AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093680 MtrunA17_Chr7g0273611 92.627 434 21 1 2 435 83 505 0.0 734
Msa0093680 MtrunA17_Chr2g0326721 56.604 106 40 1 2 107 83 182 2.74e-30 121
Msa0093680 MtrunA17_Chr4g0029001 56.604 106 40 1 2 107 83 182 1.29e-29 120
Msa0093680 MtrunA17_Chr6g0456181 50.000 72 36 0 1 72 45 116 2.16e-13 66.6
Msa0093680 MtrunA17_Chr6g0461131 42.857 91 49 2 6 95 237 325 5.67e-13 70.9
Msa0093680 MtrunA17_Chr3g0118941 30.476 105 73 0 1 105 175 279 7.06e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093680 AT3G26932.3 56.757 111 36 1 1 111 24 122 4.68e-36 135
Msa0093680 AT3G26932.1 57.273 110 35 1 2 111 83 180 2.62e-35 134
Msa0093680 AT3G26932.2 57.273 110 35 1 2 111 83 180 2.62e-35 134
Msa0093680 AT5G41070.1 56.364 110 35 1 2 111 83 179 2.08e-34 132
Msa0093680 AT2G28380.1 60.377 106 36 2 2 107 83 182 9.85e-30 120
Msa0093680 AT3G62800.3 46.154 78 42 0 7 84 83 160 2.74e-13 70.9
Msa0093680 AT3G62800.2 46.154 78 42 0 7 84 83 160 3.16e-13 71.2
Msa0093680 AT3G62800.1 46.154 78 42 0 7 84 83 160 3.16e-13 71.2

Find 139 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGACCTCATTTGTCTT+TGG 0.147030 1_2:-76508654 None:intergenic
AAGGCAACCAACATATTATT+TGG 0.205227 1_2:-76508782 None:intergenic
TTGACCTACCCGTGTTTAAC+TGG 0.206547 1_2:-76508073 None:intergenic
TTGAGACCTCATTTGTCTTT+GGG 0.235703 1_2:-76508653 None:intergenic
TCGAACTACTACTATAATTT+AGG 0.260524 1_2:-76508948 None:intergenic
TTCTTCTTGTATCTCTCTAA+TGG 0.261124 1_2:-76508102 None:intergenic
ATTTGGTTTGAATAGTAAAA+TGG 0.270405 1_2:-76508044 None:intergenic
GACTGAACCTTCCTGTTTAT+AGG 0.281729 1_2:+76507222 Msa0093680:CDS
TATTGTACTGTTGAGATTGC+TGG 0.288844 1_2:+76507281 Msa0093680:CDS
TGCGGAGCGGGTGGAATAAT+TGG 0.307104 1_2:-76507906 None:intergenic
TCAACAGTACAATAGAAGTT+AGG 0.331503 1_2:-76507272 None:intergenic
CTCTAATTTCTCGCACGAAT+TGG 0.340209 1_2:+76507821 Msa0093680:CDS
AGTATACAAGAATTTGCTTC+AGG 0.357086 1_2:+76507181 Msa0093680:CDS
CATTGCTAAAGTTGCAAACT+TGG 0.359333 1_2:-76508139 None:intergenic
TGATTCTGTCTCACATTCTC+TGG 0.366241 1_2:-76508185 None:intergenic
CTATGTTGATGATCACATTC+TGG 0.371431 1_2:-76507714 None:intergenic
AATGATGATAACTCTTTAGA+TGG 0.371804 1_2:-76507981 None:intergenic
CAGTAGTAGTAGAAATGAAC+TGG 0.377944 1_2:+76508223 Msa0093680:CDS
AACTGGGGTCCTACAAAATC+CGG 0.380281 1_2:+76508493 Msa0093680:CDS
GCCTACTCCTCGATTCAATA+TGG 0.389139 1_2:+76508529 Msa0093680:CDS
AGAGATCCCACCGATTTAAT+CGG 0.396276 1_2:+76508859 Msa0093680:three_prime_UTR
CCGTCCAAAAGCAATGAAAA+AGG 0.400134 1_2:+76508620 Msa0093680:CDS
GAATAGTAAAATGGAGGCCT+TGG 0.407381 1_2:-76508035 None:intergenic
GTTGCTCCAAGGTTGAGAAC+TGG 0.408470 1_2:+76508476 Msa0093680:CDS
GGTGTAGCAATAGAGAAATT+TGG 0.411272 1_2:-76508014 None:intergenic
ATAGAGAAATTTGGTCCTAC+AGG 0.412475 1_2:-76508005 None:intergenic
AAATAATATGTTGGTTGCCT+TGG 0.414003 1_2:+76508784 Msa0093680:three_prime_UTR
GGATGTTTACAGGATGAAAC+AGG 0.422757 1_2:+76507158 None:intergenic
TTGCTCCAAGGTTGAGAACT+GGG 0.423892 1_2:+76508477 Msa0093680:CDS
GTGTCAACCCAGCCAGCTCC+AGG 0.433500 1_2:+76507765 Msa0093680:CDS
TTTATATTTGAGAATTAAGA+AGG 0.434846 1_2:-76508696 None:intergenic
TGTCTCACATTCTCTGGAGC+TGG 0.440216 1_2:-76508179 None:intergenic
GCACGAATAGTCCTATAAAC+AGG 0.449589 1_2:-76507233 None:intergenic
CATTCTCTGGAGCTGGTGGT+TGG 0.452128 1_2:-76508172 None:intergenic
ATTCCCACACCCGATTAAAT+CGG 0.453495 1_2:-76508869 None:intergenic
AACCTTGGAGCAACAGCAAT+AGG 0.454403 1_2:-76508467 None:intergenic
TGAATGTGCTATGGCAATCC+TGG 0.459015 1_2:-76508336 None:intergenic
ACAAATTATGCAGCAAATGA+TGG 0.462694 1_2:+76507869 Msa0093680:CDS
GGATCTCTTGTCAAAGTTGG+AGG 0.463833 1_2:-76508844 None:intergenic
GGGTGGAATAATTGGTTGAA+TGG 0.464890 1_2:-76507898 None:intergenic
AATACATCCCTGGAGCTGGC+TGG 0.469048 1_2:-76507773 None:intergenic
TGACCTACCCGTGTTTAACT+GGG 0.470649 1_2:-76508072 None:intergenic
CAGGAAACTGCCCACAGAGC+TGG 0.473496 1_2:+76507200 Msa0093680:CDS
CTCGGAGGAGCTGAGCAGAC+TGG 0.473989 1_2:-76508581 None:intergenic
AAGAACATGTTATTATTGCT+CGG 0.478984 1_2:+76507652 Msa0093680:CDS
TGGATCACAGAATGCATTAG+AGG 0.481728 1_2:-76507936 None:intergenic
CAACAGTACAATAGAAGTTA+GGG 0.483863 1_2:-76507271 None:intergenic
AGAACATGTTATTATTGCTC+GGG 0.490547 1_2:+76507653 Msa0093680:CDS
CTGATCTGATTCTCACAGCT+GGG 0.491151 1_2:-76508553 None:intergenic
GTGGGATCTCTTGTCAAAGT+TGG 0.491681 1_2:-76508847 None:intergenic
TCCGCTCACCATTACAAGTC+AGG 0.495676 1_2:-76508905 None:intergenic
ATACATCCCTGGAGCTGGCT+GGG 0.504600 1_2:-76507772 None:intergenic
ACTGATCTGATTCTCACAGC+TGG 0.507730 1_2:-76508554 None:intergenic
AATCTGAGTGGGATTCTCAT+AGG 0.508644 1_2:+76508264 Msa0093680:CDS
TTGAGCTGCAAAACCCATCC+AGG 0.509439 1_2:+76508318 Msa0093680:CDS
CTCTTGTCAAAGTTGGAGGT+TGG 0.509900 1_2:-76508840 None:intergenic
AATGTGATCATCAACATAGA+TGG 0.513779 1_2:+76507718 Msa0093680:CDS
AGAGGATAAATCTGCGGAGC+GGG 0.515001 1_2:-76507918 None:intergenic
TCAGGTAACCTGACTTGTAA+TGG 0.516393 1_2:+76508897 Msa0093680:three_prime_UTR
AAAGTCAACTACAACCTCAT+TGG 0.521394 1_2:+76507743 Msa0093680:CDS
CGGGTGTGGGAATTGAAGTC+AGG 0.522163 1_2:+76508879 Msa0093680:three_prime_UTR
ATAGAATACATCCCTGGAGC+TGG 0.524733 1_2:-76507777 None:intergenic
GGCTCTGCCACGGACCTCCT+CGG 0.524963 1_2:-76508599 None:intergenic
AGGACTATTCGTGCTGGACC+AGG 0.526051 1_2:+76507242 Msa0093680:CDS
TGGTGGTGTAAAACATCTAC+TGG 0.531346 1_2:-76508369 None:intergenic
AATTAGAGATTCCACAATGT+TGG 0.532278 1_2:-76507806 None:intergenic
GAGATCCCACCGATTTAATC+GGG 0.532872 1_2:+76508860 Msa0093680:three_prime_UTR
TATTCCACCGTGAGAACCAC+GGG 0.545062 1_2:+76508401 Msa0093680:CDS
TTAAAAGTTAAAACATGTAG+TGG 0.545673 1_2:+76508750 Msa0093680:three_prime_UTR
ATTGCTAAAGTTGCAAACTT+GGG 0.546115 1_2:-76508138 None:intergenic
GTTTATAGGACTATTCGTGC+TGG 0.546194 1_2:+76507236 Msa0093680:CDS
CAAGAACTAAGCTCTGAGCT+TGG 0.546259 1_2:+76508673 Msa0093680:three_prime_UTR
GGAAAATAGAGATAGCGATC+TGG 0.546278 1_2:-76507960 None:intergenic
AAGGTTCAGTCCAGCTCTGT+GGG 0.548319 1_2:-76507210 None:intergenic
ACAAAGTTTGAAATCTGAGT+GGG 0.549256 1_2:+76508253 Msa0093680:CDS
AGGACCCCAGTTCTCAACCT+TGG 0.550405 1_2:-76508482 None:intergenic
TGGAACCAGTCGATGAAGTA+GGG 0.552032 1_2:-76508424 None:intergenic
GTGGAACCAGTCGATGAAGT+AGG 0.552063 1_2:-76508425 None:intergenic
ACGGGCCCTACTTCATCGAC+TGG 0.553849 1_2:+76508419 Msa0093680:CDS
TAGATGATTGTAAGCTTGCA+AGG 0.554943 1_2:-76507677 None:intergenic
AATAGAGATAGCGATCTGGC+TGG 0.555387 1_2:-76507956 None:intergenic
CTCACATTCTCTGGAGCTGG+TGG 0.556361 1_2:-76508176 None:intergenic
GGATAAATCTGCGGAGCGGG+TGG 0.557163 1_2:-76507915 None:intergenic
AACAAAGTTTGAAATCTGAG+TGG 0.557669 1_2:+76508252 Msa0093680:CDS
AGCTCCTCCGAGGAGGTCCG+TGG 0.558445 1_2:+76508592 Msa0093680:CDS
AAAATGCGGCAATAGCTGCT+TGG 0.561052 1_2:+76507351 Msa0093680:CDS
CCCACCGATTTAATCGGGTG+TGG 0.562939 1_2:+76508865 Msa0093680:three_prime_UTR
AAGTTAAAACATGTAGTGGT+AGG 0.564220 1_2:+76508754 Msa0093680:three_prime_UTR
TGGGATTCTCATAGGAGCAT+GGG 0.564651 1_2:+76508272 Msa0093680:CDS
GTAGGCGTTCTTACCATGCC+CGG 0.564896 1_2:-76508512 None:intergenic
TACCTATTGCTGTTGCTCCA+AGG 0.566613 1_2:+76508465 Msa0093680:CDS
GGTCGTACCAAATAATATGT+TGG 0.578094 1_2:+76508775 Msa0093680:three_prime_UTR
GCCATATTGAATCGAGGAGT+AGG 0.583561 1_2:-76508530 None:intergenic
GACCTACCCGTGTTTAACTG+GGG 0.583713 1_2:-76508071 None:intergenic
GAGTTATCATCATTCCCTGT+AGG 0.584039 1_2:+76507990 Msa0093680:CDS
AGTAGGGCCCGTGGTTCTCA+CGG 0.584663 1_2:-76508408 None:intergenic
TATTGCATAGAATACATCCC+TGG 0.584956 1_2:-76507783 None:intergenic
TTGCAAGCTTACAATCATCT+AGG 0.586554 1_2:+76507679 Msa0093680:CDS
CCCACACCCGATTAAATCGG+TGG 0.587107 1_2:-76508866 None:intergenic
CCACCGATTTAATCGGGTGT+GGG 0.589037 1_2:+76508866 Msa0093680:three_prime_UTR
GTGGGATTCTCATAGGAGCA+TGG 0.589395 1_2:+76508271 Msa0093680:CDS
GTGCTATGGCAATCCTGGAT+GGG 0.589997 1_2:-76508331 None:intergenic
TACTTCTCTGCGCTGCACTG+TGG 0.592075 1_2:-76508444 None:intergenic
ACTGGGGTCCTACAAAATCC+GGG 0.595398 1_2:+76508494 Msa0093680:CDS
TCAAAACCCAAAGACAAATG+AGG 0.602477 1_2:+76508647 Msa0093680:CDS
TGGTTTGAATAGTAAAATGG+AGG 0.602953 1_2:-76508041 None:intergenic
TGCTCCAAGGTTGAGAACTG+GGG 0.604742 1_2:+76508478 Msa0093680:CDS
ACCTACCCGTGTTTAACTGG+GGG 0.606494 1_2:-76508070 None:intergenic
TGTGCTATGGCAATCCTGGA+TGG 0.606670 1_2:-76508332 None:intergenic
GAGAATGTGAGACAGAATCA+TGG 0.608383 1_2:+76508188 Msa0093680:CDS
TAGAGAAATTTGGTCCTACA+GGG 0.608737 1_2:-76508004 None:intergenic
ACTTGCTTGTGAATGTGCTA+TGG 0.610090 1_2:-76508345 None:intergenic
AAAATCAAGAAAAGATTGCA+CGG 0.611432 1_2:+76509005 Msa0093680:three_prime_UTR
TCTGCTCAGCTCCTCCGAGG+AGG 0.614250 1_2:+76508585 Msa0093680:CDS
GAAGGTTCAGTCCAGCTCTG+TGG 0.615639 1_2:-76507211 None:intergenic
ACCTGACTTGTAATGGTGAG+CGG 0.620164 1_2:+76508904 Msa0093680:three_prime_UTR
CCACACCCGATTAAATCGGT+GGG 0.629682 1_2:-76508865 None:intergenic
AGTAGTAGTAGAAATGAACT+GGG 0.633731 1_2:+76508224 Msa0093680:CDS
ACGGTGGAATATGAAGCTGC+TGG 0.634524 1_2:-76508389 None:intergenic
TCTATGCAATACCAACATTG+TGG 0.635542 1_2:+76507795 Msa0093680:CDS
ATATTCCACCGTGAGAACCA+CGG 0.642531 1_2:+76508400 Msa0093680:CDS
GGTCCTACAAAATCCGGGCA+TGG 0.643405 1_2:+76508499 Msa0093680:CDS
TTTAGACTCGGATGAAAACG+AGG 0.649330 1_2:-76507616 None:intergenic
TGTCAACCCAGCCAGCTCCA+GGG 0.649692 1_2:+76507766 Msa0093680:CDS
TAGAAGTTAGGGACATGACC+TGG 0.650876 1_2:-76507260 None:intergenic
GAATAGTCCTATAAACAGGA+AGG 0.657626 1_2:-76507229 None:intergenic
TGATCTGATTCTCACAGCTG+GGG 0.665907 1_2:-76508552 None:intergenic
TGCATTAGAGGATAAATCTG+CGG 0.666003 1_2:-76507924 None:intergenic
CAGTCTGCTCAGCTCCTCCG+AGG 0.666022 1_2:+76508582 Msa0093680:CDS
AGTCGATGAAGTAGGGCCCG+TGG 0.681008 1_2:-76508417 None:intergenic
ATTTCTCTATTGCTACACCA+AGG 0.685994 1_2:+76508018 Msa0093680:CDS
TCTGCCACGGACCTCCTCGG+AGG 0.696457 1_2:-76508596 None:intergenic
AGGGCCCGTGGTTCTCACGG+TGG 0.697174 1_2:-76508405 None:intergenic
GCTGGGGCCATATTGAATCG+AGG 0.699473 1_2:-76508536 None:intergenic
TAGAGGATAAATCTGCGGAG+CGG 0.702781 1_2:-76507919 None:intergenic
AGTAGTAGAAATGAACTGGG+AGG 0.710901 1_2:+76508227 Msa0093680:CDS
GTGGAATATGAAGCTGCTGG+TGG 0.712096 1_2:-76508386 None:intergenic
TGGCTGGGTTGACACCAATG+AGG 0.755802 1_2:-76507757 None:intergenic
AATGTGAGACAGAATCATGG+CGG 0.781863 1_2:+76508191 Msa0093680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGGAAATATATATATATA+AGG - chr1_2:76507422-76507441 None:intergenic 15.0%
!! TTTATATTTGAGAATTAAGA+AGG - chr1_2:76508699-76508718 None:intergenic 15.0%
!! ACTGGAAATATATATATATA+AGG - chr1_2:76507422-76507441 None:intergenic 15.0%
!! TTTATATTTGAGAATTAAGA+AGG - chr1_2:76508699-76508718 None:intergenic 15.0%
!! GTCAAATCAAAAAGAATAAT+AGG - chr1_2:76507492-76507511 None:intergenic 20.0%
!!! ATTTGGTTTGAATAGTAAAA+TGG - chr1_2:76508047-76508066 None:intergenic 20.0%
!! TTAAAAGTTAAAACATGTAG+TGG + chr1_2:76508750-76508769 Msa0093680:three_prime_UTR 20.0%
!! ATCGTGAAAAAAAAATTACA+TGG + chr1_2:76508970-76508989 Msa0093680:three_prime_UTR 20.0%
!!! ATCTTTTCTTGATTTTATCA+GGG - chr1_2:76509001-76509020 None:intergenic 20.0%
!!! AATCTTTTCTTGATTTTATC+AGG - chr1_2:76509002-76509021 None:intergenic 20.0%
!! GTCAAATCAAAAAGAATAAT+AGG - chr1_2:76507492-76507511 None:intergenic 20.0%
!!! ATTTGGTTTGAATAGTAAAA+TGG - chr1_2:76508047-76508066 None:intergenic 20.0%
!! TTAAAAGTTAAAACATGTAG+TGG + chr1_2:76508750-76508769 Msa0093680:three_prime_UTR 20.0%
!! ATCGTGAAAAAAAAATTACA+TGG + chr1_2:76508970-76508989 Msa0093680:three_prime_UTR 20.0%
!!! ATCTTTTCTTGATTTTATCA+GGG - chr1_2:76509001-76509020 None:intergenic 20.0%
!!! AATCTTTTCTTGATTTTATC+AGG - chr1_2:76509002-76509021 None:intergenic 20.0%
!!! CTTTTTGATTTGACATTATC+TGG + chr1_2:76507498-76507517 Msa0093680:intron 25.0%
! AAGAACATGTTATTATTGCT+CGG + chr1_2:76507652-76507671 Msa0093680:CDS 25.0%
! AATGATGATAACTCTTTAGA+TGG - chr1_2:76507984-76508003 None:intergenic 25.0%
!! TTTTGCAGCTCAATATTAAT+TGG - chr1_2:76508311-76508330 None:intergenic 25.0%
!!! TTTTGTTTACTTATCTACCA+AGG - chr1_2:76508804-76508823 None:intergenic 25.0%
! TCGAACTACTACTATAATTT+AGG - chr1_2:76508951-76508970 None:intergenic 25.0%
! AAAATCAAGAAAAGATTGCA+CGG + chr1_2:76509005-76509024 Msa0093680:three_prime_UTR 25.0%
!!! CTTTTTGATTTGACATTATC+TGG + chr1_2:76507498-76507517 Msa0093680:intron 25.0%
! AAGAACATGTTATTATTGCT+CGG + chr1_2:76507652-76507671 Msa0093680:CDS 25.0%
! AATGATGATAACTCTTTAGA+TGG - chr1_2:76507984-76508003 None:intergenic 25.0%
!! TTTTGCAGCTCAATATTAAT+TGG - chr1_2:76508311-76508330 None:intergenic 25.0%
!!! TTTTGTTTACTTATCTACCA+AGG - chr1_2:76508804-76508823 None:intergenic 25.0%
! TCGAACTACTACTATAATTT+AGG - chr1_2:76508951-76508970 None:intergenic 25.0%
! AAAATCAAGAAAAGATTGCA+CGG + chr1_2:76509005-76509024 Msa0093680:three_prime_UTR 25.0%
! AGTATACAAGAATTTGCTTC+AGG + chr1_2:76507181-76507200 Msa0093680:CDS 30.0%
CAACAGTACAATAGAAGTTA+GGG - chr1_2:76507274-76507293 None:intergenic 30.0%
TCAACAGTACAATAGAAGTT+AGG - chr1_2:76507275-76507294 None:intergenic 30.0%
!! ATTTTTCTGAGCCTGTTTTT+TGG - chr1_2:76507336-76507355 None:intergenic 30.0%
ATAGAATATAAAGCAAGTCC+CGG - chr1_2:76507542-76507561 None:intergenic 30.0%
TCTAAATTTCTTTCCAGTGT+CGG + chr1_2:76507566-76507585 Msa0093680:intron 30.0%
!! TTCTTCATTGCTTTTAGACT+CGG - chr1_2:76507631-76507650 None:intergenic 30.0%
AGAACATGTTATTATTGCTC+GGG + chr1_2:76507653-76507672 Msa0093680:CDS 30.0%
AATGTGATCATCAACATAGA+TGG + chr1_2:76507718-76507737 Msa0093680:CDS 30.0%
AATTAGAGATTCCACAATGT+TGG - chr1_2:76507809-76507828 None:intergenic 30.0%
!!! AATTGGCTTTTCATCAGATT+TGG + chr1_2:76507838-76507857 Msa0093680:CDS 30.0%
ACAAATTATGCAGCAAATGA+TGG + chr1_2:76507869-76507888 Msa0093680:CDS 30.0%
TGGTTTGAATAGTAAAATGG+AGG - chr1_2:76508044-76508063 None:intergenic 30.0%
TTCTTCTTGTATCTCTCTAA+TGG - chr1_2:76508105-76508124 None:intergenic 30.0%
ATTGCTAAAGTTGCAAACTT+GGG - chr1_2:76508141-76508160 None:intergenic 30.0%
AGTAGTAGTAGAAATGAACT+GGG + chr1_2:76508224-76508243 Msa0093680:CDS 30.0%
! AACAAAGTTTGAAATCTGAG+TGG + chr1_2:76508252-76508271 Msa0093680:CDS 30.0%
! ACAAAGTTTGAAATCTGAGT+GGG + chr1_2:76508253-76508272 Msa0093680:CDS 30.0%
!! AACTCCTTTTTCATTGCTTT+TGG - chr1_2:76508627-76508646 None:intergenic 30.0%
AAGTTAAAACATGTAGTGGT+AGG + chr1_2:76508754-76508773 Msa0093680:three_prime_UTR 30.0%
AAGGCAACCAACATATTATT+TGG - chr1_2:76508785-76508804 None:intergenic 30.0%
! AAATAATATGTTGGTTGCCT+TGG + chr1_2:76508784-76508803 Msa0093680:three_prime_UTR 30.0%
! AGTATACAAGAATTTGCTTC+AGG + chr1_2:76507181-76507200 Msa0093680:CDS 30.0%
CAACAGTACAATAGAAGTTA+GGG - chr1_2:76507274-76507293 None:intergenic 30.0%
TCAACAGTACAATAGAAGTT+AGG - chr1_2:76507275-76507294 None:intergenic 30.0%
!! ATTTTTCTGAGCCTGTTTTT+TGG - chr1_2:76507336-76507355 None:intergenic 30.0%
ATAGAATATAAAGCAAGTCC+CGG - chr1_2:76507542-76507561 None:intergenic 30.0%
TCTAAATTTCTTTCCAGTGT+CGG + chr1_2:76507566-76507585 Msa0093680:intron 30.0%
!! TTCTTCATTGCTTTTAGACT+CGG - chr1_2:76507631-76507650 None:intergenic 30.0%
AGAACATGTTATTATTGCTC+GGG + chr1_2:76507653-76507672 Msa0093680:CDS 30.0%
AATGTGATCATCAACATAGA+TGG + chr1_2:76507718-76507737 Msa0093680:CDS 30.0%
AATTAGAGATTCCACAATGT+TGG - chr1_2:76507809-76507828 None:intergenic 30.0%
!!! AATTGGCTTTTCATCAGATT+TGG + chr1_2:76507838-76507857 Msa0093680:CDS 30.0%
ACAAATTATGCAGCAAATGA+TGG + chr1_2:76507869-76507888 Msa0093680:CDS 30.0%
TGGTTTGAATAGTAAAATGG+AGG - chr1_2:76508044-76508063 None:intergenic 30.0%
TTCTTCTTGTATCTCTCTAA+TGG - chr1_2:76508105-76508124 None:intergenic 30.0%
ATTGCTAAAGTTGCAAACTT+GGG - chr1_2:76508141-76508160 None:intergenic 30.0%
AGTAGTAGTAGAAATGAACT+GGG + chr1_2:76508224-76508243 Msa0093680:CDS 30.0%
! AACAAAGTTTGAAATCTGAG+TGG + chr1_2:76508252-76508271 Msa0093680:CDS 30.0%
! ACAAAGTTTGAAATCTGAGT+GGG + chr1_2:76508253-76508272 Msa0093680:CDS 30.0%
!! AACTCCTTTTTCATTGCTTT+TGG - chr1_2:76508627-76508646 None:intergenic 30.0%
AAGTTAAAACATGTAGTGGT+AGG + chr1_2:76508754-76508773 Msa0093680:three_prime_UTR 30.0%
AAGGCAACCAACATATTATT+TGG - chr1_2:76508785-76508804 None:intergenic 30.0%
! AAATAATATGTTGGTTGCCT+TGG + chr1_2:76508784-76508803 Msa0093680:three_prime_UTR 30.0%
GAATAGTCCTATAAACAGGA+AGG - chr1_2:76507232-76507251 None:intergenic 35.0%
TATTGTACTGTTGAGATTGC+TGG + chr1_2:76507281-76507300 Msa0093680:CDS 35.0%
! ATTGCTGGAATGCATTTTAC+TGG + chr1_2:76507296-76507315 Msa0093680:CDS 35.0%
AAAACAGGCTCAGAAAAATG+CGG + chr1_2:76507337-76507356 Msa0093680:CDS 35.0%
! GAGAAAATGTGAGCATTTTG+CGG + chr1_2:76507382-76507401 Msa0093680:intron 35.0%
ATATTTCCAGTTCAGAGTCA+TGG + chr1_2:76507431-76507450 Msa0093680:intron 35.0%
! GCTTATGCTTCTTTTCTTTC+CGG + chr1_2:76507520-76507539 Msa0093680:intron 35.0%
! CTTATGCTTCTTTTCTTTCC+GGG + chr1_2:76507521-76507540 Msa0093680:intron 35.0%
TAGATGATTGTAAGCTTGCA+AGG - chr1_2:76507680-76507699 None:intergenic 35.0%
TTGCAAGCTTACAATCATCT+AGG + chr1_2:76507679-76507698 Msa0093680:CDS 35.0%
!! CTATGTTGATGATCACATTC+TGG - chr1_2:76507717-76507736 None:intergenic 35.0%
AAAGTCAACTACAACCTCAT+TGG + chr1_2:76507743-76507762 Msa0093680:CDS 35.0%
TATTGCATAGAATACATCCC+TGG - chr1_2:76507786-76507805 None:intergenic 35.0%
TCTATGCAATACCAACATTG+TGG + chr1_2:76507795-76507814 Msa0093680:CDS 35.0%
TGCATTAGAGGATAAATCTG+CGG - chr1_2:76507927-76507946 None:intergenic 35.0%
TAGAGAAATTTGGTCCTACA+GGG - chr1_2:76508007-76508026 None:intergenic 35.0%
ATAGAGAAATTTGGTCCTAC+AGG - chr1_2:76508008-76508027 None:intergenic 35.0%
GGTGTAGCAATAGAGAAATT+TGG - chr1_2:76508017-76508036 None:intergenic 35.0%
ATTTCTCTATTGCTACACCA+AGG + chr1_2:76508018-76508037 Msa0093680:CDS 35.0%
CATTGCTAAAGTTGCAAACT+TGG - chr1_2:76508142-76508161 None:intergenic 35.0%
CAGTAGTAGTAGAAATGAAC+TGG + chr1_2:76508223-76508242 Msa0093680:CDS 35.0%
!! CCTTTTTCATTGCTTTTGGA+CGG - chr1_2:76508623-76508642 None:intergenic 35.0%
TCAAAACCCAAAGACAAATG+AGG + chr1_2:76508647-76508666 Msa0093680:CDS 35.0%
TTGAGACCTCATTTGTCTTT+GGG - chr1_2:76508656-76508675 None:intergenic 35.0%
GGTCGTACCAAATAATATGT+TGG + chr1_2:76508775-76508794 Msa0093680:three_prime_UTR 35.0%
GAATAGTCCTATAAACAGGA+AGG - chr1_2:76507232-76507251 None:intergenic 35.0%
TATTGTACTGTTGAGATTGC+TGG + chr1_2:76507281-76507300 Msa0093680:CDS 35.0%
! ATTGCTGGAATGCATTTTAC+TGG + chr1_2:76507296-76507315 Msa0093680:CDS 35.0%
AAAACAGGCTCAGAAAAATG+CGG + chr1_2:76507337-76507356 Msa0093680:CDS 35.0%
! GAGAAAATGTGAGCATTTTG+CGG + chr1_2:76507382-76507401 Msa0093680:intron 35.0%
ATATTTCCAGTTCAGAGTCA+TGG + chr1_2:76507431-76507450 Msa0093680:intron 35.0%
! GCTTATGCTTCTTTTCTTTC+CGG + chr1_2:76507520-76507539 Msa0093680:intron 35.0%
! CTTATGCTTCTTTTCTTTCC+GGG + chr1_2:76507521-76507540 Msa0093680:intron 35.0%
TAGATGATTGTAAGCTTGCA+AGG - chr1_2:76507680-76507699 None:intergenic 35.0%
TTGCAAGCTTACAATCATCT+AGG + chr1_2:76507679-76507698 Msa0093680:CDS 35.0%
!! CTATGTTGATGATCACATTC+TGG - chr1_2:76507717-76507736 None:intergenic 35.0%
AAAGTCAACTACAACCTCAT+TGG + chr1_2:76507743-76507762 Msa0093680:CDS 35.0%
TATTGCATAGAATACATCCC+TGG - chr1_2:76507786-76507805 None:intergenic 35.0%
TCTATGCAATACCAACATTG+TGG + chr1_2:76507795-76507814 Msa0093680:CDS 35.0%
TGCATTAGAGGATAAATCTG+CGG - chr1_2:76507927-76507946 None:intergenic 35.0%
TAGAGAAATTTGGTCCTACA+GGG - chr1_2:76508007-76508026 None:intergenic 35.0%
ATAGAGAAATTTGGTCCTAC+AGG - chr1_2:76508008-76508027 None:intergenic 35.0%
GGTGTAGCAATAGAGAAATT+TGG - chr1_2:76508017-76508036 None:intergenic 35.0%
ATTTCTCTATTGCTACACCA+AGG + chr1_2:76508018-76508037 Msa0093680:CDS 35.0%
CATTGCTAAAGTTGCAAACT+TGG - chr1_2:76508142-76508161 None:intergenic 35.0%
CAGTAGTAGTAGAAATGAAC+TGG + chr1_2:76508223-76508242 Msa0093680:CDS 35.0%
!! CCTTTTTCATTGCTTTTGGA+CGG - chr1_2:76508623-76508642 None:intergenic 35.0%
TCAAAACCCAAAGACAAATG+AGG + chr1_2:76508647-76508666 Msa0093680:CDS 35.0%
TTGAGACCTCATTTGTCTTT+GGG - chr1_2:76508656-76508675 None:intergenic 35.0%
GGTCGTACCAAATAATATGT+TGG + chr1_2:76508775-76508794 Msa0093680:three_prime_UTR 35.0%
GACTGAACCTTCCTGTTTAT+AGG + chr1_2:76507222-76507241 Msa0093680:CDS 40.0%
GCACGAATAGTCCTATAAAC+AGG - chr1_2:76507236-76507255 None:intergenic 40.0%
GTTTATAGGACTATTCGTGC+TGG + chr1_2:76507236-76507255 Msa0093680:CDS 40.0%
TACTATCCATGACTCTGAAC+TGG - chr1_2:76507440-76507459 None:intergenic 40.0%
TTTAGACTCGGATGAAAACG+AGG - chr1_2:76507619-76507638 None:intergenic 40.0%
CTCTAATTTCTCGCACGAAT+TGG + chr1_2:76507821-76507840 Msa0093680:CDS 40.0%
GGGTGGAATAATTGGTTGAA+TGG - chr1_2:76507901-76507920 None:intergenic 40.0%
TGGATCACAGAATGCATTAG+AGG - chr1_2:76507939-76507958 None:intergenic 40.0%
GGAAAATAGAGATAGCGATC+TGG - chr1_2:76507963-76507982 None:intergenic 40.0%
GAGTTATCATCATTCCCTGT+AGG + chr1_2:76507990-76508009 Msa0093680:CDS 40.0%
GAATAGTAAAATGGAGGCCT+TGG - chr1_2:76508038-76508057 None:intergenic 40.0%
TGTTTAACTGGGGGACAATT+TGG - chr1_2:76508064-76508083 None:intergenic 40.0%
AATTGTCCCCCAGTTAAACA+CGG + chr1_2:76508064-76508083 Msa0093680:CDS 40.0%
TGATTCTGTCTCACATTCTC+TGG - chr1_2:76508188-76508207 None:intergenic 40.0%
GAGAATGTGAGACAGAATCA+TGG + chr1_2:76508188-76508207 Msa0093680:CDS 40.0%
AATGTGAGACAGAATCATGG+CGG + chr1_2:76508191-76508210 Msa0093680:CDS 40.0%
AGTAGTAGAAATGAACTGGG+AGG + chr1_2:76508227-76508246 Msa0093680:CDS 40.0%
AATCTGAGTGGGATTCTCAT+AGG + chr1_2:76508264-76508283 Msa0093680:CDS 40.0%
ACTTGCTTGTGAATGTGCTA+TGG - chr1_2:76508348-76508367 None:intergenic 40.0%
! TGGTGGTGTAAAACATCTAC+TGG - chr1_2:76508372-76508391 None:intergenic 40.0%
CCGTCCAAAAGCAATGAAAA+AGG + chr1_2:76508620-76508639 Msa0093680:CDS 40.0%
CTTGAGACCTCATTTGTCTT+TGG - chr1_2:76508657-76508676 None:intergenic 40.0%
!! AGAGATCCCACCGATTTAAT+CGG + chr1_2:76508859-76508878 Msa0093680:three_prime_UTR 40.0%
ATTCCCACACCCGATTAAAT+CGG - chr1_2:76508872-76508891 None:intergenic 40.0%
! TCAGGTAACCTGACTTGTAA+TGG + chr1_2:76508897-76508916 Msa0093680:three_prime_UTR 40.0%
GACTGAACCTTCCTGTTTAT+AGG + chr1_2:76507222-76507241 Msa0093680:CDS 40.0%
GCACGAATAGTCCTATAAAC+AGG - chr1_2:76507236-76507255 None:intergenic 40.0%
GTTTATAGGACTATTCGTGC+TGG + chr1_2:76507236-76507255 Msa0093680:CDS 40.0%
TACTATCCATGACTCTGAAC+TGG - chr1_2:76507440-76507459 None:intergenic 40.0%
TTTAGACTCGGATGAAAACG+AGG - chr1_2:76507619-76507638 None:intergenic 40.0%
CTCTAATTTCTCGCACGAAT+TGG + chr1_2:76507821-76507840 Msa0093680:CDS 40.0%
GGGTGGAATAATTGGTTGAA+TGG - chr1_2:76507901-76507920 None:intergenic 40.0%
TGGATCACAGAATGCATTAG+AGG - chr1_2:76507939-76507958 None:intergenic 40.0%
GGAAAATAGAGATAGCGATC+TGG - chr1_2:76507963-76507982 None:intergenic 40.0%
GAGTTATCATCATTCCCTGT+AGG + chr1_2:76507990-76508009 Msa0093680:CDS 40.0%
GAATAGTAAAATGGAGGCCT+TGG - chr1_2:76508038-76508057 None:intergenic 40.0%
TGTTTAACTGGGGGACAATT+TGG - chr1_2:76508064-76508083 None:intergenic 40.0%
AATTGTCCCCCAGTTAAACA+CGG + chr1_2:76508064-76508083 Msa0093680:CDS 40.0%
TGATTCTGTCTCACATTCTC+TGG - chr1_2:76508188-76508207 None:intergenic 40.0%
GAGAATGTGAGACAGAATCA+TGG + chr1_2:76508188-76508207 Msa0093680:CDS 40.0%
AATGTGAGACAGAATCATGG+CGG + chr1_2:76508191-76508210 Msa0093680:CDS 40.0%
AGTAGTAGAAATGAACTGGG+AGG + chr1_2:76508227-76508246 Msa0093680:CDS 40.0%
AATCTGAGTGGGATTCTCAT+AGG + chr1_2:76508264-76508283 Msa0093680:CDS 40.0%
ACTTGCTTGTGAATGTGCTA+TGG - chr1_2:76508348-76508367 None:intergenic 40.0%
! TGGTGGTGTAAAACATCTAC+TGG - chr1_2:76508372-76508391 None:intergenic 40.0%
CCGTCCAAAAGCAATGAAAA+AGG + chr1_2:76508620-76508639 Msa0093680:CDS 40.0%
CTTGAGACCTCATTTGTCTT+TGG - chr1_2:76508657-76508676 None:intergenic 40.0%
!! AGAGATCCCACCGATTTAAT+CGG + chr1_2:76508859-76508878 Msa0093680:three_prime_UTR 40.0%
ATTCCCACACCCGATTAAAT+CGG - chr1_2:76508872-76508891 None:intergenic 40.0%
! TCAGGTAACCTGACTTGTAA+TGG + chr1_2:76508897-76508916 Msa0093680:three_prime_UTR 40.0%
TAGAAGTTAGGGACATGACC+TGG - chr1_2:76507263-76507282 None:intergenic 45.0%
! ATTTTACTGGAGACCCAGCT+AGG + chr1_2:76507309-76507328 Msa0093680:CDS 45.0%
!!! CCTGTTTTTTGGTCCTAGCT+GGG - chr1_2:76507325-76507344 None:intergenic 45.0%
AAAATGCGGCAATAGCTGCT+TGG + chr1_2:76507351-76507370 Msa0093680:CDS 45.0%
! GATAACTGATTCTCCGACAC+TGG - chr1_2:76507582-76507601 None:intergenic 45.0%
ATAGAATACATCCCTGGAGC+TGG - chr1_2:76507780-76507799 None:intergenic 45.0%
TAGAGGATAAATCTGCGGAG+CGG - chr1_2:76507922-76507941 None:intergenic 45.0%
AATAGAGATAGCGATCTGGC+TGG - chr1_2:76507959-76507978 None:intergenic 45.0%
ATTGTCCCCCAGTTAAACAC+GGG + chr1_2:76508065-76508084 Msa0093680:CDS 45.0%
TGACCTACCCGTGTTTAACT+GGG - chr1_2:76508075-76508094 None:intergenic 45.0%
TTGACCTACCCGTGTTTAAC+TGG - chr1_2:76508076-76508095 None:intergenic 45.0%
! TGGGATTCTCATAGGAGCAT+GGG + chr1_2:76508272-76508291 Msa0093680:CDS 45.0%
TGAATGTGCTATGGCAATCC+TGG - chr1_2:76508339-76508358 None:intergenic 45.0%
ATATTCCACCGTGAGAACCA+CGG + chr1_2:76508400-76508419 Msa0093680:CDS 45.0%
TGGAACCAGTCGATGAAGTA+GGG - chr1_2:76508427-76508446 None:intergenic 45.0%
! TACCTATTGCTGTTGCTCCA+AGG + chr1_2:76508465-76508484 Msa0093680:CDS 45.0%
AACCTTGGAGCAACAGCAAT+AGG - chr1_2:76508470-76508489 None:intergenic 45.0%
TTGCTCCAAGGTTGAGAACT+GGG + chr1_2:76508477-76508496 Msa0093680:CDS 45.0%
AACTGGGGTCCTACAAAATC+CGG + chr1_2:76508493-76508512 Msa0093680:CDS 45.0%
! TTACCATGCCCGGATTTTGT+AGG - chr1_2:76508505-76508524 None:intergenic 45.0%
GCCTACTCCTCGATTCAATA+TGG + chr1_2:76508529-76508548 Msa0093680:CDS 45.0%
GCCATATTGAATCGAGGAGT+AGG - chr1_2:76508533-76508552 None:intergenic 45.0%
TGATCTGATTCTCACAGCTG+GGG - chr1_2:76508555-76508574 None:intergenic 45.0%
CTGATCTGATTCTCACAGCT+GGG - chr1_2:76508556-76508575 None:intergenic 45.0%
ACTGATCTGATTCTCACAGC+TGG - chr1_2:76508557-76508576 None:intergenic 45.0%
!! CAAGAACTAAGCTCTGAGCT+TGG + chr1_2:76508673-76508692 Msa0093680:three_prime_UTR 45.0%
CTCTTGTCAAAGTTGGAGGT+TGG - chr1_2:76508843-76508862 None:intergenic 45.0%
GGATCTCTTGTCAAAGTTGG+AGG - chr1_2:76508847-76508866 None:intergenic 45.0%
GTGGGATCTCTTGTCAAAGT+TGG - chr1_2:76508850-76508869 None:intergenic 45.0%
!! GAGATCCCACCGATTTAATC+GGG + chr1_2:76508860-76508879 Msa0093680:three_prime_UTR 45.0%
! ACCTGACTTGTAATGGTGAG+CGG + chr1_2:76508904-76508923 Msa0093680:three_prime_UTR 45.0%
TAGAAGTTAGGGACATGACC+TGG - chr1_2:76507263-76507282 None:intergenic 45.0%
! ATTTTACTGGAGACCCAGCT+AGG + chr1_2:76507309-76507328 Msa0093680:CDS 45.0%
!!! CCTGTTTTTTGGTCCTAGCT+GGG - chr1_2:76507325-76507344 None:intergenic 45.0%
AAAATGCGGCAATAGCTGCT+TGG + chr1_2:76507351-76507370 Msa0093680:CDS 45.0%
! GATAACTGATTCTCCGACAC+TGG - chr1_2:76507582-76507601 None:intergenic 45.0%
ATAGAATACATCCCTGGAGC+TGG - chr1_2:76507780-76507799 None:intergenic 45.0%
TAGAGGATAAATCTGCGGAG+CGG - chr1_2:76507922-76507941 None:intergenic 45.0%
AATAGAGATAGCGATCTGGC+TGG - chr1_2:76507959-76507978 None:intergenic 45.0%
ATTGTCCCCCAGTTAAACAC+GGG + chr1_2:76508065-76508084 Msa0093680:CDS 45.0%
TGACCTACCCGTGTTTAACT+GGG - chr1_2:76508075-76508094 None:intergenic 45.0%
TTGACCTACCCGTGTTTAAC+TGG - chr1_2:76508076-76508095 None:intergenic 45.0%
! TGGGATTCTCATAGGAGCAT+GGG + chr1_2:76508272-76508291 Msa0093680:CDS 45.0%
TGAATGTGCTATGGCAATCC+TGG - chr1_2:76508339-76508358 None:intergenic 45.0%
ATATTCCACCGTGAGAACCA+CGG + chr1_2:76508400-76508419 Msa0093680:CDS 45.0%
TGGAACCAGTCGATGAAGTA+GGG - chr1_2:76508427-76508446 None:intergenic 45.0%
! TACCTATTGCTGTTGCTCCA+AGG + chr1_2:76508465-76508484 Msa0093680:CDS 45.0%
AACCTTGGAGCAACAGCAAT+AGG - chr1_2:76508470-76508489 None:intergenic 45.0%
TTGCTCCAAGGTTGAGAACT+GGG + chr1_2:76508477-76508496 Msa0093680:CDS 45.0%
AACTGGGGTCCTACAAAATC+CGG + chr1_2:76508493-76508512 Msa0093680:CDS 45.0%
! TTACCATGCCCGGATTTTGT+AGG - chr1_2:76508505-76508524 None:intergenic 45.0%
GCCTACTCCTCGATTCAATA+TGG + chr1_2:76508529-76508548 Msa0093680:CDS 45.0%
GCCATATTGAATCGAGGAGT+AGG - chr1_2:76508533-76508552 None:intergenic 45.0%
TGATCTGATTCTCACAGCTG+GGG - chr1_2:76508555-76508574 None:intergenic 45.0%
CTGATCTGATTCTCACAGCT+GGG - chr1_2:76508556-76508575 None:intergenic 45.0%
ACTGATCTGATTCTCACAGC+TGG - chr1_2:76508557-76508576 None:intergenic 45.0%
!! CAAGAACTAAGCTCTGAGCT+TGG + chr1_2:76508673-76508692 Msa0093680:three_prime_UTR 45.0%
CTCTTGTCAAAGTTGGAGGT+TGG - chr1_2:76508843-76508862 None:intergenic 45.0%
GGATCTCTTGTCAAAGTTGG+AGG - chr1_2:76508847-76508866 None:intergenic 45.0%
GTGGGATCTCTTGTCAAAGT+TGG - chr1_2:76508850-76508869 None:intergenic 45.0%
!! GAGATCCCACCGATTTAATC+GGG + chr1_2:76508860-76508879 Msa0093680:three_prime_UTR 45.0%
! ACCTGACTTGTAATGGTGAG+CGG + chr1_2:76508904-76508923 Msa0093680:three_prime_UTR 45.0%
AAGGTTCAGTCCAGCTCTGT+GGG - chr1_2:76507213-76507232 None:intergenic 50.0%
CCCAGCTAGGACCAAAAAAC+AGG + chr1_2:76507322-76507341 Msa0093680:CDS 50.0%
!!! GCCTGTTTTTTGGTCCTAGC+TGG - chr1_2:76507326-76507345 None:intergenic 50.0%
AGAGGATAAATCTGCGGAGC+GGG - chr1_2:76507921-76507940 None:intergenic 50.0%
ACCTACCCGTGTTTAACTGG+GGG - chr1_2:76508073-76508092 None:intergenic 50.0%
GACCTACCCGTGTTTAACTG+GGG - chr1_2:76508074-76508093 None:intergenic 50.0%
!! TGTCTCACATTCTCTGGAGC+TGG - chr1_2:76508182-76508201 None:intergenic 50.0%
GTGGGATTCTCATAGGAGCA+TGG + chr1_2:76508271-76508290 Msa0093680:CDS 50.0%
TTGAGCTGCAAAACCCATCC+AGG + chr1_2:76508318-76508337 Msa0093680:CDS 50.0%
GTGCTATGGCAATCCTGGAT+GGG - chr1_2:76508334-76508353 None:intergenic 50.0%
TGTGCTATGGCAATCCTGGA+TGG - chr1_2:76508335-76508354 None:intergenic 50.0%
GTGGAATATGAAGCTGCTGG+TGG - chr1_2:76508389-76508408 None:intergenic 50.0%
ACGGTGGAATATGAAGCTGC+TGG - chr1_2:76508392-76508411 None:intergenic 50.0%
TATTCCACCGTGAGAACCAC+GGG + chr1_2:76508401-76508420 Msa0093680:CDS 50.0%
GTGGAACCAGTCGATGAAGT+AGG - chr1_2:76508428-76508447 None:intergenic 50.0%
GTTGCTCCAAGGTTGAGAAC+TGG + chr1_2:76508476-76508495 Msa0093680:CDS 50.0%
TGCTCCAAGGTTGAGAACTG+GGG + chr1_2:76508478-76508497 Msa0093680:CDS 50.0%
ACTGGGGTCCTACAAAATCC+GGG + chr1_2:76508494-76508513 Msa0093680:CDS 50.0%
CCACACCCGATTAAATCGGT+GGG - chr1_2:76508868-76508887 None:intergenic 50.0%
!! CCACCGATTTAATCGGGTGT+GGG + chr1_2:76508866-76508885 Msa0093680:three_prime_UTR 50.0%
TCCGCTCACCATTACAAGTC+AGG - chr1_2:76508908-76508927 None:intergenic 50.0%
AAGGTTCAGTCCAGCTCTGT+GGG - chr1_2:76507213-76507232 None:intergenic 50.0%
CCCAGCTAGGACCAAAAAAC+AGG + chr1_2:76507322-76507341 Msa0093680:CDS 50.0%
!!! GCCTGTTTTTTGGTCCTAGC+TGG - chr1_2:76507326-76507345 None:intergenic 50.0%
AGAGGATAAATCTGCGGAGC+GGG - chr1_2:76507921-76507940 None:intergenic 50.0%
ACCTACCCGTGTTTAACTGG+GGG - chr1_2:76508073-76508092 None:intergenic 50.0%
GACCTACCCGTGTTTAACTG+GGG - chr1_2:76508074-76508093 None:intergenic 50.0%
!! TGTCTCACATTCTCTGGAGC+TGG - chr1_2:76508182-76508201 None:intergenic 50.0%
GTGGGATTCTCATAGGAGCA+TGG + chr1_2:76508271-76508290 Msa0093680:CDS 50.0%
TTGAGCTGCAAAACCCATCC+AGG + chr1_2:76508318-76508337 Msa0093680:CDS 50.0%
GTGCTATGGCAATCCTGGAT+GGG - chr1_2:76508334-76508353 None:intergenic 50.0%
TGTGCTATGGCAATCCTGGA+TGG - chr1_2:76508335-76508354 None:intergenic 50.0%
GTGGAATATGAAGCTGCTGG+TGG - chr1_2:76508389-76508408 None:intergenic 50.0%
ACGGTGGAATATGAAGCTGC+TGG - chr1_2:76508392-76508411 None:intergenic 50.0%
TATTCCACCGTGAGAACCAC+GGG + chr1_2:76508401-76508420 Msa0093680:CDS 50.0%
GTGGAACCAGTCGATGAAGT+AGG - chr1_2:76508428-76508447 None:intergenic 50.0%
GTTGCTCCAAGGTTGAGAAC+TGG + chr1_2:76508476-76508495 Msa0093680:CDS 50.0%
TGCTCCAAGGTTGAGAACTG+GGG + chr1_2:76508478-76508497 Msa0093680:CDS 50.0%
ACTGGGGTCCTACAAAATCC+GGG + chr1_2:76508494-76508513 Msa0093680:CDS 50.0%
CCACACCCGATTAAATCGGT+GGG - chr1_2:76508868-76508887 None:intergenic 50.0%
!! CCACCGATTTAATCGGGTGT+GGG + chr1_2:76508866-76508885 Msa0093680:three_prime_UTR 50.0%
TCCGCTCACCATTACAAGTC+AGG - chr1_2:76508908-76508927 None:intergenic 50.0%
GAAGGTTCAGTCCAGCTCTG+TGG - chr1_2:76507214-76507233 None:intergenic 55.0%
AGGACTATTCGTGCTGGACC+AGG + chr1_2:76507242-76507261 Msa0093680:CDS 55.0%
! TGGCTGGGTTGACACCAATG+AGG - chr1_2:76507760-76507779 None:intergenic 55.0%
ATACATCCCTGGAGCTGGCT+GGG - chr1_2:76507775-76507794 None:intergenic 55.0%
AATACATCCCTGGAGCTGGC+TGG - chr1_2:76507776-76507795 None:intergenic 55.0%
TGCGGAGCGGGTGGAATAAT+TGG - chr1_2:76507909-76507928 None:intergenic 55.0%
TCCCCCAGTTAAACACGGGT+AGG + chr1_2:76508069-76508088 Msa0093680:CDS 55.0%
!! CATTCTCTGGAGCTGGTGGT+TGG - chr1_2:76508175-76508194 None:intergenic 55.0%
!! CTCACATTCTCTGGAGCTGG+TGG - chr1_2:76508179-76508198 None:intergenic 55.0%
TACTTCTCTGCGCTGCACTG+TGG - chr1_2:76508447-76508466 None:intergenic 55.0%
AGGACCCCAGTTCTCAACCT+TGG - chr1_2:76508485-76508504 None:intergenic 55.0%
GGTCCTACAAAATCCGGGCA+TGG + chr1_2:76508499-76508518 Msa0093680:CDS 55.0%
GTAGGCGTTCTTACCATGCC+CGG - chr1_2:76508515-76508534 None:intergenic 55.0%
GCTGGGGCCATATTGAATCG+AGG - chr1_2:76508539-76508558 None:intergenic 55.0%
!! CCCACCGATTTAATCGGGTG+TGG + chr1_2:76508865-76508884 Msa0093680:three_prime_UTR 55.0%
CCCACACCCGATTAAATCGG+TGG - chr1_2:76508869-76508888 None:intergenic 55.0%
CGGGTGTGGGAATTGAAGTC+AGG + chr1_2:76508879-76508898 Msa0093680:three_prime_UTR 55.0%
GAAGGTTCAGTCCAGCTCTG+TGG - chr1_2:76507214-76507233 None:intergenic 55.0%
AGGACTATTCGTGCTGGACC+AGG + chr1_2:76507242-76507261 Msa0093680:CDS 55.0%
! TGGCTGGGTTGACACCAATG+AGG - chr1_2:76507760-76507779 None:intergenic 55.0%
ATACATCCCTGGAGCTGGCT+GGG - chr1_2:76507775-76507794 None:intergenic 55.0%
AATACATCCCTGGAGCTGGC+TGG - chr1_2:76507776-76507795 None:intergenic 55.0%
TGCGGAGCGGGTGGAATAAT+TGG - chr1_2:76507909-76507928 None:intergenic 55.0%
TCCCCCAGTTAAACACGGGT+AGG + chr1_2:76508069-76508088 Msa0093680:CDS 55.0%
!! CATTCTCTGGAGCTGGTGGT+TGG - chr1_2:76508175-76508194 None:intergenic 55.0%
!! CTCACATTCTCTGGAGCTGG+TGG - chr1_2:76508179-76508198 None:intergenic 55.0%
TACTTCTCTGCGCTGCACTG+TGG - chr1_2:76508447-76508466 None:intergenic 55.0%
AGGACCCCAGTTCTCAACCT+TGG - chr1_2:76508485-76508504 None:intergenic 55.0%
GGTCCTACAAAATCCGGGCA+TGG + chr1_2:76508499-76508518 Msa0093680:CDS 55.0%
GTAGGCGTTCTTACCATGCC+CGG - chr1_2:76508515-76508534 None:intergenic 55.0%
GCTGGGGCCATATTGAATCG+AGG - chr1_2:76508539-76508558 None:intergenic 55.0%
!! CCCACCGATTTAATCGGGTG+TGG + chr1_2:76508865-76508884 Msa0093680:three_prime_UTR 55.0%
CCCACACCCGATTAAATCGG+TGG - chr1_2:76508869-76508888 None:intergenic 55.0%
CGGGTGTGGGAATTGAAGTC+AGG + chr1_2:76508879-76508898 Msa0093680:three_prime_UTR 55.0%
CAGGAAACTGCCCACAGAGC+TGG + chr1_2:76507200-76507219 Msa0093680:CDS 60.0%
TGTCAACCCAGCCAGCTCCA+GGG + chr1_2:76507766-76507785 Msa0093680:CDS 60.0%
GGATAAATCTGCGGAGCGGG+TGG - chr1_2:76507918-76507937 None:intergenic 60.0%
AGTAGGGCCCGTGGTTCTCA+CGG - chr1_2:76508411-76508430 None:intergenic 60.0%
AGTCGATGAAGTAGGGCCCG+TGG - chr1_2:76508420-76508439 None:intergenic 60.0%
ACGGGCCCTACTTCATCGAC+TGG + chr1_2:76508419-76508438 Msa0093680:CDS 60.0%
! GCTTTTGGACGGCTCTGCCA+CGG - chr1_2:76508612-76508631 None:intergenic 60.0%
CAGGAAACTGCCCACAGAGC+TGG + chr1_2:76507200-76507219 Msa0093680:CDS 60.0%
TGTCAACCCAGCCAGCTCCA+GGG + chr1_2:76507766-76507785 Msa0093680:CDS 60.0%
GGATAAATCTGCGGAGCGGG+TGG - chr1_2:76507918-76507937 None:intergenic 60.0%
AGTAGGGCCCGTGGTTCTCA+CGG - chr1_2:76508411-76508430 None:intergenic 60.0%
AGTCGATGAAGTAGGGCCCG+TGG - chr1_2:76508420-76508439 None:intergenic 60.0%
ACGGGCCCTACTTCATCGAC+TGG + chr1_2:76508419-76508438 Msa0093680:CDS 60.0%
! GCTTTTGGACGGCTCTGCCA+CGG - chr1_2:76508612-76508631 None:intergenic 60.0%
GTGTCAACCCAGCCAGCTCC+AGG + chr1_2:76507765-76507784 Msa0093680:CDS 65.0%
CTCGGAGGAGCTGAGCAGAC+TGG - chr1_2:76508584-76508603 None:intergenic 65.0%
CAGTCTGCTCAGCTCCTCCG+AGG + chr1_2:76508582-76508601 Msa0093680:CDS 65.0%
TCTGCTCAGCTCCTCCGAGG+AGG + chr1_2:76508585-76508604 Msa0093680:CDS 65.0%
GTGTCAACCCAGCCAGCTCC+AGG + chr1_2:76507765-76507784 Msa0093680:CDS 65.0%
CTCGGAGGAGCTGAGCAGAC+TGG - chr1_2:76508584-76508603 None:intergenic 65.0%
CAGTCTGCTCAGCTCCTCCG+AGG + chr1_2:76508582-76508601 Msa0093680:CDS 65.0%
TCTGCTCAGCTCCTCCGAGG+AGG + chr1_2:76508585-76508604 Msa0093680:CDS 65.0%
AGGGCCCGTGGTTCTCACGG+TGG - chr1_2:76508408-76508427 None:intergenic 70.0%
AGCTCCTCCGAGGAGGTCCG+TGG + chr1_2:76508592-76508611 Msa0093680:CDS 70.0%
TCTGCCACGGACCTCCTCGG+AGG - chr1_2:76508599-76508618 None:intergenic 70.0%
GGCTCTGCCACGGACCTCCT+CGG - chr1_2:76508602-76508621 None:intergenic 70.0%
AGGGCCCGTGGTTCTCACGG+TGG - chr1_2:76508408-76508427 None:intergenic 70.0%
AGCTCCTCCGAGGAGGTCCG+TGG + chr1_2:76508592-76508611 Msa0093680:CDS 70.0%
TCTGCCACGGACCTCCTCGG+AGG - chr1_2:76508599-76508618 None:intergenic 70.0%
GGCTCTGCCACGGACCTCCT+CGG - chr1_2:76508602-76508621 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76507167 76509038 76507167 ID=Msa0093680;Name=Msa0093680
chr1_2 mRNA 76507167 76509038 76507167 ID=Msa0093680-mRNA-1;Parent=Msa0093680;Name=Msa0093680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|371|435
chr1_2 exon 76507167 76507389 76507167 ID=Msa0093680-mRNA-1:exon:27008;Parent=Msa0093680-mRNA-1
chr1_2 exon 76507583 76509038 76507583 ID=Msa0093680-mRNA-1:exon:27009;Parent=Msa0093680-mRNA-1
chr1_2 CDS 76507167 76507389 76507167 ID=Msa0093680-mRNA-1:cds;Parent=Msa0093680-mRNA-1
chr1_2 CDS 76507583 76508667 76507583 ID=Msa0093680-mRNA-1:cds;Parent=Msa0093680-mRNA-1
chr1_2 three_prime_UTR 76508668 76509038 76508668 ID=Msa0093680-mRNA-1:three_prime_utr;Parent=Msa0093680-mRNA-1
Gene Sequence

>Msa0093680

CAGGATGAAACAGGAGTATACAAGAATTTGCTTCAGGAAACTGCCCACAGAGCTGGACTGAACCTTCCTGTTTATAGGACTATTCGTGCTGGACCAGGTCATGTCCCTAACTTCTATTGTACTGTTGAGATTGCTGGAATGCATTTTACTGGAGACCCAGCTAGGACCAAAAAACAGGCTCAGAAAAATGCGGCAATAGCTGCTTGGTCTGCATTGAGAAAATTGTCGGAGAATCAGTTATCTTCTTCAACTTCATCCTCGTTTTCATCCGAGTCTAAAAGCAATGAAGAACAAGAACATGTTATTATTGCTCGGGTCCTTGCAAGCTTACAATCATCTAGGTCAAAGAACTTTCCAGAATGTGATCATCAACATAGATGGCAAAAGTCAACTACAACCTCATTGGTGTCAACCCAGCCAGCTCCAGGGATGTATTCTATGCAATACCAACATTGTGGAATCTCTAATTTCTCGCACGAATTGGCTTTTCATCAGATTTGGCAGCAAGAACAAATTATGCAGCAAATGATGGCACTAACCATTCAACCAATTATTCCACCCGCTCCGCAGATTTATCCTCTAATGCATTCTGTGATCCAGCCAGATCGCTATCTCTATTTTCCATCTAAAGAGTTATCATCATTCCCTGTAGGACCAAATTTCTCTATTGCTACACCAAGGCCTCCATTTTACTATTCAAACCAAATTGTCCCCCAGTTAAACACGGGTAGGTCAACAGTAACCATTAGAGAGATACAAGAAGAAAAAGCAGAAGACTCCCAAGTTTGCAACTTTAGCAATGAGACAAGAGTCCAACCACCAGCTCCAGAGAATGTGAGACAGAATCATGGCGGCTCTCGAAGCAGTAGTAGTAGAAATGAACTGGGAGGAGAACAAAGTTTGAAATCTGAGTGGGATTCTCATAGGAGCATGGGATATGCACACAAACCAATTAATATTGAGCTGCAAAACCCATCCAGGATTGCCATAGCACATTCACAAGCAAGTTCCAGTAGATGTTTTACACCACCAGCAGCTTCATATTCCACCGTGAGAACCACGGGCCCTACTTCATCGACTGGTTCCACAGTGCAGCGCAGAGAAGTACCTATTGCTGTTGCTCCAAGGTTGAGAACTGGGGTCCTACAAAATCCGGGCATGGTAAGAACGCCTACTCCTCGATTCAATATGGCCCCAGCTGTGAGAATCAGATCAGTAGTTCCAGTCTGCTCAGCTCCTCCGAGGAGGTCCGTGGCAGAGCCGTCCAAAAGCAATGAAAAAGGAGTTTCAAAACCCAAAGACAAATGA
Protein sequence

>Msa0093680

QDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFYCTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKLSENQLSSSTSSSFSSESKSNEEQEHVIIARVLASLQSSRSKNFPECDHQHRWQKSTTTSLVSTQPAPGMYSMQYQHCGISNFSHELAFHQIWQQEQIMQQMMALTIQPIIPPAPQIYPLMHSVIQPDRYLYFPSKELSSFPVGPNFSIATPRPPFYYSNQIVPQLNTGRSTVTIREIQEEKAEDSQVCNFSNETRVQPPAPENVRQNHGGSRSSSSRNELGGEQSLKSEWDSHRSMGYAHKPINIELQNPSRIAIAHSQASSSRCFTPPAASYSTVRTTGPTSSTGSTVQRREVPIAVAPRLRTGVLQNPGMVRTPTPRFNMAPAVRIRSVVPVCSAPPRRSVAEPSKSNEKGVSKPKDK*