AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093990 MtrunA17_Chr2g0322691 96.667 930 31 0 1 930 1 930 0.0 1855
Msa0093990 MtrunA17_Chr3g0144141 54.646 904 383 9 32 931 70 950 0.0 994
Msa0093990 MtrunA17_Chr8g0370261 51.929 907 413 7 20 921 18 906 0.0 972
Msa0093990 MtrunA17_Chr5g0407171 50.706 921 432 8 6 919 2 907 0.0 946
Msa0093990 MtrunA17_Chr2g0322681 49.616 911 447 8 6 912 1 903 0.0 904
Msa0093990 MtrunA17_Chr8g0370281 51.852 837 370 7 99 918 1 821 0.0 840
Msa0093990 MtrunA17_Chr3g0136621 35.301 881 533 20 9 862 9 879 5.25e-160 495
Msa0093990 MtrunA17_Chr3g0136611 33.262 938 576 22 15 927 14 926 7.04e-154 479
Msa0093990 MtrunA17_Chr4g0046101 32.432 851 491 23 32 852 36 832 6.69e-131 416
Msa0093990 MtrunA17_Chr2g0283231 30.907 948 548 30 10 925 14 886 4.85e-125 401
Msa0093990 MtrunA17_Chr2g0283261 28.046 870 530 25 16 859 17 816 9.11e-98 327
Msa0093990 MtrunA17_Chr5g0424541 29.953 858 512 27 31 851 33 838 2.25e-95 321
Msa0093990 MtrunA17_Chr2g0283241 27.797 867 536 23 14 859 14 811 1.30e-93 317
Msa0093990 MtrunA17_Chr5g0424521 30.559 733 432 22 101 805 7 690 1.64e-83 283
Msa0093990 MtrunA17_Chr7g0230081 26.531 882 523 30 34 864 48 855 1.56e-77 272
Msa0093990 MtrunA17_Chr2g0283251 27.426 773 476 24 32 783 32 740 3.39e-76 265
Msa0093990 MtrunA17_Chr7g0230091 29.936 628 351 18 247 851 6 567 4.96e-75 259
Msa0093990 MtrunA17_Chr2g0283211 29.431 615 333 18 187 786 2 530 1.50e-69 241
Msa0093990 MtrunA17_Chr6g0467751 33.915 401 242 10 473 853 46 443 7.59e-64 223
Msa0093990 MtrunA17_Chr5g0424621 27.125 553 328 22 31 553 33 540 7.89e-35 140
Msa0093990 MtrunA17_Chr8g0370291 42.254 71 40 1 29 98 22 92 1.21e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093990 AT1G05200.6 67.691 879 278 4 34 909 57 932 0.0 1263
Msa0093990 AT1G05200.2 67.691 879 278 4 34 909 57 932 0.0 1263
Msa0093990 AT1G05200.1 67.691 879 278 4 34 909 57 932 0.0 1263
Msa0093990 AT2G32390.5 65.490 878 297 3 38 909 48 925 0.0 1187
Msa0093990 AT1G05200.7 69.180 756 227 2 34 785 57 810 0.0 1118
Msa0093990 AT1G05200.3 69.180 756 227 2 34 785 57 810 0.0 1118
Msa0093990 AT2G32390.2 66.261 821 271 3 95 909 3 823 0.0 1118
Msa0093990 AT2G32390.1 66.056 819 272 3 97 909 49 867 0.0 1113
Msa0093990 AT1G42540.1 54.989 902 388 10 30 925 21 910 0.0 1004
Msa0093990 AT1G42540.4 54.989 902 388 10 30 925 21 910 0.0 1004
Msa0093990 AT1G42540.2 54.989 902 388 10 30 925 21 910 0.0 1004
Msa0093990 AT3G51480.4 51.198 918 418 8 9 925 5 893 0.0 957
Msa0093990 AT3G51480.1 51.198 918 418 8 9 925 5 893 0.0 957
Msa0093990 AT4G35290.4 53.231 913 398 11 23 923 11 906 0.0 953
Msa0093990 AT4G35290.3 53.231 913 398 11 23 923 11 906 0.0 953
Msa0093990 AT4G35290.1 53.231 913 398 11 23 923 11 906 0.0 953
Msa0093990 AT4G35290.2 53.231 913 398 11 23 923 11 906 0.0 953
Msa0093990 AT4G35290.5 53.231 913 398 11 23 923 11 906 0.0 953
Msa0093990 AT2G17260.1 53.032 907 389 13 32 924 28 911 0.0 944
Msa0093990 AT1G05200.4 67.857 616 196 1 34 649 57 670 0.0 902
Msa0093990 AT3G51480.2 52.778 828 365 7 99 925 1 803 0.0 896
Msa0093990 AT2G32390.6 67.419 620 198 1 38 653 48 667 0.0 890
Msa0093990 AT1G05200.5 67.940 602 191 1 34 635 57 656 0.0 882
Msa0093990 AT2G32390.4 66.613 617 202 1 38 650 48 664 0.0 878
Msa0093990 AT2G32390.3 66.613 617 202 1 38 650 48 664 0.0 878
Msa0093990 AT2G32390.7 66.611 602 197 1 38 635 48 649 0.0 854
Msa0093990 AT3G51480.3 53.428 773 347 5 9 781 5 764 0.0 851
Msa0093990 AT4G35290.6 54.297 768 335 7 23 781 11 771 0.0 823
Msa0093990 AT2G32400.1 45.111 900 469 9 22 912 15 898 0.0 815
Msa0093990 AT1G42540.3 54.267 621 275 7 30 644 21 638 0.0 699
Msa0093990 AT2G29120.1 36.686 875 495 16 3 862 18 848 1.29e-162 501
Msa0093990 AT5G11210.9 35.294 799 493 12 90 879 7 790 3.23e-157 483
Msa0093990 AT5G11210.1 35.086 818 504 14 74 879 12 814 5.28e-157 483
Msa0093990 AT5G11180.2 34.282 843 505 16 38 856 36 853 1.17e-156 486
Msa0093990 AT5G11210.5 35.086 818 504 14 74 879 70 872 2.84e-156 483
Msa0093990 AT2G29100.1 34.921 882 512 19 9 872 7 844 3.63e-152 473
Msa0093990 AT2G29100.2 34.921 882 512 19 9 872 9 846 4.44e-152 473
Msa0093990 AT2G24720.1 36.000 750 446 14 95 829 88 818 2.99e-150 468
Msa0093990 AT2G24710.1 33.896 829 505 17 91 894 83 893 8.47e-149 463
Msa0093990 AT2G24710.3 33.896 829 505 17 91 894 107 917 1.07e-148 464
Msa0093990 AT5G27100.1 35.733 778 459 16 95 854 88 842 1.15e-148 463
Msa0093990 AT2G29110.1 35.731 862 502 19 9 854 10 835 6.59e-148 462
Msa0093990 AT2G29110.2 35.731 862 502 19 9 854 11 836 6.91e-148 462
Msa0093990 AT5G11210.3 36.888 694 415 11 96 781 21 699 1.28e-145 449
Msa0093990 AT5G11210.8 36.429 700 422 11 90 781 7 691 7.29e-145 447
Msa0093990 AT5G11210.7 36.429 700 422 11 90 781 7 691 9.26e-145 447
Msa0093990 AT5G11210.6 36.429 700 422 11 90 781 7 691 9.26e-145 447
Msa0093990 AT5G11210.10 37.179 702 413 13 91 781 89 773 5.02e-144 447
Msa0093990 AT5G11210.2 36.714 700 419 12 91 781 89 773 5.68e-144 447
Msa0093990 AT5G11210.4 36.714 700 419 12 91 781 89 773 5.68e-144 447
Msa0093990 AT4G31710.1 36.782 783 448 17 96 861 89 841 1.01e-141 444
Msa0093990 AT4G31710.2 36.143 783 446 17 96 861 112 857 1.27e-137 434
Msa0093990 AT2G24710.2 35.511 704 423 14 91 781 107 792 1.83e-136 428
Msa0093990 AT5G11180.1 31.473 842 469 18 38 856 36 792 4.45e-125 401
Msa0093990 AT3G07520.1 30.390 872 519 24 9 856 12 819 3.14e-101 336
Msa0093990 AT5G48400.2 26.978 834 531 18 38 856 40 810 5.18e-93 314
Msa0093990 AT5G48410.1 27.421 857 541 22 38 883 42 828 1.10e-90 307
Msa0093990 AT5G48400.1 26.614 759 481 17 38 781 40 737 3.06e-81 279
Msa0093990 AT3G04110.1 26.722 842 503 22 38 851 30 785 3.71e-81 280
Msa0093990 AT5G48410.2 27.285 755 476 19 38 781 42 734 1.74e-80 277
Msa0093990 AT5G48410.4 26.254 857 524 22 38 883 42 801 1.54e-77 270
Msa0093990 AT5G48410.3 26.138 857 521 22 38 883 42 797 7.00e-75 263
Msa0093990 AT3G04110.3 26.544 761 456 20 38 781 30 704 6.00e-72 253
Msa0093990 AT3G04110.2 25.416 842 486 22 38 851 30 757 8.54e-69 245
Msa0093990 AT5G11210.11 37.346 324 199 4 532 852 15 337 4.25e-66 228

Find 218 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAACAGAACAAGGATTT+TGG 0.111436 1_2:-77098042 Msa0093990:CDS
TTTGAGCAGTGAATGGTTTA+AGG 0.173210 1_2:+77097940 None:intergenic
ACAAATTGCAGTGGATTTAT+TGG 0.178126 1_2:-77100099 Msa0093990:CDS
GCTAAATAGTGTGAACTTAA+TGG 0.185005 1_2:-77099217 Msa0093990:CDS
AGACCAACTGTTGTGAAAAT+TGG 0.195940 1_2:-77100249 Msa0093990:CDS
AACTCTCTCTTAAAAGCTTC+TGG 0.200609 1_2:-77096807 Msa0093990:CDS
CTCAAAGGCTTTCCATTGTT+TGG 0.206550 1_2:+77098475 None:intergenic
AATGAAGTTGTGGCTATAAT+TGG 0.217187 1_2:-77100291 Msa0093990:CDS
TATTCTTCCTGGTATTAAAA+TGG 0.225028 1_2:-77100139 Msa0093990:CDS
ATGTACCTCTTCTTTCATTT+GGG 0.227977 1_2:-77099497 Msa0093990:CDS
CATGTACCTCTTCTTTCATT+TGG 0.229059 1_2:-77099498 Msa0093990:CDS
TCCAAAATCCTTGTTCTGTT+TGG 0.230043 1_2:+77098041 None:intergenic
TGAGTTCTGGTGTTGGTTTA+AGG 0.236614 1_2:-77100411 Msa0093990:five_prime_UTR
TATTTAGATTCCATCCTTCT+TGG 0.245159 1_2:-77096358 Msa0093990:three_prime_UTR
CTACCTCGAGTTTGTTTCTA+AGG 0.255135 1_2:-77098428 Msa0093990:CDS
CCAAAATCCTTGTTCTGTTT+GGG 0.258528 1_2:+77098042 None:intergenic
ACTCAACCTTTCATGGAATC+AGG 0.270280 1_2:-77098014 Msa0093990:CDS
ATTCTTCAACTCTCAGAAAA+TGG 0.277745 1_2:-77096907 Msa0093990:CDS
TTGGAATACCTTACCTTGAT+TGG 0.295410 1_2:-77100683 Msa0093990:five_prime_UTR
ACATCGGTGAATCTGGTTTC+CGG 0.298014 1_2:-77098651 Msa0093990:CDS
AACTTGCATCATGTATAAAT+AGG 0.301524 1_2:+77100866 None:intergenic
AGTCATCATTCCAAGATTCT+TGG 0.302144 1_2:+77099134 None:intergenic
GGGATAAGGCAACAAGTTTA+TGG 0.302251 1_2:+77098354 None:intergenic
GATTGTCATAATTTGCTTCC+TGG 0.305338 1_2:+77097827 None:intergenic
GTTTCCGGAGAGTCGGTTAT+TGG 0.309022 1_2:-77098636 Msa0093990:CDS
AGCAAATTATGACAATCTTT+TGG 0.314822 1_2:-77097821 Msa0093990:intron
CAAAGACTTGATTGTATTTG+TGG 0.316787 1_2:-77096620 Msa0093990:CDS
AAGAATCCACCAGGAGTTAA+AGG 0.316821 1_2:-77098403 Msa0093990:CDS
CTACAGCCAGCTTGTTAATC+AGG 0.316988 1_2:-77098284 Msa0093990:CDS
ATCCTTAACATCGGTGAATC+TGG 0.317171 1_2:-77098658 Msa0093990:CDS
ATTATAGCCACAACTTCATT+TGG 0.318223 1_2:+77100294 None:intergenic
GGATTTCACTCAACCTTTCA+TGG 0.322099 1_2:-77098021 Msa0093990:CDS
TCAAAGGCTTTCCATTGTTT+GGG 0.322840 1_2:+77098476 None:intergenic
TTTACTATTGCCAAGAATCT+TGG 0.334414 1_2:-77099144 Msa0093990:CDS
GAAAACACTGTGAGTGGTCT+TGG 0.336437 1_2:-77097555 Msa0093990:CDS
CCGCGACAATATATATTATT+CGG 0.337276 1_2:-77098328 Msa0093990:CDS
TCCTTCAAAGTTGGATTCAA+TGG 0.338078 1_2:-77099079 Msa0093990:CDS
ACTTGACAGGTGTTGAGTTC+TGG 0.342444 1_2:-77100424 Msa0093990:intron
TGCGTGGTTCGGACAAAATA+TGG 0.351432 1_2:+77099441 None:intergenic
TGATGTAGCTTTGCAGTTGA+TGG 0.355073 1_2:-77099598 Msa0093990:intron
AATATATATTGTCGCGGAAC+GGG 0.362665 1_2:+77098334 None:intergenic
TTCAAGGTGTTGTAGCTTTG+AGG 0.370685 1_2:-77099026 Msa0093990:CDS
TATTGTCGCGGAACGGGATA+AGG 0.373051 1_2:+77098340 None:intergenic
ATGGAGGTGTTAGGAGTAAA+GGG 0.377419 1_2:-77100348 Msa0093990:CDS
TTCAATGTGTTAGTATCAAC+TGG 0.379645 1_2:+77099054 None:intergenic
TGGGGTCTCTTTCTTATATG+TGG 0.379860 1_2:-77096787 Msa0093990:CDS
GCTAATAAGACTATTCTTCC+TGG 0.382556 1_2:-77100150 Msa0093990:CDS
GACATAAAGAGTTCAATATA+AGG 0.383153 1_2:+77097231 None:intergenic
TTTACTGTTGATTCTGTGAT+TGG 0.383641 1_2:-77100219 Msa0093990:CDS
CTCCATTCGGTCCACGCGTA+AGG 0.385447 1_2:+77097283 None:intergenic
TGGTTGCTTATTGAAGTGTT+AGG 0.387184 1_2:+77098559 None:intergenic
AGACAATTTGATTCTTGAAA+AGG 0.387607 1_2:-77100989 Msa0093990:five_prime_UTR
GGAGATTTGTGCTAATCATA+TGG 0.392311 1_2:-77097533 Msa0093990:CDS
ATACTACAGCACCAACAAAA+AGG 0.393770 1_2:+77097892 None:intergenic
ATGGAAACTGCAGAGAAGAT+AGG 0.402701 1_2:+77099460 None:intergenic
CTCAATGAAACTATCCTAGA+TGG 0.403452 1_2:+77097330 None:intergenic
ATGATGCAAGTTTAGCTTTG+AGG 0.404656 1_2:-77100855 Msa0093990:five_prime_UTR
TATATTGAACTCTTTATGTC+TGG 0.404663 1_2:-77097228 Msa0093990:CDS
TATATGCATATGATTCTGTT+TGG 0.404993 1_2:-77098909 Msa0093990:CDS
AACCAGATTCACCGATGTTA+AGG 0.407729 1_2:+77098656 None:intergenic
GCTCAAATGTGGTGTGTTAC+CGG 0.411160 1_2:-77097924 Msa0093990:CDS
GAGAAATAAAGGAGATACTT+AGG 0.417888 1_2:-77096585 Msa0093990:CDS
GGTCTCTTGTACAAAACTTC+AGG 0.418242 1_2:+77098583 None:intergenic
TGTGTTCACTAAAAGTGGTT+GGG 0.422992 1_2:-77097175 Msa0093990:CDS
TCAACTTCCATCTCACTCCC+TGG 0.423289 1_2:+77096697 None:intergenic
AATAGTCGCTGTGCGTGGTT+CGG 0.425644 1_2:+77099430 None:intergenic
ATATCAGGTAATCAACCAAT+TGG 0.427826 1_2:-77097408 Msa0093990:CDS
ATTGTCATAATTTGCTTCCT+GGG 0.434062 1_2:+77097828 None:intergenic
GGAATTGACAGCTTGATATC+AGG 0.434188 1_2:-77097423 Msa0093990:CDS
GGATTTATTGGAACAGTTGA+AGG 0.435584 1_2:-77100087 Msa0093990:intron
CACCACATTTGAGCAGTGAA+TGG 0.435645 1_2:+77097933 None:intergenic
AGATTGGCTTCCTTCAAAGT+TGG 0.435793 1_2:-77099088 Msa0093990:CDS
ACTCTCTCTTAAAAGCTTCT+GGG 0.443262 1_2:-77096806 Msa0093990:CDS
CTTGATTTGATCTCCTTGAC+AGG 0.444431 1_2:+77097975 None:intergenic
CAGAACTTTGATGCAGCTGT+TGG 0.449103 1_2:-77098080 Msa0093990:CDS
AATGAAGTGATTGCCACAAT+TGG 0.450571 1_2:-77099573 Msa0093990:CDS
TAGCAAGGGGAGAGTCCCTC+TGG 0.451698 1_2:+77096947 None:intergenic
TGCAAAAGATCCACGACAAA+TGG 0.451961 1_2:-77096879 Msa0093990:CDS
AATGGAGGTGTTAGGAGTAA+AGG 0.453081 1_2:-77100349 Msa0093990:CDS
ATATATATTGTTATTTACTT+AGG 0.455659 1_2:+77096501 None:intergenic
GTTCATGTTAATCCCGATCA+TGG 0.457387 1_2:-77099177 Msa0093990:CDS
TCCATTGAATCCAACTTTGA+AGG 0.458795 1_2:+77099078 None:intergenic
GACCCGTCTTGAATTCCAAT+TGG 0.460990 1_2:+77097393 None:intergenic
AGATTCCATCCTTCTTGGCT+AGG 0.464490 1_2:-77096353 Msa0093990:three_prime_UTR
CAGCTATCCTCACAAATTGA+AGG 0.465339 1_2:-77097444 Msa0093990:CDS
CTGAAACAGTATTAATAAGT+AGG 0.469008 1_2:+77100720 None:intergenic
AACACATTGAAACTCCTTCA+AGG 0.469576 1_2:-77099042 Msa0093990:CDS
GACGATGATTATGGAAGAAA+CGG 0.471966 1_2:-77099339 Msa0093990:CDS
TACAAAGCCGCATTATCTCC+TGG 0.474815 1_2:-77099267 Msa0093990:CDS
CAAGATACTGATATCATCCT+TGG 0.475113 1_2:+77099239 None:intergenic
AGGGCGTCCTCATATACCTT+TGG 0.477099 1_2:+77097303 None:intergenic
ATATCATCCTTGGTGGCTCC+AGG 0.478602 1_2:+77099249 None:intergenic
AAAATATTCAAACCATGATC+GGG 0.480624 1_2:+77099165 None:intergenic
AAAACACTGTGAGTGGTCTT+GGG 0.485893 1_2:-77097554 Msa0093990:CDS
CTTGATGCTTTACTCAAAGA+AGG 0.487442 1_2:-77098871 Msa0093990:CDS
TCAAAGCTACAACACCTTGA+AGG 0.494588 1_2:+77099028 None:intergenic
CAGGTGTTGAGTTCTGGTGT+TGG 0.498356 1_2:-77100418 Msa0093990:five_prime_UTR
CTCAACCTTTCATGGAATCA+GGG 0.499064 1_2:-77098013 Msa0093990:CDS
ACCTTTCATGGAATCAGGGC+TGG 0.503020 1_2:-77098009 Msa0093990:CDS
TTAGGCAGAAGAGTAAGAAA+AGG 0.503056 1_2:-77096567 Msa0093990:CDS
AGGAGATCAAATCAAGCCCT+TGG 0.503218 1_2:-77097968 Msa0093990:CDS
CAACTTCCATCTCACTCCCT+GGG 0.506695 1_2:+77096698 None:intergenic
TTTGGGAAAACCCATCCTCT+TGG 0.509537 1_2:+77098493 None:intergenic
ACGCGTGGACCGAATGGAGG+AGG 0.509621 1_2:-77097279 Msa0093990:CDS
TTAACAAGCTGGCTGTAGTC+GGG 0.509830 1_2:+77098289 None:intergenic
TGTACCTCTTCTTTCATTTG+GGG 0.512564 1_2:-77099496 Msa0093990:CDS
TCTTGAGCACAGGCACAATC+CGG 0.513255 1_2:-77097865 Msa0093990:CDS
TAGACCAATAACCGACTCTC+CGG 0.515792 1_2:+77098632 None:intergenic
ATGTGTGGATTGCAACAGAT+TGG 0.517566 1_2:-77099104 Msa0093990:CDS
AACTCAATATACAACCATCT+AGG 0.518450 1_2:-77097344 Msa0093990:CDS
GTCTTGAAAGCCATTTGTCG+TGG 0.519858 1_2:+77096869 None:intergenic
GTGTTCACTAAAAGTGGTTG+GGG 0.519933 1_2:-77097174 Msa0093990:CDS
GGTAGTTGTTGTTCCTGTCA+AGG 0.521207 1_2:-77097988 Msa0093990:CDS
GGTGTAGCTATAGTTTCTCC+AGG 0.521581 1_2:+77098514 None:intergenic
TGGAAACTGCAGAGAAGATA+GGG 0.522263 1_2:+77099461 None:intergenic
ATTAACAAGCTGGCTGTAGT+CGG 0.522679 1_2:+77098288 None:intergenic
GTCATAATTTGCTTCCTGGG+TGG 0.524462 1_2:+77097831 None:intergenic
GCTACAACCCCTCCTCCATT+CGG 0.524506 1_2:+77097270 None:intergenic
GTCAATTCCTTCAATTTGTG+AGG 0.524687 1_2:+77097437 None:intergenic
TCCATTCGGTCCACGCGTAA+GGG 0.524711 1_2:+77097284 None:intergenic
ATGCAATAGCCTTTAACTCC+TGG 0.525831 1_2:+77098394 None:intergenic
TAATATATATTGTCGCGGAA+CGG 0.526877 1_2:+77098333 None:intergenic
GTGCAACCTGATTAACAAGC+TGG 0.527712 1_2:+77098278 None:intergenic
GAGAGATCCAAAGGTATATG+AGG 0.527797 1_2:-77097310 Msa0093990:CDS
GGAAATGTGTTCACTAAAAG+TGG 0.528776 1_2:-77097180 Msa0093990:CDS
GCCCTTACGCGTGGACCGAA+TGG 0.528919 1_2:-77097285 Msa0093990:CDS
CCTAAGCTGATTGACACAAA+AGG 0.532905 1_2:-77098823 Msa0093990:CDS
CAAACTGATCATCTAAGCTC+TGG 0.532998 1_2:+77096536 None:intergenic
TAGCTGCTGCACTGTGAGGA+TGG 0.533117 1_2:+77097461 None:intergenic
AACTGCAAGTTCAGAACCGT+TGG 0.537171 1_2:-77097201 Msa0093990:CDS
AAGACGGGTCATTTGCAAGA+AGG 0.537649 1_2:-77097380 Msa0093990:CDS
GAATCTGGTTTCCGGAGAGT+CGG 0.539476 1_2:-77098643 Msa0093990:CDS
TATATAAACCAATCAAGGTA+AGG 0.539950 1_2:+77100675 None:intergenic
CAATAATTTCCTAGCCAAGA+AGG 0.540497 1_2:+77096344 None:intergenic
TACAAATTTAATATGCATGT+GGG 0.540698 1_2:-77100762 Msa0093990:five_prime_UTR
AGCTATATATAAACCAATCA+AGG 0.541022 1_2:+77100670 None:intergenic
CAATTGTCCCAAACAGAACA+AGG 0.541430 1_2:-77098049 Msa0093990:CDS
GGAGATCAAATCAAGCCCTT+GGG 0.544302 1_2:-77097967 Msa0093990:CDS
ATATTGTTATTTACTTAGGT+AGG 0.545707 1_2:+77096505 None:intergenic
TCTAGGTTGAAGAACGCAAA+CGG 0.545787 1_2:-77098964 Msa0093990:CDS
CTGGGTGGACCTCGGAACTC+CGG 0.547905 1_2:+77097846 None:intergenic
GAGTGAGATGGAAGTTGACC+AGG 0.550105 1_2:-77096692 Msa0093990:CDS
AGGAGCTAAAACTGATAGAC+CGG 0.551583 1_2:+77098603 None:intergenic
CTATAGCTACACCAAGAGGA+TGG 0.554528 1_2:-77098504 Msa0093990:CDS
AAAAGTGTAGGGAGAAAGTC+CGG 0.554930 1_2:+77098757 None:intergenic
ACAATTGGTCCACAATCCTC+AGG 0.555615 1_2:-77099558 Msa0093990:CDS
AAGTTCATTCTCAAAAGTGT+AGG 0.556972 1_2:+77098745 None:intergenic
TAAAGTCTTGATCATGCTCA+TGG 0.558196 1_2:-77100606 Msa0093990:five_prime_UTR
TTGTTATTTACTTAGGTAGG+TGG 0.558818 1_2:+77096508 None:intergenic
AACGGTTCTGAACTTGCAGT+TGG 0.559033 1_2:+77097203 None:intergenic
TAGTATGGATTCTTGAGCAC+AGG 0.559377 1_2:-77097875 Msa0093990:CDS
CAACCAATTGGAATTCAAGA+CGG 0.561704 1_2:-77097396 Msa0093990:CDS
AACCAATTGGAATTCAAGAC+GGG 0.564447 1_2:-77097395 Msa0093990:CDS
CAATATATATTATTCGGAGA+TGG 0.566628 1_2:-77098322 Msa0093990:CDS
ATGTGTTCACTAAAAGTGGT+TGG 0.569973 1_2:-77097176 Msa0093990:CDS
CAATAGCCTTTAACTCCTGG+TGG 0.570495 1_2:+77098397 None:intergenic
ACCAGCCCTGATTCCATGAA+AGG 0.571061 1_2:+77098008 None:intergenic
CGGAGTTCCGAGGTCCACCC+AGG 0.572905 1_2:-77097845 Msa0093990:CDS
TGAGCTATTCCTGAGGATTG+TGG 0.573695 1_2:+77099549 None:intergenic
TTTGCTTCCTGGGTGGACCT+CGG 0.574116 1_2:+77097838 None:intergenic
ATGTTAAGGATATCATATGA+TGG 0.574140 1_2:+77098670 None:intergenic
TTTCATGATACAAATTGCAG+TGG 0.576132 1_2:-77100108 Msa0093990:CDS
CGCGTGGACCGAATGGAGGA+GGG 0.576233 1_2:-77097278 Msa0093990:CDS
TGAGGCACTGCTATTCTCAA+AGG 0.576248 1_2:+77098460 None:intergenic
ATGAACTTCACTGGTTTGAG+TGG 0.577802 1_2:-77098730 Msa0093990:CDS
GTGGATTCCAAATGAAGTTG+TGG 0.579560 1_2:-77100301 Msa0093990:CDS
TTACAAATTTAATATGCATG+TGG 0.581326 1_2:-77100763 Msa0093990:five_prime_UTR
AGAAACGGAATTTCAATACT+CGG 0.581527 1_2:-77099324 Msa0093990:CDS
CAATACATGAAATTCATCCC+AGG 0.584069 1_2:-77096715 Msa0093990:CDS
TGAGGATTGTGGACCAATTG+TGG 0.585224 1_2:+77099560 None:intergenic
CTCTCTCTTAAAAGCTTCTG+GGG 0.586457 1_2:-77096805 Msa0093990:CDS
AGTTCATTCTCAAAAGTGTA+GGG 0.586570 1_2:+77098746 None:intergenic
CAGTTGACATATCAATAGCA+AGG 0.587284 1_2:+77096932 None:intergenic
AATTTCCTAGCCAAGAAGGA+TGG 0.587720 1_2:+77096348 None:intergenic
AGTTTCATTGAGAGATCCAA+AGG 0.593132 1_2:-77097319 Msa0093990:CDS
GGTTATTGGTCTAATTACTC+CGG 0.594786 1_2:-77098622 Msa0093990:CDS
GTTGAAGAACGCAAACGGCA+CGG 0.597011 1_2:-77098959 Msa0093990:CDS
ATTCATCCCAGGGAGTGAGA+TGG 0.599534 1_2:-77096704 Msa0093990:CDS
GATACTGATATCATCCTTGG+TGG 0.600845 1_2:+77099242 None:intergenic
TTTAGTGAACACATTTCCAA+CGG 0.601875 1_2:+77097185 None:intergenic
AACCATTCACTGCTCAAATG+TGG 0.604971 1_2:-77097935 Msa0093990:CDS
TTGCTTATTGAAGTGTTAGG+TGG 0.609190 1_2:+77098562 None:intergenic
TATAGCTACACCAAGAGGAT+GGG 0.610856 1_2:-77098503 Msa0093990:CDS
ACTGCAGAGAAGATAGGGTA+GGG 0.615071 1_2:+77099466 None:intergenic
GATGCTTTACTCAAAGAAGG+TGG 0.616128 1_2:-77098868 Msa0093990:CDS
AGTTGACATATCAATAGCAA+GGG 0.617744 1_2:+77096933 None:intergenic
CAAATGAAAGAAGAGGTACA+TGG 0.620174 1_2:+77099499 None:intergenic
ACAGTATTAATAAGTAGGTG+TGG 0.621841 1_2:+77100725 None:intergenic
CTGAAAATAGTCGCTGTGCG+TGG 0.622773 1_2:+77099425 None:intergenic
AATACATGAAATTCATCCCA+GGG 0.622960 1_2:-77096714 Msa0093990:CDS
CTTACGCGTGGACCGAATGG+AGG 0.623808 1_2:-77097282 Msa0093990:CDS
GTTGCCCCAAATGAAAGAAG+AGG 0.623927 1_2:+77099492 None:intergenic
CCGAATAATATATATTGTCG+CGG 0.627209 1_2:+77098328 None:intergenic
ATTATCTCCTGGAGCCACCA+AGG 0.633029 1_2:-77099256 Msa0093990:CDS
AACTGCAGAGAAGATAGGGT+AGG 0.635877 1_2:+77099465 None:intergenic
AATCTTGGAATGATGACTAG+TGG 0.639163 1_2:-77099129 Msa0093990:CDS
ACAGGAGAAAACACTGTGAG+TGG 0.640886 1_2:-77097561 Msa0093990:intron
GAAACTATAGCTACACCAAG+AGG 0.641101 1_2:-77098508 Msa0093990:CDS
AATGGTTTAAGGAAAGCCCA+AGG 0.642280 1_2:+77097951 None:intergenic
TCATATGATATCCTTAACAT+CGG 0.644656 1_2:-77098667 Msa0093990:CDS
ATGATCACAGGGATTCCAGA+GGG 0.649288 1_2:-77096962 Msa0093990:intron
AGGCACAATCCGGAGTTCCG+AGG 0.650646 1_2:-77097855 Msa0093990:CDS
TCTAAGGACAAGAATCCACC+AGG 0.651159 1_2:-77098412 Msa0093990:CDS
ACCAGGAAAATCCGTCACCT+AGG 0.653912 1_2:-77096675 Msa0093990:CDS
TGATGACTAGTGGTTATGTG+TGG 0.663189 1_2:-77099119 Msa0093990:CDS
GCGTGGACCGAATGGAGGAG+GGG 0.668319 1_2:-77097277 Msa0093990:CDS
AGGATAGCTGCTGCACTGTG+AGG 0.668868 1_2:+77097457 None:intergenic
ATGGTTTAAGGAAAGCCCAA+GGG 0.670983 1_2:+77097952 None:intergenic
TGTCCTTAGAAACAAACTCG+AGG 0.671921 1_2:+77098425 None:intergenic
TATGAGGACGCCCTTACGCG+TGG 0.674186 1_2:-77097294 Msa0093990:CDS
ATTGGAAGATCAGCTCAACA+AGG 0.681994 1_2:-77100201 Msa0093990:CDS
GATGATATGAGCTATTCCTG+AGG 0.688313 1_2:+77099542 None:intergenic
GTTGACATATCAATAGCAAG+GGG 0.698402 1_2:+77096934 None:intergenic
GGTGGCTCCAGGAGATAATG+CGG 0.718412 1_2:+77099260 None:intergenic
TCGAGGTAGCTTATTCTGTG+AGG 0.720996 1_2:+77098442 None:intergenic
GATGCGCTAGCAAAGAAACG+CGG 0.721197 1_2:-77099300 Msa0093990:CDS
CATGATCACAGGGATTCCAG+AGG 0.735472 1_2:-77096963 Msa0093990:intron
TGGCTTTCAAGACAGAACTG+TGG 0.756266 1_2:-77096859 Msa0093990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATATTTATATTTTGAA+TGG - chr1_2:77097225-77097244 Msa0093990:CDS 10.0%
!!! ATATATATTGTTATTTACTT+AGG + chr1_2:77100709-77100728 None:intergenic 10.0%
!!! TTCTTTTATTTTTGATATTT+TGG - chr1_2:77100780-77100799 Msa0093990:five_prime_UTR 10.0%
!!! AATTCTTAATGTTCAATTTT+AGG - chr1_2:77097160-77097179 Msa0093990:intron 15.0%
!!! TTCAATTTTAGGTTTAATTT+TGG - chr1_2:77097171-77097190 Msa0093990:CDS 15.0%
!!! TCAATTTTAGGTTTAATTTT+GGG - chr1_2:77097172-77097191 Msa0093990:CDS 15.0%
!! CAAAAAAAAAAAAAGAAACA+AGG + chr1_2:77100744-77100763 None:intergenic 15.0%
!!! CTTGTTTCTTTTTTTTTTTT+TGG - chr1_2:77100742-77100761 Msa0093990:five_prime_UTR 15.0%
!! TATCAAAAATAAAAGAAACA+AGG + chr1_2:77100777-77100796 None:intergenic 15.0%
!! TTACAAATTTAATATGCATG+TGG - chr1_2:77096444-77096463 Msa0093990:intron 20.0%
!! TACAAATTTAATATGCATGT+GGG - chr1_2:77096445-77096464 Msa0093990:intron 20.0%
!! TTCTTATTCTATGATATGTT+TGG - chr1_2:77096676-77096695 Msa0093990:CDS 20.0%
!!! CAATTTTAGGTTTAATTTTG+GGG - chr1_2:77097173-77097192 Msa0093990:CDS 20.0%
!!! TCCTTATTTTTTCATTACTT+AGG - chr1_2:77097284-77097303 Msa0093990:CDS 20.0%
!!! TTTTTTTTGTCTTAAACCTT+CGG - chr1_2:77097318-77097337 Msa0093990:CDS 20.0%
!! TAAATTATATCCTATATGAG+AGG + chr1_2:77097509-77097528 None:intergenic 20.0%
!! ATATAGGATATAATTTAGAG+AGG - chr1_2:77097512-77097531 Msa0093990:CDS 20.0%
!!! ACATTGTTGATTTTTATAGA+TGG - chr1_2:77097821-77097840 Msa0093990:intron 20.0%
!! AAAAATATTCAAACCATGAT+CGG + chr1_2:77098046-77098065 None:intergenic 20.0%
!!! TCAAAAAAAGTTTTTTCTCT+AGG - chr1_2:77098226-77098245 Msa0093990:intron 20.0%
!! AGATACAGCATTTAAATATT+GGG + chr1_2:77099026-77099045 None:intergenic 20.0%
!! TAGATACAGCATTTAAATAT+TGG + chr1_2:77099027-77099046 None:intergenic 20.0%
!!! AGTATTTTTAGCTTAATCAT+TGG - chr1_2:77099411-77099430 Msa0093990:CDS 20.0%
!!! GTATAAATTTCTGATTTTCT+TGG - chr1_2:77099608-77099627 Msa0093990:intron 20.0%
!! TTATGTAACTCTTATGTAAA+GGG - chr1_2:77100109-77100128 Msa0093990:CDS 20.0%
!!! ATATTGTTATTTACTTAGGT+AGG + chr1_2:77100705-77100724 None:intergenic 20.0%
!!! GTTTCTTTTTTTTTTTTTGG+TGG - chr1_2:77100745-77100764 Msa0093990:five_prime_UTR 20.0%
! AACTTGCATCATGTATAAAT+AGG + chr1_2:77096344-77096363 None:intergenic 25.0%
! CTGAAACAGTATTAATAAGT+AGG + chr1_2:77096490-77096509 None:intergenic 25.0%
! TATATAAACCAATCAAGGTA+AGG + chr1_2:77096535-77096554 None:intergenic 25.0%
! AGCTATATATAAACCAATCA+AGG + chr1_2:77096540-77096559 None:intergenic 25.0%
!!! TGGCTTATTTTTTTATATCC+AGG - chr1_2:77096621-77096640 Msa0093990:CDS 25.0%
!!! TTTTTTATATCCAGGTATGT+CGG - chr1_2:77096629-77096648 Msa0093990:CDS 25.0%
!! AATTTTTGCTGATGTTGAAA+AGG - chr1_2:77096756-77096775 Msa0093990:CDS 25.0%
! TATTCTTCCTGGTATTAAAA+TGG - chr1_2:77097068-77097087 Msa0093990:intron 25.0%
!!! ATAACATCCATTTTAATACC+AGG + chr1_2:77097078-77097097 None:intergenic 25.0%
! GCCTAAGTAATGAAAAAATA+AGG + chr1_2:77097288-77097307 None:intergenic 25.0%
! ACCATTAATTGTTTCAGTTA+GGG - chr1_2:77097390-77097409 Msa0093990:CDS 25.0%
!!! TACTAGTCTTAAACTAGAAA+TGG + chr1_2:77097473-77097492 None:intergenic 25.0%
! ATATAATCTTCCTCTCATAT+AGG - chr1_2:77097496-77097515 Msa0093990:CDS 25.0%
! ATTTAGAGAGGAATTTCTTA+TGG - chr1_2:77097524-77097543 Msa0093990:CDS 25.0%
!!! TTGTTGATTTTTATAGATGG+AGG - chr1_2:77097824-77097843 Msa0093990:CDS 25.0%
! ATAATCATCGTCTACAAAAA+TGG + chr1_2:77097860-77097879 None:intergenic 25.0%
!! ATTTTTGTAGACGATGATTA+TGG - chr1_2:77097859-77097878 Msa0093990:CDS 25.0%
! AAAATATTCAAACCATGATC+GGG + chr1_2:77098045-77098064 None:intergenic 25.0%
!!! CTTTTTTTGAGATTTGTATC+AGG + chr1_2:77098216-77098235 None:intergenic 25.0%
! TATATGCATATGATTCTGTT+TGG - chr1_2:77098298-77098317 Msa0093990:CDS 25.0%
! ATGTTAAGGATATCATATGA+TGG + chr1_2:77098540-77098559 None:intergenic 25.0%
! TCATATGATATCCTTAACAT+CGG - chr1_2:77098540-77098559 Msa0093990:CDS 25.0%
!! ACAAAACATTGAACAGTTTT+TGG + chr1_2:77098671-77098690 None:intergenic 25.0%
!! AAAAACTGTTCAATGTTTTG+TGG - chr1_2:77098670-77098689 Msa0093990:CDS 25.0%
! CAATATATATTATTCGGAGA+TGG - chr1_2:77098885-77098904 Msa0093990:CDS 25.0%
! TTAGTGATTCAATGATCATA+TGG - chr1_2:77098988-77099007 Msa0093990:CDS 25.0%
!! AGCAAATTATGACAATCTTT+TGG - chr1_2:77099386-77099405 Msa0093990:CDS 25.0%
! GACATAAAGAGTTCAATATA+AGG + chr1_2:77099979-77099998 None:intergenic 25.0%
! TATATTGAACTCTTTATGTC+TGG - chr1_2:77099979-77099998 Msa0093990:intron 25.0%
! ACATAAGAGTTACATAAGAA+GGG + chr1_2:77100106-77100125 None:intergenic 25.0%
! TACATAAGAGTTACATAAGA+AGG + chr1_2:77100107-77100126 None:intergenic 25.0%
! CTTATGTAACTCTTATGTAA+AGG - chr1_2:77100108-77100127 Msa0093990:CDS 25.0%
!! GAAGATAGAAATGTTTTTCT+TGG + chr1_2:77100558-77100577 None:intergenic 25.0%
! TTATACACAGTGTAGAAAAA+AGG - chr1_2:77100900-77100919 Msa0093990:five_prime_UTR 25.0%
!!! GATACTCTTACTTGTTTTAG+AGG - chr1_2:77096383-77096402 Msa0093990:three_prime_UTR 30.0%
ACAGTATTAATAAGTAGGTG+TGG + chr1_2:77096485-77096504 None:intergenic 30.0%
CAGCAAAAATTCACAAACAA+AGG + chr1_2:77096747-77096766 None:intergenic 30.0%
TAAGGTAGAACAAAAATTGC+AGG - chr1_2:77096814-77096833 Msa0093990:CDS 30.0%
!! TCAGAGGTTTTTCTGAAAAA+TGG - chr1_2:77096840-77096859 Msa0093990:CDS 30.0%
ATTATAGCCACAACTTCATT+TGG + chr1_2:77096916-77096935 None:intergenic 30.0%
AATGAAGTTGTGGCTATAAT+TGG - chr1_2:77096916-77096935 Msa0093990:CDS 30.0%
!! TTTACTGTTGATTCTGTGAT+TGG - chr1_2:77096988-77097007 Msa0093990:intron 30.0%
TTTCATGATACAAATTGCAG+TGG - chr1_2:77097099-77097118 Msa0093990:intron 30.0%
! ACAAATTGCAGTGGATTTAT+TGG - chr1_2:77097108-77097127 Msa0093990:intron 30.0%
!!! TTTTAGGTTTAATTTTGGGG+AGG - chr1_2:77097176-77097195 Msa0093990:CDS 30.0%
TTTCATTACTTAGGCATTTC+TGG - chr1_2:77097293-77097312 Msa0093990:CDS 30.0%
GACCATTAATTGTTTCAGTT+AGG - chr1_2:77097389-77097408 Msa0093990:CDS 30.0%
! TGGTTAATGAGTTCTAGTTA+AGG + chr1_2:77097446-77097465 None:intergenic 30.0%
AGTCTTAAACTAGAAATGGA+TGG + chr1_2:77097469-77097488 None:intergenic 30.0%
ATGTACCTCTTCTTTCATTT+GGG - chr1_2:77097710-77097729 Msa0093990:intron 30.0%
AGAAACGGAATTTCAATACT+CGG - chr1_2:77097883-77097902 Msa0093990:CDS 30.0%
GCTAAATAGTGTGAACTTAA+TGG - chr1_2:77097990-77098009 Msa0093990:CDS 30.0%
TTTACTATTGCCAAGAATCT+TGG - chr1_2:77098063-77098082 Msa0093990:CDS 30.0%
TTCAATGTGTTAGTATCAAC+TGG + chr1_2:77098156-77098175 None:intergenic 30.0%
! AGTTCATTCTCAAAAGTGTA+GGG + chr1_2:77098464-77098483 None:intergenic 30.0%
! AAGTTCATTCTCAAAAGTGT+AGG + chr1_2:77098465-77098484 None:intergenic 30.0%
TAATATATATTGTCGCGGAA+CGG + chr1_2:77098877-77098896 None:intergenic 30.0%
CCGAATAATATATATTGTCG+CGG + chr1_2:77098882-77098901 None:intergenic 30.0%
CCGCGACAATATATATTATT+CGG - chr1_2:77098879-77098898 Msa0093990:CDS 30.0%
GATCATTGAATCACTAAATG+AGG + chr1_2:77098985-77099004 None:intergenic 30.0%
!! ATTGTCATAATTTGCTTCCT+GGG + chr1_2:77099382-77099401 None:intergenic 30.0%
! TTTTCTTGGTTGCTATGATT+TGG - chr1_2:77099622-77099641 Msa0093990:intron 30.0%
ATATCAGGTAATCAACCAAT+TGG - chr1_2:77099799-77099818 Msa0093990:intron 30.0%
AACTCAATATACAACCATCT+AGG - chr1_2:77099863-77099882 Msa0093990:intron 30.0%
TTTAGTGAACACATTTCCAA+CGG + chr1_2:77100025-77100044 None:intergenic 30.0%
GGATTTGTAAGTATCTCTAA+TGG - chr1_2:77100054-77100073 Msa0093990:intron 30.0%
AACAATCACTATCATAGAAG+AGG + chr1_2:77100179-77100198 None:intergenic 30.0%
AGTTGACATATCAATAGCAA+GGG + chr1_2:77100277-77100296 None:intergenic 30.0%
ATTCTTCAACTCTCAGAAAA+TGG - chr1_2:77100300-77100319 Msa0093990:CDS 30.0%
AATACATGAAATTCATCCCA+GGG - chr1_2:77100493-77100512 Msa0093990:intron 30.0%
CAAAGACTTGATTGTATTTG+TGG - chr1_2:77100587-77100606 Msa0093990:five_prime_UTR 30.0%
TAAGAGAGAGAGAGAAATAA+AGG - chr1_2:77100611-77100630 Msa0093990:five_prime_UTR 30.0%
GAGAAATAAAGGAGATACTT+AGG - chr1_2:77100622-77100641 Msa0093990:five_prime_UTR 30.0%
!! TTGTTATTTACTTAGGTAGG+TGG + chr1_2:77100702-77100721 None:intergenic 30.0%
TATTTAGATTCCATCCTTCT+TGG - chr1_2:77100849-77100868 Msa0093990:five_prime_UTR 30.0%
!! ATGATGCAAGTTTAGCTTTG+AGG - chr1_2:77096352-77096371 Msa0093990:three_prime_UTR 35.0%
! TTCAGCTTTTGTCTTCACTT+TGG - chr1_2:77096505-77096524 Msa0093990:exon 35.0%
TTGGAATACCTTACCTTGAT+TGG - chr1_2:77096524-77096543 Msa0093990:CDS 35.0%
TAAAGTCTTGATCATGCTCA+TGG - chr1_2:77096601-77096620 Msa0093990:CDS 35.0%
TTGAAAAGGTTGTACTTGAC+AGG - chr1_2:77096770-77096789 Msa0093990:CDS 35.0%
CAAAAATTGCAGGATTTCAG+AGG - chr1_2:77096824-77096843 Msa0093990:CDS 35.0%
!! GAGGTTTTTCTGAAAAATGG+AGG - chr1_2:77096843-77096862 Msa0093990:CDS 35.0%
!! TTCTGAAAAATGGAGGTGTT+AGG - chr1_2:77096850-77096869 Msa0093990:CDS 35.0%
!!! TCCTCTTGTTTTTCTGTTTG+TGG - chr1_2:77096887-77096906 Msa0093990:CDS 35.0%
TCCACAAACAGAAAAACAAG+AGG + chr1_2:77096891-77096910 None:intergenic 35.0%
AGACCAACTGTTGTGAAAAT+TGG - chr1_2:77096958-77096977 Msa0093990:intron 35.0%
GCTAATAAGACTATTCTTCC+TGG - chr1_2:77097057-77097076 Msa0093990:intron 35.0%
GGATTTATTGGAACAGTTGA+AGG - chr1_2:77097120-77097139 Msa0093990:intron 35.0%
TCAGACTTTACTTATCTCTC+AGG + chr1_2:77097371-77097390 None:intergenic 35.0%
GCCCTAACTGAAACAATTAA+TGG + chr1_2:77097394-77097413 None:intergenic 35.0%
CTTAAACTAGAAATGGATGG+TGG + chr1_2:77097466-77097485 None:intergenic 35.0%
AATGAAGTGATTGCCACAAT+TGG - chr1_2:77097634-77097653 Msa0093990:intron 35.0%
! CAAATGAAAGAAGAGGTACA+TGG + chr1_2:77097711-77097730 None:intergenic 35.0%
CATGTACCTCTTCTTTCATT+TGG - chr1_2:77097709-77097728 Msa0093990:intron 35.0%
TGTACCTCTTCTTTCATTTG+GGG - chr1_2:77097711-77097730 Msa0093990:intron 35.0%
GACGATGATTATGGAAGAAA+CGG - chr1_2:77097868-77097887 Msa0093990:CDS 35.0%
CAAGATACTGATATCATCCT+TGG + chr1_2:77097971-77097990 None:intergenic 35.0%
AGTCATCATTCCAAGATTCT+TGG + chr1_2:77098076-77098095 None:intergenic 35.0%
AATCTTGGAATGATGACTAG+TGG - chr1_2:77098078-77098097 Msa0093990:CDS 35.0%
TCCTTCAAAGTTGGATTCAA+TGG - chr1_2:77098128-77098147 Msa0093990:intron 35.0%
TCCATTGAATCCAACTTTGA+AGG + chr1_2:77098132-77098151 None:intergenic 35.0%
AACACATTGAAACTCCTTCA+AGG - chr1_2:77098165-77098184 Msa0093990:intron 35.0%
CTTGATGCTTTACTCAAAGA+AGG - chr1_2:77098336-77098355 Msa0093990:CDS 35.0%
! CTTTTGTGTCAATCAGCTTA+GGG + chr1_2:77098386-77098405 None:intergenic 35.0%
!! CTTTTGAGAATGAACTTCAC+TGG - chr1_2:77098468-77098487 Msa0093990:CDS 35.0%
! GGTTATTGGTCTAATTACTC+CGG - chr1_2:77098585-77098604 Msa0093990:CDS 35.0%
! TTGCTTATTGAAGTGTTAGG+TGG + chr1_2:77098648-77098667 None:intergenic 35.0%
! TGGTTGCTTATTGAAGTGTT+AGG + chr1_2:77098651-77098670 None:intergenic 35.0%
TCAAAGGCTTTCCATTGTTT+GGG + chr1_2:77098734-77098753 None:intergenic 35.0%
AATATATATTGTCGCGGAAC+GGG + chr1_2:77098876-77098895 None:intergenic 35.0%
AATTGAGTTTCCGATTTCCA+AGG - chr1_2:77099048-77099067 Msa0093990:CDS 35.0%
ATTGAGTTTCCGATTTCCAA+GGG - chr1_2:77099049-77099068 Msa0093990:CDS 35.0%
!! CTGCATCAAAGTTCTGAAAA+AGG + chr1_2:77099123-77099142 None:intergenic 35.0%
CCAAAATCCTTGTTCTGTTT+GGG + chr1_2:77099168-77099187 None:intergenic 35.0%
TCCAAAATCCTTGTTCTGTT+TGG + chr1_2:77099169-77099188 None:intergenic 35.0%
TTTGAGCAGTGAATGGTTTA+AGG + chr1_2:77099270-77099289 None:intergenic 35.0%
AGCACCAACAAAAAGGAAAA+AGG + chr1_2:77099311-77099330 None:intergenic 35.0%
ATACTACAGCACCAACAAAA+AGG + chr1_2:77099318-77099337 None:intergenic 35.0%
!!! TTTTTGTTGGTGCTGTAGTA+TGG - chr1_2:77099317-77099336 Msa0093990:CDS 35.0%
!! GATTGTCATAATTTGCTTCC+TGG + chr1_2:77099383-77099402 None:intergenic 35.0%
!! AGATTTGTTCCTTCTTTTGC+AGG - chr1_2:77099504-77099523 Msa0093990:CDS 35.0%
GAAAGTAAACCTGCAAAAGA+AGG + chr1_2:77099516-77099535 None:intergenic 35.0%
GGAGATTTGTGCTAATCATA+TGG - chr1_2:77099674-77099693 Msa0093990:intron 35.0%
GTCAATTCCTTCAATTTGTG+AGG + chr1_2:77099773-77099792 None:intergenic 35.0%
CAACCAATTGGAATTCAAGA+CGG - chr1_2:77099811-77099830 Msa0093990:intron 35.0%
AACCAATTGGAATTCAAGAC+GGG - chr1_2:77099812-77099831 Msa0093990:intron 35.0%
CTCAATGAAACTATCCTAGA+TGG + chr1_2:77099880-77099899 None:intergenic 35.0%
AGTTTCATTGAGAGATCCAA+AGG - chr1_2:77099888-77099907 Msa0093990:intron 35.0%
GGAAATGTGTTCACTAAAAG+TGG - chr1_2:77100027-77100046 Msa0093990:intron 35.0%
ATGTGTTCACTAAAAGTGGT+TGG - chr1_2:77100031-77100050 Msa0093990:intron 35.0%
TGTGTTCACTAAAAGTGGTT+GGG - chr1_2:77100032-77100051 Msa0093990:intron 35.0%
ATCTCTAATGGCATGCTTTA+CGG - chr1_2:77100066-77100085 Msa0093990:intron 35.0%
GAGTTACATAAGAAGGGTTT+AGG + chr1_2:77100100-77100119 None:intergenic 35.0%
ATGTTCAATACCATGATCAC+AGG - chr1_2:77100233-77100252 Msa0093990:CDS 35.0%
TGTTCAATACCATGATCACA+GGG - chr1_2:77100234-77100253 Msa0093990:CDS 35.0%
GTTGACATATCAATAGCAAG+GGG + chr1_2:77100276-77100295 None:intergenic 35.0%
CAGTTGACATATCAATAGCA+AGG + chr1_2:77100278-77100297 None:intergenic 35.0%
AACTCTCTCTTAAAAGCTTC+TGG - chr1_2:77100400-77100419 Msa0093990:five_prime_UTR 35.0%
ACTCTCTCTTAAAAGCTTCT+GGG - chr1_2:77100401-77100420 Msa0093990:five_prime_UTR 35.0%
CAATACATGAAATTCATCCC+AGG - chr1_2:77100492-77100511 Msa0093990:intron 35.0%
! AGAAATGTTTTTCTTGGCCT+AGG + chr1_2:77100552-77100571 None:intergenic 35.0%
TTAGGCAGAAGAGTAAGAAA+AGG - chr1_2:77100640-77100659 Msa0093990:five_prime_UTR 35.0%
CAATAATTTCCTAGCCAAGA+AGG + chr1_2:77100866-77100885 None:intergenic 35.0%
AGAAAAAAGGCAAGCAATCT+TGG - chr1_2:77100913-77100932 Msa0093990:five_prime_UTR 35.0%
AACTTAGATACCGACATACC+TGG + chr1_2:77096642-77096661 None:intergenic 40.0%
!! TGAGTTCTGGTGTTGGTTTA+AGG - chr1_2:77096796-77096815 Msa0093990:CDS 40.0%
!! AATGGAGGTGTTAGGAGTAA+AGG - chr1_2:77096858-77096877 Msa0093990:CDS 40.0%
!! ATGGAGGTGTTAGGAGTAAA+GGG - chr1_2:77096859-77096878 Msa0093990:CDS 40.0%
GTGGATTCCAAATGAAGTTG+TGG - chr1_2:77096906-77096925 Msa0093990:CDS 40.0%
! GCTCCAATTTTCACAACAGT+TGG + chr1_2:77096964-77096983 None:intergenic 40.0%
ATTGGAAGATCAGCTCAACA+AGG - chr1_2:77097006-77097025 Msa0093990:intron 40.0%
TCTTAAACCTTCGGTTCTCA+CGG - chr1_2:77097327-77097346 Msa0093990:CDS 40.0%
AACACAGAGACTTGCAGATA+GGG + chr1_2:77097552-77097571 None:intergenic 40.0%
AAACACAGAGACTTGCAGAT+AGG + chr1_2:77097553-77097572 None:intergenic 40.0%
! TGATGTAGCTTTGCAGTTGA+TGG - chr1_2:77097609-77097628 Msa0093990:intron 40.0%
GATGATATGAGCTATTCCTG+AGG + chr1_2:77097668-77097687 None:intergenic 40.0%
TGGAAACTGCAGAGAAGATA+GGG + chr1_2:77097749-77097768 None:intergenic 40.0%
ATGGAAACTGCAGAGAAGAT+AGG + chr1_2:77097750-77097769 None:intergenic 40.0%
GATACTGATATCATCCTTGG+TGG + chr1_2:77097968-77097987 None:intergenic 40.0%
GTTCATGTTAATCCCGATCA+TGG - chr1_2:77098030-77098049 Msa0093990:CDS 40.0%
TGATGACTAGTGGTTATGTG+TGG - chr1_2:77098088-77098107 Msa0093990:intron 40.0%
! ATGTGTGGATTGCAACAGAT+TGG - chr1_2:77098103-77098122 Msa0093990:intron 40.0%
!! AGATTGGCTTCCTTCAAAGT+TGG - chr1_2:77098119-77098138 Msa0093990:intron 40.0%
TCAAAGCTACAACACCTTGA+AGG + chr1_2:77098182-77098201 None:intergenic 40.0%
!! TTCAAGGTGTTGTAGCTTTG+AGG - chr1_2:77098181-77098200 Msa0093990:intron 40.0%
! TCTAGGTTGAAGAACGCAAA+CGG - chr1_2:77098243-77098262 Msa0093990:intron 40.0%
GATGCTTTACTCAAAGAAGG+TGG - chr1_2:77098339-77098358 Msa0093990:CDS 40.0%
! CCTTTTGTGTCAATCAGCTT+AGG + chr1_2:77098387-77098406 None:intergenic 40.0%
CCTAAGCTGATTGACACAAA+AGG - chr1_2:77098384-77098403 Msa0093990:CDS 40.0%
! AAAAGTGTAGGGAGAAAGTC+CGG + chr1_2:77098453-77098472 None:intergenic 40.0%
!! ATGAACTTCACTGGTTTGAG+TGG - chr1_2:77098477-77098496 Msa0093990:CDS 40.0%
ATCCTTAACATCGGTGAATC+TGG - chr1_2:77098549-77098568 Msa0093990:CDS 40.0%
AACCAGATTCACCGATGTTA+AGG + chr1_2:77098554-77098573 None:intergenic 40.0%
AGGAGCTAAAACTGATAGAC+CGG + chr1_2:77098607-77098626 None:intergenic 40.0%
GGTCTCTTGTACAAAACTTC+AGG + chr1_2:77098627-77098646 None:intergenic 40.0%
GAAACTATAGCTACACCAAG+AGG - chr1_2:77098699-77098718 Msa0093990:CDS 40.0%
TATAGCTACACCAAGAGGAT+GGG - chr1_2:77098704-77098723 Msa0093990:CDS 40.0%
CTCAAAGGCTTTCCATTGTT+TGG + chr1_2:77098735-77098754 None:intergenic 40.0%
!! CTACCTCGAGTTTGTTTCTA+AGG - chr1_2:77098779-77098798 Msa0093990:CDS 40.0%
TGTCCTTAGAAACAAACTCG+AGG + chr1_2:77098785-77098804 None:intergenic 40.0%
AAGAATCCACCAGGAGTTAA+AGG - chr1_2:77098804-77098823 Msa0093990:CDS 40.0%
ATGCAATAGCCTTTAACTCC+TGG + chr1_2:77098816-77098835 None:intergenic 40.0%
GGGATAAGGCAACAAGTTTA+TGG + chr1_2:77098856-77098875 None:intergenic 40.0%
ATTAACAAGCTGGCTGTAGT+CGG + chr1_2:77098922-77098941 None:intergenic 40.0%
TGATCATATGGCTCAGAACA+AGG - chr1_2:77099000-77099019 Msa0093990:CDS 40.0%
CTTGAAACTCCCTTGGAAAT+CGG + chr1_2:77099061-77099080 None:intergenic 40.0%
CAATTGTCCCAAACAGAACA+AGG - chr1_2:77099158-77099177 Msa0093990:CDS 40.0%
! CCCAAACAGAACAAGGATTT+TGG - chr1_2:77099165-77099184 Msa0093990:CDS 40.0%
GGATTTCACTCAACCTTTCA+TGG - chr1_2:77099186-77099205 Msa0093990:CDS 40.0%
ACTCAACCTTTCATGGAATC+AGG - chr1_2:77099193-77099212 Msa0093990:CDS 40.0%
CTCAACCTTTCATGGAATCA+GGG - chr1_2:77099194-77099213 Msa0093990:CDS 40.0%
! CTTGATTTGATCTCCTTGAC+AGG + chr1_2:77099235-77099254 None:intergenic 40.0%
ATGGTTTAAGGAAAGCCCAA+GGG + chr1_2:77099258-77099277 None:intergenic 40.0%
AATGGTTTAAGGAAAGCCCA+AGG + chr1_2:77099259-77099278 None:intergenic 40.0%
AACCATTCACTGCTCAAATG+TGG - chr1_2:77099272-77099291 Msa0093990:CDS 40.0%
! AACAAAAAGGAAAAAGGCGC+CGG + chr1_2:77099305-77099324 None:intergenic 40.0%
TAGTATGGATTCTTGAGCAC+AGG - chr1_2:77099332-77099351 Msa0093990:CDS 40.0%
AAGAATGGCTTGAGAAACTC+TGG + chr1_2:77099442-77099461 None:intergenic 40.0%
AAAACACTGTGAGTGGTCTT+GGG - chr1_2:77099653-77099672 Msa0093990:intron 40.0%
CAGCTATCCTCACAAATTGA+AGG - chr1_2:77099763-77099782 Msa0093990:intron 40.0%
GGAATTGACAGCTTGATATC+AGG - chr1_2:77099784-77099803 Msa0093990:intron 40.0%
! GAGAGATCCAAAGGTATATG+AGG - chr1_2:77099897-77099916 Msa0093990:intron 40.0%
GTGTTCACTAAAAGTGGTTG+GGG - chr1_2:77100033-77100052 Msa0093990:intron 40.0%
! ATTTGTCGTGGATCTTTTGC+AGG + chr1_2:77100329-77100348 None:intergenic 40.0%
TGCAAAAGATCCACGACAAA+TGG - chr1_2:77100328-77100347 Msa0093990:CDS 40.0%
CTCTCTCTTAAAAGCTTCTG+GGG - chr1_2:77100402-77100421 Msa0093990:five_prime_UTR 40.0%
TGGGGTCTCTTTCTTATATG+TGG - chr1_2:77100420-77100439 Msa0093990:intron 40.0%
CAAACTGATCATCTAAGCTC+TGG + chr1_2:77100674-77100693 None:intergenic 40.0%
AATTTCCTAGCCAAGAAGGA+TGG + chr1_2:77100862-77100881 None:intergenic 40.0%
!! ACTTGACAGGTGTTGAGTTC+TGG - chr1_2:77096783-77096802 Msa0093990:CDS 45.0%
CTTAAACCTTCGGTTCTCAC+GGG - chr1_2:77097328-77097347 Msa0093990:CDS 45.0%
TTATTTCCCGTGAGAACCGA+AGG + chr1_2:77097337-77097356 None:intergenic 45.0%
TGAGGATTGTGGACCAATTG+TGG + chr1_2:77097650-77097669 None:intergenic 45.0%
ACAATTGGTCCACAATCCTC+AGG - chr1_2:77097649-77097668 Msa0093990:intron 45.0%
TGAGCTATTCCTGAGGATTG+TGG + chr1_2:77097661-77097680 None:intergenic 45.0%
GTTGCCCCAAATGAAAGAAG+AGG + chr1_2:77097718-77097737 None:intergenic 45.0%
ACTGCAGAGAAGATAGGGTA+GGG + chr1_2:77097744-77097763 None:intergenic 45.0%
AACTGCAGAGAAGATAGGGT+AGG + chr1_2:77097745-77097764 None:intergenic 45.0%
! TGCGTGGTTCGGACAAAATA+TGG + chr1_2:77097769-77097788 None:intergenic 45.0%
TACAAAGCCGCATTATCTCC+TGG - chr1_2:77097940-77097959 Msa0093990:CDS 45.0%
! TCTTCGCTTCGCGTTTTCAA+TGG - chr1_2:77098423-77098442 Msa0093990:CDS 45.0%
! ACATCGGTGAATCTGGTTTC+CGG - chr1_2:77098556-77098575 Msa0093990:CDS 45.0%
! TAGACCAATAACCGACTCTC+CGG + chr1_2:77098578-77098597 None:intergenic 45.0%
! CTGTTCAATGTTTTGTGGCC+TGG - chr1_2:77098675-77098694 Msa0093990:CDS 45.0%
GGTGTAGCTATAGTTTCTCC+AGG + chr1_2:77098696-77098715 None:intergenic 45.0%
CTATAGCTACACCAAGAGGA+TGG - chr1_2:77098703-77098722 Msa0093990:CDS 45.0%
TTTGGGAAAACCCATCCTCT+TGG + chr1_2:77098717-77098736 None:intergenic 45.0%
!! GGATGGGTTTTCCCAAACAA+TGG - chr1_2:77098720-77098739 Msa0093990:CDS 45.0%
!! TGAGGCACTGCTATTCTCAA+AGG + chr1_2:77098750-77098769 None:intergenic 45.0%
TCGAGGTAGCTTATTCTGTG+AGG + chr1_2:77098768-77098787 None:intergenic 45.0%
TCTAAGGACAAGAATCCACC+AGG - chr1_2:77098795-77098814 Msa0093990:CDS 45.0%
CAATAGCCTTTAACTCCTGG+TGG + chr1_2:77098813-77098832 None:intergenic 45.0%
TTAACAAGCTGGCTGTAGTC+GGG + chr1_2:77098921-77098940 None:intergenic 45.0%
!! CTACAGCCAGCTTGTTAATC+AGG - chr1_2:77098923-77098942 Msa0093990:CDS 45.0%
GTGCAACCTGATTAACAAGC+TGG + chr1_2:77098932-77098951 None:intergenic 45.0%
GAAGACACTTGAAACTCCCT+TGG + chr1_2:77099068-77099087 None:intergenic 45.0%
CAGAACTTTGATGCAGCTGT+TGG - chr1_2:77099127-77099146 Msa0093990:CDS 45.0%
! GGTAGTTGTTGTTCCTGTCA+AGG - chr1_2:77099219-77099238 Msa0093990:CDS 45.0%
AGGAGATCAAATCAAGCCCT+TGG - chr1_2:77099239-77099258 Msa0093990:CDS 45.0%
GGAGATCAAATCAAGCCCTT+GGG - chr1_2:77099240-77099259 Msa0093990:CDS 45.0%
CACCACATTTGAGCAGTGAA+TGG + chr1_2:77099277-77099296 None:intergenic 45.0%
GCTCAAATGTGGTGTGTTAC+CGG - chr1_2:77099283-77099302 Msa0093990:CDS 45.0%
! GGCGCCTTTTTCCTTTTTGT+TGG - chr1_2:77099304-77099323 Msa0093990:CDS 45.0%
!! GTCATAATTTGCTTCCTGGG+TGG + chr1_2:77099379-77099398 None:intergenic 45.0%
CTCAAGCCATTCTTGATGCA+CGG - chr1_2:77099448-77099467 Msa0093990:CDS 45.0%
! TGGTTGCTATGATTTGGCAC+AGG - chr1_2:77099628-77099647 Msa0093990:intron 45.0%
ACAGGAGAAAACACTGTGAG+TGG - chr1_2:77099646-77099665 Msa0093990:intron 45.0%
GAAAACACTGTGAGTGGTCT+TGG - chr1_2:77099652-77099671 Msa0093990:intron 45.0%
GACCCGTCTTGAATTCCAAT+TGG + chr1_2:77099817-77099836 None:intergenic 45.0%
AAGACGGGTCATTTGCAAGA+AGG - chr1_2:77099827-77099846 Msa0093990:intron 45.0%
!! AACGGTTCTGAACTTGCAGT+TGG + chr1_2:77100007-77100026 None:intergenic 45.0%
AACTGCAAGTTCAGAACCGT+TGG - chr1_2:77100006-77100025 Msa0093990:intron 45.0%
ATGATCACAGGGATTCCAGA+GGG - chr1_2:77100245-77100264 Msa0093990:CDS 45.0%
GTCTTGAAAGCCATTTGTCG+TGG + chr1_2:77100341-77100360 None:intergenic 45.0%
TGGCTTTCAAGACAGAACTG+TGG - chr1_2:77100348-77100367 Msa0093990:CDS 45.0%
! GTTTTTCTTGGCCTAGGTGA+CGG + chr1_2:77100546-77100565 None:intergenic 45.0%
AGATTCCATCCTTCTTGGCT+AGG - chr1_2:77100854-77100873 Msa0093990:five_prime_UTR 45.0%
!! CAGGTGTTGAGTTCTGGTGT+TGG - chr1_2:77096789-77096808 Msa0093990:CDS 50.0%
AATAGTCGCTGTGCGTGGTT+CGG + chr1_2:77097780-77097799 None:intergenic 50.0%
CTGAAAATAGTCGCTGTGCG+TGG + chr1_2:77097785-77097804 None:intergenic 50.0%
GATGCGCTAGCAAAGAAACG+CGG - chr1_2:77097907-77097926 Msa0093990:CDS 50.0%
ATTATCTCCTGGAGCCACCA+AGG - chr1_2:77097951-77097970 Msa0093990:CDS 50.0%
! ATATCATCCTTGGTGGCTCC+AGG + chr1_2:77097961-77097980 None:intergenic 50.0%
GTTGAAGAACGCAAACGGCA+CGG - chr1_2:77098248-77098267 Msa0093990:intron 50.0%
! TCGCTTCGCGTTTTCAATGG+CGG - chr1_2:77098426-77098445 Msa0093990:CDS 50.0%
! GAATCTGGTTTCCGGAGAGT+CGG - chr1_2:77098564-77098583 Msa0093990:CDS 50.0%
GTTTCCGGAGAGTCGGTTAT+TGG - chr1_2:77098571-77098590 Msa0093990:CDS 50.0%
TATTGTCGCGGAACGGGATA+AGG + chr1_2:77098870-77098889 None:intergenic 50.0%
ACCTTTCATGGAATCAGGGC+TGG - chr1_2:77099198-77099217 Msa0093990:CDS 50.0%
ACCAGCCCTGATTCCATGAA+AGG + chr1_2:77099202-77099221 None:intergenic 50.0%
TCTTGAGCACAGGCACAATC+CGG - chr1_2:77099342-77099361 Msa0093990:CDS 50.0%
AGCAAGCCGTGCATCAAGAA+TGG + chr1_2:77099457-77099476 None:intergenic 50.0%
! AGGGCGTCCTCATATACCTT+TGG + chr1_2:77099907-77099926 None:intergenic 50.0%
!! CTCTGGAATCCCTGTGATCA+TGG + chr1_2:77100246-77100265 None:intergenic 50.0%
CATGATCACAGGGATTCCAG+AGG - chr1_2:77100244-77100263 Msa0093990:CDS 50.0%
ATTCATCCCAGGGAGTGAGA+TGG - chr1_2:77100503-77100522 Msa0093990:intron 50.0%
CAACTTCCATCTCACTCCCT+GGG + chr1_2:77100512-77100531 None:intergenic 50.0%
TCAACTTCCATCTCACTCCC+TGG + chr1_2:77100513-77100532 None:intergenic 50.0%
GAGTGAGATGGAAGTTGACC+AGG - chr1_2:77100515-77100534 Msa0093990:intron 50.0%
ACCAGGAAAATCCGTCACCT+AGG - chr1_2:77100532-77100551 Msa0093990:intron 50.0%
GGTGGCTCCAGGAGATAATG+CGG + chr1_2:77097950-77097969 None:intergenic 55.0%
! TCGCGTTTTCAATGGCGGTC+CGG - chr1_2:77098431-77098450 Msa0093990:CDS 55.0%
TTTGCTTCCTGGGTGGACCT+CGG + chr1_2:77099372-77099391 None:intergenic 55.0%
TAGCTGCTGCACTGTGAGGA+TGG + chr1_2:77099749-77099768 None:intergenic 55.0%
AGGATAGCTGCTGCACTGTG+AGG + chr1_2:77099753-77099772 None:intergenic 55.0%
TCCATTCGGTCCACGCGTAA+GGG + chr1_2:77099926-77099945 None:intergenic 55.0%
GCTACAACCCCTCCTCCATT+CGG + chr1_2:77099940-77099959 None:intergenic 55.0%
!!! GCCTAGGTGACGGATTTTCC+TGG + chr1_2:77100536-77100555 None:intergenic 55.0%
AGGCACAATCCGGAGTTCCG+AGG - chr1_2:77099352-77099371 Msa0093990:CDS 60.0%
TATGAGGACGCCCTTACGCG+TGG - chr1_2:77099913-77099932 Msa0093990:intron 60.0%
CTCCATTCGGTCCACGCGTA+AGG + chr1_2:77099927-77099946 None:intergenic 60.0%
CTTACGCGTGGACCGAATGG+AGG - chr1_2:77099925-77099944 Msa0093990:intron 60.0%
TAGCAAGGGGAGAGTCCCTC+TGG + chr1_2:77100263-77100282 None:intergenic 60.0%
CTGGGTGGACCTCGGAACTC+CGG + chr1_2:77099364-77099383 None:intergenic 65.0%
GCCCTTACGCGTGGACCGAA+TGG - chr1_2:77099922-77099941 Msa0093990:intron 65.0%
ACGCGTGGACCGAATGGAGG+AGG - chr1_2:77099928-77099947 Msa0093990:intron 65.0%
CGCGTGGACCGAATGGAGGA+GGG - chr1_2:77099929-77099948 Msa0093990:intron 65.0%
GCGTGGACCGAATGGAGGAG+GGG - chr1_2:77099930-77099949 Msa0093990:intron 65.0%
CGGAGTTCCGAGGTCCACCC+AGG - chr1_2:77099362-77099381 Msa0093990:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77096219 77101010 77096219 ID=Msa0093990;Name=Msa0093990
chr1_2 mRNA 77096219 77101010 77096219 ID=Msa0093990-mRNA-1;Parent=Msa0093990;Name=Msa0093990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=491|1|1|1|0.71|0.5|8|267|932
chr1_2 exon 77096219 77096457 77096219 ID=Msa0093990-mRNA-1:exon:27301;Parent=Msa0093990-mRNA-1
chr1_2 exon 77096491 77096974 77096491 ID=Msa0093990-mRNA-1:exon:27300;Parent=Msa0093990-mRNA-1
chr1_2 exon 77097170 77097579 77097170 ID=Msa0093990-mRNA-1:exon:27299;Parent=Msa0093990-mRNA-1
chr1_2 exon 77097672 77097703 77097672 ID=Msa0093990-mRNA-1:exon:27298;Parent=Msa0093990-mRNA-1
chr1_2 exon 77097822 77098099 77097822 ID=Msa0093990-mRNA-1:exon:27297;Parent=Msa0093990-mRNA-1
chr1_2 exon 77098273 77099612 77098273 ID=Msa0093990-mRNA-1:exon:27296;Parent=Msa0093990-mRNA-1
chr1_2 exon 77100088 77100437 77100088 ID=Msa0093990-mRNA-1:exon:27295;Parent=Msa0093990-mRNA-1
chr1_2 exon 77100587 77101010 77100587 ID=Msa0093990-mRNA-1:exon:27294;Parent=Msa0093990-mRNA-1
chr1_2 five_prime_UTR 77100587 77101010 77100587 ID=Msa0093990-mRNA-1:five_prime_utr;Parent=Msa0093990-mRNA-1
chr1_2 five_prime_UTR 77100371 77100437 77100371 ID=Msa0093990-mRNA-1:five_prime_utr;Parent=Msa0093990-mRNA-1
chr1_2 CDS 77100088 77100370 77100088 ID=Msa0093990-mRNA-1:cds;Parent=Msa0093990-mRNA-1
chr1_2 CDS 77098273 77099612 77098273 ID=Msa0093990-mRNA-1:cds;Parent=Msa0093990-mRNA-1
chr1_2 CDS 77097822 77098099 77097822 ID=Msa0093990-mRNA-1:cds;Parent=Msa0093990-mRNA-1
chr1_2 CDS 77097672 77097703 77097672 ID=Msa0093990-mRNA-1:cds;Parent=Msa0093990-mRNA-1
chr1_2 CDS 77097170 77097579 77097170 ID=Msa0093990-mRNA-1:cds;Parent=Msa0093990-mRNA-1
chr1_2 CDS 77096519 77096974 77096519 ID=Msa0093990-mRNA-1:cds;Parent=Msa0093990-mRNA-1
chr1_2 three_prime_UTR 77096491 77096518 77096491 ID=Msa0093990-mRNA-1:three_prime_utr;Parent=Msa0093990-mRNA-1
chr1_2 three_prime_UTR 77096219 77096457 77096219 ID=Msa0093990-mRNA-1:three_prime_utr;Parent=Msa0093990-mRNA-1
Gene Sequence

>Msa0093990

ATGGAGGTGTTAGGAGTAAAGGGTTTTGTCCTCTTGTTTTTCTGTTTGTGGATTCCAAATGAAGTTGTGGCTATAATTGGAAACTCTACTGTTTCTTCTAGACCAACTGTTGTGAAAATTGGAGCACTGTTTACTGTTGATTCTGTGATTGGAAGATCAGCTCAACAAGGAATCAAAACTGCAATTGATGATGTTAATGCTAATAAGACTATTCTTCCTGGTATTAAAATGGATGTTATTTTTCATGATACAAATTGCAGTGGATTTATTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAGTGATTGCCACAATTGGTCCACAATCCTCAGGAATAGCTCATATCATCGCTCATGTAGCTAATGAACTCCATGTACCTCTTCTTTCATTTGGGGCAACAGACCCTACCCTATCTTCTCTGCAGTTTCCATATTTTGTCCGAACCACGCACAGCGACTATTTTCAGATGTATGCAATTGCAGACATTGTTGATTTTTATAGATGGAGGCAAGTAATTGCCATTTTTGTAGACGATGATTATGGAAGAAACGGAATTTCAATACTCGGAGATGCGCTAGCAAAGAAACGCGGCAAGATATCTTACAAAGCCGCATTATCTCCTGGAGCCACCAAGGATGATATCAGTATCTTGCTAAATAGTGTGAACTTAATGGAATCAAGAGTCTTTGTTGTTCATGTTAATCCCGATCATGGTTTGAATATTTTTACTATTGCCAAGAATCTTGGAATGATGACTAGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAAGTTGGATTCAATGGAGCCAGTTGATACTAACACATTGAAACTCCTTCAAGGTGTTGTAGCTTTGAGGCATCACACTCCTGATACAAATCTCAAAAAAAGTTTTTTCTCTAGGTTGAAGAACGCAAACGGCACGGAAACTACAAGCTTCAATTCTTATGCTTTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTTGATGCTTTACTCAAAGAAGGTGGAAACATATCTTTCTCATCTGACCCTAAGCTGATTGACACAAAAGGAAGCATGTTGCATTTGTCTTCGCTTCGCGTTTTCAATGGCGGTCCGGACTTTCTCCCTACACTTTTGAGAATGAACTTCACTGGTTTGAGTGGTCAGATTCAGTTCAATGTAGACAAGAATCTAATTCGTCCATCATATGATATCCTTAACATCGGTGAATCTGGTTTCCGGAGAGTCGGTTATTGGTCTAATTACTCCGGTCTATCAGTTTTAGCTCCTGAAGTTTTGTACAAGAGACCACCTAACACTTCAATAAGCAACCAAAAACTGTTCAATGTTTTGTGGCCTGGAGAAACTATAGCTACACCAAGAGGATGGGTTTTCCCAAACAATGGAAAGCCTTTGAGAATAGCAGTGCCTCACAGAATAAGCTACCTCGAGTTTGTTTCTAAGGACAAGAATCCACCAGGAGTTAAAGGCTATTGCATTGATATCTTCGAAGCAGCCATAAACTTGTTGCCTTATCCCGTTCCGCGACAATATATATTATTCGGAGATGGTAAAAGAAATCCCGACTACAGCCAGCTTGTTAATCAGGTTGCACTAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGAACAAGGATTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCTTGGGCTTTCCTTAAACCATTCACTGCTCAAATGTGGTGTGTTACCGGCGCCTTTTTCCTTTTTGTTGGTGCTGTAGTATGGATTCTTGAGCACAGGCACAATCCGGAGTTCCGAGGTCCACCCAGGAAGCAAATTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAAAACACTGTGAGTGGTCTTGGGAGATTTGTGCTAATCATATGGCTTTTTGTAGTATTAATTATCAATTCAAGCTACACAGCAAGCTTAACATCCATCCTCACAGTGCAGCAGCTATCCTCACAAATTGAAGGAATTGACAGCTTGATATCAGGTAATCAACCAATTGGAATTCAAGACGGGTCATTTGCAAGAAGGTATCTGATAGATGAACTCAATATACAACCATCTAGGATAGTTTCATTGAGAGATCCAAAGGTATATGAGGACGCCCTTACGCGTGGACCGAATGGAGGAGGGGTTGTAGCTATTGTTGATGAGCTTCCTTATATTGAACTCTTTATGTCTGGTACCAACTGCAAGTTCAGAACCGTTGGAAATGTGTTCACTAAAAGTGGTTGGGGATTTGGATTCCAGAGGGACTCTCCCCTTGCTATTGATATGTCAACTGCAATTCTTCAACTCTCAGAAAATGGTGACCTGCAAAAGATCCACGACAAATGGCTTTCAAGACAGAACTGTGGTGCAAAAGTTAACGACACTGATTCAAATGAACTCTCTCTTAAAAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTCTCATTGCTTTGATTGCATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATTCATCCCAGGGAGTGAGATGGAAGTTGACCAGGAAAATCCGTCACCTAGGCCAAGAAAAACATTTCTATCTTCGAGAAGCTTCAAAGACTTGATTGTATTTGTGGATAAGAGAGAGAGAGAAATAAAGGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGTGACCAGAGCTTAGATGATCAGTTTGATTCACCACCTACCTAA
Protein sequence

>Msa0093990

MEVLGVKGFVLLFFCLWIPNEVVAIIGNSTVSSRPTVVKIGALFTVDSVIGRSAQQGIKTAIDDVNANKTILPGIKMDVIFHDTNCSGFIGTVEALQLMENEVIATIGPQSSGIAHIIAHVANELHVPLLSFGATDPTLSSLQFPYFVRTTHSDYFQMYAIADIVDFYRWRQVIAIFVDDDYGRNGISILGDALAKKRGKISYKAALSPGATKDDISILLNSVNLMESRVFVVHVNPDHGLNIFTIAKNLGMMTSGYVWIATDWLPSKLDSMEPVDTNTLKLLQGVVALRHHTPDTNLKKSFFSRLKNANGTETTSFNSYALYAYDSVWLAAYALDALLKEGGNISFSSDPKLIDTKGSMLHLSSLRVFNGGPDFLPTLLRMNFTGLSGQIQFNVDKNLIRPSYDILNIGESGFRRVGYWSNYSGLSVLAPEVLYKRPPNTSISNQKLFNVLWPGETIATPRGWVFPNNGKPLRIAVPHRISYLEFVSKDKNPPGVKGYCIDIFEAAINLLPYPVPRQYILFGDGKRNPDYSQLVNQVALNNFDAAVGDVTIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPRKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGNQPIGIQDGSFARRYLIDELNIQPSRIVSLRDPKVYEDALTRGPNGGGVVAIVDELPYIELFMSGTNCKFRTVGNVFTKSGWGFGFQRDSPLAIDMSTAILQLSENGDLQKIHDKWLSRQNCGAKVNDTDSNELSLKSFWGLFLICGIACLIALIAFFVRVFCQYMKFIPGSEMEVDQENPSPRPRKTFLSSRSFKDLIVFVDKREREIKEILRQKSKKRRRDQSLDDQFDSPPT*