0.620589 | 1_2:+74847154 | Msa0092420:CDS |
| AACTGAGTTTGAGAGAAACA+TGG | 0.628613 | 1_2:+74848432 | Msa0092420:CDS |
| TCAGAGCAACCAGCCCAAAG+AGG | 0.635777 | 1_2:-74845356 | None:intergenic |
| TAGTTCTTATAGGTTATGAG+GGG | 0.640645 | 1_2:-74849110 | None:intergenic |
| ATTGTCTGAAGAATCTATTG+TGG | 0.654771 | 1_2:-74848962 | None:intergenic |
| AAAGTCTCCTGATACATCAG+AGG | 0.656909 | 1_2:+74849014 | Msa0092420:CDS |
| CTCAGATTTGGAGAATAAAG+GGG | 0.658898 | 1_2:+74848627 | Msa0092420:CDS |
| GTTTAAGAATAATGTTACAG+AGG | 0.659041 | 1_2:-74849280 | None:intergenic |
| AAGGACAGTTACCACACAAG+GGG | 0.659236 | 1_2:-74849213 | None:intergenic |
| AAAGGACAGTTACCACACAA+GGG | 0.671725 | 1_2:-74849214 | None:intergenic |
| GTGTAAACCAGAGGAAGCGT+CGG | 0.675079 | 1_2:-74845087 | None:intergenic |
| AAGGAAGTCGTGTAAACCAG+AGG | 0.678101 | 1_2:-74845096 | None:intergenic |
| AGTTCTTATAGGTTATGAGG+GGG | 0.679075 | 1_2:-74849109 | None:intergenic |
| GATTGCTTTGACGAAATCGG+CGG | 0.701074 | 1_2:-74845141 | None:intergenic |
| AGAAATTCATCAGCTCCGGG+AGG | 0.733938 | 1_2:-74847266 | None:intergenic |
| GGAACTGAAGCAAATACACG+GGG | 0.751718 | 1_2:-74846188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATGAAAATAAGAATA+CGG | - | chr1_2:74845418-74845437 | None:intergenic | 10.0% |
| !! | AAATTAAATATCTTCAATTA+TGG | - | chr1_2:74845459-74845478 | None:intergenic | 10.0% |
| !!! | ATATTTTATCATTAGAAAAA+AGG | + | chr1_2:74846403-74846422 | Msa0092420:intron | 10.0% |
| !!! | AAATAACTAGTTTGTTAATT+AGG | + | chr1_2:74845640-74845659 | Msa0092420:intron | 15.0% |
| !! | TATGTATTTCTTAATAACTT+TGG | - | chr1_2:74846592-74846611 | None:intergenic | 15.0% |
| !! | TTATTTACAAACTAATATTG+TGG | - | chr1_2:74846954-74846973 | None:intergenic | 15.0% |
| !!! | GTCAAAATTGTAATTTTTAT+TGG | - | chr1_2:74847046-74847065 | None:intergenic | 15.0% |
| !! | AGAGAGAATATAAAATTTAA+GGG | - | chr1_2:74847100-74847119 | None:intergenic | 15.0% |
| !! | ATTATTTATTAGAAAAGTGA+AGG | - | chr1_2:74847626-74847645 | None:intergenic | 15.0% |
| !!! | TTCACTTTTCTAATAAATAA+TGG | + | chr1_2:74847625-74847644 | Msa0092420:intron | 15.0% |
| !!! | TCACTTTTCTAATAAATAAT+GGG | + | chr1_2:74847626-74847645 | Msa0092420:intron | 15.0% |
| !! | TAAAATATATGCATATTTGT+GGG | - | chr1_2:74847879-74847898 | None:intergenic | 15.0% |
| !! | ATAAAATATATGCATATTTG+TGG | - | chr1_2:74847880-74847899 | None:intergenic | 15.0% |
| !! | AGTAAAAGAAAAAAAAAAGA+GGG | - | chr1_2:74849165-74849184 | None:intergenic | 15.0% |
| !! | GGTATATTATGATTGAAAAT+GGG | - | chr1_2:74846066-74846085 | None:intergenic | 20.0% |
| !! | TGGTATATTATGATTGAAAA+TGG | - | chr1_2:74846067-74846086 | None:intergenic | 20.0% |
| !! | GATAAAATATTGTTATCGTT+GGG | - | chr1_2:74846393-74846412 | None:intergenic | 20.0% |
| !! | TGATAAAATATTGTTATCGT+TGG | - | chr1_2:74846394-74846413 | None:intergenic | 20.0% |
| !!! | TTTAAAACTGAACTAAAAGA+CGG | - | chr1_2:74846520-74846539 | None:intergenic | 20.0% |
| !!! | AATTGAATCAATTGATTCTT+AGG | - | chr1_2:74846899-74846918 | None:intergenic | 20.0% |
| !!! | TTACAATTTTGACTTGTTAA+TGG | + | chr1_2:74847053-74847072 | Msa0092420:intron | 20.0% |
| !! | GAGAGAGAATATAAAATTTA+AGG | - | chr1_2:74847101-74847120 | None:intergenic | 20.0% |
| !! | GGAATATATATAATGAAGAA+TGG | - | chr1_2:74847329-74847348 | None:intergenic | 20.0% |
| !!! | GGAATAAAATGTTTTGTAAA+AGG | - | chr1_2:74847372-74847391 | None:intergenic | 20.0% |
| !!! | TACAAAACATTTTATTCCAA+TGG | + | chr1_2:74847374-74847393 | Msa0092420:intron | 20.0% |
| !! | GTATTAATAAGGGAAATATT+TGG | - | chr1_2:74847463-74847482 | None:intergenic | 20.0% |
| !! | CCTATAAAGTGTATTAATAA+GGG | - | chr1_2:74847473-74847492 | None:intergenic | 20.0% |
| !! | TCCTATAAAGTGTATTAATA+AGG | - | chr1_2:74847474-74847493 | None:intergenic | 20.0% |
| !!! | GGAAGTAATAAAAACATTTT+TGG | - | chr1_2:74847605-74847624 | None:intergenic | 20.0% |
| !!! | TTTTCTAATAAATAATGGGT+AGG | + | chr1_2:74847630-74847649 | Msa0092420:intron | 20.0% |
| !!! | TTGATAGCAAAATATTTCAA+AGG | - | chr1_2:74847978-74847997 | None:intergenic | 20.0% |
| !!! | ATATTCCTAAACTCTATTTT+AGG | + | chr1_2:74848183-74848202 | Msa0092420:intron | 20.0% |
| !!! | TTTTAAGAAAAGTCTTCTAT+TGG | + | chr1_2:74848241-74848260 | Msa0092420:intron | 20.0% |
| !! | GTAAAAGAAAAAAAAAAGAG+GGG | - | chr1_2:74849164-74849183 | None:intergenic | 20.0% |
| !! | GAGTAAAAGAAAAAAAAAAG+AGG | - | chr1_2:74849166-74849185 | None:intergenic | 20.0% |
| !!! | TACAAGAGAAATTTTGAATT+TGG | + | chr1_2:74849318-74849337 | Msa0092420:three_prime_UTR | 20.0% |
| ! | TTGAAATTAAGATGGTGAAT+AGG | - | chr1_2:74845185-74845204 | None:intergenic | 25.0% |
| ! | ATGTATCAGTGAATTGATTA+GGG | - | chr1_2:74845214-74845233 | None:intergenic | 25.0% |
| ! | AATGTATCAGTGAATTGATT+AGG | - | chr1_2:74845215-74845234 | None:intergenic | 25.0% |
| !! | ATAGTTTCGTTTTCAAATCA+TGG | + | chr1_2:74845260-74845279 | Msa0092420:CDS | 25.0% |
| !! | TTAATTGTTTAAAACACGAG+TGG | + | chr1_2:74845584-74845603 | Msa0092420:intron | 25.0% |
| ! | TTAAGCTATTTATCCAAACA+AGG | - | chr1_2:74845666-74845685 | None:intergenic | 25.0% |
| !! | GCAGTATATAAGTTCTAATA+AGG | + | chr1_2:74845830-74845849 | Msa0092420:intron | 25.0% |
| !! | CCTTATTTGATCTTATTTAC+TGG | - | chr1_2:74845869-74845888 | None:intergenic | 25.0% |
| ! | CCAGTAAATAAGATCAAATA+AGG | + | chr1_2:74845866-74845885 | Msa0092420:intron | 25.0% |
| ! | CTAACTAACCTATTAACTAA+GGG | - | chr1_2:74845908-74845927 | None:intergenic | 25.0% |
| ! | TCTAACTAACCTATTAACTA+AGG | - | chr1_2:74845909-74845928 | None:intergenic | 25.0% |
| ! | ATAACTCATCCCTATTTATA+GGG | - | chr1_2:74845969-74845988 | None:intergenic | 25.0% |
| ! | AATAACTCATCCCTATTTAT+AGG | - | chr1_2:74845970-74845989 | None:intergenic | 25.0% |
| ! | TTCAATCATAATATACCAGT+TGG | + | chr1_2:74846069-74846088 | Msa0092420:intron | 25.0% |
| ! | AGCAATCAATCAGAAAATAT+AGG | - | chr1_2:74846107-74846126 | None:intergenic | 25.0% |
| ! | TCATTGAACATAATTACACA+TGG | - | chr1_2:74846433-74846452 | None:intergenic | 25.0% |
| ! | AATTATGTTCAATGAATGCT+AGG | + | chr1_2:74846438-74846457 | Msa0092420:intron | 25.0% |
| ! | TTAAAACTGAACTAAAAGAC+GGG | - | chr1_2:74846519-74846538 | None:intergenic | 25.0% |
| !! | AAATGCAACTGTATACTTTT+TGG | + | chr1_2:74846539-74846558 | Msa0092420:intron | 25.0% |
| ! | GAAAATATGTTAGTTGAGTA+GGG | - | chr1_2:74846636-74846655 | None:intergenic | 25.0% |
| ! | AGAAAATATGTTAGTTGAGT+AGG | - | chr1_2:74846637-74846656 | None:intergenic | 25.0% |
| !! | TAACATATTTTCTCTGACAT+GGG | + | chr1_2:74846644-74846663 | Msa0092420:intron | 25.0% |
| ! | ATTTAAATTGAGTGGTTCTT+GGG | + | chr1_2:74846792-74846811 | Msa0092420:intron | 25.0% |
| !!! | TTGGGTATTTCAATGTTTTT+TGG | + | chr1_2:74846810-74846829 | Msa0092420:intron | 25.0% |
| !!! | TATTCAGTTTGTTCTAAAGT+TGG | + | chr1_2:74846842-74846861 | Msa0092420:intron | 25.0% |
| ! | TAAATAATGATTGCCAATTG+TGG | + | chr1_2:74846967-74846986 | Msa0092420:intron | 25.0% |
| ! | AAATAATGATTGCCAATTGT+GGG | + | chr1_2:74846968-74846987 | Msa0092420:intron | 25.0% |
| ! | ATATAAAATTTAAGGGATGC+AGG | - | chr1_2:74847093-74847112 | None:intergenic | 25.0% |
| ! | TATATTCTCTCTCATTCTTA+TGG | + | chr1_2:74847108-74847127 | Msa0092420:intron | 25.0% |
| !! | TTGTAAAAGGCCTTATAATT+AGG | - | chr1_2:74847359-74847378 | None:intergenic | 25.0% |
| ! | CCCTTATTAATACACTTTAT+AGG | + | chr1_2:74847470-74847489 | Msa0092420:intron | 25.0% |
| !! | ATCATGGGTCTTATATATAT+GGG | - | chr1_2:74847500-74847519 | None:intergenic | 25.0% |
| !! | AATCATGGGTCTTATATATA+TGG | - | chr1_2:74847501-74847520 | None:intergenic | 25.0% |
| ! | CTTGTCGTATAGAATTAATT+TGG | + | chr1_2:74847576-74847595 | Msa0092420:intron | 25.0% |
| ! | GCAAAATATTTCAAAGGAAA+AGG | - | chr1_2:74847972-74847991 | None:intergenic | 25.0% |
| ! | ATGTGATGAAACTAGATAAA+TGG | + | chr1_2:74848027-74848046 | Msa0092420:intron | 25.0% |
| ! | TTTAGTGCATCATTGAATTT+AGG | + | chr1_2:74848098-74848117 | Msa0092420:intron | 25.0% |
| ! | TAACTTTATCCACATGAAAA+TGG | - | chr1_2:74848211-74848230 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGGTGAATT+GGG | - | chr1_2:74848505-74848524 | None:intergenic | 25.0% |
| !!! | ATGATTTTGATAAGGTGAAT+TGG | - | chr1_2:74848506-74848525 | None:intergenic | 25.0% |
| !!! | ATAAGTTGAATGATGTTTTC+AGG | + | chr1_2:74848671-74848690 | Msa0092420:CDS | 25.0% |
| !!! | TAAGTTGAATGATGTTTTCA+GGG | + | chr1_2:74848672-74848691 | Msa0092420:CDS | 25.0% |
| !! | AGACTTTTCTGATTTTTCAT+TGG | - | chr1_2:74849001-74849020 | None:intergenic | 25.0% |
| !!! | GCATTGTCATTTTTATCAAA+AGG | - | chr1_2:74849235-74849254 | None:intergenic | 25.0% |
| ! | GTTTAAGAATAATGTTACAG+AGG | - | chr1_2:74849283-74849302 | None:intergenic | 25.0% |
| AAAAATAACAAGTGACGTGT+TGG | + | chr1_2:74844986-74845005 | Msa0092420:five_prime_UTR | 30.0% | |
| TTTGATTGCTTTGACGAAAT+CGG | - | chr1_2:74845147-74845166 | None:intergenic | 30.0% | |
| ATTTCGTCAAAGCAATCAAA+AGG | + | chr1_2:74845147-74845166 | Msa0092420:CDS | 30.0% | |
| ! | ATTAGCAAGAAAGTCTTGTA+CGG | - | chr1_2:74845312-74845331 | None:intergenic | 30.0% |
| ACAAGACTTTCTTGCTAATA+TGG | + | chr1_2:74845313-74845332 | Msa0092420:CDS | 30.0% | |
| !! | TTTGTTAATTAGGCCTTGTT+TGG | + | chr1_2:74845650-74845669 | Msa0092420:intron | 30.0% |
| ! | ATCTTATTTACTGGTCTGTT+TGG | - | chr1_2:74845860-74845879 | None:intergenic | 30.0% |
| TAGCACTGTTTGTAATCAAA+GGG | + | chr1_2:74846032-74846051 | Msa0092420:intron | 30.0% | |
| ! | TCATCATGTTTTACATCATC+TGG | - | chr1_2:74846212-74846231 | None:intergenic | 30.0% |
| GTTTATTCGACCAGAAAATT+TGG | + | chr1_2:74846265-74846284 | Msa0092420:CDS | 30.0% | |
| TTGATATTGCTACATTGGAT+TGG | - | chr1_2:74846472-74846491 | None:intergenic | 30.0% | |
| TGAGTTTGATATTGCTACAT+TGG | - | chr1_2:74846477-74846496 | None:intergenic | 30.0% | |
| ! | CTAACATATTTTCTCTGACA+TGG | + | chr1_2:74846643-74846662 | Msa0092420:intron | 30.0% |
| AAATGTTGACAGAAAACGAA+TGG | - | chr1_2:74846761-74846780 | None:intergenic | 30.0% | |
| CCACTCAATTTAAATGCATT+TGG | - | chr1_2:74846787-74846806 | None:intergenic | 30.0% | |
| CCAAATGCATTTAAATTGAG+TGG | + | chr1_2:74846784-74846803 | Msa0092420:intron | 30.0% | |
| CATTTAAATTGAGTGGTTCT+TGG | + | chr1_2:74846791-74846810 | Msa0092420:intron | 30.0% | |
| !! | AGTTTGTTCTAAAGTTGGAT+AGG | + | chr1_2:74846847-74846866 | Msa0092420:intron | 30.0% |
| ! | ATTGATTCTTAGGAAAAGCT+TGG | - | chr1_2:74846889-74846908 | None:intergenic | 30.0% |
| AAGTGCTAGAAAAATTCTTC+TGG | + | chr1_2:74846994-74847013 | Msa0092420:intron | 30.0% | |
| !!! | TGGAGTTGTCTTTTTTATGA+AGG | + | chr1_2:74847014-74847033 | Msa0092420:intron | 30.0% |
| !!! | TGTCTTTTTTATGAAGGCTT+TGG | + | chr1_2:74847020-74847039 | Msa0092420:intron | 30.0% |
| ATACAAGTAAGTTTGTCTCT+TGG | - | chr1_2:74847182-74847201 | None:intergenic | 30.0% | |
| TTGTATTCTAAACTGTTGCA+AGG | + | chr1_2:74847196-74847215 | Msa0092420:CDS | 30.0% | |
| ! | AAAGGCCTTATAATTAGGAA+CGG | - | chr1_2:74847354-74847373 | None:intergenic | 30.0% |
| TGCATCTACAAATTTGTAGA+GGG | - | chr1_2:74847427-74847446 | None:intergenic | 30.0% | |
| ATGCATCTACAAATTTGTAG+AGG | - | chr1_2:74847428-74847447 | None:intergenic | 30.0% | |
| ! | TAAGACCCATGATTTTTGTT+AGG | + | chr1_2:74847507-74847526 | Msa0092420:intron | 30.0% |
| GACATCCTAACAAAAATCAT+GGG | - | chr1_2:74847515-74847534 | None:intergenic | 30.0% | |
| ! | AGTAAAAGTATGGGAATGAT+AGG | - | chr1_2:74847679-74847698 | None:intergenic | 30.0% |
| ! | AAGTGGCAAAGTAAAAGTAT+GGG | - | chr1_2:74847688-74847707 | None:intergenic | 30.0% |
| AAAGTGGCAAAGTAAAAGTA+TGG | - | chr1_2:74847689-74847708 | None:intergenic | 30.0% | |
| TACTGAAAAACAAAGCAAAG+TGG | - | chr1_2:74847705-74847724 | None:intergenic | 30.0% | |
| ! | GCAAACTTTATTTGTACAAG+TGG | - | chr1_2:74847736-74847755 | None:intergenic | 30.0% |
| AAATATCATCTTGCAAACAC+TGG | + | chr1_2:74847826-74847845 | Msa0092420:intron | 30.0% | |
| ATGCATATTTGTGGGTAATA+TGG | - | chr1_2:74847871-74847890 | None:intergenic | 30.0% | |
| ! | AATGTCTTTTGAACTTCTCA+TGG | + | chr1_2:74847936-74847955 | Msa0092420:intron | 30.0% |
| CAAATCTACTGTACATACAA+AGG | + | chr1_2:74848299-74848318 | Msa0092420:CDS | 30.0% | |
| ! | AATGTTTGAGATGAAGGATT+CGG | - | chr1_2:74848386-74848405 | None:intergenic | 30.0% |
| !! | TGCTGTACATGATTTTGATA+AGG | - | chr1_2:74848514-74848533 | None:intergenic | 30.0% |
| ! | TCTAATTTTGCATCAGATGA+TGG | - | chr1_2:74848553-74848572 | None:intergenic | 30.0% |
| TCTCAGATTTGGAGAATAAA+GGG | + | chr1_2:74848626-74848645 | Msa0092420:CDS | 30.0% | |
| ATCGTTTGTAATTCTTTAGC+AGG | - | chr1_2:74848753-74848772 | None:intergenic | 30.0% | |
| ATTGTCTGAAGAATCTATTG+TGG | - | chr1_2:74848965-74848984 | None:intergenic | 30.0% | |
| ACAATAGATTCTTCAGACAA+TGG | + | chr1_2:74848964-74848983 | Msa0092420:CDS | 30.0% | |
| !!! | CTGAATCACTTTTTTTCTCA+GGG | - | chr1_2:74849050-74849069 | None:intergenic | 30.0% |
| ! | GAAAAAAAGTGATTCAGGTT+TGG | + | chr1_2:74849053-74849072 | Msa0092420:CDS | 30.0% |
| TAGTTCTTATAGGTTATGAG+GGG | - | chr1_2:74849113-74849132 | None:intergenic | 30.0% | |
| ! | CTAGTTCTTATAGGTTATGA+GGG | - | chr1_2:74849114-74849133 | None:intergenic | 30.0% |
| ! | CTATTGTAGCTAGTTCTTAT+AGG | - | chr1_2:74849123-74849142 | None:intergenic | 30.0% |
| ! | AAAAAAGAGGGGTATATGAT+GGG | - | chr1_2:74849153-74849172 | None:intergenic | 30.0% |
| ! | AAAAAAAGAGGGGTATATGA+TGG | - | chr1_2:74849154-74849173 | None:intergenic | 30.0% |
| AGTTTACACAGACAGTGTAA+TGG | + | chr1_2:74845058-74845077 | Msa0092420:exon | 35.0% | |
| TTAAGATGGTGAATAGGAGA+AGG | - | chr1_2:74845179-74845198 | None:intergenic | 35.0% | |
| GGTTCGGATTGAAATTAAGA+TGG | - | chr1_2:74845193-74845212 | None:intergenic | 35.0% | |
| TCAGTGAATTGATTAGGGTT+CGG | - | chr1_2:74845209-74845228 | None:intergenic | 35.0% | |
| ! | TAATATGGAAGCTGCTTTCA+AGG | + | chr1_2:74845328-74845347 | Msa0092420:CDS | 35.0% |
| ! | CTACATCTACATTGCAGTTT+TGG | + | chr1_2:74845552-74845571 | Msa0092420:intron | 35.0% |
| !! | CATTGCAGTTTTGGCAATAA+TGG | + | chr1_2:74845561-74845580 | Msa0092420:intron | 35.0% |
| AATCACTTATGAGACTGTCT+GGG | - | chr1_2:74845807-74845826 | None:intergenic | 35.0% | |
| TAATCACTTATGAGACTGTC+TGG | - | chr1_2:74845808-74845827 | None:intergenic | 35.0% | |
| ACTAACCTATTAACTAAGGG+TGG | - | chr1_2:74845905-74845924 | None:intergenic | 35.0% | |
| AAAGATAGTTAGGCCAAACA+AGG | + | chr1_2:74845937-74845956 | Msa0092420:intron | 35.0% | |
| ATAGGGATGAGTTATTAGTG+AGG | + | chr1_2:74845974-74845993 | Msa0092420:intron | 35.0% | |
| TAGGGATGAGTTATTAGTGA+GGG | + | chr1_2:74845975-74845994 | Msa0092420:intron | 35.0% | |
| CTAGCACTGTTTGTAATCAA+AGG | + | chr1_2:74846031-74846050 | Msa0092420:intron | 35.0% | |
| AGCACTGTTTGTAATCAAAG+GGG | + | chr1_2:74846033-74846052 | Msa0092420:intron | 35.0% | |
| TGAACAACTTTCAGAGAAGA+TGG | + | chr1_2:74846229-74846248 | Msa0092420:CDS | 35.0% | |
| !! | CATGATGTTTCGTTCTGAAA+TGG | - | chr1_2:74846302-74846321 | None:intergenic | 35.0% |
| CATTTCAGAACGAAACATCA+TGG | + | chr1_2:74846300-74846319 | Msa0092420:CDS | 35.0% | |
| TTCTCCGTGTTACACATTAT+AGG | + | chr1_2:74846733-74846752 | Msa0092420:intron | 35.0% | |
| GGTACCTATAATGTGTAACA+CGG | - | chr1_2:74846740-74846759 | None:intergenic | 35.0% | |
| ! | TTTTCAATTTGATGCACCAC+TGG | + | chr1_2:74846917-74846936 | Msa0092420:intron | 35.0% |
| TTTCAATTTGATGCACCACT+GGG | + | chr1_2:74846918-74846937 | Msa0092420:intron | 35.0% | |
| ACAGAAGATCAACATGTACA+AGG | + | chr1_2:74847154-74847173 | Msa0092420:CDS | 35.0% | |
| CTAAACTGTTGCAAGGTTAT+TGG | + | chr1_2:74847203-74847222 | Msa0092420:CDS | 35.0% | |
| GCTAATCTATGTTACCCTAA+AGG | + | chr1_2:74847295-74847314 | Msa0092420:CDS | 35.0% | |
| GAATGGAGTTTGTACCTTTA+GGG | - | chr1_2:74847312-74847331 | None:intergenic | 35.0% | |
| AGAATGGAGTTTGTACCTTT+AGG | - | chr1_2:74847313-74847332 | None:intergenic | 35.0% | |
| ! | TGTAGAGGGTCTTATATCTA+GGG | - | chr1_2:74847413-74847432 | None:intergenic | 35.0% |
| ! | TTGTAGAGGGTCTTATATCT+AGG | - | chr1_2:74847414-74847433 | None:intergenic | 35.0% |
| GGACATCCTAACAAAAATCA+TGG | - | chr1_2:74847516-74847535 | None:intergenic | 35.0% | |
| TGTTAGGATGTCCTATAAAG+AGG | + | chr1_2:74847523-74847542 | Msa0092420:intron | 35.0% | |
| GTTAGGATGTCCTATAAAGA+GGG | + | chr1_2:74847524-74847543 | Msa0092420:intron | 35.0% | |
| GTAGGACTTACGAATATGTA+GGG | + | chr1_2:74847648-74847667 | Msa0092420:intron | 35.0% | |
| ! | TCATGTGACTTTTGTACAAC+AGG | + | chr1_2:74847781-74847800 | Msa0092420:intron | 35.0% |
| TACAACAGGACAATGTTCAA+CGG | + | chr1_2:74847795-74847814 | Msa0092420:intron | 35.0% | |
| TATGGTTATGCTGTGATGAA+TGG | - | chr1_2:74847853-74847872 | None:intergenic | 35.0% | |
| TGGCACCTAAAATAGAGTTT+AGG | - | chr1_2:74848191-74848210 | None:intergenic | 35.0% | |
| !!! | TTTTAGGTGCCATTTTCATG+TGG | + | chr1_2:74848199-74848218 | Msa0092420:intron | 35.0% |
| ! | TTCTATTGGTGATACTATGC+AGG | + | chr1_2:74848255-74848274 | Msa0092420:intron | 35.0% |
| ! | TGCATCAATGTTTGAGATGA+AGG | - | chr1_2:74848392-74848411 | None:intergenic | 35.0% |
| AACTGAGTTTGAGAGAAACA+TGG | + | chr1_2:74848432-74848451 | Msa0092420:CDS | 35.0% | |
| CTCTCAGATTTGGAGAATAA+AGG | + | chr1_2:74848625-74848644 | Msa0092420:CDS | 35.0% | |
| CTCAGATTTGGAGAATAAAG+GGG | + | chr1_2:74848627-74848646 | Msa0092420:CDS | 35.0% | |
| AGGGGCAAGTATGATAATTA+AGG | + | chr1_2:74848645-74848664 | Msa0092420:CDS | 35.0% | |
| GGCAAGTATGATAATTAAGG+AGG | + | chr1_2:74848648-74848667 | Msa0092420:CDS | 35.0% | |
| CCTACACTAGCAAACATATA+TGG | - | chr1_2:74848703-74848722 | None:intergenic | 35.0% | |
| ! | CCATATATGTTTGCTAGTGT+AGG | + | chr1_2:74848700-74848719 | Msa0092420:CDS | 35.0% |
| TTTGGAAAGACACACATACT+TGG | - | chr1_2:74848782-74848801 | None:intergenic | 35.0% | |
| AAGTATGTGTGTCTTTCCAA+AGG | + | chr1_2:74848781-74848800 | Msa0092420:CDS | 35.0% | |
| ! | GCATTAATTTGAGGATTGGA+TGG | - | chr1_2:74848835-74848854 | None:intergenic | 35.0% |
| ! | CTGAGCATTAATTTGAGGAT+TGG | - | chr1_2:74848839-74848858 | None:intergenic | 35.0% |
| !!! | GCATTATTTTGAGGATTGGA+TGG | - | chr1_2:74848919-74848938 | None:intergenic | 35.0% |
| !!! | CTGAGCATTATTTTGAGGAT+TGG | - | chr1_2:74848923-74848942 | None:intergenic | 35.0% |
| CAATCCTCAAAATAATGCTC+AGG | + | chr1_2:74848921-74848940 | Msa0092420:CDS | 35.0% | |
| ! | GATTTTTCATTGGAAGCTAC+AGG | - | chr1_2:74848991-74849010 | None:intergenic | 35.0% |
| !!! | CCTGAATCACTTTTTTTCTC+AGG | - | chr1_2:74849051-74849070 | None:intergenic | 35.0% |
| CCTGAGAAAAAAAGTGATTC+AGG | + | chr1_2:74849048-74849067 | Msa0092420:CDS | 35.0% | |
| AGTTCTTATAGGTTATGAGG+GGG | - | chr1_2:74849112-74849131 | None:intergenic | 35.0% | |
| ! | GCTAGTTCTTATAGGTTATG+AGG | - | chr1_2:74849115-74849134 | None:intergenic | 35.0% |
| ! | ATTTTAGATTTCCCCTTGTG+TGG | + | chr1_2:74849202-74849221 | Msa0092420:three_prime_UTR | 35.0% |
| ACACTGTCTGTGTAAACTGT+TGG | - | chr1_2:74845056-74845075 | None:intergenic | 40.0% | |
| TTTCAAGGCTCATCCTCTTT+GGG | + | chr1_2:74845343-74845362 | Msa0092420:CDS | 40.0% | |
| ACGGAAGAAACTAACTTCAC+CGG | - | chr1_2:74845399-74845418 | None:intergenic | 40.0% | |
| ACAGTCCACCCTTAGTTAAT+AGG | + | chr1_2:74845897-74845916 | Msa0092420:intron | 40.0% | |
| ! | GAGAGCGTGTAAAGATAGTT+AGG | + | chr1_2:74845927-74845946 | Msa0092420:intron | 40.0% |
| AAGGCATGCTCCCTATAAAT+AGG | + | chr1_2:74845956-74845975 | Msa0092420:intron | 40.0% | |
| AGGCATGCTCCCTATAAATA+GGG | + | chr1_2:74845957-74845976 | Msa0092420:intron | 40.0% | |
| AGGGATGAGTTATTAGTGAG+GGG | + | chr1_2:74845976-74845995 | Msa0092420:intron | 40.0% | |
| TGAGGGGATTATCTTGTCAT+TGG | + | chr1_2:74845992-74846011 | Msa0092420:intron | 40.0% | |
| GAGGGGATTATCTTGTCATT+GGG | + | chr1_2:74845993-74846012 | Msa0092420:intron | 40.0% | |
| AAACAGTGCTAGCACTTCAA+GGG | - | chr1_2:74846023-74846042 | None:intergenic | 40.0% | |
| AGGAAACTGATAGAACCAAC+TGG | - | chr1_2:74846087-74846106 | None:intergenic | 40.0% | |
| TGATTGATTGCTCTTACCTC+TGG | + | chr1_2:74846115-74846134 | Msa0092420:intron | 40.0% | |
| GATTGATTGCTCTTACCTCT+GGG | + | chr1_2:74846116-74846135 | Msa0092420:intron | 40.0% | |
| TGTACATGATCAAAACCCAG+AGG | - | chr1_2:74846134-74846153 | None:intergenic | 40.0% | |
| !! | TCTGGGTTTTGATCATGTAC+AGG | + | chr1_2:74846133-74846152 | Msa0092420:intron | 40.0% |
| !! | CTGGGTTTTGATCATGTACA+GGG | + | chr1_2:74846134-74846153 | Msa0092420:intron | 40.0% |
| TGGAACTGAAGCAAATACAC+GGG | - | chr1_2:74846192-74846211 | None:intergenic | 40.0% | |
| CTGGAACTGAAGCAAATACA+CGG | - | chr1_2:74846193-74846212 | None:intergenic | 40.0% | |
| ! | GGCTTGATGTCCAAATTTTC+TGG | - | chr1_2:74846278-74846297 | None:intergenic | 40.0% |
| !! | GATGTTTCGTTCTGAAATGG+TGG | - | chr1_2:74846299-74846318 | None:intergenic | 40.0% |
| TCAGAACGAAACATCATGGT+TGG | + | chr1_2:74846304-74846323 | Msa0092420:CDS | 40.0% | |
| AACTTTGGTCGCTAGTTAGT+TGG | - | chr1_2:74846577-74846596 | None:intergenic | 40.0% | |
| AGGAAGAAATTCATCAGCTC+CGG | - | chr1_2:74847273-74847292 | None:intergenic | 40.0% | |
| AGGGTAACATAGATTAGCAC+AGG | - | chr1_2:74847293-74847312 | None:intergenic | 40.0% | |
| TCCCTCCGTTCCTAATTATA+AGG | + | chr1_2:74847346-74847365 | Msa0092420:intron | 40.0% | |
| GCCTTATAATTAGGAACGGA+GGG | - | chr1_2:74847350-74847369 | None:intergenic | 40.0% | |
| GGGACAAAACTTTAGACCAT+TGG | - | chr1_2:74847393-74847412 | None:intergenic | 40.0% | |
| GGTAGGACTTACGAATATGT+AGG | + | chr1_2:74847647-74847666 | Msa0092420:intron | 40.0% | |
| ACAACAGGACAATGTTCAAC+GGG | + | chr1_2:74847796-74847815 | Msa0092420:intron | 40.0% | |
| AGTAGATTTGAGTGCAGTTG+TGG | - | chr1_2:74848289-74848308 | None:intergenic | 40.0% | |
| ! | TGATGCAAATGCCATTTCGA+TGG | + | chr1_2:74848405-74848424 | Msa0092420:CDS | 40.0% |
| CTCAGTTTCATCCATCGAAA+TGG | - | chr1_2:74848419-74848438 | None:intergenic | 40.0% | |
| AGTTCCATCACTCTCAGATT+TGG | + | chr1_2:74848615-74848634 | Msa0092420:CDS | 40.0% | |
| TTCTCCAAATCTGAGAGTGA+TGG | - | chr1_2:74848622-74848641 | None:intergenic | 40.0% | |
| TGTGTGTCTTTCCAAAGGAT+TGG | + | chr1_2:74848786-74848805 | Msa0092420:CDS | 40.0% | |
| GTGTGTCTTTCCAAAGGATT+GGG | + | chr1_2:74848787-74848806 | Msa0092420:CDS | 40.0% | |
| TCCTCAAATTAATGCTCAGC+AGG | + | chr1_2:74848840-74848859 | Msa0092420:CDS | 40.0% | |
| ! | TCCTGCTGAGCATTAATTTG+AGG | - | chr1_2:74848844-74848863 | None:intergenic | 40.0% |
| ATGTTGAAACCCTTTCCAGA+GGG | + | chr1_2:74848866-74848885 | Msa0092420:CDS | 40.0% | |
| !! | TGGTCCTGAGCATTATTTTG+AGG | - | chr1_2:74848928-74848947 | None:intergenic | 40.0% |
| TTGTGGTCTCACTCTTAACA+TGG | - | chr1_2:74848948-74848967 | None:intergenic | 40.0% | |
| AAAGTCTCCTGATACATCAG+AGG | + | chr1_2:74849014-74849033 | Msa0092420:CDS | 40.0% | |
| GAGTTATCCTCTGATGTATC+AGG | - | chr1_2:74849024-74849043 | None:intergenic | 40.0% | |
| AAAGGACAGTTACCACACAA+GGG | - | chr1_2:74849217-74849236 | None:intergenic | 40.0% | |
| AAAAGGACAGTTACCACACA+AGG | - | chr1_2:74849218-74849237 | None:intergenic | 40.0% | |
| !! | TGACATAGTGATAGTGGTCA+TGG | - | chr1_2:74849257-74849276 | None:intergenic | 40.0% |
| AGGAGATGACATAGTGATAG+TGG | - | chr1_2:74849263-74849282 | None:intergenic | 40.0% | |
| AAGGAAGTCGTGTAAACCAG+AGG | - | chr1_2:74845099-74845118 | None:intergenic | 45.0% | |
| GATTGCTTTGACGAAATCGG+CGG | - | chr1_2:74845144-74845163 | None:intergenic | 45.0% | |
| GATGGTGAATAGGAGAAGGA+AGG | - | chr1_2:74845175-74845194 | None:intergenic | 45.0% | |
| CTTTCAAGGCTCATCCTCTT+TGG | + | chr1_2:74845342-74845361 | Msa0092420:CDS | 45.0% | |
| ! | GATGATGAACTCGAAAGTGC+CGG | + | chr1_2:74845377-74845396 | Msa0092420:CDS | 45.0% |
| ! | TATAGGGAGCATGCCTTGTT+TGG | - | chr1_2:74845953-74845972 | None:intergenic | 45.0% |
| CAAACAGTGCTAGCACTTCA+AGG | - | chr1_2:74846024-74846043 | None:intergenic | 45.0% | |
| GGAACTGAAGCAAATACACG+GGG | - | chr1_2:74846191-74846210 | None:intergenic | 45.0% | |
| GTCGCTAGTTAGTTGGCATT+GGG | - | chr1_2:74846570-74846589 | None:intergenic | 45.0% | |
| TGTGTAACACGGAGAAAGCA+TGG | - | chr1_2:74846729-74846748 | None:intergenic | 45.0% | |
| GCTTCCAAAGATAATCCTCC+CGG | + | chr1_2:74847251-74847270 | Msa0092420:CDS | 45.0% | |
| GGAAGAAATTCATCAGCTCC+GGG | - | chr1_2:74847272-74847291 | None:intergenic | 45.0% | |
| ! | GGCCTTATAATTAGGAACGG+AGG | - | chr1_2:74847351-74847370 | None:intergenic | 45.0% |
| AGGATGTCCTATAAAGAGGG+TGG | + | chr1_2:74847527-74847546 | Msa0092420:intron | 45.0% | |
| GGATGTCCTATAAAGAGGGT+GGG | + | chr1_2:74847528-74847547 | Msa0092420:intron | 45.0% | |
| AGTCTCACAGTCACATACGT+AGG | - | chr1_2:74848056-74848075 | None:intergenic | 45.0% | |
| GATTTGAGTGCAGTTGTGGA+GGG | - | chr1_2:74848285-74848304 | None:intergenic | 45.0% | |
| AGATTTGAGTGCAGTTGTGG+AGG | - | chr1_2:74848286-74848305 | None:intergenic | 45.0% | |
| GTTTAGACGCCAATCTCGTT+TGG | + | chr1_2:74848321-74848340 | Msa0092420:CDS | 45.0% | |
| TTTGCTCGTGCTCTTCTTTC+AGG | + | chr1_2:74848457-74848476 | Msa0092420:CDS | 45.0% | |
| TTGCTCGTGCTCTTCTTTCA+GGG | + | chr1_2:74848458-74848477 | Msa0092420:CDS | 45.0% | |
| AGAAGAGACACCCAATCCTT+TGG | - | chr1_2:74848800-74848819 | None:intergenic | 45.0% | |
| ! | CTCTGGAAAGGGTTTCAACA+TGG | - | chr1_2:74848867-74848886 | None:intergenic | 45.0% |
| CATGTTGAAACCCTTTCCAG+AGG | + | chr1_2:74848865-74848884 | Msa0092420:CDS | 45.0% | |
| AACATGAGATGAAGAGGAGG+AGG | - | chr1_2:74848896-74848915 | None:intergenic | 45.0% | |
| TGGAACATGAGATGAAGAGG+AGG | - | chr1_2:74848899-74848918 | None:intergenic | 45.0% | |
| GGATGGAACATGAGATGAAG+AGG | - | chr1_2:74848902-74848921 | None:intergenic | 45.0% | |
| ! | AAGTGATTCAGGTTTGGCAC+AGG | + | chr1_2:74849059-74849078 | Msa0092420:CDS | 45.0% |
| AAGGACAGTTACCACACAAG+GGG | - | chr1_2:74849216-74849235 | None:intergenic | 45.0% | |
| !! | AAATTTAAATTATAAGAATA+GGG | - | chr1_2:74846686-74846705 | None:intergenic | 5.0% |
| !! | TAAATTTAAATTATAAGAAT+AGG | - | chr1_2:74846687-74846706 | None:intergenic | 5.0% |
| ! | GTGTAAACCAGAGGAAGCGT+CGG | - | chr1_2:74845090-74845109 | None:intergenic | 50.0% |
| TCACTGTCTCTCTCAGGATC+GGG | - | chr1_2:74845287-74845306 | None:intergenic | 50.0% | |
| GTCACTGTCTCTCTCAGGAT+CGG | - | chr1_2:74845288-74845307 | None:intergenic | 50.0% | |
| GGTCGCTAGTTAGTTGGCAT+TGG | - | chr1_2:74846571-74846590 | None:intergenic | 50.0% | |
| TGTGGCTAATGAGAACCCAG+TGG | - | chr1_2:74846936-74846955 | None:intergenic | 50.0% | |
| CTAGCACTTCGTCCCACAAT+TGG | - | chr1_2:74846983-74847002 | None:intergenic | 50.0% | |
| AGCTCCGGGAGGATTATCTT+TGG | - | chr1_2:74847258-74847277 | None:intergenic | 50.0% | |
| AGAAATTCATCAGCTCCGGG+AGG | - | chr1_2:74847269-74847288 | None:intergenic | 50.0% | |
| TGTCCTATAAAGAGGGTGGG+AGG | + | chr1_2:74847531-74847550 | Msa0092420:intron | 50.0% | |
| GTCCTATAAAGAGGGTGGGA+GGG | + | chr1_2:74847532-74847551 | Msa0092420:intron | 50.0% | |
| AGACGCCAATCTCGTTTGGT+TGG | + | chr1_2:74848325-74848344 | Msa0092420:CDS | 50.0% | |
| GACGCCAATCTCGTTTGGTT+GGG | + | chr1_2:74848326-74848345 | Msa0092420:CDS | 50.0% | |
| ACGCCAATCTCGTTTGGTTG+GGG | + | chr1_2:74848327-74848346 | Msa0092420:CDS | 50.0% | |
| CTTCCCCAACCAAACGAGAT+TGG | - | chr1_2:74848333-74848352 | None:intergenic | 50.0% | |
| ! | TTCAGGTTTGGCACAGGATG+AGG | + | chr1_2:74849065-74849084 | Msa0092420:CDS | 50.0% |
| TTTGACGAAATCGGCGGCAG+CGG | - | chr1_2:74845138-74845157 | None:intergenic | 55.0% | |
| AAGGCTCATCCTCTTTGGGC+TGG | + | chr1_2:74845347-74845366 | Msa0092420:CDS | 55.0% | |
| TCAGAGCAACCAGCCCAAAG+AGG | - | chr1_2:74845359-74845378 | None:intergenic | 55.0% | |
| CTCCCTCCCACCCTCTTTAT+AGG | - | chr1_2:74847537-74847556 | None:intergenic | 55.0% | |
| ! | GGAGGCTAACCCTCTGGAAA+GGG | - | chr1_2:74848878-74848897 | None:intergenic | 55.0% |
| ! | AGGAGGCTAACCCTCTGGAA+AGG | - | chr1_2:74848879-74848898 | None:intergenic | 55.0% |
| GATCGCTCGCGTCACTGTGT+CGG | + | chr1_2:74845008-74845027 | Msa0092420:five_prime_UTR | 60.0% | |
| GAAAACGCCGACGCTTCCTC+TGG | + | chr1_2:74845080-74845099 | Msa0092420:CDS | 60.0% | |
| TTGACGAAATCGGCGGCAGC+GGG | - | chr1_2:74845137-74845156 | None:intergenic | 60.0% | |
| ACGGCGTCACTGTCTCTCTC+AGG | - | chr1_2:74845293-74845312 | None:intergenic | 60.0% | |
| AGAGGAGGAGGCTAACCCTC+TGG | - | chr1_2:74848884-74848903 | None:intergenic | 60.0% | |
| GATGAGGCAGCTGCACCAGA+GGG | + | chr1_2:74849081-74849100 | Msa0092420:CDS | 60.0% | |
| ! | CGGGTTGACGCATGCGCTCA+AGG | - | chr1_2:74845118-74845137 | None:intergenic | 65.0% |
| GGATGAGGCAGCTGCACCAG+AGG | + | chr1_2:74849080-74849099 | Msa0092420:CDS | 65.0% | |
| !! | TATGAGGGGGCACCACCCTC+TGG | - | chr1_2:74849099-74849118 | None:intergenic | 65.0% |
| GAGGCAGCTGCACCAGAGGG+TGG | + | chr1_2:74849084-74849103 | Msa0092420:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 74844982 | 74849343 | 74844982 | ID=Msa0092420;Name=Msa0092420 |
| chr1_2 | mRNA | 74844982 | 74849343 | 74844982 | ID=Msa0092420-mRNA-1;Parent=Msa0092420;Name=Msa0092420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|5|224|477 |
| chr1_2 | exon | 74844982 | 74845168 | 74844982 | ID=Msa0092420-mRNA-1:exon:26349;Parent=Msa0092420-mRNA-1 |
| chr1_2 | exon | 74845256 | 74845403 | 74845256 | ID=Msa0092420-mRNA-1:exon:26350;Parent=Msa0092420-mRNA-1 |
| chr1_2 | exon | 74846155 | 74846325 | 74846155 | ID=Msa0092420-mRNA-1:exon:26351;Parent=Msa0092420-mRNA-1 |
| chr1_2 | exon | 74847137 | 74847316 | 74847137 | ID=Msa0092420-mRNA-1:exon:26352;Parent=Msa0092420-mRNA-1 |
| chr1_2 | exon | 74848277 | 74849343 | 74848277 | ID=Msa0092420-mRNA-1:exon:26353;Parent=Msa0092420-mRNA-1 |
| chr1_2 | five_prime_UTR | 74844982 | 74845076 | 74844982 | ID=Msa0092420-mRNA-1:five_prime_utr;Parent=Msa0092420-mRNA-1 |
| chr1_2 | CDS | 74845077 | 74845168 | 74845077 | ID=Msa0092420-mRNA-1:cds;Parent=Msa0092420-mRNA-1 |
| chr1_2 | CDS | 74845256 | 74845403 | 74845256 | ID=Msa0092420-mRNA-1:cds;Parent=Msa0092420-mRNA-1 |
| chr1_2 | CDS | 74846155 | 74846325 | 74846155 | ID=Msa0092420-mRNA-1:cds;Parent=Msa0092420-mRNA-1 |
| chr1_2 | CDS | 74847137 | 74847316 | 74847137 | ID=Msa0092420-mRNA-1:cds;Parent=Msa0092420-mRNA-1 |
| chr1_2 | CDS | 74848277 | 74849119 | 74848277 | ID=Msa0092420-mRNA-1:cds;Parent=Msa0092420-mRNA-1 |
| chr1_2 | three_prime_UTR | 74849120 | 74849343 | 74849120 | ID=Msa0092420-mRNA-1:three_prime_utr;Parent=Msa0092420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
