Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430540 | XP_003601131.1 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430540 | sp|Q9LT31|VPS9A_ARATH | 64.541 | 392 | 121 | 3 | 1 | 375 | 1 | 391 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430540 | G7J457 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092420 | Msa1430540 | 0.829286 | 5.605284e-55 | -8.615850e-47 |
| Msa1363690 | Msa1430540 | 0.815733 | 7.948336e-52 | -8.615850e-47 |
| Msa1396550 | Msa1430540 | 0.812916 | 3.331351e-51 | -8.615850e-47 |
| Msa0269550 | Msa1430540 | 0.988826 | 1.443186e-175 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430540 | MtrunA17_Chr3g0115241 | 97.280 | 478 | 12 | 1 | 1 | 477 | 1 | 478 | 0.0 | 944 |
| Msa1430540 | MtrunA17_Chr3g0079541 | 44.271 | 384 | 166 | 5 | 10 | 380 | 13 | 361 | 3.46e-110 | 332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430540 | AT3G19770.1 | 64.541 | 392 | 121 | 3 | 1 | 375 | 1 | 391 | 0.0 | 521 |
| Msa1430540 | AT5G09320.1 | 63.472 | 386 | 121 | 5 | 1 | 375 | 1 | 377 | 5.53e-174 | 496 |
| Msa1430540 | AT3G19770.2 | 60.547 | 256 | 83 | 3 | 137 | 375 | 1 | 255 | 1.09e-100 | 307 |
Find 111 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTCGTGCTCTTCTTTC+AGG | 0.092648 | tig0026696:-23407 | Msa1430540:CDS |
| CTTTCAAGGCTCATCCTCTT+TGG | 0.147130 | tig0026696:-26522 | Msa1430540:CDS |
| CTAAACTGTTGCAAGGTTAT+TGG | 0.183133 | tig0026696:-24661 | Msa1430540:CDS |
| CTATTGTAGCTAGTTCTTAT+AGG | 0.213537 | tig0026696:+22744 | None:intergenic |
| ACAAGACTTTCTTGCTAATA+TGG | 0.214200 | tig0026696:-26551 | Msa1430540:CDS |
| GTTTATTCGACCAGAAAATT+TGG | 0.230820 | tig0026696:-25599 | Msa1430540:CDS |
| GAATGGAGTTTGTACCTTTA+GGG | 0.246408 | tig0026696:+24555 | None:intergenic |
| TTTCAAGGCTCATCCTCTTT+GGG | 0.304407 | tig0026696:-26521 | Msa1430540:CDS |
| AGTTCCATCACTCTCAGATT+TGG | 0.309468 | tig0026696:-23249 | Msa1430540:CDS |
| CTCTCAGATTTGGAGAATAA+AGG | 0.325043 | tig0026696:-23239 | Msa1430540:CDS |
| CCTACACTAGCAAACATATA+TGG | 0.326586 | tig0026696:+23164 | None:intergenic |
| TGCATCAATGTTTGAGATGA+AGG | 0.345631 | tig0026696:+23475 | None:intergenic |
| AGGGGCAAGTATGATAATTA+AGG | 0.358711 | tig0026696:-23219 | Msa1430540:CDS |
| GCTAGTTCTTATAGGTTATG+AGG | 0.365525 | tig0026696:+22752 | None:intergenic |
| GACGCCAATCTCGTTTGGTT+GGG | 0.368934 | tig0026696:-23538 | Msa1430540:CDS |
| AGCTCCGGGAGGATTATCTT+TGG | 0.379653 | tig0026696:+24609 | None:intergenic |
| TCTCAGATTTGGAGAATAAA+GGG | 0.386680 | tig0026696:-23238 | Msa1430540:CDS |
| TTGCTCGTGCTCTTCTTTCA+GGG | 0.402976 | tig0026696:-23406 | Msa1430540:CDS |
| TAATATGGAAGCTGCTTTCA+AGG | 0.406354 | tig0026696:-26536 | Msa1430540:CDS |
| TTTGATTGCTTTGACGAAAT+CGG | 0.409299 | tig0026696:+26720 | None:intergenic |
| AGAAGAGACACCCAATCCTT+TGG | 0.414430 | tig0026696:+23067 | None:intergenic |
| ATCGTTTGTAATTCTTTAGC+AGG | 0.422513 | tig0026696:+23114 | None:intergenic |
| GAGTTATCCTCTGATGTATC+AGG | 0.425915 | tig0026696:+22843 | None:intergenic |
| GTTTAGACGCCAATCTCGTT+TGG | 0.428125 | tig0026696:-23543 | Msa1430540:CDS |
| CTGAGCATTAATTTGAGGAT+TGG | 0.430065 | tig0026696:+23028 | None:intergenic |
| AAGGCTCATCCTCTTTGGGC+TGG | 0.435705 | tig0026696:-26517 | Msa1430540:CDS |
| TTTGGAAAGACACACATACT+TGG | 0.443460 | tig0026696:+23085 | None:intergenic |
| TCCTGCTGAGCATTAATTTG+AGG | 0.443479 | tig0026696:+23023 | None:intergenic |
| GTGTGTCTTTCCAAAGGATT+GGG | 0.451990 | tig0026696:-23077 | Msa1430540:CDS |
| CTCAGTTTCATCCATCGAAA+TGG | 0.455170 | tig0026696:+23448 | None:intergenic |
| AGGAAGAAATTCATCAGCTC+CGG | 0.457159 | tig0026696:+24594 | None:intergenic |
| GTCACTGTCTCTCTCAGGAT+CGG | 0.459367 | tig0026696:+26579 | None:intergenic |
| CTTCCCCAACCAAACGAGAT+TGG | 0.465068 | tig0026696:+23534 | None:intergenic |
| ATACAAGTAAGTTTGTCTCT+TGG | 0.467430 | tig0026696:+24685 | None:intergenic |
| AGACGCCAATCTCGTTTGGT+TGG | 0.468552 | tig0026696:-23539 | Msa1430540:CDS |
| TTTGACGAAATCGGCGGCAG+CGG | 0.469527 | tig0026696:+26729 | None:intergenic |
| CATGATGTTTCGTTCTGAAA+TGG | 0.469832 | tig0026696:+25565 | None:intergenic |
| TGAACAACTTTCAGAGAAGA+TGG | 0.470154 | tig0026696:-25635 | Msa1430540:CDS |
| TCCTCAAATTAATGCTCAGC+AGG | 0.475789 | tig0026696:-23024 | Msa1430540:CDS |
| AATGTTTGAGATGAAGGATT+CGG | 0.475951 | tig0026696:+23481 | None:intergenic |
| TTCAGGTTTGGCACAGGATG+AGG | 0.476857 | tig0026696:-22799 | Msa1430540:CDS |
| GAAAACGCCGACGCTTCCTC+TGG | 0.479356 | tig0026696:-26784 | Msa1430540:CDS |
| CGGGTTGACGCATGCGCTCA+AGG | 0.480136 | tig0026696:+26749 | None:intergenic |
| GATTTGAGTGCAGTTGTGGA+GGG | 0.482098 | tig0026696:+23582 | None:intergenic |
| TTGACGAAATCGGCGGCAGC+GGG | 0.482889 | tig0026696:+26730 | None:intergenic |
| TCACTGTCTCTCTCAGGATC+GGG | 0.494208 | tig0026696:+26580 | None:intergenic |
| CTAGTTCTTATAGGTTATGA+GGG | 0.503046 | tig0026696:+22753 | None:intergenic |
| ATTTCGTCAAAGCAATCAAA+AGG | 0.504467 | tig0026696:-26717 | Msa1430540:intron |
| TGTGTGTCTTTCCAAAGGAT+TGG | 0.507736 | tig0026696:-23078 | Msa1430540:CDS |
| CAATCCTCAAAATAATGCTC+AGG | 0.511468 | tig0026696:-22943 | Msa1430540:CDS |
| ACGCCAATCTCGTTTGGTTG+GGG | 0.518389 | tig0026696:-23537 | Msa1430540:CDS |
| AGTAGATTTGAGTGCAGTTG+TGG | 0.522864 | tig0026696:+23578 | None:intergenic |
| GATCGCTCGCGTCACTGTGT+CGG | 0.531113 | tig0026696:-26856 | Msa1430540:five_prime_UTR |
| ACGGCGTCACTGTCTCTCTC+AGG | 0.531238 | tig0026696:+26574 | None:intergenic |
| GCTAATCTATGTTACCCTAA+AGG | 0.536558 | tig0026696:-24569 | Msa1430540:intron |
| AAGTGATTCAGGTTTGGCAC+AGG | 0.537557 | tig0026696:-22805 | Msa1430540:CDS |
| TTCTCCAAATCTGAGAGTGA+TGG | 0.537645 | tig0026696:+23245 | None:intergenic |
| ACACTGTCTGTGTAAACTGT+TGG | 0.540292 | tig0026696:+26811 | None:intergenic |
| TCAGAACGAAACATCATGGT+TGG | 0.544171 | tig0026696:-25560 | Msa1430540:intron |
| GCTTCCAAAGATAATCCTCC+CGG | 0.544270 | tig0026696:-24613 | Msa1430540:CDS |
| GCATTAATTTGAGGATTGGA+TGG | 0.545127 | tig0026696:+23032 | None:intergenic |
| AAGTATGTGTGTCTTTCCAA+AGG | 0.547865 | tig0026696:-23083 | Msa1430540:CDS |
| GGAGGCTAACCCTCTGGAAA+GGG | 0.548700 | tig0026696:+22989 | None:intergenic |
| AGGAGATGACATAGTGATAG+TGG | 0.549356 | tig0026696:+22604 | None:intergenic |
| CCATATATGTTTGCTAGTGT+AGG | 0.550230 | tig0026696:-23164 | Msa1430540:CDS |
| AGGGTAACATAGATTAGCAC+AGG | 0.551339 | tig0026696:+24574 | None:intergenic |
| AGGAGGCTAACCCTCTGGAA+AGG | 0.552204 | tig0026696:+22988 | None:intergenic |
| CATTTCAGAACGAAACATCA+TGG | 0.552754 | tig0026696:-25564 | Msa1430540:CDS |
| AGATTTGAGTGCAGTTGTGG+AGG | 0.554178 | tig0026696:+23581 | None:intergenic |
| AGAGGAGGAGGCTAACCCTC+TGG | 0.554787 | tig0026696:+22983 | None:intergenic |
| AGTTTACACAGACAGTGTAA+TGG | 0.561442 | tig0026696:-26806 | Msa1430540:exon |
| GGATGGAACATGAGATGAAG+AGG | 0.561692 | tig0026696:+22965 | None:intergenic |
| TGGAACATGAGATGAAGAGG+AGG | 0.562317 | tig0026696:+22968 | None:intergenic |
| GGAAGAAATTCATCAGCTCC+GGG | 0.564520 | tig0026696:+24595 | None:intergenic |
| TGACATAGTGATAGTGGTCA+TGG | 0.567790 | tig0026696:+22610 | None:intergenic |
| ACGGAAGAAACTAACTTCAC+CGG | 0.568114 | tig0026696:+26468 | None:intergenic |
| TTGTATTCTAAACTGTTGCA+AGG | 0.570078 | tig0026696:-24668 | Msa1430540:CDS |
| AACATGAGATGAAGAGGAGG+AGG | 0.575942 | tig0026696:+22971 | None:intergenic |
| GAGGCAGCTGCACCAGAGGG+TGG | 0.577158 | tig0026696:-22780 | Msa1430540:CDS |
| GGCAAGTATGATAATTAAGG+AGG | 0.579130 | tig0026696:-23216 | Msa1430540:CDS |
| TTGTGGTCTCACTCTTAACA+TGG | 0.581797 | tig0026696:+22919 | None:intergenic |
| TGATGCAAATGCCATTTCGA+TGG | 0.585306 | tig0026696:-23459 | Msa1430540:CDS |
| GATGATGAACTCGAAAGTGC+CGG | 0.587723 | tig0026696:-26487 | Msa1430540:CDS |
| CTCTGGAAAGGGTTTCAACA+TGG | 0.588017 | tig0026696:+23000 | None:intergenic |
| GGATGAGGCAGCTGCACCAG+AGG | 0.592274 | tig0026696:-22784 | Msa1430540:CDS |
| CAAATCTACTGTACATACAA+AGG | 0.593182 | tig0026696:-23565 | Msa1430540:CDS |
| GATGTTTCGTTCTGAAATGG+TGG | 0.597900 | tig0026696:+25568 | None:intergenic |
| ACAATAGATTCTTCAGACAA+TGG | 0.598478 | tig0026696:-22900 | Msa1430540:CDS |
| TGGAACTGAAGCAAATACAC+GGG | 0.606683 | tig0026696:+25675 | None:intergenic |
| ATTAGCAAGAAAGTCTTGTA+CGG | 0.609996 | tig0026696:+26555 | None:intergenic |
| CTGGAACTGAAGCAAATACA+CGG | 0.612874 | tig0026696:+25674 | None:intergenic |
| GATGAGGCAGCTGCACCAGA+GGG | 0.615534 | tig0026696:-22783 | Msa1430540:CDS |
| AAAAGGACAGTTACCACACA+AGG | 0.616602 | tig0026696:+22649 | None:intergenic |
| CATGTTGAAACCCTTTCCAG+AGG | 0.617877 | tig0026696:-22999 | Msa1430540:CDS |
| ATGTTGAAACCCTTTCCAGA+GGG | 0.618383 | tig0026696:-22998 | Msa1430540:CDS |
| ACAGAAGATCAACATGTACA+AGG | 0.620589 | tig0026696:-24710 | Msa1430540:CDS |
| AACTGAGTTTGAGAGAAACA+TGG | 0.628613 | tig0026696:-23432 | Msa1430540:CDS |
| TCAGAGCAACCAGCCCAAAG+AGG | 0.635777 | tig0026696:+26508 | None:intergenic |
| TAGTTCTTATAGGTTATGAG+GGG | 0.640645 | tig0026696:+22754 | None:intergenic |
| ATTGTCTGAAGAATCTATTG+TGG | 0.654771 | tig0026696:+22902 | None:intergenic |
| AAAGTCTCCTGATACATCAG+AGG | 0.656909 | tig0026696:-22850 | Msa1430540:CDS |
| CTCAGATTTGGAGAATAAAG+GGG | 0.658898 | tig0026696:-23237 | Msa1430540:CDS |
| GTTTAAGAATAATGTTACAG+AGG | 0.659041 | tig0026696:+22584 | None:intergenic |
| AAGGACAGTTACCACACAAG+GGG | 0.659236 | tig0026696:+22651 | None:intergenic |
| AAAGGACAGTTACCACACAA+GGG | 0.671725 | tig0026696:+22650 | None:intergenic |
| GTGTAAACCAGAGGAAGCGT+CGG | 0.675079 | tig0026696:+26777 | None:intergenic |
| AAGGAAGTCGTGTAAACCAG+AGG | 0.678101 | tig0026696:+26768 | None:intergenic |
| AGTTCTTATAGGTTATGAGG+GGG | 0.679075 | tig0026696:+22755 | None:intergenic |
| GATTGCTTTGACGAAATCGG+CGG | 0.701074 | tig0026696:+26723 | None:intergenic |
| AGAAATTCATCAGCTCCGGG+AGG | 0.733938 | tig0026696:+24598 | None:intergenic |
| GGAACTGAAGCAAATACACG+GGG | 0.751718 | tig0026696:+25676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATGAAAATAAGAATA+CGG | + | tig0026696:22979-22998 | None:intergenic | 10.0% |
| !! | AAATTAAATATCTTCAATTA+TGG | + | tig0026696:23020-23039 | None:intergenic | 10.0% |
| !!! | ATATTTTATCATTAGAAAAA+AGG | - | tig0026696:23964-23983 | Msa1430540:intron | 10.0% |
| !!! | AAATAACTAGTTTGTTAATT+AGG | - | tig0026696:23201-23220 | Msa1430540:CDS | 15.0% |
| !! | TATGTATTTCTTAATAACTT+TGG | + | tig0026696:24153-24172 | None:intergenic | 15.0% |
| !! | TTATTTACAAACTAATATTG+TGG | + | tig0026696:24515-24534 | None:intergenic | 15.0% |
| !!! | GTCAAAATTGTAATTTTTAT+TGG | + | tig0026696:24607-24626 | None:intergenic | 15.0% |
| !! | AGAGAGAATATAAAATTTAA+GGG | + | tig0026696:24661-24680 | None:intergenic | 15.0% |
| !! | ATTATTTATTAGAAAAGTGA+AGG | + | tig0026696:25187-25206 | None:intergenic | 15.0% |
| !!! | TTCACTTTTCTAATAAATAA+TGG | - | tig0026696:25186-25205 | Msa1430540:intron | 15.0% |
| !!! | TCACTTTTCTAATAAATAAT+GGG | - | tig0026696:25187-25206 | Msa1430540:intron | 15.0% |
| !! | TAAAATATATGCATATTTGT+GGG | + | tig0026696:25440-25459 | None:intergenic | 15.0% |
| !! | ATAAAATATATGCATATTTG+TGG | + | tig0026696:25441-25460 | None:intergenic | 15.0% |
| !! | AGTAAAAGAAAAAAAAAAGA+GGG | + | tig0026696:26726-26745 | None:intergenic | 15.0% |
| !! | GGTATATTATGATTGAAAAT+GGG | + | tig0026696:23627-23646 | None:intergenic | 20.0% |
| !! | TGGTATATTATGATTGAAAA+TGG | + | tig0026696:23628-23647 | None:intergenic | 20.0% |
| !! | GATAAAATATTGTTATCGTT+GGG | + | tig0026696:23954-23973 | None:intergenic | 20.0% |
| !! | TGATAAAATATTGTTATCGT+TGG | + | tig0026696:23955-23974 | None:intergenic | 20.0% |
| !!! | TTTAAAACTGAACTAAAAGA+CGG | + | tig0026696:24081-24100 | None:intergenic | 20.0% |
| !!! | AATTGAATCAATTGATTCTT+AGG | + | tig0026696:24460-24479 | None:intergenic | 20.0% |
| !!! | TTACAATTTTGACTTGTTAA+TGG | - | tig0026696:24614-24633 | Msa1430540:CDS | 20.0% |
| !! | GAGAGAGAATATAAAATTTA+AGG | + | tig0026696:24662-24681 | None:intergenic | 20.0% |
| !! | GGAATATATATAATGAAGAA+TGG | + | tig0026696:24890-24909 | None:intergenic | 20.0% |
| !!! | GGAATAAAATGTTTTGTAAA+AGG | + | tig0026696:24933-24952 | None:intergenic | 20.0% |
| !!! | TACAAAACATTTTATTCCAA+TGG | - | tig0026696:24935-24954 | Msa1430540:intron | 20.0% |
| !! | GTATTAATAAGGGAAATATT+TGG | + | tig0026696:25024-25043 | None:intergenic | 20.0% |
| !! | CCTATAAAGTGTATTAATAA+GGG | + | tig0026696:25034-25053 | None:intergenic | 20.0% |
| !! | TCCTATAAAGTGTATTAATA+AGG | + | tig0026696:25035-25054 | None:intergenic | 20.0% |
| !!! | GGAAGTAATAAAAACATTTT+TGG | + | tig0026696:25166-25185 | None:intergenic | 20.0% |
| !!! | TTTTCTAATAAATAATGGGT+AGG | - | tig0026696:25191-25210 | Msa1430540:intron | 20.0% |
| !!! | TTGATAGCAAAATATTTCAA+AGG | + | tig0026696:25539-25558 | None:intergenic | 20.0% |
| !!! | ATATTCCTAAACTCTATTTT+AGG | - | tig0026696:25744-25763 | Msa1430540:intron | 20.0% |
| !!! | TTTTAAGAAAAGTCTTCTAT+TGG | - | tig0026696:25802-25821 | Msa1430540:intron | 20.0% |
| !! | GTAAAAGAAAAAAAAAAGAG+GGG | + | tig0026696:26725-26744 | None:intergenic | 20.0% |
| !! | GAGTAAAAGAAAAAAAAAAG+AGG | + | tig0026696:26727-26746 | None:intergenic | 20.0% |
| !!! | TACAAGAGAAATTTTGAATT+TGG | - | tig0026696:26879-26898 | Msa1430540:five_prime_UTR | 20.0% |
| ! | TTGAAATTAAGATGGTGAAT+AGG | + | tig0026696:22746-22765 | None:intergenic | 25.0% |
| ! | ATGTATCAGTGAATTGATTA+GGG | + | tig0026696:22775-22794 | None:intergenic | 25.0% |
| ! | AATGTATCAGTGAATTGATT+AGG | + | tig0026696:22776-22795 | None:intergenic | 25.0% |
| !! | ATAGTTTCGTTTTCAAATCA+TGG | - | tig0026696:22821-22840 | Msa1430540:CDS | 25.0% |
| !! | TTAATTGTTTAAAACACGAG+TGG | - | tig0026696:23145-23164 | Msa1430540:CDS | 25.0% |
| ! | TTAAGCTATTTATCCAAACA+AGG | + | tig0026696:23227-23246 | None:intergenic | 25.0% |
| !! | GCAGTATATAAGTTCTAATA+AGG | - | tig0026696:23391-23410 | Msa1430540:CDS | 25.0% |
| !! | CCTTATTTGATCTTATTTAC+TGG | + | tig0026696:23430-23449 | None:intergenic | 25.0% |
| ! | CCAGTAAATAAGATCAAATA+AGG | - | tig0026696:23427-23446 | Msa1430540:CDS | 25.0% |
| ! | CTAACTAACCTATTAACTAA+GGG | + | tig0026696:23469-23488 | None:intergenic | 25.0% |
| ! | TCTAACTAACCTATTAACTA+AGG | + | tig0026696:23470-23489 | None:intergenic | 25.0% |
| ! | ATAACTCATCCCTATTTATA+GGG | + | tig0026696:23530-23549 | None:intergenic | 25.0% |
| ! | AATAACTCATCCCTATTTAT+AGG | + | tig0026696:23531-23550 | None:intergenic | 25.0% |
| ! | TTCAATCATAATATACCAGT+TGG | - | tig0026696:23630-23649 | Msa1430540:intron | 25.0% |
| ! | AGCAATCAATCAGAAAATAT+AGG | + | tig0026696:23668-23687 | None:intergenic | 25.0% |
| ! | TCATTGAACATAATTACACA+TGG | + | tig0026696:23994-24013 | None:intergenic | 25.0% |
| ! | AATTATGTTCAATGAATGCT+AGG | - | tig0026696:23999-24018 | Msa1430540:intron | 25.0% |
| ! | TTAAAACTGAACTAAAAGAC+GGG | + | tig0026696:24080-24099 | None:intergenic | 25.0% |
| !! | AAATGCAACTGTATACTTTT+TGG | - | tig0026696:24100-24119 | Msa1430540:intron | 25.0% |
| ! | GAAAATATGTTAGTTGAGTA+GGG | + | tig0026696:24197-24216 | None:intergenic | 25.0% |
| ! | AGAAAATATGTTAGTTGAGT+AGG | + | tig0026696:24198-24217 | None:intergenic | 25.0% |
| !! | TAACATATTTTCTCTGACAT+GGG | - | tig0026696:24205-24224 | Msa1430540:intron | 25.0% |
| ! | ATTTAAATTGAGTGGTTCTT+GGG | - | tig0026696:24353-24372 | Msa1430540:intron | 25.0% |
| !!! | TTGGGTATTTCAATGTTTTT+TGG | - | tig0026696:24371-24390 | Msa1430540:intron | 25.0% |
| !!! | TATTCAGTTTGTTCTAAAGT+TGG | - | tig0026696:24403-24422 | Msa1430540:intron | 25.0% |
| ! | TAAATAATGATTGCCAATTG+TGG | - | tig0026696:24528-24547 | Msa1430540:intron | 25.0% |
| ! | AAATAATGATTGCCAATTGT+GGG | - | tig0026696:24529-24548 | Msa1430540:intron | 25.0% |
| ! | ATATAAAATTTAAGGGATGC+AGG | + | tig0026696:24654-24673 | None:intergenic | 25.0% |
| ! | TATATTCTCTCTCATTCTTA+TGG | - | tig0026696:24669-24688 | Msa1430540:CDS | 25.0% |
| !! | TTGTAAAAGGCCTTATAATT+AGG | + | tig0026696:24920-24939 | None:intergenic | 25.0% |
| ! | CCCTTATTAATACACTTTAT+AGG | - | tig0026696:25031-25050 | Msa1430540:intron | 25.0% |
| !! | ATCATGGGTCTTATATATAT+GGG | + | tig0026696:25061-25080 | None:intergenic | 25.0% |
| !! | AATCATGGGTCTTATATATA+TGG | + | tig0026696:25062-25081 | None:intergenic | 25.0% |
| ! | CTTGTCGTATAGAATTAATT+TGG | - | tig0026696:25137-25156 | Msa1430540:intron | 25.0% |
| ! | GCAAAATATTTCAAAGGAAA+AGG | + | tig0026696:25533-25552 | None:intergenic | 25.0% |
| ! | ATGTGATGAAACTAGATAAA+TGG | - | tig0026696:25588-25607 | Msa1430540:CDS | 25.0% |
| ! | TTTAGTGCATCATTGAATTT+AGG | - | tig0026696:25659-25678 | Msa1430540:CDS | 25.0% |
| ! | TAACTTTATCCACATGAAAA+TGG | + | tig0026696:25772-25791 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGGTGAATT+GGG | + | tig0026696:26066-26085 | None:intergenic | 25.0% |
| !!! | ATGATTTTGATAAGGTGAAT+TGG | + | tig0026696:26067-26086 | None:intergenic | 25.0% |
| !!! | ATAAGTTGAATGATGTTTTC+AGG | - | tig0026696:26232-26251 | Msa1430540:intron | 25.0% |
| !!! | TAAGTTGAATGATGTTTTCA+GGG | - | tig0026696:26233-26252 | Msa1430540:intron | 25.0% |
| !! | AGACTTTTCTGATTTTTCAT+TGG | + | tig0026696:26562-26581 | None:intergenic | 25.0% |
| !!! | GCATTGTCATTTTTATCAAA+AGG | + | tig0026696:26796-26815 | None:intergenic | 25.0% |
| ! | GTTTAAGAATAATGTTACAG+AGG | + | tig0026696:26844-26863 | None:intergenic | 25.0% |
| AAAAATAACAAGTGACGTGT+TGG | - | tig0026696:22547-22566 | Msa1430540:three_prime_UTR | 30.0% | |
| TTTGATTGCTTTGACGAAAT+CGG | + | tig0026696:22708-22727 | None:intergenic | 30.0% | |
| ATTTCGTCAAAGCAATCAAA+AGG | - | tig0026696:22708-22727 | Msa1430540:three_prime_UTR | 30.0% | |
| ! | ATTAGCAAGAAAGTCTTGTA+CGG | + | tig0026696:22873-22892 | None:intergenic | 30.0% |
| ACAAGACTTTCTTGCTAATA+TGG | - | tig0026696:22874-22893 | Msa1430540:CDS | 30.0% | |
| !! | TTTGTTAATTAGGCCTTGTT+TGG | - | tig0026696:23211-23230 | Msa1430540:CDS | 30.0% |
| ! | ATCTTATTTACTGGTCTGTT+TGG | + | tig0026696:23421-23440 | None:intergenic | 30.0% |
| TAGCACTGTTTGTAATCAAA+GGG | - | tig0026696:23593-23612 | Msa1430540:intron | 30.0% | |
| ! | TCATCATGTTTTACATCATC+TGG | + | tig0026696:23773-23792 | None:intergenic | 30.0% |
| GTTTATTCGACCAGAAAATT+TGG | - | tig0026696:23826-23845 | Msa1430540:intron | 30.0% | |
| TTGATATTGCTACATTGGAT+TGG | + | tig0026696:24033-24052 | None:intergenic | 30.0% | |
| TGAGTTTGATATTGCTACAT+TGG | + | tig0026696:24038-24057 | None:intergenic | 30.0% | |
| ! | CTAACATATTTTCTCTGACA+TGG | - | tig0026696:24204-24223 | Msa1430540:intron | 30.0% |
| AAATGTTGACAGAAAACGAA+TGG | + | tig0026696:24322-24341 | None:intergenic | 30.0% | |
| CCACTCAATTTAAATGCATT+TGG | + | tig0026696:24348-24367 | None:intergenic | 30.0% | |
| CCAAATGCATTTAAATTGAG+TGG | - | tig0026696:24345-24364 | Msa1430540:intron | 30.0% | |
| CATTTAAATTGAGTGGTTCT+TGG | - | tig0026696:24352-24371 | Msa1430540:intron | 30.0% | |
| !! | AGTTTGTTCTAAAGTTGGAT+AGG | - | tig0026696:24408-24427 | Msa1430540:intron | 30.0% |
| ! | ATTGATTCTTAGGAAAAGCT+TGG | + | tig0026696:24450-24469 | None:intergenic | 30.0% |
| AAGTGCTAGAAAAATTCTTC+TGG | - | tig0026696:24555-24574 | Msa1430540:intron | 30.0% | |
| !!! | TGGAGTTGTCTTTTTTATGA+AGG | - | tig0026696:24575-24594 | Msa1430540:CDS | 30.0% |
| !!! | TGTCTTTTTTATGAAGGCTT+TGG | - | tig0026696:24581-24600 | Msa1430540:CDS | 30.0% |
| ATACAAGTAAGTTTGTCTCT+TGG | + | tig0026696:24743-24762 | None:intergenic | 30.0% | |
| TTGTATTCTAAACTGTTGCA+AGG | - | tig0026696:24757-24776 | Msa1430540:intron | 30.0% | |
| ! | AAAGGCCTTATAATTAGGAA+CGG | + | tig0026696:24915-24934 | None:intergenic | 30.0% |
| TGCATCTACAAATTTGTAGA+GGG | + | tig0026696:24988-25007 | None:intergenic | 30.0% | |
| ATGCATCTACAAATTTGTAG+AGG | + | tig0026696:24989-25008 | None:intergenic | 30.0% | |
| ! | TAAGACCCATGATTTTTGTT+AGG | - | tig0026696:25068-25087 | Msa1430540:intron | 30.0% |
| GACATCCTAACAAAAATCAT+GGG | + | tig0026696:25076-25095 | None:intergenic | 30.0% | |
| ! | AGTAAAAGTATGGGAATGAT+AGG | + | tig0026696:25240-25259 | None:intergenic | 30.0% |
| ! | AAGTGGCAAAGTAAAAGTAT+GGG | + | tig0026696:25249-25268 | None:intergenic | 30.0% |
| AAAGTGGCAAAGTAAAAGTA+TGG | + | tig0026696:25250-25269 | None:intergenic | 30.0% | |
| TACTGAAAAACAAAGCAAAG+TGG | + | tig0026696:25266-25285 | None:intergenic | 30.0% | |
| ! | GCAAACTTTATTTGTACAAG+TGG | + | tig0026696:25297-25316 | None:intergenic | 30.0% |
| AAATATCATCTTGCAAACAC+TGG | - | tig0026696:25387-25406 | Msa1430540:intron | 30.0% | |
| ATGCATATTTGTGGGTAATA+TGG | + | tig0026696:25432-25451 | None:intergenic | 30.0% | |
| ! | AATGTCTTTTGAACTTCTCA+TGG | - | tig0026696:25497-25516 | Msa1430540:intron | 30.0% |
| CAAATCTACTGTACATACAA+AGG | - | tig0026696:25860-25879 | Msa1430540:intron | 30.0% | |
| ! | AATGTTTGAGATGAAGGATT+CGG | + | tig0026696:25947-25966 | None:intergenic | 30.0% |
| !! | TGCTGTACATGATTTTGATA+AGG | + | tig0026696:26075-26094 | None:intergenic | 30.0% |
| ! | TCTAATTTTGCATCAGATGA+TGG | + | tig0026696:26114-26133 | None:intergenic | 30.0% |
| TCTCAGATTTGGAGAATAAA+GGG | - | tig0026696:26187-26206 | Msa1430540:intron | 30.0% | |
| ATCGTTTGTAATTCTTTAGC+AGG | + | tig0026696:26314-26333 | None:intergenic | 30.0% | |
| ATTGTCTGAAGAATCTATTG+TGG | + | tig0026696:26526-26545 | None:intergenic | 30.0% | |
| ACAATAGATTCTTCAGACAA+TGG | - | tig0026696:26525-26544 | Msa1430540:CDS | 30.0% | |
| !!! | CTGAATCACTTTTTTTCTCA+GGG | + | tig0026696:26611-26630 | None:intergenic | 30.0% |
| ! | GAAAAAAAGTGATTCAGGTT+TGG | - | tig0026696:26614-26633 | Msa1430540:intron | 30.0% |
| TAGTTCTTATAGGTTATGAG+GGG | + | tig0026696:26674-26693 | None:intergenic | 30.0% | |
| ! | CTAGTTCTTATAGGTTATGA+GGG | + | tig0026696:26675-26694 | None:intergenic | 30.0% |
| ! | CTATTGTAGCTAGTTCTTAT+AGG | + | tig0026696:26684-26703 | None:intergenic | 30.0% |
| ! | AAAAAAGAGGGGTATATGAT+GGG | + | tig0026696:26714-26733 | None:intergenic | 30.0% |
| ! | AAAAAAAGAGGGGTATATGA+TGG | + | tig0026696:26715-26734 | None:intergenic | 30.0% |
| AGTTTACACAGACAGTGTAA+TGG | - | tig0026696:22619-22638 | Msa1430540:three_prime_UTR | 35.0% | |
| TTAAGATGGTGAATAGGAGA+AGG | + | tig0026696:22740-22759 | None:intergenic | 35.0% | |
| GGTTCGGATTGAAATTAAGA+TGG | + | tig0026696:22754-22773 | None:intergenic | 35.0% | |
| TCAGTGAATTGATTAGGGTT+CGG | + | tig0026696:22770-22789 | None:intergenic | 35.0% | |
| ! | TAATATGGAAGCTGCTTTCA+AGG | - | tig0026696:22889-22908 | Msa1430540:CDS | 35.0% |
| ! | CTACATCTACATTGCAGTTT+TGG | - | tig0026696:23113-23132 | Msa1430540:CDS | 35.0% |
| !! | CATTGCAGTTTTGGCAATAA+TGG | - | tig0026696:23122-23141 | Msa1430540:CDS | 35.0% |
| AATCACTTATGAGACTGTCT+GGG | + | tig0026696:23368-23387 | None:intergenic | 35.0% | |
| TAATCACTTATGAGACTGTC+TGG | + | tig0026696:23369-23388 | None:intergenic | 35.0% | |
| ACTAACCTATTAACTAAGGG+TGG | + | tig0026696:23466-23485 | None:intergenic | 35.0% | |
| AAAGATAGTTAGGCCAAACA+AGG | - | tig0026696:23498-23517 | Msa1430540:CDS | 35.0% | |
| ATAGGGATGAGTTATTAGTG+AGG | - | tig0026696:23535-23554 | Msa1430540:CDS | 35.0% | |
| TAGGGATGAGTTATTAGTGA+GGG | - | tig0026696:23536-23555 | Msa1430540:CDS | 35.0% | |
| CTAGCACTGTTTGTAATCAA+AGG | - | tig0026696:23592-23611 | Msa1430540:intron | 35.0% | |
| AGCACTGTTTGTAATCAAAG+GGG | - | tig0026696:23594-23613 | Msa1430540:intron | 35.0% | |
| TGAACAACTTTCAGAGAAGA+TGG | - | tig0026696:23790-23809 | Msa1430540:intron | 35.0% | |
| !! | CATGATGTTTCGTTCTGAAA+TGG | + | tig0026696:23863-23882 | None:intergenic | 35.0% |
| CATTTCAGAACGAAACATCA+TGG | - | tig0026696:23861-23880 | Msa1430540:intron | 35.0% | |
| TTCTCCGTGTTACACATTAT+AGG | - | tig0026696:24294-24313 | Msa1430540:intron | 35.0% | |
| GGTACCTATAATGTGTAACA+CGG | + | tig0026696:24301-24320 | None:intergenic | 35.0% | |
| ! | TTTTCAATTTGATGCACCAC+TGG | - | tig0026696:24478-24497 | Msa1430540:intron | 35.0% |
| TTTCAATTTGATGCACCACT+GGG | - | tig0026696:24479-24498 | Msa1430540:intron | 35.0% | |
| ACAGAAGATCAACATGTACA+AGG | - | tig0026696:24715-24734 | Msa1430540:CDS | 35.0% | |
| CTAAACTGTTGCAAGGTTAT+TGG | - | tig0026696:24764-24783 | Msa1430540:intron | 35.0% | |
| GCTAATCTATGTTACCCTAA+AGG | - | tig0026696:24856-24875 | Msa1430540:intron | 35.0% | |
| GAATGGAGTTTGTACCTTTA+GGG | + | tig0026696:24873-24892 | None:intergenic | 35.0% | |
| AGAATGGAGTTTGTACCTTT+AGG | + | tig0026696:24874-24893 | None:intergenic | 35.0% | |
| ! | TGTAGAGGGTCTTATATCTA+GGG | + | tig0026696:24974-24993 | None:intergenic | 35.0% |
| ! | TTGTAGAGGGTCTTATATCT+AGG | + | tig0026696:24975-24994 | None:intergenic | 35.0% |
| GGACATCCTAACAAAAATCA+TGG | + | tig0026696:25077-25096 | None:intergenic | 35.0% | |
| TGTTAGGATGTCCTATAAAG+AGG | - | tig0026696:25084-25103 | Msa1430540:intron | 35.0% | |
| GTTAGGATGTCCTATAAAGA+GGG | - | tig0026696:25085-25104 | Msa1430540:intron | 35.0% | |
| GTAGGACTTACGAATATGTA+GGG | - | tig0026696:25209-25228 | Msa1430540:intron | 35.0% | |
| ! | TCATGTGACTTTTGTACAAC+AGG | - | tig0026696:25342-25361 | Msa1430540:intron | 35.0% |
| TACAACAGGACAATGTTCAA+CGG | - | tig0026696:25356-25375 | Msa1430540:intron | 35.0% | |
| TATGGTTATGCTGTGATGAA+TGG | + | tig0026696:25414-25433 | None:intergenic | 35.0% | |
| TGGCACCTAAAATAGAGTTT+AGG | + | tig0026696:25752-25771 | None:intergenic | 35.0% | |
| !!! | TTTTAGGTGCCATTTTCATG+TGG | - | tig0026696:25760-25779 | Msa1430540:intron | 35.0% |
| ! | TTCTATTGGTGATACTATGC+AGG | - | tig0026696:25816-25835 | Msa1430540:intron | 35.0% |
| ! | TGCATCAATGTTTGAGATGA+AGG | + | tig0026696:25953-25972 | None:intergenic | 35.0% |
| AACTGAGTTTGAGAGAAACA+TGG | - | tig0026696:25993-26012 | Msa1430540:intron | 35.0% | |
| CTCTCAGATTTGGAGAATAA+AGG | - | tig0026696:26186-26205 | Msa1430540:intron | 35.0% | |
| CTCAGATTTGGAGAATAAAG+GGG | - | tig0026696:26188-26207 | Msa1430540:intron | 35.0% | |
| AGGGGCAAGTATGATAATTA+AGG | - | tig0026696:26206-26225 | Msa1430540:intron | 35.0% | |
| GGCAAGTATGATAATTAAGG+AGG | - | tig0026696:26209-26228 | Msa1430540:intron | 35.0% | |
| CCTACACTAGCAAACATATA+TGG | + | tig0026696:26264-26283 | None:intergenic | 35.0% | |
| ! | CCATATATGTTTGCTAGTGT+AGG | - | tig0026696:26261-26280 | Msa1430540:intron | 35.0% |
| TTTGGAAAGACACACATACT+TGG | + | tig0026696:26343-26362 | None:intergenic | 35.0% | |
| AAGTATGTGTGTCTTTCCAA+AGG | - | tig0026696:26342-26361 | Msa1430540:intron | 35.0% | |
| ! | GCATTAATTTGAGGATTGGA+TGG | + | tig0026696:26396-26415 | None:intergenic | 35.0% |
| ! | CTGAGCATTAATTTGAGGAT+TGG | + | tig0026696:26400-26419 | None:intergenic | 35.0% |
| !!! | GCATTATTTTGAGGATTGGA+TGG | + | tig0026696:26480-26499 | None:intergenic | 35.0% |
| !!! | CTGAGCATTATTTTGAGGAT+TGG | + | tig0026696:26484-26503 | None:intergenic | 35.0% |
| CAATCCTCAAAATAATGCTC+AGG | - | tig0026696:26482-26501 | Msa1430540:intron | 35.0% | |
| ! | GATTTTTCATTGGAAGCTAC+AGG | + | tig0026696:26552-26571 | None:intergenic | 35.0% |
| !!! | CCTGAATCACTTTTTTTCTC+AGG | + | tig0026696:26612-26631 | None:intergenic | 35.0% |
| CCTGAGAAAAAAAGTGATTC+AGG | - | tig0026696:26609-26628 | Msa1430540:CDS | 35.0% | |
| AGTTCTTATAGGTTATGAGG+GGG | + | tig0026696:26673-26692 | None:intergenic | 35.0% | |
| ! | GCTAGTTCTTATAGGTTATG+AGG | + | tig0026696:26676-26695 | None:intergenic | 35.0% |
| ! | ATTTTAGATTTCCCCTTGTG+TGG | - | tig0026696:26763-26782 | Msa1430540:CDS | 35.0% |
| ACACTGTCTGTGTAAACTGT+TGG | + | tig0026696:22617-22636 | None:intergenic | 40.0% | |
| TTTCAAGGCTCATCCTCTTT+GGG | - | tig0026696:22904-22923 | Msa1430540:CDS | 40.0% | |
| ACGGAAGAAACTAACTTCAC+CGG | + | tig0026696:22960-22979 | None:intergenic | 40.0% | |
| ACAGTCCACCCTTAGTTAAT+AGG | - | tig0026696:23458-23477 | Msa1430540:CDS | 40.0% | |
| ! | GAGAGCGTGTAAAGATAGTT+AGG | - | tig0026696:23488-23507 | Msa1430540:CDS | 40.0% |
| AAGGCATGCTCCCTATAAAT+AGG | - | tig0026696:23517-23536 | Msa1430540:CDS | 40.0% | |
| AGGCATGCTCCCTATAAATA+GGG | - | tig0026696:23518-23537 | Msa1430540:CDS | 40.0% | |
| AGGGATGAGTTATTAGTGAG+GGG | - | tig0026696:23537-23556 | Msa1430540:CDS | 40.0% | |
| TGAGGGGATTATCTTGTCAT+TGG | - | tig0026696:23553-23572 | Msa1430540:CDS | 40.0% | |
| GAGGGGATTATCTTGTCATT+GGG | - | tig0026696:23554-23573 | Msa1430540:CDS | 40.0% | |
| AAACAGTGCTAGCACTTCAA+GGG | + | tig0026696:23584-23603 | None:intergenic | 40.0% | |
| AGGAAACTGATAGAACCAAC+TGG | + | tig0026696:23648-23667 | None:intergenic | 40.0% | |
| TGATTGATTGCTCTTACCTC+TGG | - | tig0026696:23676-23695 | Msa1430540:intron | 40.0% | |
| GATTGATTGCTCTTACCTCT+GGG | - | tig0026696:23677-23696 | Msa1430540:intron | 40.0% | |
| TGTACATGATCAAAACCCAG+AGG | + | tig0026696:23695-23714 | None:intergenic | 40.0% | |
| !! | TCTGGGTTTTGATCATGTAC+AGG | - | tig0026696:23694-23713 | Msa1430540:intron | 40.0% |
| !! | CTGGGTTTTGATCATGTACA+GGG | - | tig0026696:23695-23714 | Msa1430540:intron | 40.0% |
| TGGAACTGAAGCAAATACAC+GGG | + | tig0026696:23753-23772 | None:intergenic | 40.0% | |
| CTGGAACTGAAGCAAATACA+CGG | + | tig0026696:23754-23773 | None:intergenic | 40.0% | |
| ! | GGCTTGATGTCCAAATTTTC+TGG | + | tig0026696:23839-23858 | None:intergenic | 40.0% |
| !! | GATGTTTCGTTCTGAAATGG+TGG | + | tig0026696:23860-23879 | None:intergenic | 40.0% |
| TCAGAACGAAACATCATGGT+TGG | - | tig0026696:23865-23884 | Msa1430540:intron | 40.0% | |
| AACTTTGGTCGCTAGTTAGT+TGG | + | tig0026696:24138-24157 | None:intergenic | 40.0% | |
| AGGAAGAAATTCATCAGCTC+CGG | + | tig0026696:24834-24853 | None:intergenic | 40.0% | |
| AGGGTAACATAGATTAGCAC+AGG | + | tig0026696:24854-24873 | None:intergenic | 40.0% | |
| TCCCTCCGTTCCTAATTATA+AGG | - | tig0026696:24907-24926 | Msa1430540:intron | 40.0% | |
| GCCTTATAATTAGGAACGGA+GGG | + | tig0026696:24911-24930 | None:intergenic | 40.0% | |
| GGGACAAAACTTTAGACCAT+TGG | + | tig0026696:24954-24973 | None:intergenic | 40.0% | |
| GGTAGGACTTACGAATATGT+AGG | - | tig0026696:25208-25227 | Msa1430540:intron | 40.0% | |
| ACAACAGGACAATGTTCAAC+GGG | - | tig0026696:25357-25376 | Msa1430540:intron | 40.0% | |
| AGTAGATTTGAGTGCAGTTG+TGG | + | tig0026696:25850-25869 | None:intergenic | 40.0% | |
| ! | TGATGCAAATGCCATTTCGA+TGG | - | tig0026696:25966-25985 | Msa1430540:intron | 40.0% |
| CTCAGTTTCATCCATCGAAA+TGG | + | tig0026696:25980-25999 | None:intergenic | 40.0% | |
| AGTTCCATCACTCTCAGATT+TGG | - | tig0026696:26176-26195 | Msa1430540:intron | 40.0% | |
| TTCTCCAAATCTGAGAGTGA+TGG | + | tig0026696:26183-26202 | None:intergenic | 40.0% | |
| TGTGTGTCTTTCCAAAGGAT+TGG | - | tig0026696:26347-26366 | Msa1430540:intron | 40.0% | |
| GTGTGTCTTTCCAAAGGATT+GGG | - | tig0026696:26348-26367 | Msa1430540:intron | 40.0% | |
| TCCTCAAATTAATGCTCAGC+AGG | - | tig0026696:26401-26420 | Msa1430540:intron | 40.0% | |
| ! | TCCTGCTGAGCATTAATTTG+AGG | + | tig0026696:26405-26424 | None:intergenic | 40.0% |
| ATGTTGAAACCCTTTCCAGA+GGG | - | tig0026696:26427-26446 | Msa1430540:intron | 40.0% | |
| !! | TGGTCCTGAGCATTATTTTG+AGG | + | tig0026696:26489-26508 | None:intergenic | 40.0% |
| TTGTGGTCTCACTCTTAACA+TGG | + | tig0026696:26509-26528 | None:intergenic | 40.0% | |
| AAAGTCTCCTGATACATCAG+AGG | - | tig0026696:26575-26594 | Msa1430540:CDS | 40.0% | |
| GAGTTATCCTCTGATGTATC+AGG | + | tig0026696:26585-26604 | None:intergenic | 40.0% | |
| AAAGGACAGTTACCACACAA+GGG | + | tig0026696:26778-26797 | None:intergenic | 40.0% | |
| AAAAGGACAGTTACCACACA+AGG | + | tig0026696:26779-26798 | None:intergenic | 40.0% | |
| !! | TGACATAGTGATAGTGGTCA+TGG | + | tig0026696:26818-26837 | None:intergenic | 40.0% |
| AGGAGATGACATAGTGATAG+TGG | + | tig0026696:26824-26843 | None:intergenic | 40.0% | |
| AAGGAAGTCGTGTAAACCAG+AGG | + | tig0026696:22660-22679 | None:intergenic | 45.0% | |
| GATTGCTTTGACGAAATCGG+CGG | + | tig0026696:22705-22724 | None:intergenic | 45.0% | |
| GATGGTGAATAGGAGAAGGA+AGG | + | tig0026696:22736-22755 | None:intergenic | 45.0% | |
| CTTTCAAGGCTCATCCTCTT+TGG | - | tig0026696:22903-22922 | Msa1430540:CDS | 45.0% | |
| ! | GATGATGAACTCGAAAGTGC+CGG | - | tig0026696:22938-22957 | Msa1430540:CDS | 45.0% |
| ! | TATAGGGAGCATGCCTTGTT+TGG | + | tig0026696:23514-23533 | None:intergenic | 45.0% |
| CAAACAGTGCTAGCACTTCA+AGG | + | tig0026696:23585-23604 | None:intergenic | 45.0% | |
| GGAACTGAAGCAAATACACG+GGG | + | tig0026696:23752-23771 | None:intergenic | 45.0% | |
| GTCGCTAGTTAGTTGGCATT+GGG | + | tig0026696:24131-24150 | None:intergenic | 45.0% | |
| TGTGTAACACGGAGAAAGCA+TGG | + | tig0026696:24290-24309 | None:intergenic | 45.0% | |
| GCTTCCAAAGATAATCCTCC+CGG | - | tig0026696:24812-24831 | Msa1430540:intron | 45.0% | |
| GGAAGAAATTCATCAGCTCC+GGG | + | tig0026696:24833-24852 | None:intergenic | 45.0% | |
| ! | GGCCTTATAATTAGGAACGG+AGG | + | tig0026696:24912-24931 | None:intergenic | 45.0% |
| AGGATGTCCTATAAAGAGGG+TGG | - | tig0026696:25088-25107 | Msa1430540:intron | 45.0% | |
| GGATGTCCTATAAAGAGGGT+GGG | - | tig0026696:25089-25108 | Msa1430540:intron | 45.0% | |
| AGTCTCACAGTCACATACGT+AGG | + | tig0026696:25617-25636 | None:intergenic | 45.0% | |
| GATTTGAGTGCAGTTGTGGA+GGG | + | tig0026696:25846-25865 | None:intergenic | 45.0% | |
| AGATTTGAGTGCAGTTGTGG+AGG | + | tig0026696:25847-25866 | None:intergenic | 45.0% | |
| GTTTAGACGCCAATCTCGTT+TGG | - | tig0026696:25882-25901 | Msa1430540:intron | 45.0% | |
| TTTGCTCGTGCTCTTCTTTC+AGG | - | tig0026696:26018-26037 | Msa1430540:intron | 45.0% | |
| TTGCTCGTGCTCTTCTTTCA+GGG | - | tig0026696:26019-26038 | Msa1430540:intron | 45.0% | |
| AGAAGAGACACCCAATCCTT+TGG | + | tig0026696:26361-26380 | None:intergenic | 45.0% | |
| ! | CTCTGGAAAGGGTTTCAACA+TGG | + | tig0026696:26428-26447 | None:intergenic | 45.0% |
| CATGTTGAAACCCTTTCCAG+AGG | - | tig0026696:26426-26445 | Msa1430540:intron | 45.0% | |
| AACATGAGATGAAGAGGAGG+AGG | + | tig0026696:26457-26476 | None:intergenic | 45.0% | |
| TGGAACATGAGATGAAGAGG+AGG | + | tig0026696:26460-26479 | None:intergenic | 45.0% | |
| GGATGGAACATGAGATGAAG+AGG | + | tig0026696:26463-26482 | None:intergenic | 45.0% | |
| ! | AAGTGATTCAGGTTTGGCAC+AGG | - | tig0026696:26620-26639 | Msa1430540:intron | 45.0% |
| AAGGACAGTTACCACACAAG+GGG | + | tig0026696:26777-26796 | None:intergenic | 45.0% | |
| !! | AAATTTAAATTATAAGAATA+GGG | + | tig0026696:24247-24266 | None:intergenic | 5.0% |
| !! | TAAATTTAAATTATAAGAAT+AGG | + | tig0026696:24248-24267 | None:intergenic | 5.0% |
| ! | GTGTAAACCAGAGGAAGCGT+CGG | + | tig0026696:22651-22670 | None:intergenic | 50.0% |
| TCACTGTCTCTCTCAGGATC+GGG | + | tig0026696:22848-22867 | None:intergenic | 50.0% | |
| GTCACTGTCTCTCTCAGGAT+CGG | + | tig0026696:22849-22868 | None:intergenic | 50.0% | |
| GGTCGCTAGTTAGTTGGCAT+TGG | + | tig0026696:24132-24151 | None:intergenic | 50.0% | |
| TGTGGCTAATGAGAACCCAG+TGG | + | tig0026696:24497-24516 | None:intergenic | 50.0% | |
| CTAGCACTTCGTCCCACAAT+TGG | + | tig0026696:24544-24563 | None:intergenic | 50.0% | |
| AGCTCCGGGAGGATTATCTT+TGG | + | tig0026696:24819-24838 | None:intergenic | 50.0% | |
| AGAAATTCATCAGCTCCGGG+AGG | + | tig0026696:24830-24849 | None:intergenic | 50.0% | |
| TGTCCTATAAAGAGGGTGGG+AGG | - | tig0026696:25092-25111 | Msa1430540:intron | 50.0% | |
| GTCCTATAAAGAGGGTGGGA+GGG | - | tig0026696:25093-25112 | Msa1430540:intron | 50.0% | |
| AGACGCCAATCTCGTTTGGT+TGG | - | tig0026696:25886-25905 | Msa1430540:intron | 50.0% | |
| GACGCCAATCTCGTTTGGTT+GGG | - | tig0026696:25887-25906 | Msa1430540:intron | 50.0% | |
| ACGCCAATCTCGTTTGGTTG+GGG | - | tig0026696:25888-25907 | Msa1430540:intron | 50.0% | |
| CTTCCCCAACCAAACGAGAT+TGG | + | tig0026696:25894-25913 | None:intergenic | 50.0% | |
| ! | TTCAGGTTTGGCACAGGATG+AGG | - | tig0026696:26626-26645 | Msa1430540:intron | 50.0% |
| TTTGACGAAATCGGCGGCAG+CGG | + | tig0026696:22699-22718 | None:intergenic | 55.0% | |
| AAGGCTCATCCTCTTTGGGC+TGG | - | tig0026696:22908-22927 | Msa1430540:CDS | 55.0% | |
| TCAGAGCAACCAGCCCAAAG+AGG | + | tig0026696:22920-22939 | None:intergenic | 55.0% | |
| CTCCCTCCCACCCTCTTTAT+AGG | + | tig0026696:25098-25117 | None:intergenic | 55.0% | |
| ! | GGAGGCTAACCCTCTGGAAA+GGG | + | tig0026696:26439-26458 | None:intergenic | 55.0% |
| ! | AGGAGGCTAACCCTCTGGAA+AGG | + | tig0026696:26440-26459 | None:intergenic | 55.0% |
| GATCGCTCGCGTCACTGTGT+CGG | - | tig0026696:22569-22588 | Msa1430540:three_prime_UTR | 60.0% | |
| GAAAACGCCGACGCTTCCTC+TGG | - | tig0026696:22641-22660 | Msa1430540:three_prime_UTR | 60.0% | |
| TTGACGAAATCGGCGGCAGC+GGG | + | tig0026696:22698-22717 | None:intergenic | 60.0% | |
| ACGGCGTCACTGTCTCTCTC+AGG | + | tig0026696:22854-22873 | None:intergenic | 60.0% | |
| AGAGGAGGAGGCTAACCCTC+TGG | + | tig0026696:26445-26464 | None:intergenic | 60.0% | |
| GATGAGGCAGCTGCACCAGA+GGG | - | tig0026696:26642-26661 | Msa1430540:intron | 60.0% | |
| ! | CGGGTTGACGCATGCGCTCA+AGG | + | tig0026696:22679-22698 | None:intergenic | 65.0% |
| GGATGAGGCAGCTGCACCAG+AGG | - | tig0026696:26641-26660 | Msa1430540:intron | 65.0% | |
| !! | TATGAGGGGGCACCACCCTC+TGG | + | tig0026696:26660-26679 | None:intergenic | 65.0% |
| GAGGCAGCTGCACCAGAGGG+TGG | - | tig0026696:26645-26664 | Msa1430540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026696 | gene | 22543 | 26904 | 22543 | ID=Msa1430540;Name=Msa1430540 |
| tig0026696 | mRNA | 22543 | 26904 | 22543 | ID=Msa1430540-mRNA-1;Parent=Msa1430540;Name=Msa1430540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=95|1|1|1|1|1|5|224|477 |
| tig0026696 | exon | 22543 | 23609 | 22543 | ID=Msa1430540-mRNA-1:exon:7067;Parent=Msa1430540-mRNA-1 |
| tig0026696 | exon | 24570 | 24749 | 24570 | ID=Msa1430540-mRNA-1:exon:7066;Parent=Msa1430540-mRNA-1 |
| tig0026696 | exon | 25561 | 25731 | 25561 | ID=Msa1430540-mRNA-1:exon:7065;Parent=Msa1430540-mRNA-1 |
| tig0026696 | exon | 26483 | 26630 | 26483 | ID=Msa1430540-mRNA-1:exon:7064;Parent=Msa1430540-mRNA-1 |
| tig0026696 | exon | 26718 | 26904 | 26718 | ID=Msa1430540-mRNA-1:exon:7063;Parent=Msa1430540-mRNA-1 |
| tig0026696 | five_prime_UTR | 26810 | 26904 | 26810 | ID=Msa1430540-mRNA-1:five_prime_utr;Parent=Msa1430540-mRNA-1 |
| tig0026696 | CDS | 26718 | 26809 | 26718 | ID=Msa1430540-mRNA-1:cds;Parent=Msa1430540-mRNA-1 |
| tig0026696 | CDS | 26483 | 26630 | 26483 | ID=Msa1430540-mRNA-1:cds;Parent=Msa1430540-mRNA-1 |
| tig0026696 | CDS | 25561 | 25731 | 25561 | ID=Msa1430540-mRNA-1:cds;Parent=Msa1430540-mRNA-1 |
| tig0026696 | CDS | 24570 | 24749 | 24570 | ID=Msa1430540-mRNA-1:cds;Parent=Msa1430540-mRNA-1 |
| tig0026696 | CDS | 22767 | 23609 | 22767 | ID=Msa1430540-mRNA-1:cds;Parent=Msa1430540-mRNA-1 |
| tig0026696 | three_prime_UTR | 22543 | 22766 | 22543 | ID=Msa1430540-mRNA-1:three_prime_utr;Parent=Msa1430540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
