Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269550 | XP_003601131.1 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269550 | sp|Q9LT31|VPS9A_ARATH | 64.541 | 392 | 121 | 3 | 1 | 375 | 1 | 391 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269550 | G7J457 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092420 | Msa0269550 | 0.842915 | 1.930947e-58 | -8.615850e-47 |
| Msa0269550 | Msa1363690 | 0.809952 | 1.467350e-50 | -8.615850e-47 |
| Msa0269550 | Msa1396550 | 0.809812 | 1.572595e-50 | -8.615850e-47 |
| Msa0269550 | Msa1430540 | 0.988826 | 1.443186e-175 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269550 | MtrunA17_Chr3g0115241 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Msa0269550 | MtrunA17_Chr3g0079541 | 44.271 | 384 | 166 | 5 | 10 | 380 | 13 | 361 | 3.46e-110 | 332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0269550 | AT3G19770.1 | 64.541 | 392 | 121 | 3 | 1 | 375 | 1 | 391 | 0.0 | 521 |
| Msa0269550 | AT5G09320.1 | 63.472 | 386 | 121 | 5 | 1 | 375 | 1 | 377 | 5.53e-174 | 496 |
| Msa0269550 | AT3G19770.2 | 60.547 | 256 | 83 | 3 | 137 | 375 | 1 | 255 | 1.09e-100 | 307 |
Find 111 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTCGTGCTCTTCTTTC+AGG | 0.092648 | 2_3:-475825 | Msa0269550:CDS |
| CTTTCAAGGCTCATCCTCTT+TGG | 0.147130 | 2_3:-478940 | Msa0269550:CDS |
| CTAAACTGTTGCAAGGTTAT+TGG | 0.183133 | 2_3:-477079 | Msa0269550:CDS |
| CTATTGTAGCTAGTTCTTAT+AGG | 0.213537 | 2_3:+475162 | None:intergenic |
| ACAAGACTTTCTTGCTAATA+TGG | 0.214200 | 2_3:-478969 | Msa0269550:CDS |
| GTTTATTCGACCAGAAAATT+TGG | 0.230820 | 2_3:-478017 | Msa0269550:CDS |
| GAATGGAGTTTGTACCTTTA+GGG | 0.246408 | 2_3:+476973 | None:intergenic |
| TTTCAAGGCTCATCCTCTTT+GGG | 0.304407 | 2_3:-478939 | Msa0269550:CDS |
| AGTTCCATCACTCTCAGATT+TGG | 0.309468 | 2_3:-475667 | Msa0269550:CDS |
| CTCTCAGATTTGGAGAATAA+AGG | 0.325043 | 2_3:-475657 | Msa0269550:CDS |
| CCTACACTAGCAAACATATA+TGG | 0.326586 | 2_3:+475582 | None:intergenic |
| TGCATCAATGTTTGAGATGA+AGG | 0.345631 | 2_3:+475893 | None:intergenic |
| AGGGGCAAGTATGATAATTA+AGG | 0.358711 | 2_3:-475637 | Msa0269550:CDS |
| GCTAGTTCTTATAGGTTATG+AGG | 0.365525 | 2_3:+475170 | None:intergenic |
| GACGCCAATCTCGTTTGGTT+GGG | 0.368934 | 2_3:-475956 | Msa0269550:CDS |
| AGCTCCGGGAGGATTATCTT+TGG | 0.379653 | 2_3:+477027 | None:intergenic |
| TCTCAGATTTGGAGAATAAA+GGG | 0.386680 | 2_3:-475656 | Msa0269550:CDS |
| TTGCTCGTGCTCTTCTTTCA+GGG | 0.402976 | 2_3:-475824 | Msa0269550:CDS |
| TAATATGGAAGCTGCTTTCA+AGG | 0.406354 | 2_3:-478954 | Msa0269550:CDS |
| TTTGATTGCTTTGACGAAAT+CGG | 0.409299 | 2_3:+479138 | None:intergenic |
| AGAAGAGACACCCAATCCTT+TGG | 0.414430 | 2_3:+475485 | None:intergenic |
| ATCGTTTGTAATTCTTTAGC+AGG | 0.422513 | 2_3:+475532 | None:intergenic |
| GAGTTATCCTCTGATGTATC+AGG | 0.425915 | 2_3:+475261 | None:intergenic |
| GTTTAGACGCCAATCTCGTT+TGG | 0.428125 | 2_3:-475961 | Msa0269550:CDS |
| CTGAGCATTAATTTGAGGAT+TGG | 0.430065 | 2_3:+475446 | None:intergenic |
| AAGGCTCATCCTCTTTGGGC+TGG | 0.435705 | 2_3:-478935 | Msa0269550:CDS |
| TTTGGAAAGACACACATACT+TGG | 0.443460 | 2_3:+475503 | None:intergenic |
| TCCTGCTGAGCATTAATTTG+AGG | 0.443479 | 2_3:+475441 | None:intergenic |
| GTGTGTCTTTCCAAAGGATT+GGG | 0.451990 | 2_3:-475495 | Msa0269550:CDS |
| CTCAGTTTCATCCATCGAAA+TGG | 0.455170 | 2_3:+475866 | None:intergenic |
| AGGAAGAAATTCATCAGCTC+CGG | 0.457159 | 2_3:+477012 | None:intergenic |
| GTCACTGTCTCTCTCAGGAT+CGG | 0.459367 | 2_3:+478997 | None:intergenic |
| CTTCCCCAACCAAACGAGAT+TGG | 0.465068 | 2_3:+475952 | None:intergenic |
| ATACAAGTAAGTTTGTCTCT+TGG | 0.467430 | 2_3:+477103 | None:intergenic |
| AGACGCCAATCTCGTTTGGT+TGG | 0.468552 | 2_3:-475957 | Msa0269550:CDS |
| TTTGACGAAATCGGCGGCAG+CGG | 0.469527 | 2_3:+479147 | None:intergenic |
| CATGATGTTTCGTTCTGAAA+TGG | 0.469832 | 2_3:+477983 | None:intergenic |
| TGAACAACTTTCAGAGAAGA+TGG | 0.470154 | 2_3:-478053 | Msa0269550:CDS |
| TCCTCAAATTAATGCTCAGC+AGG | 0.475789 | 2_3:-475442 | Msa0269550:CDS |
| AATGTTTGAGATGAAGGATT+CGG | 0.475951 | 2_3:+475899 | None:intergenic |
| TTCAGGTTTGGCACAGGATG+AGG | 0.476857 | 2_3:-475217 | Msa0269550:CDS |
| GAAAACGCCGACGCTTCCTC+TGG | 0.479356 | 2_3:-479202 | Msa0269550:CDS |
| CGGGTTGACGCATGCGCTCA+AGG | 0.480136 | 2_3:+479167 | None:intergenic |
| GATTTGAGTGCAGTTGTGGA+GGG | 0.482098 | 2_3:+476000 | None:intergenic |
| TTGACGAAATCGGCGGCAGC+GGG | 0.482889 | 2_3:+479148 | None:intergenic |
| TCACTGTCTCTCTCAGGATC+GGG | 0.494208 | 2_3:+478998 | None:intergenic |
| CTAGTTCTTATAGGTTATGA+GGG | 0.503046 | 2_3:+475171 | None:intergenic |
| ATTTCGTCAAAGCAATCAAA+AGG | 0.504467 | 2_3:-479135 | Msa0269550:intron |
| TGTGTGTCTTTCCAAAGGAT+TGG | 0.507736 | 2_3:-475496 | Msa0269550:CDS |
| CAATCCTCAAAATAATGCTC+AGG | 0.511468 | 2_3:-475361 | Msa0269550:CDS |
| ACGCCAATCTCGTTTGGTTG+GGG | 0.518389 | 2_3:-475955 | Msa0269550:CDS |
| AGTAGATTTGAGTGCAGTTG+TGG | 0.522864 | 2_3:+475996 | None:intergenic |
| GATCGCTCGCGTCACTGTGT+CGG | 0.531113 | 2_3:-479274 | Msa0269550:five_prime_UTR |
| ACGGCGTCACTGTCTCTCTC+AGG | 0.531238 | 2_3:+478992 | None:intergenic |
| GCTAATCTATGTTACCCTAA+AGG | 0.536558 | 2_3:-476987 | Msa0269550:intron |
| AAGTGATTCAGGTTTGGCAC+AGG | 0.537557 | 2_3:-475223 | Msa0269550:CDS |
| TTCTCCAAATCTGAGAGTGA+TGG | 0.537645 | 2_3:+475663 | None:intergenic |
| ACACTGTCTGTGTAAACTGT+TGG | 0.540292 | 2_3:+479229 | None:intergenic |
| TCAGAACGAAACATCATGGT+TGG | 0.544171 | 2_3:-477978 | Msa0269550:intron |
| GCTTCCAAAGATAATCCTCC+CGG | 0.544270 | 2_3:-477031 | Msa0269550:CDS |
| GCATTAATTTGAGGATTGGA+TGG | 0.545127 | 2_3:+475450 | None:intergenic |
| AAGTATGTGTGTCTTTCCAA+AGG | 0.547865 | 2_3:-475501 | Msa0269550:CDS |
| GGAGGCTAACCCTCTGGAAA+GGG | 0.548700 | 2_3:+475407 | None:intergenic |
| AGGAGATGACATAGTGATAG+TGG | 0.549356 | 2_3:+475022 | None:intergenic |
| CCATATATGTTTGCTAGTGT+AGG | 0.550230 | 2_3:-475582 | Msa0269550:CDS |
| AGGGTAACATAGATTAGCAC+AGG | 0.551339 | 2_3:+476992 | None:intergenic |
| AGGAGGCTAACCCTCTGGAA+AGG | 0.552204 | 2_3:+475406 | None:intergenic |
| CATTTCAGAACGAAACATCA+TGG | 0.552754 | 2_3:-477982 | Msa0269550:CDS |
| AGATTTGAGTGCAGTTGTGG+AGG | 0.554178 | 2_3:+475999 | None:intergenic |
| AGAGGAGGAGGCTAACCCTC+TGG | 0.554787 | 2_3:+475401 | None:intergenic |
| AGTTTACACAGACAGTGTAA+TGG | 0.561442 | 2_3:-479224 | Msa0269550:exon |
| GGATGGAACATGAGATGAAG+AGG | 0.561692 | 2_3:+475383 | None:intergenic |
| TGGAACATGAGATGAAGAGG+AGG | 0.562317 | 2_3:+475386 | None:intergenic |
| GGAAGAAATTCATCAGCTCC+GGG | 0.564520 | 2_3:+477013 | None:intergenic |
| TGACATAGTGATAGTGGTCA+TGG | 0.567790 | 2_3:+475028 | None:intergenic |
| ACGGAAGAAACTAACTTCAC+CGG | 0.568114 | 2_3:+478886 | None:intergenic |
| TTGTATTCTAAACTGTTGCA+AGG | 0.570078 | 2_3:-477086 | Msa0269550:CDS |
| AACATGAGATGAAGAGGAGG+AGG | 0.575942 | 2_3:+475389 | None:intergenic |
| GAGGCAGCTGCACCAGAGGG+TGG | 0.577158 | 2_3:-475198 | Msa0269550:CDS |
| GGCAAGTATGATAATTAAGG+AGG | 0.579130 | 2_3:-475634 | Msa0269550:CDS |
| TTGTGGTCTCACTCTTAACA+TGG | 0.581797 | 2_3:+475337 | None:intergenic |
| TGATGCAAATGCCATTTCGA+TGG | 0.585306 | 2_3:-475877 | Msa0269550:CDS |
| GATGATGAACTCGAAAGTGC+CGG | 0.587723 | 2_3:-478905 | Msa0269550:CDS |
| CTCTGGAAAGGGTTTCAACA+TGG | 0.588017 | 2_3:+475418 | None:intergenic |
| GGATGAGGCAGCTGCACCAG+AGG | 0.592274 | 2_3:-475202 | Msa0269550:CDS |
| CAAATCTACTGTACATACAA+AGG | 0.593182 | 2_3:-475983 | Msa0269550:CDS |
| GATGTTTCGTTCTGAAATGG+TGG | 0.597900 | 2_3:+477986 | None:intergenic |
| ACAATAGATTCTTCAGACAA+TGG | 0.598478 | 2_3:-475318 | Msa0269550:CDS |
| TGGAACTGAAGCAAATACAC+GGG | 0.606683 | 2_3:+478093 | None:intergenic |
| ATTAGCAAGAAAGTCTTGTA+CGG | 0.609996 | 2_3:+478973 | None:intergenic |
| CTGGAACTGAAGCAAATACA+CGG | 0.612874 | 2_3:+478092 | None:intergenic |
| GATGAGGCAGCTGCACCAGA+GGG | 0.615534 | 2_3:-475201 | Msa0269550:CDS |
| AAAAGGACAGTTACCACACA+AGG | 0.616602 | 2_3:+475067 | None:intergenic |
| CATGTTGAAACCCTTTCCAG+AGG | 0.617877 | 2_3:-475417 | Msa0269550:CDS |
| ATGTTGAAACCCTTTCCAGA+GGG | 0.618383 | 2_3:-475416 | Msa0269550:CDS |
| ACAGAAGATCAACATGTACA+AGG | 0.620589 | 2_3:-477128 | Msa0269550:CDS |
| AACTGAGTTTGAGAGAAACA+TGG | 0.628613 | 2_3:-475850 | Msa0269550:CDS |
| TCAGAGCAACCAGCCCAAAG+AGG | 0.635777 | 2_3:+478926 | None:intergenic |
| TAGTTCTTATAGGTTATGAG+GGG | 0.640645 | 2_3:+475172 | None:intergenic |
| ATTGTCTGAAGAATCTATTG+TGG | 0.654771 | 2_3:+475320 | None:intergenic |
| AAAGTCTCCTGATACATCAG+AGG | 0.656909 | 2_3:-475268 | Msa0269550:CDS |
| CTCAGATTTGGAGAATAAAG+GGG | 0.658898 | 2_3:-475655 | Msa0269550:CDS |
| GTTTAAGAATAATGTTACAG+AGG | 0.659041 | 2_3:+475002 | None:intergenic |
| AAGGACAGTTACCACACAAG+GGG | 0.659236 | 2_3:+475069 | None:intergenic |
| AAAGGACAGTTACCACACAA+GGG | 0.671725 | 2_3:+475068 | None:intergenic |
| GTGTAAACCAGAGGAAGCGT+CGG | 0.675079 | 2_3:+479195 | None:intergenic |
| AAGGAAGTCGTGTAAACCAG+AGG | 0.678101 | 2_3:+479186 | None:intergenic |
| AGTTCTTATAGGTTATGAGG+GGG | 0.679075 | 2_3:+475173 | None:intergenic |
| GATTGCTTTGACGAAATCGG+CGG | 0.701074 | 2_3:+479141 | None:intergenic |
| AGAAATTCATCAGCTCCGGG+AGG | 0.733938 | 2_3:+477016 | None:intergenic |
| GGAACTGAAGCAAATACACG+GGG | 0.751718 | 2_3:+478094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATGAAAATAAGAATA+CGG | + | chr2_3:475397-475416 | None:intergenic | 10.0% |
| !! | AAATTAAATATCTTCAATTA+TGG | + | chr2_3:475438-475457 | None:intergenic | 10.0% |
| !!! | ATATTTTATCATTAGAAAAA+AGG | - | chr2_3:476382-476401 | Msa0269550:intron | 10.0% |
| !!! | AAATAACTAGTTTGTTAATT+AGG | - | chr2_3:475619-475638 | Msa0269550:CDS | 15.0% |
| !! | TATGTATTTCTTAATAACTT+TGG | + | chr2_3:476571-476590 | None:intergenic | 15.0% |
| !! | TTATTTACAAACTAATATTG+TGG | + | chr2_3:476933-476952 | None:intergenic | 15.0% |
| !!! | GTCAAAATTGTAATTTTTAT+TGG | + | chr2_3:477025-477044 | None:intergenic | 15.0% |
| !! | AGAGAGAATATAAAATTTAA+GGG | + | chr2_3:477079-477098 | None:intergenic | 15.0% |
| !! | ATTATTTATTAGAAAAGTGA+AGG | + | chr2_3:477605-477624 | None:intergenic | 15.0% |
| !!! | TTCACTTTTCTAATAAATAA+TGG | - | chr2_3:477604-477623 | Msa0269550:intron | 15.0% |
| !!! | TCACTTTTCTAATAAATAAT+GGG | - | chr2_3:477605-477624 | Msa0269550:intron | 15.0% |
| !! | TAAAATATATGCATATTTGT+GGG | + | chr2_3:477858-477877 | None:intergenic | 15.0% |
| !! | ATAAAATATATGCATATTTG+TGG | + | chr2_3:477859-477878 | None:intergenic | 15.0% |
| !! | AGTAAAAGAAAAAAAAAAGA+GGG | + | chr2_3:479144-479163 | None:intergenic | 15.0% |
| !! | GGTATATTATGATTGAAAAT+GGG | + | chr2_3:476045-476064 | None:intergenic | 20.0% |
| !! | TGGTATATTATGATTGAAAA+TGG | + | chr2_3:476046-476065 | None:intergenic | 20.0% |
| !! | GATAAAATATTGTTATCGTT+GGG | + | chr2_3:476372-476391 | None:intergenic | 20.0% |
| !! | TGATAAAATATTGTTATCGT+TGG | + | chr2_3:476373-476392 | None:intergenic | 20.0% |
| !!! | TTTAAAACTGAACTAAAAGA+CGG | + | chr2_3:476499-476518 | None:intergenic | 20.0% |
| !!! | AATTGAATCAATTGATTCTT+AGG | + | chr2_3:476878-476897 | None:intergenic | 20.0% |
| !!! | TTACAATTTTGACTTGTTAA+TGG | - | chr2_3:477032-477051 | Msa0269550:CDS | 20.0% |
| !! | GAGAGAGAATATAAAATTTA+AGG | + | chr2_3:477080-477099 | None:intergenic | 20.0% |
| !! | GGAATATATATAATGAAGAA+TGG | + | chr2_3:477308-477327 | None:intergenic | 20.0% |
| !!! | GGAATAAAATGTTTTGTAAA+AGG | + | chr2_3:477351-477370 | None:intergenic | 20.0% |
| !!! | TACAAAACATTTTATTCCAA+TGG | - | chr2_3:477353-477372 | Msa0269550:intron | 20.0% |
| !! | GTATTAATAAGGGAAATATT+TGG | + | chr2_3:477442-477461 | None:intergenic | 20.0% |
| !! | CCTATAAAGTGTATTAATAA+GGG | + | chr2_3:477452-477471 | None:intergenic | 20.0% |
| !! | TCCTATAAAGTGTATTAATA+AGG | + | chr2_3:477453-477472 | None:intergenic | 20.0% |
| !!! | GGAAGTAATAAAAACATTTT+TGG | + | chr2_3:477584-477603 | None:intergenic | 20.0% |
| !!! | TTTTCTAATAAATAATGGGT+AGG | - | chr2_3:477609-477628 | Msa0269550:intron | 20.0% |
| !!! | TTGATAGCAAAATATTTCAA+AGG | + | chr2_3:477957-477976 | None:intergenic | 20.0% |
| !!! | ATATTCCTAAACTCTATTTT+AGG | - | chr2_3:478162-478181 | Msa0269550:intron | 20.0% |
| !!! | TTTTAAGAAAAGTCTTCTAT+TGG | - | chr2_3:478220-478239 | Msa0269550:intron | 20.0% |
| !! | GTAAAAGAAAAAAAAAAGAG+GGG | + | chr2_3:479143-479162 | None:intergenic | 20.0% |
| !! | GAGTAAAAGAAAAAAAAAAG+AGG | + | chr2_3:479145-479164 | None:intergenic | 20.0% |
| !!! | TACAAGAGAAATTTTGAATT+TGG | - | chr2_3:479297-479316 | Msa0269550:five_prime_UTR | 20.0% |
| ! | TTGAAATTAAGATGGTGAAT+AGG | + | chr2_3:475164-475183 | None:intergenic | 25.0% |
| ! | ATGTATCAGTGAATTGATTA+GGG | + | chr2_3:475193-475212 | None:intergenic | 25.0% |
| ! | AATGTATCAGTGAATTGATT+AGG | + | chr2_3:475194-475213 | None:intergenic | 25.0% |
| !! | ATAGTTTCGTTTTCAAATCA+TGG | - | chr2_3:475239-475258 | Msa0269550:CDS | 25.0% |
| !! | TTAATTGTTTAAAACACGAG+TGG | - | chr2_3:475563-475582 | Msa0269550:CDS | 25.0% |
| ! | TTAAGCTATTTATCCAAACA+AGG | + | chr2_3:475645-475664 | None:intergenic | 25.0% |
| !! | GCAGTATATAAGTTCTAATA+AGG | - | chr2_3:475809-475828 | Msa0269550:CDS | 25.0% |
| !! | CCTTATTTGATCTTATTTAC+TGG | + | chr2_3:475848-475867 | None:intergenic | 25.0% |
| ! | CCAGTAAATAAGATCAAATA+AGG | - | chr2_3:475845-475864 | Msa0269550:CDS | 25.0% |
| ! | CTAACTAACCTATTAACTAA+GGG | + | chr2_3:475887-475906 | None:intergenic | 25.0% |
| ! | TCTAACTAACCTATTAACTA+AGG | + | chr2_3:475888-475907 | None:intergenic | 25.0% |
| ! | ATAACTCATCCCTATTTATA+GGG | + | chr2_3:475948-475967 | None:intergenic | 25.0% |
| ! | AATAACTCATCCCTATTTAT+AGG | + | chr2_3:475949-475968 | None:intergenic | 25.0% |
| ! | TTCAATCATAATATACCAGT+TGG | - | chr2_3:476048-476067 | Msa0269550:intron | 25.0% |
| ! | AGCAATCAATCAGAAAATAT+AGG | + | chr2_3:476086-476105 | None:intergenic | 25.0% |
| ! | TCATTGAACATAATTACACA+TGG | + | chr2_3:476412-476431 | None:intergenic | 25.0% |
| ! | AATTATGTTCAATGAATGCT+AGG | - | chr2_3:476417-476436 | Msa0269550:intron | 25.0% |
| ! | TTAAAACTGAACTAAAAGAC+GGG | + | chr2_3:476498-476517 | None:intergenic | 25.0% |
| !! | AAATGCAACTGTATACTTTT+TGG | - | chr2_3:476518-476537 | Msa0269550:intron | 25.0% |
| ! | GAAAATATGTTAGTTGAGTA+GGG | + | chr2_3:476615-476634 | None:intergenic | 25.0% |
| ! | AGAAAATATGTTAGTTGAGT+AGG | + | chr2_3:476616-476635 | None:intergenic | 25.0% |
| !! | TAACATATTTTCTCTGACAT+GGG | - | chr2_3:476623-476642 | Msa0269550:intron | 25.0% |
| ! | ATTTAAATTGAGTGGTTCTT+GGG | - | chr2_3:476771-476790 | Msa0269550:intron | 25.0% |
| !!! | TTGGGTATTTCAATGTTTTT+TGG | - | chr2_3:476789-476808 | Msa0269550:intron | 25.0% |
| !!! | TATTCAGTTTGTTCTAAAGT+TGG | - | chr2_3:476821-476840 | Msa0269550:intron | 25.0% |
| ! | TAAATAATGATTGCCAATTG+TGG | - | chr2_3:476946-476965 | Msa0269550:intron | 25.0% |
| ! | AAATAATGATTGCCAATTGT+GGG | - | chr2_3:476947-476966 | Msa0269550:intron | 25.0% |
| ! | ATATAAAATTTAAGGGATGC+AGG | + | chr2_3:477072-477091 | None:intergenic | 25.0% |
| ! | TATATTCTCTCTCATTCTTA+TGG | - | chr2_3:477087-477106 | Msa0269550:CDS | 25.0% |
| !! | TTGTAAAAGGCCTTATAATT+AGG | + | chr2_3:477338-477357 | None:intergenic | 25.0% |
| ! | CCCTTATTAATACACTTTAT+AGG | - | chr2_3:477449-477468 | Msa0269550:intron | 25.0% |
| !! | ATCATGGGTCTTATATATAT+GGG | + | chr2_3:477479-477498 | None:intergenic | 25.0% |
| !! | AATCATGGGTCTTATATATA+TGG | + | chr2_3:477480-477499 | None:intergenic | 25.0% |
| ! | CTTGTCGTATAGAATTAATT+TGG | - | chr2_3:477555-477574 | Msa0269550:intron | 25.0% |
| ! | GCAAAATATTTCAAAGGAAA+AGG | + | chr2_3:477951-477970 | None:intergenic | 25.0% |
| ! | ATGTGATGAAACTAGATAAA+TGG | - | chr2_3:478006-478025 | Msa0269550:CDS | 25.0% |
| ! | TTTAGTGCATCATTGAATTT+AGG | - | chr2_3:478077-478096 | Msa0269550:CDS | 25.0% |
| ! | TAACTTTATCCACATGAAAA+TGG | + | chr2_3:478190-478209 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGGTGAATT+GGG | + | chr2_3:478484-478503 | None:intergenic | 25.0% |
| !!! | ATGATTTTGATAAGGTGAAT+TGG | + | chr2_3:478485-478504 | None:intergenic | 25.0% |
| !!! | ATAAGTTGAATGATGTTTTC+AGG | - | chr2_3:478650-478669 | Msa0269550:intron | 25.0% |
| !!! | TAAGTTGAATGATGTTTTCA+GGG | - | chr2_3:478651-478670 | Msa0269550:intron | 25.0% |
| !! | AGACTTTTCTGATTTTTCAT+TGG | + | chr2_3:478980-478999 | None:intergenic | 25.0% |
| !!! | GCATTGTCATTTTTATCAAA+AGG | + | chr2_3:479214-479233 | None:intergenic | 25.0% |
| ! | GTTTAAGAATAATGTTACAG+AGG | + | chr2_3:479262-479281 | None:intergenic | 25.0% |
| AAAAATAACAAGTGACGTGT+TGG | - | chr2_3:474965-474984 | Msa0269550:three_prime_UTR | 30.0% | |
| TTTGATTGCTTTGACGAAAT+CGG | + | chr2_3:475126-475145 | None:intergenic | 30.0% | |
| ATTTCGTCAAAGCAATCAAA+AGG | - | chr2_3:475126-475145 | Msa0269550:three_prime_UTR | 30.0% | |
| ! | ATTAGCAAGAAAGTCTTGTA+CGG | + | chr2_3:475291-475310 | None:intergenic | 30.0% |
| ACAAGACTTTCTTGCTAATA+TGG | - | chr2_3:475292-475311 | Msa0269550:CDS | 30.0% | |
| !! | TTTGTTAATTAGGCCTTGTT+TGG | - | chr2_3:475629-475648 | Msa0269550:CDS | 30.0% |
| ! | ATCTTATTTACTGGTCTGTT+TGG | + | chr2_3:475839-475858 | None:intergenic | 30.0% |
| TAGCACTGTTTGTAATCAAA+GGG | - | chr2_3:476011-476030 | Msa0269550:intron | 30.0% | |
| ! | TCATCATGTTTTACATCATC+TGG | + | chr2_3:476191-476210 | None:intergenic | 30.0% |
| GTTTATTCGACCAGAAAATT+TGG | - | chr2_3:476244-476263 | Msa0269550:intron | 30.0% | |
| TTGATATTGCTACATTGGAT+TGG | + | chr2_3:476451-476470 | None:intergenic | 30.0% | |
| TGAGTTTGATATTGCTACAT+TGG | + | chr2_3:476456-476475 | None:intergenic | 30.0% | |
| ! | CTAACATATTTTCTCTGACA+TGG | - | chr2_3:476622-476641 | Msa0269550:intron | 30.0% |
| AAATGTTGACAGAAAACGAA+TGG | + | chr2_3:476740-476759 | None:intergenic | 30.0% | |
| CCACTCAATTTAAATGCATT+TGG | + | chr2_3:476766-476785 | None:intergenic | 30.0% | |
| CCAAATGCATTTAAATTGAG+TGG | - | chr2_3:476763-476782 | Msa0269550:intron | 30.0% | |
| CATTTAAATTGAGTGGTTCT+TGG | - | chr2_3:476770-476789 | Msa0269550:intron | 30.0% | |
| !! | AGTTTGTTCTAAAGTTGGAT+AGG | - | chr2_3:476826-476845 | Msa0269550:intron | 30.0% |
| ! | ATTGATTCTTAGGAAAAGCT+TGG | + | chr2_3:476868-476887 | None:intergenic | 30.0% |
| AAGTGCTAGAAAAATTCTTC+TGG | - | chr2_3:476973-476992 | Msa0269550:intron | 30.0% | |
| !!! | TGGAGTTGTCTTTTTTATGA+AGG | - | chr2_3:476993-477012 | Msa0269550:CDS | 30.0% |
| !!! | TGTCTTTTTTATGAAGGCTT+TGG | - | chr2_3:476999-477018 | Msa0269550:CDS | 30.0% |
| ATACAAGTAAGTTTGTCTCT+TGG | + | chr2_3:477161-477180 | None:intergenic | 30.0% | |
| TTGTATTCTAAACTGTTGCA+AGG | - | chr2_3:477175-477194 | Msa0269550:intron | 30.0% | |
| ! | AAAGGCCTTATAATTAGGAA+CGG | + | chr2_3:477333-477352 | None:intergenic | 30.0% |
| TGCATCTACAAATTTGTAGA+GGG | + | chr2_3:477406-477425 | None:intergenic | 30.0% | |
| ATGCATCTACAAATTTGTAG+AGG | + | chr2_3:477407-477426 | None:intergenic | 30.0% | |
| ! | TAAGACCCATGATTTTTGTT+AGG | - | chr2_3:477486-477505 | Msa0269550:intron | 30.0% |
| GACATCCTAACAAAAATCAT+GGG | + | chr2_3:477494-477513 | None:intergenic | 30.0% | |
| ! | AGTAAAAGTATGGGAATGAT+AGG | + | chr2_3:477658-477677 | None:intergenic | 30.0% |
| ! | AAGTGGCAAAGTAAAAGTAT+GGG | + | chr2_3:477667-477686 | None:intergenic | 30.0% |
| AAAGTGGCAAAGTAAAAGTA+TGG | + | chr2_3:477668-477687 | None:intergenic | 30.0% | |
| TACTGAAAAACAAAGCAAAG+TGG | + | chr2_3:477684-477703 | None:intergenic | 30.0% | |
| ! | GCAAACTTTATTTGTACAAG+TGG | + | chr2_3:477715-477734 | None:intergenic | 30.0% |
| AAATATCATCTTGCAAACAC+TGG | - | chr2_3:477805-477824 | Msa0269550:intron | 30.0% | |
| ATGCATATTTGTGGGTAATA+TGG | + | chr2_3:477850-477869 | None:intergenic | 30.0% | |
| ! | AATGTCTTTTGAACTTCTCA+TGG | - | chr2_3:477915-477934 | Msa0269550:intron | 30.0% |
| CAAATCTACTGTACATACAA+AGG | - | chr2_3:478278-478297 | Msa0269550:intron | 30.0% | |
| ! | AATGTTTGAGATGAAGGATT+CGG | + | chr2_3:478365-478384 | None:intergenic | 30.0% |
| !! | TGCTGTACATGATTTTGATA+AGG | + | chr2_3:478493-478512 | None:intergenic | 30.0% |
| ! | TCTAATTTTGCATCAGATGA+TGG | + | chr2_3:478532-478551 | None:intergenic | 30.0% |
| TCTCAGATTTGGAGAATAAA+GGG | - | chr2_3:478605-478624 | Msa0269550:intron | 30.0% | |
| ATCGTTTGTAATTCTTTAGC+AGG | + | chr2_3:478732-478751 | None:intergenic | 30.0% | |
| ATTGTCTGAAGAATCTATTG+TGG | + | chr2_3:478944-478963 | None:intergenic | 30.0% | |
| ACAATAGATTCTTCAGACAA+TGG | - | chr2_3:478943-478962 | Msa0269550:CDS | 30.0% | |
| !!! | CTGAATCACTTTTTTTCTCA+GGG | + | chr2_3:479029-479048 | None:intergenic | 30.0% |
| ! | GAAAAAAAGTGATTCAGGTT+TGG | - | chr2_3:479032-479051 | Msa0269550:intron | 30.0% |
| TAGTTCTTATAGGTTATGAG+GGG | + | chr2_3:479092-479111 | None:intergenic | 30.0% | |
| ! | CTAGTTCTTATAGGTTATGA+GGG | + | chr2_3:479093-479112 | None:intergenic | 30.0% |
| ! | CTATTGTAGCTAGTTCTTAT+AGG | + | chr2_3:479102-479121 | None:intergenic | 30.0% |
| ! | AAAAAAGAGGGGTATATGAT+GGG | + | chr2_3:479132-479151 | None:intergenic | 30.0% |
| ! | AAAAAAAGAGGGGTATATGA+TGG | + | chr2_3:479133-479152 | None:intergenic | 30.0% |
| AGTTTACACAGACAGTGTAA+TGG | - | chr2_3:475037-475056 | Msa0269550:three_prime_UTR | 35.0% | |
| TTAAGATGGTGAATAGGAGA+AGG | + | chr2_3:475158-475177 | None:intergenic | 35.0% | |
| GGTTCGGATTGAAATTAAGA+TGG | + | chr2_3:475172-475191 | None:intergenic | 35.0% | |
| TCAGTGAATTGATTAGGGTT+CGG | + | chr2_3:475188-475207 | None:intergenic | 35.0% | |
| ! | TAATATGGAAGCTGCTTTCA+AGG | - | chr2_3:475307-475326 | Msa0269550:CDS | 35.0% |
| ! | CTACATCTACATTGCAGTTT+TGG | - | chr2_3:475531-475550 | Msa0269550:CDS | 35.0% |
| !! | CATTGCAGTTTTGGCAATAA+TGG | - | chr2_3:475540-475559 | Msa0269550:CDS | 35.0% |
| AATCACTTATGAGACTGTCT+GGG | + | chr2_3:475786-475805 | None:intergenic | 35.0% | |
| TAATCACTTATGAGACTGTC+TGG | + | chr2_3:475787-475806 | None:intergenic | 35.0% | |
| ACTAACCTATTAACTAAGGG+TGG | + | chr2_3:475884-475903 | None:intergenic | 35.0% | |
| AAAGATAGTTAGGCCAAACA+AGG | - | chr2_3:475916-475935 | Msa0269550:CDS | 35.0% | |
| ATAGGGATGAGTTATTAGTG+AGG | - | chr2_3:475953-475972 | Msa0269550:CDS | 35.0% | |
| TAGGGATGAGTTATTAGTGA+GGG | - | chr2_3:475954-475973 | Msa0269550:CDS | 35.0% | |
| CTAGCACTGTTTGTAATCAA+AGG | - | chr2_3:476010-476029 | Msa0269550:intron | 35.0% | |
| AGCACTGTTTGTAATCAAAG+GGG | - | chr2_3:476012-476031 | Msa0269550:intron | 35.0% | |
| TGAACAACTTTCAGAGAAGA+TGG | - | chr2_3:476208-476227 | Msa0269550:intron | 35.0% | |
| !! | CATGATGTTTCGTTCTGAAA+TGG | + | chr2_3:476281-476300 | None:intergenic | 35.0% |
| CATTTCAGAACGAAACATCA+TGG | - | chr2_3:476279-476298 | Msa0269550:intron | 35.0% | |
| TTCTCCGTGTTACACATTAT+AGG | - | chr2_3:476712-476731 | Msa0269550:intron | 35.0% | |
| GGTACCTATAATGTGTAACA+CGG | + | chr2_3:476719-476738 | None:intergenic | 35.0% | |
| ! | TTTTCAATTTGATGCACCAC+TGG | - | chr2_3:476896-476915 | Msa0269550:intron | 35.0% |
| TTTCAATTTGATGCACCACT+GGG | - | chr2_3:476897-476916 | Msa0269550:intron | 35.0% | |
| ACAGAAGATCAACATGTACA+AGG | - | chr2_3:477133-477152 | Msa0269550:CDS | 35.0% | |
| CTAAACTGTTGCAAGGTTAT+TGG | - | chr2_3:477182-477201 | Msa0269550:intron | 35.0% | |
| GCTAATCTATGTTACCCTAA+AGG | - | chr2_3:477274-477293 | Msa0269550:intron | 35.0% | |
| GAATGGAGTTTGTACCTTTA+GGG | + | chr2_3:477291-477310 | None:intergenic | 35.0% | |
| AGAATGGAGTTTGTACCTTT+AGG | + | chr2_3:477292-477311 | None:intergenic | 35.0% | |
| ! | TGTAGAGGGTCTTATATCTA+GGG | + | chr2_3:477392-477411 | None:intergenic | 35.0% |
| ! | TTGTAGAGGGTCTTATATCT+AGG | + | chr2_3:477393-477412 | None:intergenic | 35.0% |
| GGACATCCTAACAAAAATCA+TGG | + | chr2_3:477495-477514 | None:intergenic | 35.0% | |
| TGTTAGGATGTCCTATAAAG+AGG | - | chr2_3:477502-477521 | Msa0269550:intron | 35.0% | |
| GTTAGGATGTCCTATAAAGA+GGG | - | chr2_3:477503-477522 | Msa0269550:intron | 35.0% | |
| GTAGGACTTACGAATATGTA+GGG | - | chr2_3:477627-477646 | Msa0269550:intron | 35.0% | |
| ! | TCATGTGACTTTTGTACAAC+AGG | - | chr2_3:477760-477779 | Msa0269550:intron | 35.0% |
| TACAACAGGACAATGTTCAA+CGG | - | chr2_3:477774-477793 | Msa0269550:intron | 35.0% | |
| TATGGTTATGCTGTGATGAA+TGG | + | chr2_3:477832-477851 | None:intergenic | 35.0% | |
| TGGCACCTAAAATAGAGTTT+AGG | + | chr2_3:478170-478189 | None:intergenic | 35.0% | |
| !!! | TTTTAGGTGCCATTTTCATG+TGG | - | chr2_3:478178-478197 | Msa0269550:intron | 35.0% |
| ! | TTCTATTGGTGATACTATGC+AGG | - | chr2_3:478234-478253 | Msa0269550:intron | 35.0% |
| ! | TGCATCAATGTTTGAGATGA+AGG | + | chr2_3:478371-478390 | None:intergenic | 35.0% |
| AACTGAGTTTGAGAGAAACA+TGG | - | chr2_3:478411-478430 | Msa0269550:intron | 35.0% | |
| CTCTCAGATTTGGAGAATAA+AGG | - | chr2_3:478604-478623 | Msa0269550:intron | 35.0% | |
| CTCAGATTTGGAGAATAAAG+GGG | - | chr2_3:478606-478625 | Msa0269550:intron | 35.0% | |
| AGGGGCAAGTATGATAATTA+AGG | - | chr2_3:478624-478643 | Msa0269550:intron | 35.0% | |
| GGCAAGTATGATAATTAAGG+AGG | - | chr2_3:478627-478646 | Msa0269550:intron | 35.0% | |
| CCTACACTAGCAAACATATA+TGG | + | chr2_3:478682-478701 | None:intergenic | 35.0% | |
| ! | CCATATATGTTTGCTAGTGT+AGG | - | chr2_3:478679-478698 | Msa0269550:intron | 35.0% |
| TTTGGAAAGACACACATACT+TGG | + | chr2_3:478761-478780 | None:intergenic | 35.0% | |
| AAGTATGTGTGTCTTTCCAA+AGG | - | chr2_3:478760-478779 | Msa0269550:intron | 35.0% | |
| ! | GCATTAATTTGAGGATTGGA+TGG | + | chr2_3:478814-478833 | None:intergenic | 35.0% |
| ! | CTGAGCATTAATTTGAGGAT+TGG | + | chr2_3:478818-478837 | None:intergenic | 35.0% |
| !!! | GCATTATTTTGAGGATTGGA+TGG | + | chr2_3:478898-478917 | None:intergenic | 35.0% |
| !!! | CTGAGCATTATTTTGAGGAT+TGG | + | chr2_3:478902-478921 | None:intergenic | 35.0% |
| CAATCCTCAAAATAATGCTC+AGG | - | chr2_3:478900-478919 | Msa0269550:intron | 35.0% | |
| ! | GATTTTTCATTGGAAGCTAC+AGG | + | chr2_3:478970-478989 | None:intergenic | 35.0% |
| !!! | CCTGAATCACTTTTTTTCTC+AGG | + | chr2_3:479030-479049 | None:intergenic | 35.0% |
| CCTGAGAAAAAAAGTGATTC+AGG | - | chr2_3:479027-479046 | Msa0269550:CDS | 35.0% | |
| AGTTCTTATAGGTTATGAGG+GGG | + | chr2_3:479091-479110 | None:intergenic | 35.0% | |
| ! | GCTAGTTCTTATAGGTTATG+AGG | + | chr2_3:479094-479113 | None:intergenic | 35.0% |
| ! | ATTTTAGATTTCCCCTTGTG+TGG | - | chr2_3:479181-479200 | Msa0269550:CDS | 35.0% |
| ACACTGTCTGTGTAAACTGT+TGG | + | chr2_3:475035-475054 | None:intergenic | 40.0% | |
| TTTCAAGGCTCATCCTCTTT+GGG | - | chr2_3:475322-475341 | Msa0269550:CDS | 40.0% | |
| ACGGAAGAAACTAACTTCAC+CGG | + | chr2_3:475378-475397 | None:intergenic | 40.0% | |
| ACAGTCCACCCTTAGTTAAT+AGG | - | chr2_3:475876-475895 | Msa0269550:CDS | 40.0% | |
| ! | GAGAGCGTGTAAAGATAGTT+AGG | - | chr2_3:475906-475925 | Msa0269550:CDS | 40.0% |
| AAGGCATGCTCCCTATAAAT+AGG | - | chr2_3:475935-475954 | Msa0269550:CDS | 40.0% | |
| AGGCATGCTCCCTATAAATA+GGG | - | chr2_3:475936-475955 | Msa0269550:CDS | 40.0% | |
| AGGGATGAGTTATTAGTGAG+GGG | - | chr2_3:475955-475974 | Msa0269550:CDS | 40.0% | |
| TGAGGGGATTATCTTGTCAT+TGG | - | chr2_3:475971-475990 | Msa0269550:CDS | 40.0% | |
| GAGGGGATTATCTTGTCATT+GGG | - | chr2_3:475972-475991 | Msa0269550:CDS | 40.0% | |
| AAACAGTGCTAGCACTTCAA+GGG | + | chr2_3:476002-476021 | None:intergenic | 40.0% | |
| AGGAAACTGATAGAACCAAC+TGG | + | chr2_3:476066-476085 | None:intergenic | 40.0% | |
| TGATTGATTGCTCTTACCTC+TGG | - | chr2_3:476094-476113 | Msa0269550:intron | 40.0% | |
| GATTGATTGCTCTTACCTCT+GGG | - | chr2_3:476095-476114 | Msa0269550:intron | 40.0% | |
| TGTACATGATCAAAACCCAG+AGG | + | chr2_3:476113-476132 | None:intergenic | 40.0% | |
| !! | TCTGGGTTTTGATCATGTAC+AGG | - | chr2_3:476112-476131 | Msa0269550:intron | 40.0% |
| !! | CTGGGTTTTGATCATGTACA+GGG | - | chr2_3:476113-476132 | Msa0269550:intron | 40.0% |
| TGGAACTGAAGCAAATACAC+GGG | + | chr2_3:476171-476190 | None:intergenic | 40.0% | |
| CTGGAACTGAAGCAAATACA+CGG | + | chr2_3:476172-476191 | None:intergenic | 40.0% | |
| ! | GGCTTGATGTCCAAATTTTC+TGG | + | chr2_3:476257-476276 | None:intergenic | 40.0% |
| !! | GATGTTTCGTTCTGAAATGG+TGG | + | chr2_3:476278-476297 | None:intergenic | 40.0% |
| TCAGAACGAAACATCATGGT+TGG | - | chr2_3:476283-476302 | Msa0269550:intron | 40.0% | |
| AACTTTGGTCGCTAGTTAGT+TGG | + | chr2_3:476556-476575 | None:intergenic | 40.0% | |
| AGGAAGAAATTCATCAGCTC+CGG | + | chr2_3:477252-477271 | None:intergenic | 40.0% | |
| AGGGTAACATAGATTAGCAC+AGG | + | chr2_3:477272-477291 | None:intergenic | 40.0% | |
| TCCCTCCGTTCCTAATTATA+AGG | - | chr2_3:477325-477344 | Msa0269550:intron | 40.0% | |
| GCCTTATAATTAGGAACGGA+GGG | + | chr2_3:477329-477348 | None:intergenic | 40.0% | |
| GGGACAAAACTTTAGACCAT+TGG | + | chr2_3:477372-477391 | None:intergenic | 40.0% | |
| GGTAGGACTTACGAATATGT+AGG | - | chr2_3:477626-477645 | Msa0269550:intron | 40.0% | |
| ACAACAGGACAATGTTCAAC+GGG | - | chr2_3:477775-477794 | Msa0269550:intron | 40.0% | |
| AGTAGATTTGAGTGCAGTTG+TGG | + | chr2_3:478268-478287 | None:intergenic | 40.0% | |
| ! | TGATGCAAATGCCATTTCGA+TGG | - | chr2_3:478384-478403 | Msa0269550:intron | 40.0% |
| CTCAGTTTCATCCATCGAAA+TGG | + | chr2_3:478398-478417 | None:intergenic | 40.0% | |
| AGTTCCATCACTCTCAGATT+TGG | - | chr2_3:478594-478613 | Msa0269550:intron | 40.0% | |
| TTCTCCAAATCTGAGAGTGA+TGG | + | chr2_3:478601-478620 | None:intergenic | 40.0% | |
| TGTGTGTCTTTCCAAAGGAT+TGG | - | chr2_3:478765-478784 | Msa0269550:intron | 40.0% | |
| GTGTGTCTTTCCAAAGGATT+GGG | - | chr2_3:478766-478785 | Msa0269550:intron | 40.0% | |
| TCCTCAAATTAATGCTCAGC+AGG | - | chr2_3:478819-478838 | Msa0269550:intron | 40.0% | |
| ! | TCCTGCTGAGCATTAATTTG+AGG | + | chr2_3:478823-478842 | None:intergenic | 40.0% |
| ATGTTGAAACCCTTTCCAGA+GGG | - | chr2_3:478845-478864 | Msa0269550:intron | 40.0% | |
| !! | TGGTCCTGAGCATTATTTTG+AGG | + | chr2_3:478907-478926 | None:intergenic | 40.0% |
| TTGTGGTCTCACTCTTAACA+TGG | + | chr2_3:478927-478946 | None:intergenic | 40.0% | |
| AAAGTCTCCTGATACATCAG+AGG | - | chr2_3:478993-479012 | Msa0269550:CDS | 40.0% | |
| GAGTTATCCTCTGATGTATC+AGG | + | chr2_3:479003-479022 | None:intergenic | 40.0% | |
| AAAGGACAGTTACCACACAA+GGG | + | chr2_3:479196-479215 | None:intergenic | 40.0% | |
| AAAAGGACAGTTACCACACA+AGG | + | chr2_3:479197-479216 | None:intergenic | 40.0% | |
| !! | TGACATAGTGATAGTGGTCA+TGG | + | chr2_3:479236-479255 | None:intergenic | 40.0% |
| AGGAGATGACATAGTGATAG+TGG | + | chr2_3:479242-479261 | None:intergenic | 40.0% | |
| AAGGAAGTCGTGTAAACCAG+AGG | + | chr2_3:475078-475097 | None:intergenic | 45.0% | |
| GATTGCTTTGACGAAATCGG+CGG | + | chr2_3:475123-475142 | None:intergenic | 45.0% | |
| GATGGTGAATAGGAGAAGGA+AGG | + | chr2_3:475154-475173 | None:intergenic | 45.0% | |
| CTTTCAAGGCTCATCCTCTT+TGG | - | chr2_3:475321-475340 | Msa0269550:CDS | 45.0% | |
| ! | GATGATGAACTCGAAAGTGC+CGG | - | chr2_3:475356-475375 | Msa0269550:CDS | 45.0% |
| ! | TATAGGGAGCATGCCTTGTT+TGG | + | chr2_3:475932-475951 | None:intergenic | 45.0% |
| CAAACAGTGCTAGCACTTCA+AGG | + | chr2_3:476003-476022 | None:intergenic | 45.0% | |
| GGAACTGAAGCAAATACACG+GGG | + | chr2_3:476170-476189 | None:intergenic | 45.0% | |
| GTCGCTAGTTAGTTGGCATT+GGG | + | chr2_3:476549-476568 | None:intergenic | 45.0% | |
| TGTGTAACACGGAGAAAGCA+TGG | + | chr2_3:476708-476727 | None:intergenic | 45.0% | |
| GCTTCCAAAGATAATCCTCC+CGG | - | chr2_3:477230-477249 | Msa0269550:intron | 45.0% | |
| GGAAGAAATTCATCAGCTCC+GGG | + | chr2_3:477251-477270 | None:intergenic | 45.0% | |
| ! | GGCCTTATAATTAGGAACGG+AGG | + | chr2_3:477330-477349 | None:intergenic | 45.0% |
| AGGATGTCCTATAAAGAGGG+TGG | - | chr2_3:477506-477525 | Msa0269550:intron | 45.0% | |
| GGATGTCCTATAAAGAGGGT+GGG | - | chr2_3:477507-477526 | Msa0269550:intron | 45.0% | |
| AGTCTCACAGTCACATACGT+AGG | + | chr2_3:478035-478054 | None:intergenic | 45.0% | |
| GATTTGAGTGCAGTTGTGGA+GGG | + | chr2_3:478264-478283 | None:intergenic | 45.0% | |
| AGATTTGAGTGCAGTTGTGG+AGG | + | chr2_3:478265-478284 | None:intergenic | 45.0% | |
| GTTTAGACGCCAATCTCGTT+TGG | - | chr2_3:478300-478319 | Msa0269550:intron | 45.0% | |
| TTTGCTCGTGCTCTTCTTTC+AGG | - | chr2_3:478436-478455 | Msa0269550:intron | 45.0% | |
| TTGCTCGTGCTCTTCTTTCA+GGG | - | chr2_3:478437-478456 | Msa0269550:intron | 45.0% | |
| AGAAGAGACACCCAATCCTT+TGG | + | chr2_3:478779-478798 | None:intergenic | 45.0% | |
| ! | CTCTGGAAAGGGTTTCAACA+TGG | + | chr2_3:478846-478865 | None:intergenic | 45.0% |
| CATGTTGAAACCCTTTCCAG+AGG | - | chr2_3:478844-478863 | Msa0269550:intron | 45.0% | |
| AACATGAGATGAAGAGGAGG+AGG | + | chr2_3:478875-478894 | None:intergenic | 45.0% | |
| TGGAACATGAGATGAAGAGG+AGG | + | chr2_3:478878-478897 | None:intergenic | 45.0% | |
| GGATGGAACATGAGATGAAG+AGG | + | chr2_3:478881-478900 | None:intergenic | 45.0% | |
| ! | AAGTGATTCAGGTTTGGCAC+AGG | - | chr2_3:479038-479057 | Msa0269550:intron | 45.0% |
| AAGGACAGTTACCACACAAG+GGG | + | chr2_3:479195-479214 | None:intergenic | 45.0% | |
| !! | AAATTTAAATTATAAGAATA+GGG | + | chr2_3:476665-476684 | None:intergenic | 5.0% |
| !! | TAAATTTAAATTATAAGAAT+AGG | + | chr2_3:476666-476685 | None:intergenic | 5.0% |
| ! | GTGTAAACCAGAGGAAGCGT+CGG | + | chr2_3:475069-475088 | None:intergenic | 50.0% |
| TCACTGTCTCTCTCAGGATC+GGG | + | chr2_3:475266-475285 | None:intergenic | 50.0% | |
| GTCACTGTCTCTCTCAGGAT+CGG | + | chr2_3:475267-475286 | None:intergenic | 50.0% | |
| GGTCGCTAGTTAGTTGGCAT+TGG | + | chr2_3:476550-476569 | None:intergenic | 50.0% | |
| TGTGGCTAATGAGAACCCAG+TGG | + | chr2_3:476915-476934 | None:intergenic | 50.0% | |
| CTAGCACTTCGTCCCACAAT+TGG | + | chr2_3:476962-476981 | None:intergenic | 50.0% | |
| AGCTCCGGGAGGATTATCTT+TGG | + | chr2_3:477237-477256 | None:intergenic | 50.0% | |
| AGAAATTCATCAGCTCCGGG+AGG | + | chr2_3:477248-477267 | None:intergenic | 50.0% | |
| TGTCCTATAAAGAGGGTGGG+AGG | - | chr2_3:477510-477529 | Msa0269550:intron | 50.0% | |
| GTCCTATAAAGAGGGTGGGA+GGG | - | chr2_3:477511-477530 | Msa0269550:intron | 50.0% | |
| AGACGCCAATCTCGTTTGGT+TGG | - | chr2_3:478304-478323 | Msa0269550:intron | 50.0% | |
| GACGCCAATCTCGTTTGGTT+GGG | - | chr2_3:478305-478324 | Msa0269550:intron | 50.0% | |
| ACGCCAATCTCGTTTGGTTG+GGG | - | chr2_3:478306-478325 | Msa0269550:intron | 50.0% | |
| CTTCCCCAACCAAACGAGAT+TGG | + | chr2_3:478312-478331 | None:intergenic | 50.0% | |
| ! | TTCAGGTTTGGCACAGGATG+AGG | - | chr2_3:479044-479063 | Msa0269550:intron | 50.0% |
| TTTGACGAAATCGGCGGCAG+CGG | + | chr2_3:475117-475136 | None:intergenic | 55.0% | |
| AAGGCTCATCCTCTTTGGGC+TGG | - | chr2_3:475326-475345 | Msa0269550:CDS | 55.0% | |
| TCAGAGCAACCAGCCCAAAG+AGG | + | chr2_3:475338-475357 | None:intergenic | 55.0% | |
| CTCCCTCCCACCCTCTTTAT+AGG | + | chr2_3:477516-477535 | None:intergenic | 55.0% | |
| ! | GGAGGCTAACCCTCTGGAAA+GGG | + | chr2_3:478857-478876 | None:intergenic | 55.0% |
| ! | AGGAGGCTAACCCTCTGGAA+AGG | + | chr2_3:478858-478877 | None:intergenic | 55.0% |
| GATCGCTCGCGTCACTGTGT+CGG | - | chr2_3:474987-475006 | Msa0269550:three_prime_UTR | 60.0% | |
| GAAAACGCCGACGCTTCCTC+TGG | - | chr2_3:475059-475078 | Msa0269550:three_prime_UTR | 60.0% | |
| TTGACGAAATCGGCGGCAGC+GGG | + | chr2_3:475116-475135 | None:intergenic | 60.0% | |
| ACGGCGTCACTGTCTCTCTC+AGG | + | chr2_3:475272-475291 | None:intergenic | 60.0% | |
| AGAGGAGGAGGCTAACCCTC+TGG | + | chr2_3:478863-478882 | None:intergenic | 60.0% | |
| GATGAGGCAGCTGCACCAGA+GGG | - | chr2_3:479060-479079 | Msa0269550:intron | 60.0% | |
| ! | CGGGTTGACGCATGCGCTCA+AGG | + | chr2_3:475097-475116 | None:intergenic | 65.0% |
| GGATGAGGCAGCTGCACCAG+AGG | - | chr2_3:479059-479078 | Msa0269550:intron | 65.0% | |
| !! | TATGAGGGGGCACCACCCTC+TGG | + | chr2_3:479078-479097 | None:intergenic | 65.0% |
| GAGGCAGCTGCACCAGAGGG+TGG | - | chr2_3:479063-479082 | Msa0269550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 474961 | 479322 | 474961 | ID=Msa0269550;Name=Msa0269550 |
| chr2_3 | mRNA | 474961 | 479322 | 474961 | ID=Msa0269550-mRNA-1;Parent=Msa0269550;Name=Msa0269550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|5|224|477 |
| chr2_3 | exon | 474961 | 476027 | 474961 | ID=Msa0269550-mRNA-1:exon:203;Parent=Msa0269550-mRNA-1 |
| chr2_3 | exon | 476988 | 477167 | 476988 | ID=Msa0269550-mRNA-1:exon:202;Parent=Msa0269550-mRNA-1 |
| chr2_3 | exon | 477979 | 478149 | 477979 | ID=Msa0269550-mRNA-1:exon:201;Parent=Msa0269550-mRNA-1 |
| chr2_3 | exon | 478901 | 479048 | 478901 | ID=Msa0269550-mRNA-1:exon:200;Parent=Msa0269550-mRNA-1 |
| chr2_3 | exon | 479136 | 479322 | 479136 | ID=Msa0269550-mRNA-1:exon:199;Parent=Msa0269550-mRNA-1 |
| chr2_3 | five_prime_UTR | 479228 | 479322 | 479228 | ID=Msa0269550-mRNA-1:five_prime_utr;Parent=Msa0269550-mRNA-1 |
| chr2_3 | CDS | 479136 | 479227 | 479136 | ID=Msa0269550-mRNA-1:cds;Parent=Msa0269550-mRNA-1 |
| chr2_3 | CDS | 478901 | 479048 | 478901 | ID=Msa0269550-mRNA-1:cds;Parent=Msa0269550-mRNA-1 |
| chr2_3 | CDS | 477979 | 478149 | 477979 | ID=Msa0269550-mRNA-1:cds;Parent=Msa0269550-mRNA-1 |
| chr2_3 | CDS | 476988 | 477167 | 476988 | ID=Msa0269550-mRNA-1:cds;Parent=Msa0269550-mRNA-1 |
| chr2_3 | CDS | 475185 | 476027 | 475185 | ID=Msa0269550-mRNA-1:cds;Parent=Msa0269550-mRNA-1 |
| chr2_3 | three_prime_UTR | 474961 | 475184 | 474961 | ID=Msa0269550-mRNA-1:three_prime_utr;Parent=Msa0269550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
