AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296980 MtrunA17_Chr2g0320011 99.457 184 1 0 2 185 243 426 1.21e-135 385
Msa0296980 MtrunA17_Chr2g0284091 91.111 180 16 0 2 181 195 374 3.37e-125 357
Msa0296980 MtrunA17_Chr2g0277011 81.921 177 31 1 2 177 245 421 8.75e-108 315
Msa0296980 MtrunA17_Chr7g0270371 80.447 179 34 1 2 179 230 408 7.84e-106 309
Msa0296980 MtrunA17_Chr7g0246591 80.460 174 33 1 2 174 296 469 7.47e-105 308
Msa0296980 MtrunA17_Chr1g0194201 79.330 179 36 1 2 179 230 408 2.35e-104 305
Msa0296980 MtrunA17_Chr1g0193081 80.682 176 33 1 2 176 230 405 2.74e-104 305
Msa0296980 MtrunA17_Chr8g0350311 80.460 174 33 1 2 174 294 467 9.15e-103 303
Msa0296980 MtrunA17_Chr4g0030231 39.474 152 86 4 7 155 200 348 8.04e-30 112
Msa0296980 MtrunA17_Chr4g0030151 36.879 141 83 4 1 136 191 330 1.33e-27 106
Msa0296980 MtrunA17_Chr4g0045841 35.606 132 82 2 7 136 215 345 1.80e-27 106
Msa0296980 MtrunA17_Chr4g0002001 37.795 127 78 1 8 134 181 306 2.87e-27 104
Msa0296980 MtrunA17_Chr8g0387401 35.526 152 92 3 7 155 212 360 1.16e-26 104
Msa0296980 MtrunA17_Chr8g0378831 36.986 146 84 2 7 147 193 335 1.62e-26 103
Msa0296980 MtrunA17_Chr3g0141871 39.583 144 83 3 7 147 193 335 2.00e-26 103
Msa0296980 MtrunA17_Chr5g0397261 34.731 167 99 4 7 169 201 361 3.76e-26 102
Msa0296980 MtrunA17_Chr1g0187371 37.795 127 78 1 8 134 186 311 1.13e-25 100
Msa0296980 MtrunA17_Chr3g0102571 37.415 147 83 2 2 143 236 378 1.25e-25 101
Msa0296980 MtrunA17_Chr8g0348481 36.047 172 101 4 7 174 197 363 1.83e-25 100
Msa0296980 MtrunA17_Chr7g0248461 34.940 166 100 3 7 169 198 358 2.12e-25 100
Msa0296980 MtrunA17_Chr3g0131861 38.547 179 96 4 2 179 252 417 3.67e-25 101
Msa0296980 MtrunA17_Chr3g0122781 34.177 158 81 3 6 140 574 731 4.86e-25 101
Msa0296980 MtrunA17_Chr5g0396361 40.157 127 74 2 6 131 299 424 3.04e-23 95.9
Msa0296980 MtrunA17_Chr7g0273601 36.723 177 98 4 1 176 261 424 6.36e-23 95.1
Msa0296980 MtrunA17_Chr2g0324461 33.898 177 101 5 6 180 300 462 1.07e-22 94.4
Msa0296980 MtrunA17_Chr8g0385971 37.430 179 90 7 6 179 249 410 2.40e-22 93.2
Msa0296980 MtrunA17_Chr2g0286421 35.795 176 99 4 6 180 261 423 2.91e-22 93.2
Msa0296980 MtrunA17_Chr1g0191221 39.860 143 82 3 8 149 283 422 3.22e-22 93.2
Msa0296980 MtrunA17_Chr6g0483151 36.508 126 75 3 8 131 172 294 4.28e-22 92.0
Msa0296980 MtrunA17_Chr5g0401371 36.667 150 79 6 2 139 263 408 6.02e-22 91.7
Msa0296980 MtrunA17_Chr8g0392811 35.204 196 108 7 6 185 280 472 6.43e-22 92.0
Msa0296980 MtrunA17_Chr4g0053821 37.143 140 73 4 8 135 242 378 9.50e-22 90.9
Msa0296980 MtrunA17_Chr3g0130781 35.099 151 82 3 8 142 191 341 1.22e-21 91.3
Msa0296980 MtrunA17_Chr8g0377071 34.014 147 77 4 8 140 545 685 1.35e-21 91.3
Msa0296980 MtrunA17_Chr4g0065851 39.735 151 66 4 6 140 188 329 1.55e-21 90.9
Msa0296980 MtrunA17_Chr4g0066691 35.227 176 100 4 6 180 263 425 1.96e-21 90.9
Msa0296980 MtrunA17_Chr4g0051261 34.559 136 73 5 8 135 164 291 2.64e-21 88.6
Msa0296980 MtrunA17_Chr2g0293491 33.083 133 79 4 8 135 164 291 3.49e-21 88.2
Msa0296980 MtrunA17_Chr8g0369451 34.646 127 80 2 7 131 158 283 4.53e-21 89.4
Msa0296980 MtrunA17_Chr2g0287271 37.278 169 97 6 6 169 188 352 4.90e-21 89.7
Msa0296980 MtrunA17_Chr6g0486031 35.821 134 84 1 6 137 273 406 4.95e-21 89.0
Msa0296980 MtrunA17_Chr8g0339221 36.957 138 81 2 7 142 158 291 7.90e-21 88.6
Msa0296980 MtrunA17_Chr8g0390341 35.385 130 82 2 6 133 286 415 1.36e-20 88.2
Msa0296980 MtrunA17_Chr2g0317501 38.168 131 73 4 5 131 292 418 2.38e-20 87.8
Msa0296980 MtrunA17_Chr5g0443351 37.714 175 98 6 6 172 185 356 2.49e-20 87.4
Msa0296980 MtrunA17_Chr4g0040141 33.333 177 102 5 6 180 288 450 2.68e-20 87.4
Msa0296980 MtrunA17_Chr8g0359091 35.714 196 107 7 6 185 189 381 4.51e-20 87.0
Msa0296980 MtrunA17_Chr4g0057791 34.559 136 81 2 6 133 378 513 4.74e-20 86.7
Msa0296980 MtrunA17_Chr6g0453711 36.620 142 86 3 6 146 269 407 4.90e-20 86.7
Msa0296980 MtrunA17_Chr1g0201571 34.911 169 100 5 8 175 287 446 8.38e-20 86.3
Msa0296980 MtrunA17_Chr3g0102601 34.559 136 80 2 10 140 82 213 1.20e-19 83.2
Msa0296980 MtrunA17_Chr4g0030241 48.485 66 34 0 7 72 61 126 1.34e-19 81.6
Msa0296980 MtrunA17_Chr4g0053951 33.333 144 81 4 8 139 273 413 1.54e-19 85.1
Msa0296980 MtrunA17_Chr4g0061141 34.483 145 91 3 6 149 264 405 2.51e-19 84.7
Msa0296980 MtrunA17_Chr8g0358921 34.848 132 76 3 8 134 212 338 3.89e-19 83.2
Msa0296980 MtrunA17_Chr3g0096631 38.095 168 97 6 6 169 188 352 8.30e-19 83.2
Msa0296980 MtrunA17_Chr7g0218071 36.842 133 73 5 6 132 279 406 9.48e-19 83.2
Msa0296980 MtrunA17_Chr3g0099951 34.752 141 87 3 10 148 176 313 1.09e-18 82.4
Msa0296980 MtrunA17_Chr8g0383451 44.304 79 43 1 8 86 159 236 1.12e-18 82.8
Msa0296980 MtrunA17_Chr5g0409421 33.824 136 69 4 7 131 158 283 3.91e-18 81.3
Msa0296980 MtrunA17_Chr6g0482681 40.972 144 74 5 6 140 252 393 4.13e-18 81.3
Msa0296980 MtrunA17_Chr3g0093391 29.927 137 71 2 8 131 198 322 6.99e-18 80.5
Msa0296980 MtrunA17_Chr3g0093571 29.197 137 72 2 8 131 200 324 5.81e-17 77.8
Msa0296980 MtrunA17_Chr8g0369241 55.556 63 27 1 3 65 298 359 7.24e-17 77.8
Msa0296980 MtrunA17_Chr2g0314321 38.509 161 71 6 6 140 188 346 2.09e-15 73.6
Msa0296980 MtrunA17_Chr6g0480541 33.333 147 82 4 6 137 1061 1206 3.44e-15 72.8
Msa0296980 MtrunA17_Chr8g0360761 33.884 121 62 3 13 131 80 184 2.62e-11 59.7
Msa0296980 MtrunA17_Chr8g0378871 34.343 99 55 3 36 128 6 100 3.03e-11 58.9
Msa0296980 MtrunA17_Chr8g0392821 36.538 104 52 2 25 128 47 136 4.15e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296980 AT2G30980.1 94.505 182 10 0 2 183 227 408 6.23e-127 363
Msa0296980 AT4G18710.1 90.556 180 17 0 2 181 195 374 2.24e-124 355
Msa0296980 AT1G06390.2 93.333 180 12 0 2 181 225 404 2.59e-123 354
Msa0296980 AT1G06390.1 93.333 180 12 0 2 181 225 404 2.59e-123 354
Msa0296980 AT5G14640.1 84.091 176 27 1 2 176 229 404 2.00e-109 318
Msa0296980 AT5G14640.2 84.091 176 27 1 2 176 229 404 2.00e-109 318
Msa0296980 AT3G05840.2 82.386 176 30 1 2 176 228 403 8.99e-108 314
Msa0296980 AT3G05840.1 82.386 176 30 1 2 176 228 403 8.99e-108 314
Msa0296980 AT1G09840.11 80.226 177 34 1 2 177 111 287 1.50e-107 310
Msa0296980 AT1G57870.1 81.356 177 32 1 2 177 237 413 3.34e-107 313
Msa0296980 AT1G57870.4 81.356 177 32 1 2 177 237 413 3.34e-107 313
Msa0296980 AT1G57870.2 81.356 177 32 1 2 177 237 413 3.34e-107 313
Msa0296980 AT1G09840.3 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.7 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.10 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.6 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.4 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.1 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.9 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.5 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.8 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G09840.2 80.226 177 34 1 2 177 238 414 7.22e-107 312
Msa0296980 AT1G57870.3 81.356 177 32 1 2 177 237 413 1.08e-106 313
Msa0296980 AT4G00720.1 81.609 174 31 1 2 174 293 466 3.60e-106 312
Msa0296980 AT5G26751.1 81.818 176 31 1 2 176 224 399 5.63e-106 310
Msa0296980 AT3G61160.2 76.000 175 41 1 2 175 264 438 5.60e-98 290
Msa0296980 AT3G61160.1 76.000 175 41 1 2 175 257 431 5.66e-98 290
Msa0296980 AT3G61160.4 75.949 158 38 0 2 159 257 414 2.63e-89 268
Msa0296980 AT3G61160.5 77.049 122 28 0 2 123 257 378 2.09e-68 213
Msa0296980 AT3G61160.3 80.000 95 19 0 2 96 257 351 4.48e-53 173
Msa0296980 AT3G61160.6 80.000 95 19 0 2 96 264 358 5.80e-53 173
Msa0296980 AT4G18710.2 90.123 81 8 0 2 82 189 269 4.66e-47 155
Msa0296980 AT3G59790.1 36.932 176 94 5 2 169 213 379 2.04e-29 112
Msa0296980 AT2G38620.4 39.568 139 59 4 8 134 119 244 3.52e-28 105
Msa0296980 AT2G46070.1 36.095 169 94 3 7 169 201 361 1.03e-27 107
Msa0296980 AT2G38620.2 39.568 139 59 4 8 134 181 306 1.12e-27 106
Msa0296980 AT2G46070.3 36.095 169 94 3 7 169 235 395 1.48e-27 107
Msa0296980 AT1G76540.1 38.235 136 75 3 8 139 182 312 3.73e-27 104
Msa0296980 AT3G54180.1 37.681 138 63 4 8 134 179 304 1.42e-26 103
Msa0296980 AT3G45640.1 33.735 166 102 4 7 169 198 358 1.61e-26 103
Msa0296980 AT3G48750.1 36.434 129 78 3 8 134 164 290 5.07e-26 101
Msa0296980 AT1G20930.1 36.567 134 84 1 1 134 177 309 1.05e-25 100
Msa0296980 AT2G43790.1 36.095 169 93 4 7 169 223 382 1.66e-25 101
Msa0296980 AT4G01370.1 35.057 174 101 4 7 177 203 367 2.37e-25 100
Msa0296980 AT1G07880.2 35.669 157 95 4 2 155 188 341 3.16e-25 100
Msa0296980 AT1G01560.2 33.908 174 103 4 7 177 200 364 3.61e-25 100
Msa0296980 AT1G73670.1 36.410 195 107 6 6 185 253 445 4.31e-25 101
Msa0296980 AT2G18170.1 38.095 147 81 3 7 147 193 335 4.80e-25 100
Msa0296980 AT1G73690.1 32.796 186 104 6 8 181 169 345 6.14e-25 100
Msa0296980 AT2G46070.2 38.843 121 72 1 7 125 201 321 9.53e-25 98.6
Msa0296980 AT4G19110.3 38.462 130 71 4 7 131 102 227 2.68e-24 98.6
Msa0296980 AT4G19110.1 38.462 130 71 4 7 131 158 283 4.38e-24 98.2
Msa0296980 AT4G19110.2 38.462 130 71 4 7 131 158 283 4.63e-24 98.2
Msa0296980 AT4G36450.1 37.584 149 85 3 7 150 190 335 7.23e-24 96.7
Msa0296980 AT5G50860.1 35.638 188 101 6 2 185 269 440 1.73e-23 97.1
Msa0296980 AT5G50860.2 35.638 188 101 6 2 185 269 440 1.82e-23 96.7
Msa0296980 AT4G11330.1 35.556 135 83 2 7 138 203 336 3.78e-23 95.1
Msa0296980 AT4G13020.4 36.310 168 83 5 7 156 158 319 4.19e-23 95.1
Msa0296980 AT4G13020.8 36.310 168 83 5 7 156 167 328 4.71e-23 94.7
Msa0296980 AT4G13020.7 37.342 158 79 4 7 150 158 309 4.78e-23 94.7
Msa0296980 AT4G13020.6 36.310 168 83 5 7 156 158 319 4.79e-23 94.7
Msa0296980 AT4G13020.1 36.310 168 83 5 7 156 158 319 5.06e-23 95.1
Msa0296980 AT4G10010.1 39.231 130 71 4 6 131 135 260 5.42e-23 95.1
Msa0296980 AT4G13020.2 36.310 168 83 5 7 156 166 327 5.92e-23 95.1
Msa0296980 AT4G13020.3 36.310 168 83 5 7 156 166 327 5.95e-23 95.1
Msa0296980 AT4G13020.5 36.310 168 83 5 7 156 167 328 6.38e-23 95.1
Msa0296980 AT1G18040.1 34.483 145 86 5 8 148 170 309 6.50e-23 94.4
Msa0296980 AT1G59580.2 37.415 147 82 4 7 147 193 335 8.09e-23 94.0
Msa0296980 AT1G59580.1 37.415 147 82 4 7 147 193 335 8.09e-23 94.0
Msa0296980 AT4G10010.2 39.231 130 71 4 6 131 315 440 8.50e-23 95.1
Msa0296980 AT1G10210.2 37.415 147 82 4 7 147 193 335 8.79e-23 94.0
Msa0296980 AT1G10210.3 37.415 147 82 4 7 147 193 335 8.79e-23 94.0
Msa0296980 AT1G10210.1 37.415 147 82 4 7 147 193 335 8.79e-23 94.0
Msa0296980 AT5G63610.1 36.232 138 74 3 8 131 196 333 1.31e-22 94.4
Msa0296980 AT1G66750.1 32.402 179 107 7 8 178 171 343 1.66e-22 92.8
Msa0296980 AT1G67580.1 34.014 147 77 4 8 140 566 706 3.05e-22 93.6
Msa0296980 AT1G67580.2 34.014 147 77 4 8 140 566 706 3.05e-22 93.6
Msa0296980 AT5G19010.1 38.462 169 95 6 6 169 188 352 4.20e-22 93.2
Msa0296980 AT5G63370.2 35.135 148 74 5 8 140 328 468 4.84e-22 92.8
Msa0296980 AT5G63370.3 35.135 148 74 5 8 140 328 468 4.84e-22 92.8
Msa0296980 AT5G63370.7 35.135 148 74 5 8 140 462 602 6.18e-22 92.8
Msa0296980 AT5G63370.8 35.135 148 74 5 8 140 462 602 6.18e-22 92.8
Msa0296980 AT5G63370.4 35.135 148 74 5 8 140 462 602 6.18e-22 92.8
Msa0296980 AT5G63370.6 35.135 148 74 5 8 140 462 602 6.18e-22 92.8
Msa0296980 AT5G63370.1 35.135 148 74 5 8 140 462 602 6.18e-22 92.8
Msa0296980 AT1G71530.2 38.462 130 72 3 6 131 306 431 1.34e-21 91.3
Msa0296980 AT1G71530.1 38.462 130 72 3 6 131 306 431 1.67e-21 91.3
Msa0296980 AT2G23080.1 36.986 146 76 6 2 135 182 323 2.12e-21 89.7
Msa0296980 AT1G54610.1 35.057 174 95 4 6 176 277 435 3.03e-21 90.5
Msa0296980 AT1G54610.3 35.057 174 95 4 6 176 277 435 3.03e-21 90.5
Msa0296980 AT1G54610.2 35.057 174 95 4 6 176 277 435 3.03e-21 90.5
Msa0296980 AT1G18150.3 37.949 195 102 8 6 184 267 458 3.13e-21 90.5
Msa0296980 AT1G18150.2 37.949 195 102 8 6 184 267 458 3.13e-21 90.5
Msa0296980 AT1G18150.1 37.949 195 102 8 6 184 267 458 3.13e-21 90.5
Msa0296980 AT5G45430.1 36.154 130 74 4 7 131 158 283 3.46e-21 90.5
Msa0296980 AT3G01085.1 37.879 132 73 4 6 132 274 401 3.81e-21 90.5
Msa0296980 AT3G01085.2 37.879 132 73 4 6 132 274 401 3.81e-21 90.5
Msa0296980 AT3G01085.3 37.879 132 73 4 6 132 274 401 3.85e-21 90.5
Msa0296980 AT5G45430.2 36.154 130 74 4 7 131 158 283 3.91e-21 90.1
Msa0296980 AT5G67380.2 36.429 140 74 4 8 135 230 366 4.45e-21 89.4
Msa0296980 AT1G09600.1 35.172 145 84 5 6 146 322 460 4.72e-21 90.1
Msa0296980 AT5G67380.1 36.429 140 74 4 8 135 263 399 5.19e-21 89.4
Msa0296980 AT3G50000.1 36.429 140 74 4 8 135 257 393 9.94e-21 88.6
Msa0296980 AT1G53050.2 34.254 181 93 5 5 178 292 453 1.12e-20 89.0
Msa0296980 AT1G53050.1 34.254 181 93 5 5 178 292 453 1.12e-20 89.0
Msa0296980 AT1G71530.3 37.405 131 74 3 6 132 306 432 1.12e-20 88.6
Msa0296980 AT1G01560.3 35.294 119 73 2 7 122 200 317 3.01e-20 86.7
Msa0296980 AT3G18040.2 38.922 167 97 4 6 169 98 262 4.64e-20 86.7
Msa0296980 AT2G01450.3 35.928 167 76 6 6 155 179 331 5.33e-20 87.0
Msa0296980 AT2G01450.1 35.928 167 76 6 6 155 179 331 5.33e-20 87.0
Msa0296980 AT2G01450.2 35.928 167 76 6 6 155 179 331 5.33e-20 87.0
Msa0296980 AT2G01450.4 35.928 167 76 6 6 155 179 331 5.33e-20 87.0
Msa0296980 AT3G18040.5 38.922 167 97 4 6 169 181 345 5.86e-20 86.7
Msa0296980 AT3G18040.1 38.922 167 97 4 6 169 186 350 5.96e-20 86.7
Msa0296980 AT2G23070.1 34.483 145 78 5 8 139 285 425 6.27e-20 86.7
Msa0296980 AT3G18040.4 38.922 167 97 4 6 169 295 459 8.57e-20 86.7
Msa0296980 AT3G18040.3 38.922 167 97 4 6 169 295 459 1.00e-19 86.3
Msa0296980 AT2G42880.1 36.994 173 100 6 6 173 188 356 2.78e-19 85.1
Msa0296980 AT2G42880.2 36.994 173 100 6 6 173 188 356 3.12e-19 84.7
Msa0296980 AT3G05050.3 35.821 134 69 2 8 131 299 425 4.47e-19 84.3
Msa0296980 AT3G05050.2 35.821 134 69 2 8 131 299 425 4.47e-19 84.3
Msa0296980 AT3G05050.1 35.821 134 69 2 8 131 299 425 4.47e-19 84.3
Msa0296980 AT5G63370.5 54.098 61 28 0 8 68 462 522 6.44e-19 84.0
Msa0296980 AT5G63370.10 54.098 61 28 0 8 68 462 522 6.44e-19 84.0
Msa0296980 AT5G63370.9 46.341 82 38 2 8 89 328 403 6.96e-19 83.6
Msa0296980 AT1G74330.1 34.028 144 93 1 6 149 282 423 1.10e-18 83.2
Msa0296980 AT1G74330.2 34.028 144 93 1 6 149 282 423 1.11e-18 83.2
Msa0296980 AT1G57700.1 36.434 129 76 2 6 131 305 430 1.11e-18 83.2
Msa0296980 AT1G74330.3 34.028 144 93 1 6 149 282 423 1.22e-18 83.2
Msa0296980 AT1G03740.2 34.228 149 87 5 6 149 372 514 1.54e-18 82.8
Msa0296980 AT1G33770.1 36.842 133 70 3 6 131 300 425 1.82e-18 82.8
Msa0296980 AT1G03740.1 34.228 149 87 5 6 149 372 514 2.38e-18 82.4
Msa0296980 AT5G39420.1 34.459 148 87 5 6 149 264 405 2.67e-18 82.0
Msa0296980 AT4G22940.2 32.061 131 79 2 6 131 263 388 4.16e-18 81.6
Msa0296980 AT4G22940.1 32.061 131 79 2 6 131 263 388 4.41e-18 81.3
Msa0296980 AT4G28980.3 32.824 131 84 3 6 133 291 420 7.89e-18 80.9
Msa0296980 AT4G28980.1 32.824 131 84 3 6 133 291 420 7.89e-18 80.9
Msa0296980 AT4G28980.2 32.824 131 84 3 6 133 291 420 7.89e-18 80.9
Msa0296980 AT1G53510.1 40.141 142 76 5 7 140 189 329 1.17e-17 80.5
Msa0296980 AT3G14720.1 37.419 155 90 5 6 155 188 340 1.77e-17 79.7
Msa0296980 AT3G14720.2 36.310 168 100 5 6 169 188 352 2.11e-17 79.3
Msa0296980 AT3G14720.3 36.310 168 100 5 6 169 188 352 2.11e-17 79.3
Msa0296980 AT5G44290.7 34.646 127 81 2 6 131 296 421 3.94e-17 78.6
Msa0296980 AT5G44290.6 34.646 127 81 2 6 131 296 421 4.05e-17 79.0
Msa0296980 AT5G44290.2 34.646 127 81 2 6 131 296 421 4.85e-17 78.6
Msa0296980 AT5G44290.5 34.646 127 81 2 6 131 296 421 4.85e-17 78.6
Msa0296980 AT5G44290.4 34.646 127 81 2 6 131 296 421 4.85e-17 78.6
Msa0296980 AT5G44290.1 34.646 127 81 2 6 131 296 421 4.85e-17 78.6
Msa0296980 AT5G44290.3 34.646 127 81 2 6 131 296 421 4.85e-17 78.6
Msa0296980 AT5G35980.1 56.250 64 27 1 2 65 279 341 6.49e-17 78.2
Msa0296980 AT5G35980.3 56.250 64 27 1 2 65 244 306 6.84e-17 78.2
Msa0296980 AT5G35980.2 56.250 64 27 1 2 65 279 341 7.34e-17 78.2
Msa0296980 AT1G18670.3 51.613 62 30 0 6 67 291 352 8.33e-17 77.8
Msa0296980 AT1G18670.2 51.613 62 30 0 6 67 291 352 8.43e-17 77.8
Msa0296980 AT1G18670.1 51.613 62 30 0 6 67 291 352 8.55e-17 77.8
Msa0296980 AT5G10270.1 30.657 137 70 2 8 131 201 325 1.26e-16 77.4
Msa0296980 AT5G64960.1 29.927 137 71 2 8 131 201 325 2.19e-16 76.6
Msa0296980 AT5G64960.2 29.927 137 71 2 8 131 148 272 2.31e-16 76.3
Msa0296980 AT3G17750.1 34.014 147 81 4 6 137 990 1135 5.79e-16 75.5
Msa0296980 AT1G01560.4 52.632 57 27 0 7 63 200 256 1.24e-15 73.2
Msa0296980 AT1G01560.1 52.632 57 27 0 7 63 200 256 1.24e-15 73.2
Msa0296980 AT2G38620.3 47.368 57 30 0 8 64 181 237 5.21e-15 71.2
Msa0296980 AT2G38620.1 47.368 57 30 0 8 64 181 237 5.21e-15 71.2
Msa0296980 AT1G07880.1 48.387 62 32 0 2 63 188 249 1.83e-14 69.7
Msa0296980 AT1G73450.1 31.973 147 84 4 6 137 1004 1149 8.08e-14 69.3
Msa0296980 AT1G73460.2 31.973 147 84 4 6 137 1021 1166 8.10e-14 69.3
Msa0296980 AT1G73460.1 31.973 147 84 4 6 137 1021 1166 8.10e-14 69.3
Msa0296980 AT1G71530.4 55.102 49 22 0 6 54 306 354 2.31e-13 67.4
Msa0296980 AT4G24740.10 29.412 153 82 5 6 135 72 221 1.67e-12 63.9
Msa0296980 AT4G24740.8 29.412 153 82 5 6 135 72 221 1.67e-12 63.9
Msa0296980 AT4G24740.6 29.412 153 82 5 6 135 175 324 4.25e-12 63.9
Msa0296980 AT4G24740.9 29.412 153 82 5 6 135 175 324 4.25e-12 63.9
Msa0296980 AT4G24740.2 29.412 153 82 5 6 135 175 324 4.25e-12 63.9
Msa0296980 AT4G24740.1 29.412 153 82 5 6 135 278 427 5.09e-12 63.9
Msa0296980 AT4G24740.7 29.412 153 82 5 6 135 240 389 6.14e-12 63.5
Msa0296980 AT2G23080.2 43.939 66 35 2 2 66 182 246 7.47e-12 63.2
Msa0296980 AT2G40120.1 32.143 140 79 3 7 131 425 563 1.48e-11 62.8

Find 90 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCGACTGTCCTATTTAA+TGG 0.120815 2_3:+50554133 None:intergenic
AATCTAAAATCGGTATAATT+AGG 0.189346 2_3:+50555265 None:intergenic
TCACCTTGGTAGTAGTATTT+TGG 0.203251 2_3:-50554048 Msa0296980:three_prime_UTR
CCAACTTGTGGAAATTATTA+AGG 0.217629 2_3:-50555406 Msa0296980:intron
TTAAACACAGGTCCCCTTTA+TGG 0.231472 2_3:-50554347 Msa0296980:three_prime_UTR
ATTATGTGCTAGCCGGGATA+TGG 0.248494 2_3:+50554416 None:intergenic
TGGTCAATAGATTAGGATTC+AGG 0.248591 2_3:-50554327 Msa0296980:three_prime_UTR
ATGAGTTTGTTGATCAGTTC+GGG 0.276001 2_3:+50554476 None:intergenic
TCCTAATCTATTGACCATAA+AGG 0.282232 2_3:+50554333 None:intergenic
GGGACAGGGTGATTGGGGTT+TGG 0.283317 2_3:+50554283 None:intergenic
TACATGTATACATACATCTT+TGG 0.288205 2_3:+50554260 None:intergenic
GTCGCACCAAATATTAGTTC+TGG 0.290280 2_3:+50555635 None:intergenic
GTCCTTGCAGAACTTCTTCT+AGG 0.299647 2_3:-50555572 Msa0296980:CDS
CGGGCCCCAGAACTAATATT+TGG 0.307097 2_3:-50555641 Msa0296980:CDS
GGAGGAAAACTTCATATATA+AGG 0.307412 2_3:+50554304 None:intergenic
CCTAATCTATTGACCATAAA+GGG 0.316003 2_3:+50554334 None:intergenic
GTCTGCCGCCTGACATGCTC+TGG 0.316734 2_3:+50554452 None:intergenic
ACATGTATACATACATCTTT+GGG 0.319146 2_3:+50554261 None:intergenic
CCCTTTATGGTCAATAGATT+AGG 0.345337 2_3:-50554334 Msa0296980:three_prime_UTR
TACAGCACTGCAACGAAGAC+TGG 0.361598 2_3:+50555041 None:intergenic
TCTGTAGATTTCCATTAAAT+AGG 0.362706 2_3:-50554144 Msa0296980:three_prime_UTR
GTTTAACATTAATAACTAGA+AGG 0.370563 2_3:+50554364 None:intergenic
GAACTATGACTGCAGTTATC+TGG 0.375919 2_3:-50554506 Msa0296980:intron
ACAGGGTGATTGGGGTTTGG+AGG 0.375975 2_3:+50554286 None:intergenic
GGAGGCAGAGGACGACCATT+AGG 0.380209 2_3:+50554747 None:intergenic
GATGAGTTTGTTGATCAGTT+CGG 0.382539 2_3:+50554475 None:intergenic
TCTGTCTTGTTGTAGGTTCT+GGG 0.382612 2_3:-50555322 Msa0296980:intron
ATCTAAAATCGGTATAATTA+GGG 0.385897 2_3:+50555266 None:intergenic
GTCAGGCGGCAGACTGGTCT+TGG 0.388687 2_3:-50554443 Msa0296980:CDS
ACACAACTTCTATTGATATC+TGG 0.405958 2_3:-50555607 Msa0296980:CDS
GATGCAAGGTCAATAGCTTC+AGG 0.407077 2_3:+50555084 None:intergenic
ATTGTTCCCAGGAGAGAATC+AGG 0.412948 2_3:-50555433 Msa0296980:CDS
AACTCATCCCAGAGCATGTC+AGG 0.416246 2_3:-50554460 Msa0296980:CDS
TGGTCCACCTGATTCTCTCC+TGG 0.438100 2_3:+50555426 None:intergenic
ACCATTAGGAAGTCGGGCAT+TGG 0.441262 2_3:+50554761 None:intergenic
ACATATGTTCACGGTACTAT+CGG 0.442437 2_3:-50555661 Msa0296980:CDS
TGCAGAACTTCTTCTAGGCC+AGG 0.447190 2_3:-50555567 Msa0296980:intron
TTTCCACATTGGTAGGGGTA+TGG 0.450639 2_3:-50554099 Msa0296980:three_prime_UTR
GAGATATTTAGACAGATTCA+AGG 0.450672 2_3:+50554211 None:intergenic
CCTTAATAATTTCCACAAGT+TGG 0.455315 2_3:+50555406 None:intergenic
TCTATTGATATCTGGTCAGC+TGG 0.462275 2_3:-50555599 Msa0296980:CDS
CCATTAGGAAGTCGGGCATT+GGG 0.462607 2_3:+50554762 None:intergenic
CCCAATGCCCGACTTCCTAA+TGG 0.462672 2_3:-50554762 Msa0296980:CDS
TCGCACCAAATATTAGTTCT+GGG 0.465026 2_3:+50555636 None:intergenic
CAACGAATTTCTTCTCGAGT+TGG 0.465895 2_3:+50555295 None:intergenic
AATCTGAGGGAATCTAAAAT+CGG 0.472595 2_3:+50555255 None:intergenic
TCCTGTTTAAAGTTGAAAAG+TGG 0.482404 2_3:+50554726 None:intergenic
ACATTTCATACATATGTTCA+CGG 0.484281 2_3:-50555670 Msa0296980:CDS
TCTTTACATTATGTGCTAGC+CGG 0.488032 2_3:+50554409 None:intergenic
GGTCCACCTGATTCTCTCCT+GGG 0.492943 2_3:+50555427 None:intergenic
TTATGTGCTAGCCGGGATAT+GGG 0.494084 2_3:+50554417 None:intergenic
AGGACGACCATTAGGAAGTC+GGG 0.497009 2_3:+50554755 None:intergenic
TAAAGCTCATCCTTGGCATA+AGG 0.498985 2_3:-50555233 Msa0296980:intron
CTCAGATTAAAGCTCATCCT+TGG 0.502861 2_3:-50555240 Msa0296980:CDS
GAGCATGTCAGGCGGCAGAC+TGG 0.504261 2_3:-50554449 Msa0296980:CDS
CTTTACATTATGTGCTAGCC+GGG 0.510841 2_3:+50554410 None:intergenic
ATGCAAGGTCAATAGCTTCA+GGG 0.517357 2_3:+50555085 None:intergenic
TTTAACATTAATAACTAGAA+GGG 0.518586 2_3:+50554365 None:intergenic
AGATGTATGTATACATGTAC+TGG 0.528710 2_3:-50554256 Msa0296980:three_prime_UTR
GGTCTTGGCTTCCCATATCC+CGG 0.532965 2_3:-50554428 Msa0296980:CDS
TTTCTTTAGCCATTGTTCCC+AGG 0.533380 2_3:-50555444 Msa0296980:intron
CATATGTTCACGGTACTATC+GGG 0.538773 2_3:-50555660 Msa0296980:CDS
TCTCGAAGCTCATCAAAGAA+AGG 0.540074 2_3:+50554786 None:intergenic
TGCAAGGTCAATAGCTTCAG+GGG 0.543998 2_3:+50555086 None:intergenic
AAGCTATTGACCTTGCATCA+AGG 0.546812 2_3:-50555080 Msa0296980:CDS
TCTGCCGCCTGACATGCTCT+GGG 0.548719 2_3:+50554453 None:intergenic
TGATTCTCTCCTGGGAACAA+TGG 0.562742 2_3:+50555435 None:intergenic
CAAGGATGAGCTTTAATCTG+AGG 0.572535 2_3:+50555241 None:intergenic
GAATCAGGTGGACCAACTTG+TGG 0.581712 2_3:-50555418 Msa0296980:CDS
GAGGACGACCATTAGGAAGT+CGG 0.589621 2_3:+50554754 None:intergenic
ACAGCACTGCAACGAAGACT+GGG 0.591157 2_3:+50555042 None:intergenic
AAGGATGAGCTTTAATCTGA+GGG 0.595864 2_3:+50555242 None:intergenic
AAGTTGAAAAGTGGAGGCAG+AGG 0.596930 2_3:+50554735 None:intergenic
TGTTTAAAGTTGAAAAGTGG+AGG 0.598961 2_3:+50554729 None:intergenic
AAGCCAAAATACTACTACCA+AGG 0.603545 2_3:+50554045 None:intergenic
ATTGAAGAAGCCTTGATGCA+AGG 0.605699 2_3:+50555070 None:intergenic
TGAGTTTGTTGATCAGTTCG+GGG 0.610421 2_3:+50554477 None:intergenic
TAGTTATTAATGTTAAACAC+AGG 0.622127 2_3:-50554359 Msa0296980:three_prime_UTR
CGCACCAAATATTAGTTCTG+GGG 0.625777 2_3:+50555637 None:intergenic
TATGCAACTACCTTATGCCA+AGG 0.626007 2_3:+50555223 None:intergenic
GAAAACAATGAATAAATGCA+AGG 0.629785 2_3:+50554165 None:intergenic
CTAATCTATTGACCATAAAG+GGG 0.641019 2_3:+50554335 None:intergenic
GAGTTTGTTGATCAGTTCGG+GGG 0.644687 2_3:+50554478 None:intergenic
GGCCTAGAAGAAGTTCTGCA+AGG 0.647249 2_3:+50555570 None:intergenic
ATGTATACATACATCTTTGG+GGG 0.666732 2_3:+50554263 None:intergenic
TCATCCCAGAGCATGTCAGG+CGG 0.689594 2_3:-50554457 Msa0296980:CDS
CATGTATACATACATCTTTG+GGG 0.692106 2_3:+50554262 None:intergenic
GCAAGGTCAATAGCTTCAGG+GGG 0.699028 2_3:+50555087 None:intergenic
TAGCCATACCCCTACCAATG+TGG 0.704587 2_3:+50554096 None:intergenic
GTTCCCAGGAGAGAATCAGG+TGG 0.715521 2_3:-50555430 Msa0296980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAACGAAAAAAAATT+AGG + chr2_3:50554789-50554808 None:intergenic 10.0%
!! AAAACAAATTAAACCAAATT+TGG + chr2_3:50554665-50554684 None:intergenic 15.0%
!!! AATTTGGTTTAATTTGTTTT+AGG - chr2_3:50554665-50554684 Msa0296980:intron 15.0%
!!! AATGATAATATTTCTATATC+AGG - chr2_3:50554827-50554846 Msa0296980:intron 15.0%
!! CTAATAATCATACTAAAATA+TGG + chr2_3:50555618-50555637 None:intergenic 15.0%
!! TTATTCTATTGATAAAATGT+TGG - chr2_3:50555858-50555877 Msa0296980:intron 15.0%
!! TTTAACATTAATAACTAGAA+GGG + chr2_3:50556173-50556192 None:intergenic 15.0%
!! TGTAGTTCATAAAAAATTAT+GGG - chr2_3:50556464-50556483 Msa0296980:intron 15.0%
!! TCAATATTCCAACATTAAAA+TGG + chr2_3:50554445-50554464 None:intergenic 20.0%
!! TCAAGATAACATATAACAAA+GGG + chr2_3:50555052-50555071 None:intergenic 20.0%
!!! ATCTAAAATCGGTATAATTA+GGG + chr2_3:50555272-50555291 None:intergenic 20.0%
!!! AATCTAAAATCGGTATAATT+AGG + chr2_3:50555273-50555292 None:intergenic 20.0%
!!! TTTCTAACAACAAATTTTCT+GGG - chr2_3:50555355-50555374 Msa0296980:intron 20.0%
!!! GATATAATGAAAGTACATAT+GGG + chr2_3:50555534-50555553 None:intergenic 20.0%
!! ATCAATAGAATAACTCAATT+TGG + chr2_3:50555851-50555870 None:intergenic 20.0%
!! CATCAAATTTATGATATGTT+TGG + chr2_3:50555974-50555993 None:intergenic 20.0%
!! AACATATCATAAATTTGATG+AGG - chr2_3:50555974-50555993 Msa0296980:intron 20.0%
!! GTTTAACATTAATAACTAGA+AGG + chr2_3:50556174-50556193 None:intergenic 20.0%
!! TAGTTATTAATGTTAAACAC+AGG - chr2_3:50556176-50556195 Msa0296980:intron 20.0%
!! CTGTAGTTCATAAAAAATTA+TGG - chr2_3:50556463-50556482 Msa0296980:intron 20.0%
! TTCGTGTCATATTTATTGTA+AGG + chr2_3:50554094-50554113 None:intergenic 25.0%
! NNNNNNTGTGTTTGTACCAT+AGG - chr2_3:50554312-50554331 Msa0296980:three_prime_UTR 25.0%
!! CAAAAATAAAAGTGCACTTA+TGG + chr2_3:50554518-50554537 None:intergenic 25.0%
! TTTATTCTCAATCTCATGAT+AGG + chr2_3:50554614-50554633 None:intergenic 25.0%
! GGTAAATGTTAGTAAATTAG+TGG - chr2_3:50554686-50554705 Msa0296980:intron 25.0%
! ACACAGAAAAAATTCTAACT+AGG + chr2_3:50554745-50554764 None:intergenic 25.0%
!! AATATTTCTATATCAGGTCA+AGG - chr2_3:50554833-50554852 Msa0296980:intron 25.0%
!! ATATTTCTATATCAGGTCAA+GGG - chr2_3:50554834-50554853 Msa0296980:intron 25.0%
! ACATTTCATACATATGTTCA+CGG - chr2_3:50554865-50554884 Msa0296980:intron 25.0%
! GTCAAGATAACATATAACAA+AGG + chr2_3:50555053-50555072 None:intergenic 25.0%
! ATCTGTAACTAGATTCATTA+AGG + chr2_3:50555180-50555199 None:intergenic 25.0%
! CTAGTTACAGATATTTATTC+TGG - chr2_3:50555188-50555207 Msa0296980:intron 25.0%
!! CTTTCTAACAACAAATTTTC+TGG - chr2_3:50555354-50555373 Msa0296980:intron 25.0%
!! GGATATAATGAAAGTACATA+TGG + chr2_3:50555535-50555554 None:intergenic 25.0%
! TCATTATATCCTTCCTATTA+AGG - chr2_3:50555544-50555563 Msa0296980:intron 25.0%
!! TTATGTAGTGTTTTTCACAA+TGG - chr2_3:50555644-50555663 Msa0296980:CDS 25.0%
!! TATGTAGTGTTTTTCACAAT+GGG - chr2_3:50555645-50555664 Msa0296980:CDS 25.0%
! ATGATTGTTTATTATTCAGC+TGG - chr2_3:50555712-50555731 Msa0296980:intron 25.0%
! ACATGTATACATACATCTTT+GGG + chr2_3:50556277-50556296 None:intergenic 25.0%
! TACATGTATACATACATCTT+TGG + chr2_3:50556278-50556297 None:intergenic 25.0%
! GAAAACAATGAATAAATGCA+AGG + chr2_3:50556373-50556392 None:intergenic 25.0%
! TCTGTAGATTTCCATTAAAT+AGG - chr2_3:50556391-50556410 Msa0296980:intron 25.0%
! AAGTTAAGCTTTGCGATTTT+GGG - chr2_3:50554353-50554372 Msa0296980:three_prime_UTR 30.0%
!! GTATGCTACCATTTTAATGT+TGG - chr2_3:50554434-50554453 Msa0296980:CDS 30.0%
TCATGATAGGTAAACAGAAT+GGG + chr2_3:50554601-50554620 None:intergenic 30.0%
TCATGAGATTGAGAATAAAC+CGG - chr2_3:50554615-50554634 Msa0296980:intron 30.0%
AATTCCAACTAATATCCTTC+CGG + chr2_3:50554637-50554656 None:intergenic 30.0%
TTGGAATTAGATGCCAAATT+TGG - chr2_3:50554649-50554668 Msa0296980:intron 30.0%
CAGAAAAAATTCTAACTAGG+AGG + chr2_3:50554742-50554761 None:intergenic 30.0%
ACACAACTTCTATTGATATC+TGG - chr2_3:50554928-50554947 Msa0296980:intron 30.0%
CCTTAATAATTTCCACAAGT+TGG + chr2_3:50555132-50555151 None:intergenic 30.0%
CCAACTTGTGGAAATTATTA+AGG - chr2_3:50555129-50555148 Msa0296980:intron 30.0%
! AATCTGAGGGAATCTAAAAT+CGG + chr2_3:50555283-50555302 None:intergenic 30.0%
!! TATTTTGTTTGGGTGATTGA+TGG - chr2_3:50555381-50555400 Msa0296980:intron 30.0%
TATATCCTTCCTATTAAGGA+TGG - chr2_3:50555548-50555567 Msa0296980:intron 30.0%
! ATGTAGTGTTTTTCACAATG+GGG - chr2_3:50555646-50555665 Msa0296980:CDS 30.0%
! TGTTTAAAGTTGAAAAGTGG+AGG + chr2_3:50555809-50555828 None:intergenic 30.0%
!! TCCACTTTTCAACTTTAAAC+AGG - chr2_3:50555808-50555827 Msa0296980:intron 30.0%
! TCCTGTTTAAAGTTGAAAAG+TGG + chr2_3:50555812-50555831 None:intergenic 30.0%
TGATAAAATGTTGGAAACTG+CGG - chr2_3:50555867-50555886 Msa0296980:intron 30.0%
ACTAAAACATTGATCTTCTG+CGG + chr2_3:50555913-50555932 None:intergenic 30.0%
CTAATCTATTGACCATAAAG+GGG + chr2_3:50556203-50556222 None:intergenic 30.0%
CCTAATCTATTGACCATAAA+GGG + chr2_3:50556204-50556223 None:intergenic 30.0%
TCCTAATCTATTGACCATAA+AGG + chr2_3:50556205-50556224 None:intergenic 30.0%
GGAGGAAAACTTCATATATA+AGG + chr2_3:50556234-50556253 None:intergenic 30.0%
ATGTATACATACATCTTTGG+GGG + chr2_3:50556275-50556294 None:intergenic 30.0%
CATGTATACATACATCTTTG+GGG + chr2_3:50556276-50556295 None:intergenic 30.0%
AGATGTATGTATACATGTAC+TGG - chr2_3:50556279-50556298 Msa0296980:intron 30.0%
GAGATATTTAGACAGATTCA+AGG + chr2_3:50556327-50556346 None:intergenic 30.0%
ATTTCGACTGTCCTATTTAA+TGG + chr2_3:50556405-50556424 None:intergenic 30.0%
!!! TATACTGTTGTTTTCCACAT+TGG - chr2_3:50556425-50556444 Msa0296980:intron 30.0%
TAAAAAATTATGGGTCACCT+TGG - chr2_3:50556473-50556492 Msa0296980:intron 30.0%
CAAAATCGCAAAGCTTAACT+TGG + chr2_3:50554354-50554373 None:intergenic 35.0%
! CAAGTTAAGCTTTGCGATTT+TGG - chr2_3:50554352-50554371 Msa0296980:three_prime_UTR 35.0%
!! AGGAGCATTCTAATGATCAA+CGG + chr2_3:50554485-50554504 None:intergenic 35.0%
CTCATGATAGGTAAACAGAA+TGG + chr2_3:50554602-50554621 None:intergenic 35.0%
TAAACCGGAAGGATATTAGT+TGG - chr2_3:50554630-50554649 Msa0296980:intron 35.0%
GGAGGACTAGAATTAAAATC+TGG + chr2_3:50554724-50554743 None:intergenic 35.0%
CGAAAAAAAATTAGGCAGCT+CGG + chr2_3:50554781-50554800 None:intergenic 35.0%
ACATATGTTCACGGTACTAT+CGG - chr2_3:50554874-50554893 Msa0296980:intron 35.0%
! TCGCACCAAATATTAGTTCT+GGG + chr2_3:50554902-50554921 None:intergenic 35.0%
TCCAACAAAGTTTAACAACC+TGG + chr2_3:50554989-50555008 None:intergenic 35.0%
TAATGCCTTGTCTATGTTGA+TGG - chr2_3:50555152-50555171 Msa0296980:intron 35.0%
! AAGGATGAGCTTTAATCTGA+GGG + chr2_3:50555296-50555315 None:intergenic 35.0%
!!! TTTCTGGGTGCTATTTTGTT+TGG - chr2_3:50555370-50555389 Msa0296980:intron 35.0%
!!! TTCTGGGTGCTATTTTGTTT+GGG - chr2_3:50555371-50555390 Msa0296980:intron 35.0%
CTTGTGAAAAACCTGAAACA+TGG + chr2_3:50555422-50555441 None:intergenic 35.0%
ACTTATGTGCCATCCTTAAT+AGG + chr2_3:50555560-50555579 None:intergenic 35.0%
! TGTAGTGTTTTTCACAATGG+GGG - chr2_3:50555647-50555666 Msa0296980:CDS 35.0%
!! ATGAGTTTGTTGATCAGTTC+GGG + chr2_3:50556062-50556081 None:intergenic 35.0%
!! GATGAGTTTGTTGATCAGTT+CGG + chr2_3:50556063-50556082 None:intergenic 35.0%
TCTTTACATTATGTGCTAGC+CGG + chr2_3:50556129-50556148 None:intergenic 35.0%
CCCTTTATGGTCAATAGATT+AGG - chr2_3:50556201-50556220 Msa0296980:intron 35.0%
TGGTCAATAGATTAGGATTC+AGG - chr2_3:50556208-50556227 Msa0296980:intron 35.0%
!!! TGTTGTTTTCCACATTGGTA+GGG - chr2_3:50556430-50556449 Msa0296980:intron 35.0%
CATTCTAATGATCAACGGCT+AGG + chr2_3:50554480-50554499 None:intergenic 40.0%
GCACTTATGGACAGATCTTA+AGG + chr2_3:50554505-50554524 None:intergenic 40.0%
TGTCAATGTTGCTATCAACC+TGG - chr2_3:50554574-50554593 Msa0296980:intron 40.0%
GAGATTGAGAATAAACCGGA+AGG - chr2_3:50554619-50554638 Msa0296980:intron 40.0%
AAAAAATTAGGCAGCTCGGT+TGG + chr2_3:50554777-50554796 None:intergenic 40.0%
CATATGTTCACGGTACTATC+GGG - chr2_3:50554875-50554894 Msa0296980:intron 40.0%
!! CGCACCAAATATTAGTTCTG+GGG + chr2_3:50554901-50554920 None:intergenic 40.0%
GTCGCACCAAATATTAGTTC+TGG + chr2_3:50554903-50554922 None:intergenic 40.0%
TCTATTGATATCTGGTCAGC+TGG - chr2_3:50554936-50554955 Msa0296980:intron 40.0%
GCCAGGTTGTTAAACTTTGT+TGG - chr2_3:50554985-50555004 Msa0296980:intron 40.0%
TTTCTTTAGCCATTGTTCCC+AGG - chr2_3:50555091-50555110 Msa0296980:CDS 40.0%
! TCTGTCTTGTTGTAGGTTCT+GGG - chr2_3:50555213-50555232 Msa0296980:intron 40.0%
CAACGAATTTCTTCTCGAGT+TGG + chr2_3:50555243-50555262 None:intergenic 40.0%
! CAAGGATGAGCTTTAATCTG+AGG + chr2_3:50555297-50555316 None:intergenic 40.0%
CTCAGATTAAAGCTCATCCT+TGG - chr2_3:50555295-50555314 Msa0296980:CDS 40.0%
TAAAGCTCATCCTTGGCATA+AGG - chr2_3:50555302-50555321 Msa0296980:CDS 40.0%
TATGCAACTACCTTATGCCA+AGG + chr2_3:50555315-50555334 None:intergenic 40.0%
CATAAGGTAGTTGCATACTC+TGG - chr2_3:50555318-50555337 Msa0296980:intron 40.0%
GGTTGAATGATCCATGTTTC+AGG - chr2_3:50555408-50555427 Msa0296980:CDS 40.0%
ATGCAAGGTCAATAGCTTCA+GGG + chr2_3:50555453-50555472 None:intergenic 40.0%
AAGCTATTGACCTTGCATCA+AGG - chr2_3:50555455-50555474 Msa0296980:intron 40.0%
ATTGAAGAAGCCTTGATGCA+AGG + chr2_3:50555468-50555487 None:intergenic 40.0%
ATGTGCCATCCTTAATAGGA+AGG + chr2_3:50555556-50555575 None:intergenic 40.0%
AAGGATGGCACATAAGTGTT+TGG - chr2_3:50555563-50555582 Msa0296980:intron 40.0%
! GTAGTGTTTTTCACAATGGG+GGG - chr2_3:50555648-50555667 Msa0296980:CDS 40.0%
! TAGTGTTTTTCACAATGGGG+GGG - chr2_3:50555649-50555668 Msa0296980:CDS 40.0%
TCTCGAAGCTCATCAAAGAA+AGG + chr2_3:50555752-50555771 None:intergenic 40.0%
GAACTATGACTGCAGTTATC+TGG - chr2_3:50556029-50556048 Msa0296980:intron 40.0%
!! TGAGTTTGTTGATCAGTTCG+GGG + chr2_3:50556061-50556080 None:intergenic 40.0%
CTTTACATTATGTGCTAGCC+GGG + chr2_3:50556128-50556147 None:intergenic 40.0%
TTAAACACAGGTCCCCTTTA+TGG - chr2_3:50556188-50556207 Msa0296980:intron 40.0%
!!! CTGTTGTTTTCCACATTGGT+AGG - chr2_3:50556429-50556448 Msa0296980:intron 40.0%
!! GTTGTTTTCCACATTGGTAG+GGG - chr2_3:50556431-50556450 Msa0296980:intron 40.0%
TGAGTGAGAGGATCAACCTA+TGG + chr2_3:50554331-50554350 None:intergenic 45.0%
! AGCTTAACTTGGTGAGTGAG+AGG + chr2_3:50554343-50554362 None:intergenic 45.0%
!! TTTTGGGAGCGCGAAAGTTT+TGG - chr2_3:50554369-50554388 Msa0296980:three_prime_UTR 45.0%
TAGGTAAACAGAATGGGTCC+AGG + chr2_3:50554595-50554614 None:intergenic 45.0%
GTCCTTGCAGAACTTCTTCT+AGG - chr2_3:50554963-50554982 Msa0296980:intron 45.0%
TGATTCTCTCCTGGGAACAA+TGG + chr2_3:50555103-50555122 None:intergenic 45.0%
ATTGTTCCCAGGAGAGAATC+AGG - chr2_3:50555102-50555121 Msa0296980:CDS 45.0%
AGGCACCATCAACATAGACA+AGG + chr2_3:50555160-50555179 None:intergenic 45.0%
! GTCTGTCTTGTTGTAGGTTC+TGG - chr2_3:50555212-50555231 Msa0296980:intron 45.0%
GTTTGGGTGATTGATGGAGT+TGG - chr2_3:50555387-50555406 Msa0296980:intron 45.0%
TGCAAGGTCAATAGCTTCAG+GGG + chr2_3:50555452-50555471 None:intergenic 45.0%
GATGCAAGGTCAATAGCTTC+AGG + chr2_3:50555454-50555473 None:intergenic 45.0%
GTTGCAGTGCTGTAAGTAGT+AGG - chr2_3:50555503-50555522 Msa0296980:intron 45.0%
AAGTTGAAAAGTGGAGGCAG+AGG + chr2_3:50555803-50555822 None:intergenic 45.0%
ATGTTGGAAACTGCGGTAGA+AGG - chr2_3:50555874-50555893 Msa0296980:intron 45.0%
AACATTGATCTTCTGCGGTG+AGG + chr2_3:50555908-50555927 None:intergenic 45.0%
!! GAGTTTGTTGATCAGTTCGG+GGG + chr2_3:50556060-50556079 None:intergenic 45.0%
TTATGTGCTAGCCGGGATAT+GGG + chr2_3:50556121-50556140 None:intergenic 45.0%
ATTATGTGCTAGCCGGGATA+TGG + chr2_3:50556122-50556141 None:intergenic 45.0%
! ACATACATCTTTGGGGGACA+GGG + chr2_3:50556269-50556288 None:intergenic 45.0%
! TACATACATCTTTGGGGGAC+AGG + chr2_3:50556270-50556289 None:intergenic 45.0%
TTTCCACATTGGTAGGGGTA+TGG - chr2_3:50556436-50556455 Msa0296980:intron 45.0%
CGGGCCCCAGAACTAATATT+TGG - chr2_3:50554894-50554913 Msa0296980:intron 50.0%
GGCCTAGAAGAAGTTCTGCA+AGG + chr2_3:50554968-50554987 None:intergenic 50.0%
TGCAGAACTTCTTCTAGGCC+AGG - chr2_3:50554968-50554987 Msa0296980:intron 50.0%
GAATCAGGTGGACCAACTTG+TGG - chr2_3:50555117-50555136 Msa0296980:intron 50.0%
! TCTGGCGTCTGTCTTGTTGT+AGG - chr2_3:50555206-50555225 Msa0296980:intron 50.0%
GCAAGGTCAATAGCTTCAGG+GGG + chr2_3:50555451-50555470 None:intergenic 50.0%
ACAGCACTGCAACGAAGACT+GGG + chr2_3:50555496-50555515 None:intergenic 50.0%
TACAGCACTGCAACGAAGAC+TGG + chr2_3:50555497-50555516 None:intergenic 50.0%
CCATTAGGAAGTCGGGCATT+GGG + chr2_3:50555776-50555795 None:intergenic 50.0%
ACCATTAGGAAGTCGGGCAT+TGG + chr2_3:50555777-50555796 None:intergenic 50.0%
AGGACGACCATTAGGAAGTC+GGG + chr2_3:50555783-50555802 None:intergenic 50.0%
GAGGACGACCATTAGGAAGT+CGG + chr2_3:50555784-50555803 None:intergenic 50.0%
TCCCAAACGCGCTTCATTGA+GGG - chr2_3:50555932-50555951 Msa0296980:intron 50.0%
TCCCTCAATGAAGCGCGTTT+GGG + chr2_3:50555936-50555955 None:intergenic 50.0%
TTCCCTCAATGAAGCGCGTT+TGG + chr2_3:50555937-50555956 None:intergenic 50.0%
AACTCATCCCAGAGCATGTC+AGG - chr2_3:50556075-50556094 Msa0296980:intron 50.0%
TAGCCATACCCCTACCAATG+TGG + chr2_3:50556442-50556461 None:intergenic 50.0%
GTTCCCAGGAGAGAATCAGG+TGG - chr2_3:50555105-50555124 Msa0296980:CDS 55.0%
GGTCCACCTGATTCTCTCCT+GGG + chr2_3:50555111-50555130 None:intergenic 55.0%
TGGTCCACCTGATTCTCTCC+TGG + chr2_3:50555112-50555131 None:intergenic 55.0%
CCCAATGCCCGACTTCCTAA+TGG - chr2_3:50555773-50555792 Msa0296980:intron 55.0%
ATCTTCTGCGGTGAGGACTG+AGG + chr2_3:50555901-50555920 None:intergenic 55.0%
GTCCCAAACGCGCTTCATTG+AGG - chr2_3:50555931-50555950 Msa0296980:intron 55.0%
TCATCCCAGAGCATGTCAGG+CGG - chr2_3:50556078-50556097 Msa0296980:intron 55.0%
GGTCTTGGCTTCCCATATCC+CGG - chr2_3:50556107-50556126 Msa0296980:intron 55.0%
ACAGGGTGATTGGGGTTTGG+AGG + chr2_3:50556252-50556271 None:intergenic 55.0%
TTTGGGGGACAGGGTGATTG+GGG + chr2_3:50556260-50556279 None:intergenic 55.0%
! CTTTGGGGGACAGGGTGATT+GGG + chr2_3:50556261-50556280 None:intergenic 55.0%
! TCTTTGGGGGACAGGGTGAT+TGG + chr2_3:50556262-50556281 None:intergenic 55.0%
GGAGGCAGAGGACGACCATT+AGG + chr2_3:50555791-50555810 None:intergenic 60.0%
TCTGCCGCCTGACATGCTCT+GGG + chr2_3:50556085-50556104 None:intergenic 60.0%
GGGACAGGGTGATTGGGGTT+TGG + chr2_3:50556255-50556274 None:intergenic 60.0%
GTCTGCCGCCTGACATGCTC+TGG + chr2_3:50556086-50556105 None:intergenic 65.0%
GAGCATGTCAGGCGGCAGAC+TGG - chr2_3:50556086-50556105 Msa0296980:intron 65.0%
!! GTCAGGCGGCAGACTGGTCT+TGG - chr2_3:50556092-50556111 Msa0296980:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 50554048 50556509 50554048 ID=Msa0296980;Name=Msa0296980
chr2_3 mRNA 50554048 50556509 50554048 ID=Msa0296980-mRNA-1;Parent=Msa0296980;Name=Msa0296980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.83|0.71|0.85|0.83|0.71|7|376|185
chr2_3 exon 50554048 50554513 50554048 ID=Msa0296980-mRNA-1:exon:15902;Parent=Msa0296980-mRNA-1
chr2_3 exon 50554725 50554826 50554725 ID=Msa0296980-mRNA-1:exon:15901;Parent=Msa0296980-mRNA-1
chr2_3 exon 50555044 50555127 50555044 ID=Msa0296980-mRNA-1:exon:15900;Parent=Msa0296980-mRNA-1
chr2_3 exon 50555234 50555329 50555234 ID=Msa0296980-mRNA-1:exon:15899;Parent=Msa0296980-mRNA-1
chr2_3 exon 50555407 50555457 50555407 ID=Msa0296980-mRNA-1:exon:15898;Parent=Msa0296980-mRNA-1
chr2_3 exon 50555568 50555695 50555568 ID=Msa0296980-mRNA-1:exon:15897;Parent=Msa0296980-mRNA-1
chr2_3 exon 50556503 50556509 50556503 ID=Msa0296980-mRNA-1:exon:15896;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50556503 50556509 50556503 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50555568 50555695 50555568 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50555407 50555457 50555407 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50555234 50555329 50555234 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50555044 50555127 50555044 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50554725 50554826 50554725 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 CDS 50554424 50554513 50554424 ID=Msa0296980-mRNA-1:cds;Parent=Msa0296980-mRNA-1
chr2_3 three_prime_UTR 50554048 50554423 50554048 ID=Msa0296980-mRNA-1:three_prime_utr;Parent=Msa0296980-mRNA-1
Gene Sequence

>Msa0296980

ATGGAAACGAACATTTCATACATATGTTCACGGTACTATCGGGCCCCAGAACTAATATTTGGTGCGACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCATTGTTCCCAGGAGAGAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTGGGTACTCCAACTCGAGAAGAAATTCGTTGTATGAACCCTAATTATACCGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCCCCTGAAGCTATTGACCTTGCATCAAGGCTTCTTCAATATTCACCCAGTCTTCGTTGCAGTGCTCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAGCCCAATGCCCGACTTCCTAATGGTCGTCCTCTGCCTCCACTTTTCAACTTTAAACAGGAATTATCTGGAGCATCCCCCGAACTGATCAACAAACTCATCCCAGAGCATGTCAGGCGGCAGACTGGTCTTGGCTTCCCATATCCCGGCTAG
Protein sequence

>Msa0296980

METNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINKLIPEHVRRQTGLGFPYPG*