AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129060 MtrunA17_Chr7g0273611 93.922 510 20 1 1 510 1 499 0.0 895
Msa1129060 MtrunA17_Chr2g0326721 67.553 188 55 1 1 188 1 182 2.58e-85 269
Msa1129060 MtrunA17_Chr4g0029001 66.489 188 57 1 1 188 1 182 2.83e-83 266
Msa1129060 MtrunA17_Chr6g0461131 43.575 179 87 4 1 176 158 325 1.26e-33 133
Msa1129060 MtrunA17_Chr3g0132821 37.725 167 98 2 1 161 16 182 1.75e-25 110
Msa1129060 MtrunA17_Chr3g0118941 30.000 180 113 1 7 186 113 279 1.06e-23 102
Msa1129060 MtrunA17_Chr6g0456181 50.000 122 54 1 32 153 2 116 2.54e-21 89.7
Msa1129060 MtrunA17_Chr3g0118921 35.948 153 89 3 3 155 50 193 5.30e-20 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129060 AT5G41070.1 66.146 192 52 1 1 192 1 179 2.23e-89 279
Msa1129060 AT3G26932.1 66.146 192 53 1 1 192 1 180 1.56e-88 276
Msa1129060 AT3G26932.2 66.146 192 53 1 1 192 1 180 1.56e-88 276
Msa1129060 AT2G28380.1 70.213 188 50 2 1 188 1 182 4.44e-85 270
Msa1129060 AT3G26932.3 57.273 110 35 1 83 192 25 122 3.54e-35 134
Msa1129060 AT3G62800.3 43.636 165 85 1 1 165 4 160 4.54e-34 131
Msa1129060 AT3G62800.2 43.636 165 85 1 1 165 4 160 7.01e-34 131
Msa1129060 AT3G62800.1 43.636 165 85 1 1 165 4 160 7.01e-34 131
Msa1129060 AT1G09700.2 38.182 165 99 3 1 163 15 178 2.28e-25 105
Msa1129060 AT1G09700.1 38.182 165 99 3 1 163 15 178 2.29e-24 105

Find 166 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGACCTCATTTGTCTT+TGG 0.147030 7_3:-80959720 None:intergenic
AAGGCAACCAACATATTATT+TGG 0.205227 7_3:-80959848 None:intergenic
TTGACCTACCCGTGTTTAAC+TGG 0.206547 7_3:-80959139 None:intergenic
TTGAGACCTCATTTGTCTTT+GGG 0.235703 7_3:-80959719 None:intergenic
TCGAACTACTACTATAATTT+AGG 0.260524 7_3:-80960014 None:intergenic
TTCTTCTTGTATCTCTCTAA+TGG 0.261124 7_3:-80959168 None:intergenic
ATTTGGTTTGAATAGTAAAA+TGG 0.270405 7_3:-80959110 None:intergenic
GACTGAACCTTCCTGTTTAT+AGG 0.281729 7_3:+80958288 Msa1129060:CDS
TATTGTACTGTTGAGATTGC+TGG 0.288844 7_3:+80958347 Msa1129060:CDS
TGCGGAGCGGGTGGAATAAT+TGG 0.307104 7_3:-80958972 None:intergenic
CTCTAATTTCTCGCCCGAAT+TGG 0.325035 7_3:+80958887 Msa1129060:CDS
TCAACAGTACAATAGAAGTT+AGG 0.331503 7_3:-80958338 None:intergenic
ATGAAAGTTTAGGAAGAAAC+TGG 0.343185 7_3:-80955932 None:intergenic
AGTATACAAGAATTTGCTTC+AGG 0.357086 7_3:+80958247 Msa1129060:CDS
CATTGCTAAAGTTGCAAACT+TGG 0.359333 7_3:-80959205 None:intergenic
TGATTCTGTCTCACATTCTC+TGG 0.366241 7_3:-80959251 None:intergenic
CTATGTTGATGATCACATTC+TGG 0.371431 7_3:-80958780 None:intergenic
AATGATGATAACTCTTTAGA+TGG 0.371804 7_3:-80959047 None:intergenic
CAGTAGTAGTAGAAATGAAC+TGG 0.377944 7_3:+80959289 Msa1129060:CDS
AACTGGGGTCCTACAAAATC+CGG 0.380281 7_3:+80959559 Msa1129060:CDS
AACTTTGGCAGCTAGAGTTC+TGG 0.387955 7_3:+80957035 Msa1129060:CDS
GCCTACTCCTCGATTCAATA+TGG 0.389139 7_3:+80959595 Msa1129060:CDS
AATCTGATGAAAAGCCAATT+CGG 0.394659 7_3:-80958901 None:intergenic
AGAGATCCCACCGATTTAAT+CGG 0.396276 7_3:+80959925 Msa1129060:three_prime_UTR
CCGTCCAAAAGCAATGAAAA+AGG 0.400134 7_3:+80959686 Msa1129060:CDS
AAGGTAACTGTCAACTTCAA+TGG 0.403268 7_3:+80956910 Msa1129060:CDS
TACCTCAGCTGCAGCATGTT+CGG 0.405856 7_3:-80956977 None:intergenic
GAATAGTAAAATGGAGGCCT+TGG 0.407381 7_3:-80959101 None:intergenic
GTTGCTCCAAGGTTGAGAAC+TGG 0.408470 7_3:+80959542 Msa1129060:CDS
GGTGTAGCAATAGAGAAATT+TGG 0.411272 7_3:-80959080 None:intergenic
ATAGAGAAATTTGGTCCTAC+AGG 0.412475 7_3:-80959071 None:intergenic
AAATAATATGTTGGTTGCCT+TGG 0.414003 7_3:+80959850 Msa1129060:three_prime_UTR
AAAGTAAGTGATGAAAGTTT+AGG 0.419536 7_3:-80955942 None:intergenic
GGATGTTTACAGGATGAAAC+AGG 0.422757 7_3:+80958224 Msa1129060:intron
TTGCTCCAAGGTTGAGAACT+GGG 0.423892 7_3:+80959543 Msa1129060:CDS
CAGAGGTCCCTCTAGAACTT+TGG 0.425326 7_3:+80957020 Msa1129060:CDS
ATCTGATGAAAAGCCAATTC+GGG 0.431532 7_3:-80958900 None:intergenic
TTTATATTTGAGAATGAAGA+AGG 0.431740 7_3:-80959762 None:intergenic
GTGTCAACCCAGCCAGCTCC+AGG 0.433500 7_3:+80958831 Msa1129060:CDS
TGTCTCACATTCTCTGGAGC+TGG 0.440216 7_3:-80959245 None:intergenic
TTTGAGCCAACTCTTGCAAC+CGG 0.448349 7_3:-80956822 None:intergenic
GCACGAATAGTCCTATAAAC+AGG 0.449589 7_3:-80958299 None:intergenic
CATTCTCTGGAGCTGGTGGT+TGG 0.452128 7_3:-80959238 None:intergenic
ATTCCCACACCCGATTAAAT+CGG 0.453495 7_3:-80959935 None:intergenic
AACCTTGGAGCAACAGCAAT+AGG 0.454403 7_3:-80959533 None:intergenic
TGAATGTGCTATGGCAATCC+TGG 0.459015 7_3:-80959402 None:intergenic
GTGTGTGAGGGAGCAGAGTT+AGG 0.460239 7_3:-80956008 None:intergenic
ACAAATTATGCAGCAAATGA+TGG 0.462694 7_3:+80958935 Msa1129060:CDS
GGATCTCTTGTCAAAGTTGG+AGG 0.463833 7_3:-80959910 None:intergenic
GGGTGGAATAATTGGTTGAA+TGG 0.464890 7_3:-80958964 None:intergenic
AATACATCCCTGGAGCTGGC+TGG 0.469048 7_3:-80958839 None:intergenic
TGACCTACCCGTGTTTAACT+GGG 0.470649 7_3:-80959138 None:intergenic
CTAAGAGTAGAGCAAAATGT+AGG 0.472284 7_3:-80956949 None:intergenic
CAGGAAACTGCCCACAGAGC+TGG 0.473496 7_3:+80958266 Msa1129060:CDS
CTCGGAGGAGCTGAGCAGAC+TGG 0.473989 7_3:-80959647 None:intergenic
CCCTTCACGAATGCATGAAT+AGG 0.478400 7_3:-80956866 None:intergenic
AAGAACATGTTATTATTGCT+CGG 0.478984 7_3:+80958718 Msa1129060:CDS
TGGATCACAGAATGCATTAG+AGG 0.481728 7_3:-80959002 None:intergenic
CAACAGTACAATAGAAGTTA+GGG 0.483863 7_3:-80958337 None:intergenic
AGAACATGTTATTATTGCTC+GGG 0.490547 7_3:+80958719 Msa1129060:CDS
CTGATCTGATTCTCACAGCT+GGG 0.491151 7_3:-80959619 None:intergenic
GTGGGATCTCTTGTCAAAGT+TGG 0.491681 7_3:-80959913 None:intergenic
TTGAAACGAGGAGCATGATC+TGG 0.492080 7_3:-80956889 None:intergenic
TCCGCTCACCATTACAAGTC+AGG 0.495676 7_3:-80959971 None:intergenic
AGATCATGCTCCTCGTTTCA+AGG 0.498116 7_3:+80956891 Msa1129060:CDS
ATACATCCCTGGAGCTGGCT+GGG 0.504600 7_3:-80958838 None:intergenic
ACTGATCTGATTCTCACAGC+TGG 0.507730 7_3:-80959620 None:intergenic
AATCTGAGTGGGATTCTCAT+AGG 0.508644 7_3:+80959330 Msa1129060:CDS
TTGAGCTGCAAAACCCATCC+AGG 0.509439 7_3:+80959384 Msa1129060:CDS
CTCTTGTCAAAGTTGGAGGT+TGG 0.509900 7_3:-80959906 None:intergenic
AATGTGATCATCAACATAGA+TGG 0.513779 7_3:+80958784 Msa1129060:CDS
GTGCAGACATGTATAAGAAC+CGG 0.514060 7_3:+80956803 Msa1129060:intron
AGAGGATAAATCTGCGGAGC+GGG 0.515001 7_3:-80958984 None:intergenic
TCAGGTAACCTGACTTGTAA+TGG 0.516393 7_3:+80959963 Msa1129060:three_prime_UTR
AAAGTCAACTACAACCTCAT+TGG 0.521394 7_3:+80958809 Msa1129060:CDS
CGGGTGTGGGAATTGAAGTC+AGG 0.522163 7_3:+80959945 Msa1129060:three_prime_UTR
CAAAGTTCTAGAGGGACCTC+TGG 0.522407 7_3:-80957019 None:intergenic
ATAGAATACATCCCTGGAGC+TGG 0.524733 7_3:-80958843 None:intergenic
GGCTCTGCCACGGACCTCCT+CGG 0.524963 7_3:-80959665 None:intergenic
AGGACTATTCGTGCTGGACC+AGG 0.526051 7_3:+80958308 Msa1129060:CDS
GCCTATTCATGCATTCGTGA+AGG 0.528501 7_3:+80956865 Msa1129060:CDS
TGGTGGTGTAAAACATCTAC+TGG 0.531346 7_3:-80959435 None:intergenic
AATTAGAGATTCCACAATGT+TGG 0.532278 7_3:-80958872 None:intergenic
GAGATCCCACCGATTTAATC+GGG 0.532872 7_3:+80959926 Msa1129060:three_prime_UTR
TATTCCACCGTGAGAACCAC+GGG 0.545062 7_3:+80959467 Msa1129060:CDS
TTAAAAGTTAAAACATGTAG+TGG 0.545673 7_3:+80959816 Msa1129060:three_prime_UTR
ATTGCTAAAGTTGCAAACTT+GGG 0.546115 7_3:-80959204 None:intergenic
GTTTATAGGACTATTCGTGC+TGG 0.546194 7_3:+80958302 Msa1129060:CDS
CAAGAACTAAGCTCTGAGCT+TGG 0.546259 7_3:+80959739 Msa1129060:three_prime_UTR
GGAAAATAGAGATAGCGATC+TGG 0.546278 7_3:-80959026 None:intergenic
TAAGAACCGGTTGCAAGAGT+TGG 0.547109 7_3:+80956816 Msa1129060:CDS
AAGGTTCAGTCCAGCTCTGT+GGG 0.548319 7_3:-80958276 None:intergenic
TCACGAATGCATGAATAGGC+TGG 0.549151 7_3:-80956862 None:intergenic
ACAAAGTTTGAAATCTGAGT+GGG 0.549256 7_3:+80959319 Msa1129060:CDS
AGGACCCCAGTTCTCAACCT+TGG 0.550405 7_3:-80959548 None:intergenic
TGGAACCAGTCGATGAAGTA+GGG 0.552032 7_3:-80959490 None:intergenic
GTGGAACCAGTCGATGAAGT+AGG 0.552063 7_3:-80959491 None:intergenic
ACGGGCCCTACTTCATCGAC+TGG 0.553849 7_3:+80959485 Msa1129060:CDS
TAGATGATTGTAAGCTTGCA+AGG 0.554943 7_3:-80958743 None:intergenic
AATAGAGATAGCGATCTGGC+TGG 0.555387 7_3:-80959022 None:intergenic
CTCACATTCTCTGGAGCTGG+TGG 0.556361 7_3:-80959242 None:intergenic
GGATAAATCTGCGGAGCGGG+TGG 0.557163 7_3:-80958981 None:intergenic
AACAAAGTTTGAAATCTGAG+TGG 0.557669 7_3:+80959318 Msa1129060:CDS
AGCTCCTCCGAGGAGGTCCG+TGG 0.558445 7_3:+80959658 Msa1129060:CDS
AAAATGCGGCAATAGCTGCT+TGG 0.561052 7_3:+80958417 Msa1129060:CDS
CCCACCGATTTAATCGGGTG+TGG 0.562939 7_3:+80959931 Msa1129060:three_prime_UTR
AAGTTAAAACATGTAGTGGT+AGG 0.564220 7_3:+80959820 Msa1129060:three_prime_UTR
TGGGATTCTCATAGGAGCAT+GGG 0.564651 7_3:+80959338 Msa1129060:CDS
GTAGGCGTTCTTACCATGCC+CGG 0.564896 7_3:-80959578 None:intergenic
TACCTATTGCTGTTGCTCCA+AGG 0.566613 7_3:+80959531 Msa1129060:CDS
CCTATTCATGCATTCGTGAA+GGG 0.575152 7_3:+80956866 Msa1129060:CDS
GGCCGAACATGCTGCAGCTG+AGG 0.577321 7_3:+80956975 Msa1129060:CDS
GGTCGTACCAAATAATATGT+TGG 0.578094 7_3:+80959841 Msa1129060:three_prime_UTR
GCCATATTGAATCGAGGAGT+AGG 0.583561 7_3:-80959596 None:intergenic
GCAAAATGTAGGGCTTTCAA+AGG 0.583603 7_3:-80956938 None:intergenic
GACCTACCCGTGTTTAACTG+GGG 0.583713 7_3:-80959137 None:intergenic
GAGTTATCATCATTCCCTGT+AGG 0.584039 7_3:+80959056 Msa1129060:CDS
TAAGAGTAGAGCAAAATGTA+GGG 0.584598 7_3:-80956948 None:intergenic
AGTAGGGCCCGTGGTTCTCA+CGG 0.584663 7_3:-80959474 None:intergenic
TATTGCATAGAATACATCCC+TGG 0.584956 7_3:-80958849 None:intergenic
TTGCAAGCTTACAATCATCT+AGG 0.586554 7_3:+80958745 Msa1129060:CDS
CCCACACCCGATTAAATCGG+TGG 0.587107 7_3:-80959932 None:intergenic
CCACCGATTTAATCGGGTGT+GGG 0.589037 7_3:+80959932 Msa1129060:three_prime_UTR
GTGGGATTCTCATAGGAGCA+TGG 0.589395 7_3:+80959337 Msa1129060:CDS
GTGCTATGGCAATCCTGGAT+GGG 0.589997 7_3:-80959397 None:intergenic
TACTTCTCTGCGCTGCACTG+TGG 0.592075 7_3:-80959510 None:intergenic
ACTGGGGTCCTACAAAATCC+GGG 0.595398 7_3:+80959560 Msa1129060:CDS
TGGTTTGAATAGTAAAATGG+AGG 0.602953 7_3:-80959107 None:intergenic
TCTAGCTGCCAAAGTTCTAG+AGG 0.604456 7_3:-80957028 None:intergenic
TGCTCCAAGGTTGAGAACTG+GGG 0.604742 7_3:+80959544 Msa1129060:CDS
ACCTACCCGTGTTTAACTGG+GGG 0.606494 7_3:-80959136 None:intergenic
TGTGCTATGGCAATCCTGGA+TGG 0.606670 7_3:-80959398 None:intergenic
GAGAATGTGAGACAGAATCA+TGG 0.608383 7_3:+80959254 Msa1129060:CDS
TAGAGAAATTTGGTCCTACA+GGG 0.608737 7_3:-80959070 None:intergenic
ACTTGCTTGTGAATGTGCTA+TGG 0.610090 7_3:-80959411 None:intergenic
AAAATCAAGAAAAGATTGCA+CGG 0.611432 7_3:+80960071 Msa1129060:three_prime_UTR
TCTGCTCAGCTCCTCCGAGG+AGG 0.614250 7_3:+80959651 Msa1129060:CDS
ACACACACAGATCCTTCAAG+AGG 0.614294 7_3:+80956027 Msa1129060:five_prime_UTR
GAAGGTTCAGTCCAGCTCTG+TGG 0.615639 7_3:-80958277 None:intergenic
ACCTGACTTGTAATGGTGAG+CGG 0.620164 7_3:+80959970 Msa1129060:three_prime_UTR
CCACACCCGATTAAATCGGT+GGG 0.629682 7_3:-80959931 None:intergenic
AGTAGTAGTAGAAATGAACT+GGG 0.633731 7_3:+80959290 Msa1129060:CDS
ACGGTGGAATATGAAGCTGC+TGG 0.634524 7_3:-80959455 None:intergenic
TCTATGCAATACCAACATTG+TGG 0.635542 7_3:+80958861 Msa1129060:CDS
CTAGCTGCCAAAGTTCTAGA+GGG 0.637615 7_3:-80957027 None:intergenic
ATATTCCACCGTGAGAACCA+CGG 0.642531 7_3:+80959466 Msa1129060:CDS
GGTCCTACAAAATCCGGGCA+TGG 0.643405 7_3:+80959565 Msa1129060:CDS
TTTAGACTCGGATGAAAACG+AGG 0.649330 7_3:-80958682 None:intergenic
TGTCAACCCAGCCAGCTCCA+GGG 0.649692 7_3:+80958832 Msa1129060:CDS
TAGAAGTTAGGGACATGACC+TGG 0.650876 7_3:-80958326 None:intergenic
CTCAACACACTCGCAACCAG+AGG 0.650995 7_3:+80957003 Msa1129060:CDS
GAATAGTCCTATAAACAGGA+AGG 0.657626 7_3:-80958295 None:intergenic
TGATCTGATTCTCACAGCTG+GGG 0.665907 7_3:-80959618 None:intergenic
TGCATTAGAGGATAAATCTG+CGG 0.666003 7_3:-80958990 None:intergenic
CAGTCTGCTCAGCTCCTCCG+AGG 0.666022 7_3:+80959648 Msa1129060:CDS
AGTCGATGAAGTAGGGCCCG+TGG 0.681008 7_3:-80959483 None:intergenic
ATTTCTCTATTGCTACACCA+AGG 0.685994 7_3:+80959084 Msa1129060:CDS
TCTGCCACGGACCTCCTCGG+AGG 0.696457 7_3:-80959662 None:intergenic
AGGGCCCGTGGTTCTCACGG+TGG 0.697174 7_3:-80959471 None:intergenic
GCTGGGGCCATATTGAATCG+AGG 0.699473 7_3:-80959602 None:intergenic
TAGAGGATAAATCTGCGGAG+CGG 0.702781 7_3:-80958985 None:intergenic
TTGACAGTTACCTTGAAACG+AGG 0.706991 7_3:-80956901 None:intergenic
AGTAGTAGAAATGAACTGGG+AGG 0.710901 7_3:+80959293 Msa1129060:CDS
GTGGAATATGAAGCTGCTGG+TGG 0.712096 7_3:-80959452 None:intergenic
TGGCTGGGTTGACACCAATG+AGG 0.755802 7_3:-80958823 None:intergenic
AATGTGAGACAGAATCATGG+CGG 0.781863 7_3:+80959257 Msa1129060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATATTCTATTGT+CGG - chr7_3:80957268-80957287 None:intergenic 10.0%
!!! AATGTTACTTTTAATATATA+GGG - chr7_3:80958195-80958214 None:intergenic 10.0%
!!! AAATGTTACTTTTAATATAT+AGG - chr7_3:80958196-80958215 None:intergenic 10.0%
! GGGGGCGGGGGGGGGGGGGG+GGG - chr7_3:80957914-80957933 None:intergenic 100.0%
! GGGGGGCGGGGGGGGGGGGG+GGG - chr7_3:80957915-80957934 None:intergenic 100.0%
! CGGGGGGCGGGGGGGGGGGG+GGG - chr7_3:80957916-80957935 None:intergenic 100.0%
! GCGGGGGGCGGGGGGGGGGG+GGG - chr7_3:80957917-80957936 None:intergenic 100.0%
!!! TTGTTTTGTTTTCTTAAATT+TGG + chr7_3:80956391-80956410 Msa1129060:intron 15.0%
!! AACAATACTAAATGAATATA+TGG - chr7_3:80956620-80956639 None:intergenic 15.0%
!!! GCTTTGTATTTTAAATTAAA+TGG + chr7_3:80957178-80957197 Msa1129060:intron 15.0%
!! GAATAATTGTTAAAAATAGA+CGG + chr7_3:80957200-80957219 Msa1129060:intron 15.0%
!!! AATAGAAGAATTTTAATATG+CGG - chr7_3:80957936-80957955 None:intergenic 15.0%
!!! AAAAGTAACATTTTATTGTT+TGG + chr7_3:80958203-80958222 Msa1129060:intron 15.0%
!! ACTGGAAATATATATATATA+AGG - chr7_3:80958488-80958507 None:intergenic 15.0%
!! TGTATCTGATTCAAAATTTA+TGG + chr7_3:80956308-80956327 Msa1129060:intron 20.0%
!! AAACTTCTGTTTAAACTATT+AGG - chr7_3:80956704-80956723 None:intergenic 20.0%
!!! ATTTTTGTTTACAGTGATAT+AGG + chr7_3:80957282-80957301 Msa1129060:intron 20.0%
!!! AGTTTTTTTTGAAGGAAAAA+GGG - chr7_3:80957650-80957669 None:intergenic 20.0%
!!! AAGTTTTTTTTGAAGGAAAA+AGG - chr7_3:80957651-80957670 None:intergenic 20.0%
!! ACTACAATAGATGATAAAAA+GGG - chr7_3:80957678-80957697 None:intergenic 20.0%
!! AACTACAATAGATGATAAAA+AGG - chr7_3:80957679-80957698 None:intergenic 20.0%
!! ACTATTAAATCTAATGATTC+AGG - chr7_3:80957732-80957751 None:intergenic 20.0%
!!! TTAATAGTTCTATATCCAAA+TGG + chr7_3:80957744-80957763 Msa1129060:intron 20.0%
!!! ATAGAAGAATTTTAATATGC+GGG - chr7_3:80957935-80957954 None:intergenic 20.0%
!! ACTACTCATGAATATATATT+AGG + chr7_3:80958121-80958140 Msa1129060:intron 20.0%
!! CTACTCATGAATATATATTA+GGG + chr7_3:80958122-80958141 Msa1129060:intron 20.0%
!! TTAATATATAGGGAAATAGT+TGG - chr7_3:80958185-80958204 None:intergenic 20.0%
!! GTCAAATCAAAAAGAATAAT+AGG - chr7_3:80958558-80958577 None:intergenic 20.0%
!!! ATTTGGTTTGAATAGTAAAA+TGG - chr7_3:80959113-80959132 None:intergenic 20.0%
!! TTTATATTTGAGAATGAAGA+AGG - chr7_3:80959765-80959784 None:intergenic 20.0%
!! TTAAAAGTTAAAACATGTAG+TGG + chr7_3:80959816-80959835 Msa1129060:three_prime_UTR 20.0%
!! ATCGTGAAAAAAAAATTACA+TGG + chr7_3:80960036-80960055 Msa1129060:three_prime_UTR 20.0%
!!! ATCTTTTCTTGATTTTATCA+GGG - chr7_3:80960067-80960086 None:intergenic 20.0%
!!! AATCTTTTCTTGATTTTATC+AGG - chr7_3:80960068-80960087 None:intergenic 20.0%
! AAAGTAAGTGATGAAAGTTT+AGG - chr7_3:80955945-80955964 None:intergenic 25.0%
! GAATTAAAAAAACCTCTTGA+AGG - chr7_3:80956042-80956061 None:intergenic 25.0%
!! AACAAAGTCCTTTTTATCTT+AGG + chr7_3:80956753-80956772 Msa1129060:intron 25.0%
! ATCAATTCATACCAAACAAT+GGG - chr7_3:80957126-80957145 None:intergenic 25.0%
! TATCAATTCATACCAAACAA+TGG - chr7_3:80957127-80957146 None:intergenic 25.0%
! TTGATATGAATTATGAAGTC+AGG + chr7_3:80957141-80957160 Msa1129060:intron 25.0%
! TGATATGAATTATGAAGTCA+GGG + chr7_3:80957142-80957161 Msa1129060:intron 25.0%
! AAACTTTATCTCATTAAGTG+GGG - chr7_3:80957345-80957364 None:intergenic 25.0%
! CAAACTTTATCTCATTAAGT+GGG - chr7_3:80957346-80957365 None:intergenic 25.0%
! CCTAAATGACAATGTATATT+TGG - chr7_3:80957562-80957581 None:intergenic 25.0%
!! CCAAATATACATTGTCATTT+AGG + chr7_3:80957559-80957578 Msa1129060:intron 25.0%
!!! GTATTTTTTTTACCAACATC+AGG - chr7_3:80957605-80957624 None:intergenic 25.0%
!!! TAGTTTGTAATTTTTCCTCA+AGG + chr7_3:80957694-80957713 Msa1129060:intron 25.0%
! ATTCTTCTATTCATTCCATT+TGG - chr7_3:80957762-80957781 None:intergenic 25.0%
!!! TACTAGATATTTTAGCTTGT+TGG + chr7_3:80957850-80957869 Msa1129060:intron 25.0%
!!! TAGAAGAATTTTAATATGCG+GGG - chr7_3:80957934-80957953 None:intergenic 25.0%
! ACTCTTATTGAAATTCAAGT+GGG + chr7_3:80958004-80958023 Msa1129060:intron 25.0%
! CATGAATATATATTAGGGAA+AGG + chr7_3:80958127-80958146 Msa1129060:intron 25.0%
! TTTATTGTTTGGATGTTTAC+AGG + chr7_3:80958214-80958233 Msa1129060:intron 25.0%
!!! CTTTTTGATTTGACATTATC+TGG + chr7_3:80958564-80958583 Msa1129060:intron 25.0%
! AAGAACATGTTATTATTGCT+CGG + chr7_3:80958718-80958737 Msa1129060:CDS 25.0%
! AATGATGATAACTCTTTAGA+TGG - chr7_3:80959050-80959069 None:intergenic 25.0%
!! TTTTGCAGCTCAATATTAAT+TGG - chr7_3:80959377-80959396 None:intergenic 25.0%
!!! TTTTGTTTACTTATCTACCA+AGG - chr7_3:80959870-80959889 None:intergenic 25.0%
! TCGAACTACTACTATAATTT+AGG - chr7_3:80960017-80960036 None:intergenic 25.0%
! AAAATCAAGAAAAGATTGCA+CGG + chr7_3:80960071-80960090 Msa1129060:three_prime_UTR 25.0%
ATGAAAGTTTAGGAAGAAAC+TGG - chr7_3:80955935-80955954 None:intergenic 30.0%
!! TTTCATCACTTACTTTTCTG+TGG + chr7_3:80955949-80955968 Msa1129060:five_prime_UTR 30.0%
!!! TGTTTTAACTGTCTCTTTGT+TGG + chr7_3:80956215-80956234 Msa1129060:intron 30.0%
!! ATTGTATGTTTTAAGCCGTT+GGG + chr7_3:80956461-80956480 Msa1129060:intron 30.0%
CATGATCTATAAAATCCCAA+CGG - chr7_3:80956479-80956498 None:intergenic 30.0%
ATGTTGAGAAAGAAATGTAG+AGG + chr7_3:80956550-80956569 Msa1129060:intron 30.0%
TAAGAGTAGAGCAAAATGTA+GGG - chr7_3:80956951-80956970 None:intergenic 30.0%
ATACAAGAACAGATGATCAT+AGG + chr7_3:80957092-80957111 Msa1129060:intron 30.0%
TACAAGAACAGATGATCATA+GGG + chr7_3:80957093-80957112 Msa1129060:intron 30.0%
GTTAAAAATAGACGGTTCAA+TGG + chr7_3:80957208-80957227 Msa1129060:intron 30.0%
!! CTATTGTCGGTTATTTTCAT+AGG - chr7_3:80957255-80957274 None:intergenic 30.0%
CCAAACTTTATCTCATTAAG+TGG - chr7_3:80957347-80957366 None:intergenic 30.0%
CCACTTAATGAGATAAAGTT+TGG + chr7_3:80957344-80957363 Msa1129060:intron 30.0%
GGTATAGTTCATGTAAAACT+GGG - chr7_3:80957474-80957493 None:intergenic 30.0%
AGGTATAGTTCATGTAAAAC+TGG - chr7_3:80957475-80957494 None:intergenic 30.0%
! AGTTTTACATGAACTATACC+TGG + chr7_3:80957474-80957493 Msa1129060:intron 30.0%
! ATTGTCATTTAGGTCTTTAC+TGG + chr7_3:80957569-80957588 Msa1129060:intron 30.0%
!!! GGGAACAAAGTTTTTTTTGA+AGG - chr7_3:80957658-80957677 None:intergenic 30.0%
!! AAAAGCACTATAATACACGA+GGG - chr7_3:80957809-80957828 None:intergenic 30.0%
! TGTTGGATTCAAGTGTTTTA+TGG + chr7_3:80957867-80957886 Msa1129060:intron 30.0%
!! AGAAGAATTTTAATATGCGG+GGG - chr7_3:80957933-80957952 None:intergenic 30.0%
ATTTCAATAAGAGTGAGTGT+GGG - chr7_3:80957998-80958017 None:intergenic 30.0%
AATTTCAATAAGAGTGAGTG+TGG - chr7_3:80957999-80958018 None:intergenic 30.0%
CACTCTTATTGAAATTCAAG+TGG + chr7_3:80958003-80958022 Msa1129060:intron 30.0%
TTAGGGAAAGGCTATATATT+CGG + chr7_3:80958139-80958158 Msa1129060:intron 30.0%
! AGTATACAAGAATTTGCTTC+AGG + chr7_3:80958247-80958266 Msa1129060:CDS 30.0%
CAACAGTACAATAGAAGTTA+GGG - chr7_3:80958340-80958359 None:intergenic 30.0%
TCAACAGTACAATAGAAGTT+AGG - chr7_3:80958341-80958360 None:intergenic 30.0%
!! ATTTTTCTGAGCCTGTTTTT+TGG - chr7_3:80958402-80958421 None:intergenic 30.0%
ATAGAATATAAAGCAAGTCC+CGG - chr7_3:80958608-80958627 None:intergenic 30.0%
!! TTCTTCATTGCTTTTAGACT+CGG - chr7_3:80958697-80958716 None:intergenic 30.0%
AGAACATGTTATTATTGCTC+GGG + chr7_3:80958719-80958738 Msa1129060:CDS 30.0%
AATGTGATCATCAACATAGA+TGG + chr7_3:80958784-80958803 Msa1129060:CDS 30.0%
AATTAGAGATTCCACAATGT+TGG - chr7_3:80958875-80958894 None:intergenic 30.0%
AATCTGATGAAAAGCCAATT+CGG - chr7_3:80958904-80958923 None:intergenic 30.0%
!!! AATTGGCTTTTCATCAGATT+TGG + chr7_3:80958904-80958923 Msa1129060:CDS 30.0%
ACAAATTATGCAGCAAATGA+TGG + chr7_3:80958935-80958954 Msa1129060:CDS 30.0%
TGGTTTGAATAGTAAAATGG+AGG - chr7_3:80959110-80959129 None:intergenic 30.0%
TTCTTCTTGTATCTCTCTAA+TGG - chr7_3:80959171-80959190 None:intergenic 30.0%
ATTGCTAAAGTTGCAAACTT+GGG - chr7_3:80959207-80959226 None:intergenic 30.0%
AGTAGTAGTAGAAATGAACT+GGG + chr7_3:80959290-80959309 Msa1129060:CDS 30.0%
! AACAAAGTTTGAAATCTGAG+TGG + chr7_3:80959318-80959337 Msa1129060:CDS 30.0%
! ACAAAGTTTGAAATCTGAGT+GGG + chr7_3:80959319-80959338 Msa1129060:CDS 30.0%
!! AACTCCTTTTTCATTGCTTT+TGG - chr7_3:80959693-80959712 None:intergenic 30.0%
TAAAAACCCAAAGACAAATG+AGG + chr7_3:80959713-80959732 Msa1129060:exon 30.0%
AAGTTAAAACATGTAGTGGT+AGG + chr7_3:80959820-80959839 Msa1129060:three_prime_UTR 30.0%
AAGGCAACCAACATATTATT+TGG - chr7_3:80959851-80959870 None:intergenic 30.0%
! AAATAATATGTTGGTTGCCT+TGG + chr7_3:80959850-80959869 Msa1129060:three_prime_UTR 30.0%
! AAGTAAAAGAGCATAAAGCG+TGG - chr7_3:80956069-80956088 None:intergenic 35.0%
CAGATACATCAACTCAAATG+TGG - chr7_3:80956296-80956315 None:intergenic 35.0%
!! CATTGTATGTTTTAAGCCGT+TGG + chr7_3:80956460-80956479 Msa1129060:intron 35.0%
GTATCCATTTATTACCGTAC+CGG + chr7_3:80956647-80956666 Msa1129060:intron 35.0%
TATCCATTTATTACCGTACC+GGG + chr7_3:80956648-80956667 Msa1129060:intron 35.0%
AAGGTAACTGTCAACTTCAA+TGG + chr7_3:80956910-80956929 Msa1129060:CDS 35.0%
CTAAGAGTAGAGCAAAATGT+AGG - chr7_3:80956952-80956971 None:intergenic 35.0%
! ATTTTGCTCTACTCTTAGAC+AGG + chr7_3:80956954-80956973 Msa1129060:CDS 35.0%
TGGATCAAATGACGTCATAA+TGG - chr7_3:80957313-80957332 None:intergenic 35.0%
! AGGCATCTTTTAAATCCTTG+AGG - chr7_3:80957712-80957731 None:intergenic 35.0%
! AAAGCACTATAATACACGAG+GGG - chr7_3:80957808-80957827 None:intergenic 35.0%
!! GAAAAGCACTATAATACACG+AGG - chr7_3:80957810-80957829 None:intergenic 35.0%
!! GAAGAATTTTAATATGCGGG+GGG - chr7_3:80957932-80957951 None:intergenic 35.0%
TGGGTTTCATCACTTTATGT+GGG - chr7_3:80958045-80958064 None:intergenic 35.0%
ATTGGCTGTGAAATTCATGT+GGG - chr7_3:80958064-80958083 None:intergenic 35.0%
! TATTGGCTGTGAAATTCATG+TGG - chr7_3:80958065-80958084 None:intergenic 35.0%
TCCAACACTCATTCTCTTAT+TGG - chr7_3:80958082-80958101 None:intergenic 35.0%
TAGGGAAAGGCTATATATTC+GGG + chr7_3:80958140-80958159 Msa1129060:intron 35.0%
GAATAGTCCTATAAACAGGA+AGG - chr7_3:80958298-80958317 None:intergenic 35.0%
TATTGTACTGTTGAGATTGC+TGG + chr7_3:80958347-80958366 Msa1129060:CDS 35.0%
! ATTGCTGGAATGCATTTTAC+TGG + chr7_3:80958362-80958381 Msa1129060:CDS 35.0%
AAAACAGGCTCAGAAAAATG+CGG + chr7_3:80958403-80958422 Msa1129060:CDS 35.0%
! GAGAAAATGTGAGCATTTTG+CGG + chr7_3:80958448-80958467 Msa1129060:intron 35.0%
ATATTTCCAGTTCAGAGTCA+TGG + chr7_3:80958497-80958516 Msa1129060:intron 35.0%
! GCTTATGCTTCTTTTCTTTC+CGG + chr7_3:80958586-80958605 Msa1129060:intron 35.0%
! CTTATGCTTCTTTTCTTTCC+GGG + chr7_3:80958587-80958606 Msa1129060:intron 35.0%
TAGATGATTGTAAGCTTGCA+AGG - chr7_3:80958746-80958765 None:intergenic 35.0%
TTGCAAGCTTACAATCATCT+AGG + chr7_3:80958745-80958764 Msa1129060:CDS 35.0%
!! CTATGTTGATGATCACATTC+TGG - chr7_3:80958783-80958802 None:intergenic 35.0%
AAAGTCAACTACAACCTCAT+TGG + chr7_3:80958809-80958828 Msa1129060:CDS 35.0%
TATTGCATAGAATACATCCC+TGG - chr7_3:80958852-80958871 None:intergenic 35.0%
TCTATGCAATACCAACATTG+TGG + chr7_3:80958861-80958880 Msa1129060:CDS 35.0%
ATCTGATGAAAAGCCAATTC+GGG - chr7_3:80958903-80958922 None:intergenic 35.0%
TGCATTAGAGGATAAATCTG+CGG - chr7_3:80958993-80959012 None:intergenic 35.0%
TAGAGAAATTTGGTCCTACA+GGG - chr7_3:80959073-80959092 None:intergenic 35.0%
ATAGAGAAATTTGGTCCTAC+AGG - chr7_3:80959074-80959093 None:intergenic 35.0%
GGTGTAGCAATAGAGAAATT+TGG - chr7_3:80959083-80959102 None:intergenic 35.0%
ATTTCTCTATTGCTACACCA+AGG + chr7_3:80959084-80959103 Msa1129060:CDS 35.0%
CATTGCTAAAGTTGCAAACT+TGG - chr7_3:80959208-80959227 None:intergenic 35.0%
CAGTAGTAGTAGAAATGAAC+TGG + chr7_3:80959289-80959308 Msa1129060:CDS 35.0%
!! CCTTTTTCATTGCTTTTGGA+CGG - chr7_3:80959689-80959708 None:intergenic 35.0%
TTGAGACCTCATTTGTCTTT+GGG - chr7_3:80959722-80959741 None:intergenic 35.0%
GGTCGTACCAAATAATATGT+TGG + chr7_3:80959841-80959860 Msa1129060:three_prime_UTR 35.0%
! AAAGAGCATAAAGCGTGGAA+TGG - chr7_3:80956064-80956083 None:intergenic 40.0%
ACATCAACTCAAATGTGGAC+CGG - chr7_3:80956291-80956310 None:intergenic 40.0%
AGTTGCCTGCATAGAATGTT+AGG + chr7_3:80956500-80956519 Msa1129060:intron 40.0%
AGCAACCTAACATTCTATGC+AGG - chr7_3:80956508-80956527 None:intergenic 40.0%
ATCCATTTATTACCGTACCG+GGG + chr7_3:80956649-80956668 Msa1129060:intron 40.0%
! TCCTTTTTATCTTAGGCTGC+TGG + chr7_3:80956760-80956779 Msa1129060:intron 40.0%
GTGCAGACATGTATAAGAAC+CGG + chr7_3:80956803-80956822 Msa1129060:intron 40.0%
CCTATTCATGCATTCGTGAA+GGG + chr7_3:80956866-80956885 Msa1129060:CDS 40.0%
TTGACAGTTACCTTGAAACG+AGG - chr7_3:80956904-80956923 None:intergenic 40.0%
GCAAAATGTAGGGCTTTCAA+AGG - chr7_3:80956941-80956960 None:intergenic 40.0%
GAACAGATGATCATAGGGTT+AGG + chr7_3:80957098-80957117 Msa1129060:intron 40.0%
ACGTCATTTGATCCATGTAG+CGG + chr7_3:80957318-80957337 Msa1129060:intron 40.0%
! GGACTTTTCAATCCTGATGT+TGG + chr7_3:80957590-80957609 Msa1129060:intron 40.0%
TTTATGTGGGGCCAAAATCA+TGG - chr7_3:80958032-80958051 None:intergenic 40.0%
GGGTTTCATCACTTTATGTG+GGG - chr7_3:80958044-80958063 None:intergenic 40.0%
GTGGGTTTCATCACTTTATG+TGG - chr7_3:80958046-80958065 None:intergenic 40.0%
GCCAATAAGAGAATGAGTGT+TGG + chr7_3:80958078-80958097 Msa1129060:intron 40.0%
!! AGAATGAGTGTTGGAAAGAG+TGG + chr7_3:80958087-80958106 Msa1129060:intron 40.0%
!! GAATGAGTGTTGGAAAGAGT+GGG + chr7_3:80958088-80958107 Msa1129060:intron 40.0%
GGATGTTTACAGGATGAAAC+AGG + chr7_3:80958224-80958243 Msa1129060:intron 40.0%
GACTGAACCTTCCTGTTTAT+AGG + chr7_3:80958288-80958307 Msa1129060:CDS 40.0%
GCACGAATAGTCCTATAAAC+AGG - chr7_3:80958302-80958321 None:intergenic 40.0%
GTTTATAGGACTATTCGTGC+TGG + chr7_3:80958302-80958321 Msa1129060:CDS 40.0%
TACTATCCATGACTCTGAAC+TGG - chr7_3:80958506-80958525 None:intergenic 40.0%
! GATAACTGATTCTCTGACAC+TGG - chr7_3:80958648-80958667 None:intergenic 40.0%
TTTAGACTCGGATGAAAACG+AGG - chr7_3:80958685-80958704 None:intergenic 40.0%
GGGTGGAATAATTGGTTGAA+TGG - chr7_3:80958967-80958986 None:intergenic 40.0%
TGGATCACAGAATGCATTAG+AGG - chr7_3:80959005-80959024 None:intergenic 40.0%
GGAAAATAGAGATAGCGATC+TGG - chr7_3:80959029-80959048 None:intergenic 40.0%
GAGTTATCATCATTCCCTGT+AGG + chr7_3:80959056-80959075 Msa1129060:CDS 40.0%
GAATAGTAAAATGGAGGCCT+TGG - chr7_3:80959104-80959123 None:intergenic 40.0%
TGTTTAACTGGGGGACAATT+TGG - chr7_3:80959130-80959149 None:intergenic 40.0%
AATTGTCCCCCAGTTAAACA+CGG + chr7_3:80959130-80959149 Msa1129060:CDS 40.0%
TGATTCTGTCTCACATTCTC+TGG - chr7_3:80959254-80959273 None:intergenic 40.0%
GAGAATGTGAGACAGAATCA+TGG + chr7_3:80959254-80959273 Msa1129060:CDS 40.0%
AATGTGAGACAGAATCATGG+CGG + chr7_3:80959257-80959276 Msa1129060:CDS 40.0%
AGTAGTAGAAATGAACTGGG+AGG + chr7_3:80959293-80959312 Msa1129060:CDS 40.0%
AATCTGAGTGGGATTCTCAT+AGG + chr7_3:80959330-80959349 Msa1129060:CDS 40.0%
ACTTGCTTGTGAATGTGCTA+TGG - chr7_3:80959414-80959433 None:intergenic 40.0%
! TGGTGGTGTAAAACATCTAC+TGG - chr7_3:80959438-80959457 None:intergenic 40.0%
CCGTCCAAAAGCAATGAAAA+AGG + chr7_3:80959686-80959705 Msa1129060:CDS 40.0%
CTTGAGACCTCATTTGTCTT+TGG - chr7_3:80959723-80959742 None:intergenic 40.0%
!! AGAGATCCCACCGATTTAAT+CGG + chr7_3:80959925-80959944 Msa1129060:three_prime_UTR 40.0%
ATTCCCACACCCGATTAAAT+CGG - chr7_3:80959938-80959957 None:intergenic 40.0%
! TCAGGTAACCTGACTTGTAA+TGG + chr7_3:80959963-80959982 Msa1129060:three_prime_UTR 40.0%
AAGGATCTGTGTGTGTGTGA+GGG - chr7_3:80956023-80956042 None:intergenic 45.0%
ACACACACAGATCCTTCAAG+AGG + chr7_3:80956027-80956046 Msa1129060:five_prime_UTR 45.0%
CGAGTTTATTACACCCTCTC+CGG + chr7_3:80956269-80956288 Msa1129060:intron 45.0%
TACCCCGGTACGGTAATAAA+TGG - chr7_3:80956654-80956673 None:intergenic 45.0%
GCCAGCAGCCTAAGATAAAA+AGG - chr7_3:80956764-80956783 None:intergenic 45.0%
TAAGAACCGGTTGCAAGAGT+TGG + chr7_3:80956816-80956835 Msa1129060:CDS 45.0%
TTTGAGCCAACTCTTGCAAC+CGG - chr7_3:80956825-80956844 None:intergenic 45.0%
TCACGAATGCATGAATAGGC+TGG - chr7_3:80956865-80956884 None:intergenic 45.0%
GCCTATTCATGCATTCGTGA+AGG + chr7_3:80956865-80956884 Msa1129060:CDS 45.0%
CCCTTCACGAATGCATGAAT+AGG - chr7_3:80956869-80956888 None:intergenic 45.0%
! TTGAAACGAGGAGCATGATC+TGG - chr7_3:80956892-80956911 None:intergenic 45.0%
AGATCATGCTCCTCGTTTCA+AGG + chr7_3:80956891-80956910 Msa1129060:CDS 45.0%
!! CTAGCTGCCAAAGTTCTAGA+GGG - chr7_3:80957030-80957049 None:intergenic 45.0%
! TCTAGCTGCCAAAGTTCTAG+AGG - chr7_3:80957031-80957050 None:intergenic 45.0%
AACTTTGGCAGCTAGAGTTC+TGG + chr7_3:80957035-80957054 Msa1129060:CDS 45.0%
AGGGTTAGGATCCCATTGTT+TGG + chr7_3:80957112-80957131 Msa1129060:intron 45.0%
GAGAAAGTGGTACATTGACC+AGG - chr7_3:80957495-80957514 None:intergenic 45.0%
ATGTACCACTTTCTCTCTGC+TGG + chr7_3:80957500-80957519 Msa1129060:intron 45.0%
TGTACCACTTTCTCTCTGCT+GGG + chr7_3:80957501-80957520 Msa1129060:intron 45.0%
! TATTTGGCCTTCGTGTTGTC+TGG - chr7_3:80957546-80957565 None:intergenic 45.0%
!! AATTTTAATATGCGGGGGGC+GGG - chr7_3:80957928-80957947 None:intergenic 45.0%
!! GAATTTTAATATGCGGGGGG+CGG - chr7_3:80957929-80957948 None:intergenic 45.0%
!! TCAAGTGGGTGCCATGATTT+TGG + chr7_3:80958018-80958037 Msa1129060:intron 45.0%
TTCGGGAAATGCACTACTCT+TGG + chr7_3:80958157-80958176 Msa1129060:intron 45.0%
TCGGGAAATGCACTACTCTT+GGG + chr7_3:80958158-80958177 Msa1129060:intron 45.0%
TAGAAGTTAGGGACATGACC+TGG - chr7_3:80958329-80958348 None:intergenic 45.0%
! ATTTTACTGGAGACCCAGCT+AGG + chr7_3:80958375-80958394 Msa1129060:CDS 45.0%
!!! CCTGTTTTTTGGTCCTAGCT+GGG - chr7_3:80958391-80958410 None:intergenic 45.0%
AAAATGCGGCAATAGCTGCT+TGG + chr7_3:80958417-80958436 Msa1129060:CDS 45.0%
ATAGAATACATCCCTGGAGC+TGG - chr7_3:80958846-80958865 None:intergenic 45.0%
CTCTAATTTCTCGCCCGAAT+TGG + chr7_3:80958887-80958906 Msa1129060:CDS 45.0%
TAGAGGATAAATCTGCGGAG+CGG - chr7_3:80958988-80959007 None:intergenic 45.0%
AATAGAGATAGCGATCTGGC+TGG - chr7_3:80959025-80959044 None:intergenic 45.0%
ATTGTCCCCCAGTTAAACAC+GGG + chr7_3:80959131-80959150 Msa1129060:CDS 45.0%
TGACCTACCCGTGTTTAACT+GGG - chr7_3:80959141-80959160 None:intergenic 45.0%
TTGACCTACCCGTGTTTAAC+TGG - chr7_3:80959142-80959161 None:intergenic 45.0%
! TGGGATTCTCATAGGAGCAT+GGG + chr7_3:80959338-80959357 Msa1129060:CDS 45.0%
TGAATGTGCTATGGCAATCC+TGG - chr7_3:80959405-80959424 None:intergenic 45.0%
ATATTCCACCGTGAGAACCA+CGG + chr7_3:80959466-80959485 Msa1129060:CDS 45.0%
TGGAACCAGTCGATGAAGTA+GGG - chr7_3:80959493-80959512 None:intergenic 45.0%
! TACCTATTGCTGTTGCTCCA+AGG + chr7_3:80959531-80959550 Msa1129060:CDS 45.0%
AACCTTGGAGCAACAGCAAT+AGG - chr7_3:80959536-80959555 None:intergenic 45.0%
TTGCTCCAAGGTTGAGAACT+GGG + chr7_3:80959543-80959562 Msa1129060:CDS 45.0%
AACTGGGGTCCTACAAAATC+CGG + chr7_3:80959559-80959578 Msa1129060:CDS 45.0%
! TTACCATGCCCGGATTTTGT+AGG - chr7_3:80959571-80959590 None:intergenic 45.0%
GCCTACTCCTCGATTCAATA+TGG + chr7_3:80959595-80959614 Msa1129060:CDS 45.0%
GCCATATTGAATCGAGGAGT+AGG - chr7_3:80959599-80959618 None:intergenic 45.0%
TGATCTGATTCTCACAGCTG+GGG - chr7_3:80959621-80959640 None:intergenic 45.0%
CTGATCTGATTCTCACAGCT+GGG - chr7_3:80959622-80959641 None:intergenic 45.0%
ACTGATCTGATTCTCACAGC+TGG - chr7_3:80959623-80959642 None:intergenic 45.0%
!! CAAGAACTAAGCTCTGAGCT+TGG + chr7_3:80959739-80959758 Msa1129060:three_prime_UTR 45.0%
CTCTTGTCAAAGTTGGAGGT+TGG - chr7_3:80959909-80959928 None:intergenic 45.0%
GGATCTCTTGTCAAAGTTGG+AGG - chr7_3:80959913-80959932 None:intergenic 45.0%
GTGGGATCTCTTGTCAAAGT+TGG - chr7_3:80959916-80959935 None:intergenic 45.0%
!! GAGATCCCACCGATTTAATC+GGG + chr7_3:80959926-80959945 Msa1129060:three_prime_UTR 45.0%
! ACCTGACTTGTAATGGTGAG+CGG + chr7_3:80959970-80959989 Msa1129060:three_prime_UTR 45.0%
GAAGGATCTGTGTGTGTGTG+AGG - chr7_3:80956024-80956043 None:intergenic 50.0%
ACTCAAATGTGGACCGGAGA+GGG - chr7_3:80956285-80956304 None:intergenic 50.0%
AACTCAAATGTGGACCGGAG+AGG - chr7_3:80956286-80956305 None:intergenic 50.0%
CAACAGATTCTACCCCGGTA+CGG - chr7_3:80956664-80956683 None:intergenic 50.0%
TACCTCAGCTGCAGCATGTT+CGG - chr7_3:80956980-80956999 None:intergenic 50.0%
!! CAAAGTTCTAGAGGGACCTC+TGG - chr7_3:80957022-80957041 None:intergenic 50.0%
!! CAGAGGTCCCTCTAGAACTT+TGG + chr7_3:80957020-80957039 Msa1129060:CDS 50.0%
ATTAAGTGGGGTCCGCTACA+TGG - chr7_3:80957333-80957352 None:intergenic 50.0%
TTAGCCCAGCAGAGAGAAAG+TGG - chr7_3:80957508-80957527 None:intergenic 50.0%
CCTTCGTGTTGTCTGGTTAC+TGG - chr7_3:80957539-80957558 None:intergenic 50.0%
CCAGTAACCAGACAACACGA+AGG + chr7_3:80957536-80957555 Msa1129060:intron 50.0%
!! ATTTTAATATGCGGGGGGCG+GGG - chr7_3:80957927-80957946 None:intergenic 50.0%
AAGGTTCAGTCCAGCTCTGT+GGG - chr7_3:80958279-80958298 None:intergenic 50.0%
CCCAGCTAGGACCAAAAAAC+AGG + chr7_3:80958388-80958407 Msa1129060:CDS 50.0%
!!! GCCTGTTTTTTGGTCCTAGC+TGG - chr7_3:80958392-80958411 None:intergenic 50.0%
AGAGGATAAATCTGCGGAGC+GGG - chr7_3:80958987-80959006 None:intergenic 50.0%
ACCTACCCGTGTTTAACTGG+GGG - chr7_3:80959139-80959158 None:intergenic 50.0%
GACCTACCCGTGTTTAACTG+GGG - chr7_3:80959140-80959159 None:intergenic 50.0%
!! TGTCTCACATTCTCTGGAGC+TGG - chr7_3:80959248-80959267 None:intergenic 50.0%
GTGGGATTCTCATAGGAGCA+TGG + chr7_3:80959337-80959356 Msa1129060:CDS 50.0%
TTGAGCTGCAAAACCCATCC+AGG + chr7_3:80959384-80959403 Msa1129060:CDS 50.0%
GTGCTATGGCAATCCTGGAT+GGG - chr7_3:80959400-80959419 None:intergenic 50.0%
TGTGCTATGGCAATCCTGGA+TGG - chr7_3:80959401-80959420 None:intergenic 50.0%
GTGGAATATGAAGCTGCTGG+TGG - chr7_3:80959455-80959474 None:intergenic 50.0%
ACGGTGGAATATGAAGCTGC+TGG - chr7_3:80959458-80959477 None:intergenic 50.0%
TATTCCACCGTGAGAACCAC+GGG + chr7_3:80959467-80959486 Msa1129060:CDS 50.0%
GTGGAACCAGTCGATGAAGT+AGG - chr7_3:80959494-80959513 None:intergenic 50.0%
GTTGCTCCAAGGTTGAGAAC+TGG + chr7_3:80959542-80959561 Msa1129060:CDS 50.0%
TGCTCCAAGGTTGAGAACTG+GGG + chr7_3:80959544-80959563 Msa1129060:CDS 50.0%
ACTGGGGTCCTACAAAATCC+GGG + chr7_3:80959560-80959579 Msa1129060:CDS 50.0%
CCACACCCGATTAAATCGGT+GGG - chr7_3:80959934-80959953 None:intergenic 50.0%
!! CCACCGATTTAATCGGGTGT+GGG + chr7_3:80959932-80959951 Msa1129060:three_prime_UTR 50.0%
TCCGCTCACCATTACAAGTC+AGG - chr7_3:80959974-80959993 None:intergenic 50.0%
GTGTGTGAGGGAGCAGAGTT+AGG - chr7_3:80956011-80956030 None:intergenic 55.0%
ACCGGGGTAGAATCTGTTGC+AGG + chr7_3:80956665-80956684 Msa1129060:intron 55.0%
CCCTGCAACAGATTCTACCC+CGG - chr7_3:80956669-80956688 None:intergenic 55.0%
CCGGGGTAGAATCTGTTGCA+GGG + chr7_3:80956666-80956685 Msa1129060:intron 55.0%
CTCAACACACTCGCAACCAG+AGG + chr7_3:80957003-80957022 Msa1129060:CDS 55.0%
! TTTTAATATGCGGGGGGCGG+GGG - chr7_3:80957926-80957945 None:intergenic 55.0%
GAAGGTTCAGTCCAGCTCTG+TGG - chr7_3:80958280-80958299 None:intergenic 55.0%
AGGACTATTCGTGCTGGACC+AGG + chr7_3:80958308-80958327 Msa1129060:CDS 55.0%
! TGGCTGGGTTGACACCAATG+AGG - chr7_3:80958826-80958845 None:intergenic 55.0%
ATACATCCCTGGAGCTGGCT+GGG - chr7_3:80958841-80958860 None:intergenic 55.0%
AATACATCCCTGGAGCTGGC+TGG - chr7_3:80958842-80958861 None:intergenic 55.0%
TGCGGAGCGGGTGGAATAAT+TGG - chr7_3:80958975-80958994 None:intergenic 55.0%
TCCCCCAGTTAAACACGGGT+AGG + chr7_3:80959135-80959154 Msa1129060:CDS 55.0%
!! CATTCTCTGGAGCTGGTGGT+TGG - chr7_3:80959241-80959260 None:intergenic 55.0%
!! CTCACATTCTCTGGAGCTGG+TGG - chr7_3:80959245-80959264 None:intergenic 55.0%
TACTTCTCTGCGCTGCACTG+TGG - chr7_3:80959513-80959532 None:intergenic 55.0%
AGGACCCCAGTTCTCAACCT+TGG - chr7_3:80959551-80959570 None:intergenic 55.0%
GGTCCTACAAAATCCGGGCA+TGG + chr7_3:80959565-80959584 Msa1129060:CDS 55.0%
GTAGGCGTTCTTACCATGCC+CGG - chr7_3:80959581-80959600 None:intergenic 55.0%
GCTGGGGCCATATTGAATCG+AGG - chr7_3:80959605-80959624 None:intergenic 55.0%
!! CCCACCGATTTAATCGGGTG+TGG + chr7_3:80959931-80959950 Msa1129060:three_prime_UTR 55.0%
CCCACACCCGATTAAATCGG+TGG - chr7_3:80959935-80959954 None:intergenic 55.0%
CGGGTGTGGGAATTGAAGTC+AGG + chr7_3:80959945-80959964 Msa1129060:three_prime_UTR 55.0%
TTTAATATGCGGGGGGCGGG+GGG - chr7_3:80957925-80957944 None:intergenic 60.0%
CAGGAAACTGCCCACAGAGC+TGG + chr7_3:80958266-80958285 Msa1129060:CDS 60.0%
TGTCAACCCAGCCAGCTCCA+GGG + chr7_3:80958832-80958851 Msa1129060:CDS 60.0%
GGATAAATCTGCGGAGCGGG+TGG - chr7_3:80958984-80959003 None:intergenic 60.0%
AGTAGGGCCCGTGGTTCTCA+CGG - chr7_3:80959477-80959496 None:intergenic 60.0%
AGTCGATGAAGTAGGGCCCG+TGG - chr7_3:80959486-80959505 None:intergenic 60.0%
ACGGGCCCTACTTCATCGAC+TGG + chr7_3:80959485-80959504 Msa1129060:CDS 60.0%
! GCTTTTGGACGGCTCTGCCA+CGG - chr7_3:80959678-80959697 None:intergenic 60.0%
GGCCGAACATGCTGCAGCTG+AGG + chr7_3:80956975-80956994 Msa1129060:CDS 65.0%
TTAATATGCGGGGGGCGGGG+GGG - chr7_3:80957924-80957943 None:intergenic 65.0%
GTGTCAACCCAGCCAGCTCC+AGG + chr7_3:80958831-80958850 Msa1129060:CDS 65.0%
CTCGGAGGAGCTGAGCAGAC+TGG - chr7_3:80959650-80959669 None:intergenic 65.0%
CAGTCTGCTCAGCTCCTCCG+AGG + chr7_3:80959648-80959667 Msa1129060:CDS 65.0%
TCTGCTCAGCTCCTCCGAGG+AGG + chr7_3:80959651-80959670 Msa1129060:CDS 65.0%
TAATATGCGGGGGGCGGGGG+GGG - chr7_3:80957923-80957942 None:intergenic 70.0%
AGGGCCCGTGGTTCTCACGG+TGG - chr7_3:80959474-80959493 None:intergenic 70.0%
AGCTCCTCCGAGGAGGTCCG+TGG + chr7_3:80959658-80959677 Msa1129060:CDS 70.0%
TCTGCCACGGACCTCCTCGG+AGG - chr7_3:80959665-80959684 None:intergenic 70.0%
GGCTCTGCCACGGACCTCCT+CGG - chr7_3:80959668-80959687 None:intergenic 70.0%
AATATGCGGGGGGCGGGGGG+GGG - chr7_3:80957922-80957941 None:intergenic 75.0%
! ATATGCGGGGGGCGGGGGGG+GGG - chr7_3:80957921-80957940 None:intergenic 80.0%
! TATGCGGGGGGCGGGGGGGG+GGG - chr7_3:80957920-80957939 None:intergenic 85.0%
! ATGCGGGGGGCGGGGGGGGG+GGG - chr7_3:80957919-80957938 None:intergenic 90.0%
! TGCGGGGGGCGGGGGGGGGG+GGG - chr7_3:80957918-80957937 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 80955908 80960130 80955908 ID=Msa1129060;Name=Msa1129060
chr7_3 mRNA 80955908 80960130 80955908 ID=Msa1129060-mRNA-1;Parent=Msa1129060;Name=Msa1129060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=143|1|1|1|0.66|0.75|4|415|510
chr7_3 exon 80955908 80956048 80955908 ID=Msa1129060-mRNA-1:exon:23391;Parent=Msa1129060-mRNA-1
chr7_3 exon 80956809 80957056 80956809 ID=Msa1129060-mRNA-1:exon:23392;Parent=Msa1129060-mRNA-1
chr7_3 exon 80958236 80958455 80958236 ID=Msa1129060-mRNA-1:exon:23393;Parent=Msa1129060-mRNA-1
chr7_3 exon 80958649 80960130 80958649 ID=Msa1129060-mRNA-1:exon:23394;Parent=Msa1129060-mRNA-1
chr7_3 five_prime_UTR 80955908 80956048 80955908 ID=Msa1129060-mRNA-1:five_prime_utr;Parent=Msa1129060-mRNA-1
chr7_3 five_prime_UTR 80956809 80956810 80956809 ID=Msa1129060-mRNA-1:five_prime_utr;Parent=Msa1129060-mRNA-1
chr7_3 CDS 80956811 80957056 80956811 ID=Msa1129060-mRNA-1:cds;Parent=Msa1129060-mRNA-1
chr7_3 CDS 80958236 80958455 80958236 ID=Msa1129060-mRNA-1:cds;Parent=Msa1129060-mRNA-1
chr7_3 CDS 80958649 80959715 80958649 ID=Msa1129060-mRNA-1:cds;Parent=Msa1129060-mRNA-1
chr7_3 three_prime_UTR 80959716 80960130 80959716 ID=Msa1129060-mRNA-1:three_prime_utr;Parent=Msa1129060-mRNA-1
Gene Sequence

>Msa1129060

ATGTATAAGAACCGGTTGCAAGAGTTGGCTCAAAGAAGCTGTTTTAATTTGCCAGCCTATTCATGCATTCGTGAAGGGCCAGATCATGCTCCTCGTTTCAAGGTAACTGTCAACTTCAATGGAGAGACCTTTGAAAGCCCTACATTTTGCTCTACTCTTAGACAGGCCGAACATGCTGCAGCTGAGGTAGCTCTCAACACACTCGCAACCAGAGGTCCCTCTAGAACTTTGGCAGCTAGAGTTCTGGATGAAACAGGAGTATACAAGAATTTGCTTCAGGAAACTGCCCACAGAGCTGGACTGAACCTTCCTGTTTATAGGACTATTCGTGCTGGACCAGGTCATGTCCCTAACTTCTATTGTACTGTTGAGATTGCTGGAATGCATTTTACTGGAGACCCAGCTAGGACCAAAAAACAGGCTCAGAAAAATGCGGCAATAGCTGCTTGGTCTGCATTGAGAAAATTGTCAGAGAATCAGTTATCTTCTTCAACTTCATCCTCGTTTTCATCCGAGTCTAAAAGCAATGAAGAACAAGAACATGTTATTATTGCTCGGGTCCTTGCAAGCTTACAATCATCTAGGTCAAAGAACTTTCCAGAATGTGATCATCAACATAGATGGCAAAAGTCAACTACAACCTCATTGGTGTCAACCCAGCCAGCTCCAGGGATGTATTCTATGCAATACCAACATTGTGGAATCTCTAATTTCTCGCCCGAATTGGCTTTTCATCAGATTTGGCAGCAAGAACAAATTATGCAGCAAATGATGGCACTAACCATTCAACCAATTATTCCACCCGCTCCGCAGATTTATCCTCTAATGCATTCTGTGATCCAGCCAGATCGCTATCTCTATTTTCCATCTAAAGAGTTATCATCATTCCCTGTAGGACCAAATTTCTCTATTGCTACACCAAGGCCTCCATTTTACTATTCAAACCAAATTGTCCCCCAGTTAAACACGGGTAGGTCAACAGTAACCATTAGAGAGATACAAGAAGAAAAAGCAGAAGACTCCCAAGTTTGCAACTTTAGCAATGAGACAAGAGTCCAACCACCAGCTCCAGAGAATGTGAGACAGAATCATGGCGGCTCTCGAAGCAGTAGTAGTAGAAATGAACTGGGAGGAGAACAAAGTTTGAAATCTGAGTGGGATTCTCATAGGAGCATGGGATATGCACACAAACCAATTAATATTGAGCTGCAAAACCCATCCAGGATTGCCATAGCACATTCACAAGCAAGTTCCAGTAGATGTTTTACACCACCAGCAGCTTCATATTCCACCGTGAGAACCACGGGCCCTACTTCATCGACTGGTTCCACAGTGCAGCGCAGAGAAGTACCTATTGCTGTTGCTCCAAGGTTGAGAACTGGGGTCCTACAAAATCCGGGCATGGTAAGAACGCCTACTCCTCGATTCAATATGGCCCCAGCTGTGAGAATCAGATCAGTAGTTCCAGTCTGCTCAGCTCCTCCGAGGAGGTCCGTGGCAGAGCCGTCCAAAAGCAATGAAAAAGGAGTTTAA
Protein sequence

>Msa1129060

MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAAAEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFYCTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKLSENQLSSSTSSSFSSESKSNEEQEHVIIARVLASLQSSRSKNFPECDHQHRWQKSTTTSLVSTQPAPGMYSMQYQHCGISNFSPELAFHQIWQQEQIMQQMMALTIQPIIPPAPQIYPLMHSVIQPDRYLYFPSKELSSFPVGPNFSIATPRPPFYYSNQIVPQLNTGRSTVTIREIQEEKAEDSQVCNFSNETRVQPPAPENVRQNHGGSRSSSSRNELGGEQSLKSEWDSHRSMGYAHKPINIELQNPSRIAIAHSQASSSRCFTPPAASYSTVRTTGPTSSTGSTVQRREVPIAVAPRLRTGVLQNPGMVRTPTPRFNMAPAVRIRSVVPVCSAPPRRSVAEPSKSNEKGV*