AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1448730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448730 MtrunA17_Chr2g0322691 96.667 930 31 0 1 930 1 930 0.0 1855
Msa1448730 MtrunA17_Chr3g0144141 54.646 904 383 9 32 931 70 950 0.0 994
Msa1448730 MtrunA17_Chr8g0370261 51.929 907 413 7 20 921 18 906 0.0 972
Msa1448730 MtrunA17_Chr5g0407171 50.706 921 432 8 6 919 2 907 0.0 946
Msa1448730 MtrunA17_Chr2g0322681 49.616 911 447 8 6 912 1 903 0.0 904
Msa1448730 MtrunA17_Chr8g0370281 51.852 837 370 7 99 918 1 821 0.0 840
Msa1448730 MtrunA17_Chr3g0136621 35.301 881 533 20 9 862 9 879 5.25e-160 495
Msa1448730 MtrunA17_Chr3g0136611 33.262 938 576 22 15 927 14 926 7.04e-154 479
Msa1448730 MtrunA17_Chr4g0046101 32.432 851 491 23 32 852 36 832 6.69e-131 416
Msa1448730 MtrunA17_Chr2g0283231 30.907 948 548 30 10 925 14 886 4.85e-125 401
Msa1448730 MtrunA17_Chr2g0283261 28.046 870 530 25 16 859 17 816 9.11e-98 327
Msa1448730 MtrunA17_Chr5g0424541 29.953 858 512 27 31 851 33 838 2.25e-95 321
Msa1448730 MtrunA17_Chr2g0283241 27.797 867 536 23 14 859 14 811 1.30e-93 317
Msa1448730 MtrunA17_Chr5g0424521 30.559 733 432 22 101 805 7 690 1.64e-83 283
Msa1448730 MtrunA17_Chr7g0230081 26.531 882 523 30 34 864 48 855 1.56e-77 272
Msa1448730 MtrunA17_Chr2g0283251 27.426 773 476 24 32 783 32 740 3.39e-76 265
Msa1448730 MtrunA17_Chr7g0230091 29.936 628 351 18 247 851 6 567 4.96e-75 259
Msa1448730 MtrunA17_Chr2g0283211 29.431 615 333 18 187 786 2 530 1.50e-69 241
Msa1448730 MtrunA17_Chr6g0467751 33.915 401 242 10 473 853 46 443 7.59e-64 223
Msa1448730 MtrunA17_Chr5g0424621 27.125 553 328 22 31 553 33 540 7.89e-35 140
Msa1448730 MtrunA17_Chr8g0370291 42.254 71 40 1 29 98 22 92 1.21e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448730 AT1G05200.6 67.691 879 278 4 34 909 57 932 0.0 1263
Msa1448730 AT1G05200.2 67.691 879 278 4 34 909 57 932 0.0 1263
Msa1448730 AT1G05200.1 67.691 879 278 4 34 909 57 932 0.0 1263
Msa1448730 AT2G32390.5 65.490 878 297 3 38 909 48 925 0.0 1187
Msa1448730 AT1G05200.7 69.180 756 227 2 34 785 57 810 0.0 1118
Msa1448730 AT1G05200.3 69.180 756 227 2 34 785 57 810 0.0 1118
Msa1448730 AT2G32390.2 66.261 821 271 3 95 909 3 823 0.0 1118
Msa1448730 AT2G32390.1 66.056 819 272 3 97 909 49 867 0.0 1113
Msa1448730 AT1G42540.1 54.989 902 388 10 30 925 21 910 0.0 1004
Msa1448730 AT1G42540.4 54.989 902 388 10 30 925 21 910 0.0 1004
Msa1448730 AT1G42540.2 54.989 902 388 10 30 925 21 910 0.0 1004
Msa1448730 AT3G51480.4 51.198 918 418 8 9 925 5 893 0.0 957
Msa1448730 AT3G51480.1 51.198 918 418 8 9 925 5 893 0.0 957
Msa1448730 AT4G35290.4 53.231 913 398 11 23 923 11 906 0.0 953
Msa1448730 AT4G35290.3 53.231 913 398 11 23 923 11 906 0.0 953
Msa1448730 AT4G35290.1 53.231 913 398 11 23 923 11 906 0.0 953
Msa1448730 AT4G35290.2 53.231 913 398 11 23 923 11 906 0.0 953
Msa1448730 AT4G35290.5 53.231 913 398 11 23 923 11 906 0.0 953
Msa1448730 AT2G17260.1 53.032 907 389 13 32 924 28 911 0.0 944
Msa1448730 AT1G05200.4 67.857 616 196 1 34 649 57 670 0.0 902
Msa1448730 AT3G51480.2 52.778 828 365 7 99 925 1 803 0.0 896
Msa1448730 AT2G32390.6 67.419 620 198 1 38 653 48 667 0.0 890
Msa1448730 AT1G05200.5 67.940 602 191 1 34 635 57 656 0.0 882
Msa1448730 AT2G32390.4 66.613 617 202 1 38 650 48 664 0.0 878
Msa1448730 AT2G32390.3 66.613 617 202 1 38 650 48 664 0.0 878
Msa1448730 AT2G32390.7 66.611 602 197 1 38 635 48 649 0.0 854
Msa1448730 AT3G51480.3 53.428 773 347 5 9 781 5 764 0.0 851
Msa1448730 AT4G35290.6 54.297 768 335 7 23 781 11 771 0.0 823
Msa1448730 AT2G32400.1 45.111 900 469 9 22 912 15 898 0.0 815
Msa1448730 AT1G42540.3 54.267 621 275 7 30 644 21 638 0.0 699
Msa1448730 AT2G29120.1 36.686 875 495 16 3 862 18 848 1.29e-162 501
Msa1448730 AT5G11210.9 35.294 799 493 12 90 879 7 790 3.23e-157 483
Msa1448730 AT5G11210.1 35.086 818 504 14 74 879 12 814 5.28e-157 483
Msa1448730 AT5G11180.2 34.282 843 505 16 38 856 36 853 1.17e-156 486
Msa1448730 AT5G11210.5 35.086 818 504 14 74 879 70 872 2.84e-156 483
Msa1448730 AT2G29100.1 34.921 882 512 19 9 872 7 844 3.63e-152 473
Msa1448730 AT2G29100.2 34.921 882 512 19 9 872 9 846 4.44e-152 473
Msa1448730 AT2G24720.1 36.000 750 446 14 95 829 88 818 2.99e-150 468
Msa1448730 AT2G24710.1 33.896 829 505 17 91 894 83 893 8.47e-149 463
Msa1448730 AT2G24710.3 33.896 829 505 17 91 894 107 917 1.07e-148 464
Msa1448730 AT5G27100.1 35.733 778 459 16 95 854 88 842 1.15e-148 463
Msa1448730 AT2G29110.1 35.731 862 502 19 9 854 10 835 6.59e-148 462
Msa1448730 AT2G29110.2 35.731 862 502 19 9 854 11 836 6.91e-148 462
Msa1448730 AT5G11210.3 36.888 694 415 11 96 781 21 699 1.28e-145 449
Msa1448730 AT5G11210.8 36.429 700 422 11 90 781 7 691 7.29e-145 447
Msa1448730 AT5G11210.7 36.429 700 422 11 90 781 7 691 9.26e-145 447
Msa1448730 AT5G11210.6 36.429 700 422 11 90 781 7 691 9.26e-145 447
Msa1448730 AT5G11210.10 37.179 702 413 13 91 781 89 773 5.02e-144 447
Msa1448730 AT5G11210.2 36.714 700 419 12 91 781 89 773 5.68e-144 447
Msa1448730 AT5G11210.4 36.714 700 419 12 91 781 89 773 5.68e-144 447
Msa1448730 AT4G31710.1 36.782 783 448 17 96 861 89 841 1.01e-141 444
Msa1448730 AT4G31710.2 36.143 783 446 17 96 861 112 857 1.27e-137 434
Msa1448730 AT2G24710.2 35.511 704 423 14 91 781 107 792 1.83e-136 428
Msa1448730 AT5G11180.1 31.473 842 469 18 38 856 36 792 4.45e-125 401
Msa1448730 AT3G07520.1 30.390 872 519 24 9 856 12 819 3.14e-101 336
Msa1448730 AT5G48400.2 26.978 834 531 18 38 856 40 810 5.18e-93 314
Msa1448730 AT5G48410.1 27.421 857 541 22 38 883 42 828 1.10e-90 307
Msa1448730 AT5G48400.1 26.614 759 481 17 38 781 40 737 3.06e-81 279
Msa1448730 AT3G04110.1 26.722 842 503 22 38 851 30 785 3.71e-81 280
Msa1448730 AT5G48410.2 27.285 755 476 19 38 781 42 734 1.74e-80 277
Msa1448730 AT5G48410.4 26.254 857 524 22 38 883 42 801 1.54e-77 270
Msa1448730 AT5G48410.3 26.138 857 521 22 38 883 42 797 7.00e-75 263
Msa1448730 AT3G04110.3 26.544 761 456 20 38 781 30 704 6.00e-72 253
Msa1448730 AT3G04110.2 25.416 842 486 22 38 851 30 757 8.54e-69 245
Msa1448730 AT5G11210.11 37.346 324 199 4 532 852 15 337 4.25e-66 228

Find 218 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAACAGAACAAGGATTT+TGG 0.111436 tig0032299:-9029 Msa1448730:CDS
TTTGAGCAGTGAATGGTTTA+AGG 0.173210 tig0032299:+8927 Msa1448730:intergenic
ACAAATTGCAGTGGATTTAT+TGG 0.178126 tig0032299:-11088 Msa1448730:CDS
GCTAAATAGTGTGAACTTAA+TGG 0.185005 tig0032299:-10204 Msa1448730:CDS
AGACCAACTGTTGTGAAAAT+TGG 0.195940 tig0032299:-11238 Msa1448730:CDS
AACTCTCTCTTAAAAGCTTC+TGG 0.200609 tig0032299:-7794 Msa1448730:CDS
CTCAAAGGCTTTCCATTGTT+TGG 0.206550 tig0032299:+9462 Msa1448730:intergenic
AATGAAGTTGTGGCTATAAT+TGG 0.217187 tig0032299:-11280 Msa1448730:CDS
TATTCTTCCTGGTATTAAAA+TGG 0.225028 tig0032299:-11128 Msa1448730:CDS
ATGTACCTCTTCTTTCATTT+GGG 0.227977 tig0032299:-10484 Msa1448730:CDS
CATGTACCTCTTCTTTCATT+TGG 0.229059 tig0032299:-10485 Msa1448730:CDS
TCCAAAATCCTTGTTCTGTT+TGG 0.230043 tig0032299:+9028 Msa1448730:intergenic
TGAGTTCTGGTGTTGGTTTA+AGG 0.236614 tig0032299:-11400 Msa1448730:five_prime_UTR
TATTTAGATTCCATCCTTCT+TGG 0.245159 tig0032299:-7378 Msa1448730:three_prime_UTR
CTACCTCGAGTTTGTTTCTA+AGG 0.255135 tig0032299:-9415 Msa1448730:CDS
CCAAAATCCTTGTTCTGTTT+GGG 0.258528 tig0032299:+9029 Msa1448730:intergenic
ACTCAACCTTTCATGGAATC+AGG 0.270280 tig0032299:-9001 Msa1448730:CDS
ATTCTTCAACTCTCAGAAAA+TGG 0.277745 tig0032299:-7894 Msa1448730:CDS
TTGGAATACCTTACCTTGAT+TGG 0.295410 tig0032299:-11675 Msa1448730:five_prime_UTR
ACATCGGTGAATCTGGTTTC+CGG 0.298014 tig0032299:-9638 Msa1448730:CDS
AACTTGCATCATGTATAAAT+AGG 0.301524 tig0032299:+11858 Msa1448730:intergenic
AGTCATCATTCCAAGATTCT+TGG 0.302144 tig0032299:+10121 Msa1448730:intergenic
GGGATAAGGCAACAAGTTTA+TGG 0.302251 tig0032299:+9341 Msa1448730:intergenic
GATTGTCATAATTTGCTTCC+TGG 0.305338 tig0032299:+8814 Msa1448730:intergenic
GTTTCCGGAGAGTCGGTTAT+TGG 0.309022 tig0032299:-9623 Msa1448730:CDS
AGCAAATTATGACAATCTTT+TGG 0.314822 tig0032299:-8808 Msa1448730:intron
CAAAGACTTGATTGTATTTG+TGG 0.316787 tig0032299:-7607 Msa1448730:CDS
AAGAATCCACCAGGAGTTAA+AGG 0.316821 tig0032299:-9390 Msa1448730:CDS
CTACAGCCAGCTTGTTAATC+AGG 0.316988 tig0032299:-9271 Msa1448730:CDS
ATCCTTAACATCGGTGAATC+TGG 0.317171 tig0032299:-9645 Msa1448730:CDS
ATTATAGCCACAACTTCATT+TGG 0.318223 tig0032299:+11283 Msa1448730:intergenic
GGATTTCACTCAACCTTTCA+TGG 0.322099 tig0032299:-9008 Msa1448730:CDS
TCAAAGGCTTTCCATTGTTT+GGG 0.322840 tig0032299:+9463 Msa1448730:intergenic
TTTACTATTGCCAAGAATCT+TGG 0.334414 tig0032299:-10131 Msa1448730:CDS
GAAAACACTGTGAGTGGTCT+TGG 0.336437 tig0032299:-8542 Msa1448730:CDS
CCGCGACAATATATATTATT+CGG 0.337276 tig0032299:-9315 Msa1448730:CDS
TCCTTCAAAGTTGGATTCAA+TGG 0.338078 tig0032299:-10066 Msa1448730:CDS
ACTTGACAGGTGTTGAGTTC+TGG 0.342444 tig0032299:-11413 Msa1448730:intron
TGCGTGGTTCGGACAAAATA+TGG 0.351432 tig0032299:+10428 Msa1448730:intergenic
TGATGTAGCTTTGCAGTTGA+TGG 0.355073 tig0032299:-10585 Msa1448730:intron
AATATATATTGTCGCGGAAC+GGG 0.362665 tig0032299:+9321 Msa1448730:intergenic
TTCAAGGTGTTGTAGCTTTG+AGG 0.370685 tig0032299:-10013 Msa1448730:CDS
TATTGTCGCGGAACGGGATA+AGG 0.373051 tig0032299:+9327 Msa1448730:intergenic
ATGGAGGTGTTAGGAGTAAA+GGG 0.377419 tig0032299:-11337 Msa1448730:CDS
TTCAATGTGTTAGTATCAAC+TGG 0.379645 tig0032299:+10041 Msa1448730:intergenic
TGGGGTCTCTTTCTTATATG+TGG 0.379860 tig0032299:-7774 Msa1448730:CDS
GCTAATAAGACTATTCTTCC+TGG 0.382556 tig0032299:-11139 Msa1448730:CDS
GACATAAAGAGTTCAATATA+AGG 0.383153 tig0032299:+8218 Msa1448730:intergenic
TTTACTGTTGATTCTGTGAT+TGG 0.383641 tig0032299:-11208 Msa1448730:CDS
CTCCATTCGGTCCACGCGTA+AGG 0.385447 tig0032299:+8270 Msa1448730:intergenic
TGGTTGCTTATTGAAGTGTT+AGG 0.387184 tig0032299:+9546 Msa1448730:intergenic
AGACAATTTGATTCTTGAAA+AGG 0.387607 tig0032299:-11981 Msa1448730:five_prime_UTR
GGAGATTTGTGCTAATCATA+TGG 0.392311 tig0032299:-8520 Msa1448730:CDS
ATACTACAGCACCAACAAAA+AGG 0.393770 tig0032299:+8879 Msa1448730:intergenic
ATGGAAACTGCAGAGAAGAT+AGG 0.402701 tig0032299:+10447 Msa1448730:intergenic
CTCAATGAAACTATCCTAGA+TGG 0.403452 tig0032299:+8317 Msa1448730:intergenic
ATGATGCAAGTTTAGCTTTG+AGG 0.404656 tig0032299:-11847 Msa1448730:five_prime_UTR
TATATTGAACTCTTTATGTC+TGG 0.404663 tig0032299:-8215 Msa1448730:CDS
TATATGCATATGATTCTGTT+TGG 0.404993 tig0032299:-9896 Msa1448730:CDS
AACCAGATTCACCGATGTTA+AGG 0.407729 tig0032299:+9643 Msa1448730:intergenic
GCTCAAATGTGGTGTGTTAC+CGG 0.411160 tig0032299:-8911 Msa1448730:CDS
GAGAAATAAAGGAGATACTT+AGG 0.417888 tig0032299:-7572 Msa1448730:CDS
GGTCTCTTGTACAAAACTTC+AGG 0.418242 tig0032299:+9570 Msa1448730:intergenic
TGTGTTCACTAAAAGTGGTT+GGG 0.422992 tig0032299:-8162 Msa1448730:CDS
TCAACTTCCATCTCACTCCC+TGG 0.423289 tig0032299:+7684 Msa1448730:intergenic
AATAGTCGCTGTGCGTGGTT+CGG 0.425644 tig0032299:+10417 Msa1448730:intergenic
ATATCAGGTAATCAACCAAT+TGG 0.427826 tig0032299:-8395 Msa1448730:CDS
ATTGTCATAATTTGCTTCCT+GGG 0.434062 tig0032299:+8815 Msa1448730:intergenic
GGAATTGACAGCTTGATATC+AGG 0.434188 tig0032299:-8410 Msa1448730:CDS
GGATTTATTGGAACAGTTGA+AGG 0.435584 tig0032299:-11076 Msa1448730:intron
CACCACATTTGAGCAGTGAA+TGG 0.435645 tig0032299:+8920 Msa1448730:intergenic
AGATTGGCTTCCTTCAAAGT+TGG 0.435793 tig0032299:-10075 Msa1448730:CDS
ACTCTCTCTTAAAAGCTTCT+GGG 0.443262 tig0032299:-7793 Msa1448730:CDS
CTTGATTTGATCTCCTTGAC+AGG 0.444431 tig0032299:+8962 Msa1448730:intergenic
CAGAACTTTGATGCAGCTGT+TGG 0.449103 tig0032299:-9067 Msa1448730:CDS
AATGAAGTGATTGCCACAAT+TGG 0.450571 tig0032299:-10560 Msa1448730:CDS
TAGCAAGGGGAGAGTCCCTC+TGG 0.451698 tig0032299:+7934 Msa1448730:intergenic
TGCAAAAGATCCACGACAAA+TGG 0.451961 tig0032299:-7866 Msa1448730:CDS
AATGGAGGTGTTAGGAGTAA+AGG 0.453081 tig0032299:-11338 Msa1448730:CDS
ATATATATTGTTATTTACTT+AGG 0.455659 tig0032299:+7488 Msa1448730:intergenic
GTTCATGTTAATCCCGATCA+TGG 0.457387 tig0032299:-10164 Msa1448730:CDS
TCCATTGAATCCAACTTTGA+AGG 0.458795 tig0032299:+10065 Msa1448730:intergenic
GACCCGTCTTGAATTCCAAT+TGG 0.460990 tig0032299:+8380 Msa1448730:intergenic
AGATTCCATCCTTCTTGGCT+AGG 0.464490 tig0032299:-7373 Msa1448730:three_prime_UTR
CAGCTATCCTCACAAATTGA+AGG 0.465339 tig0032299:-8431 Msa1448730:CDS
CTGAAACAGTATTAATAAGT+AGG 0.469008 tig0032299:+11712 Msa1448730:intergenic
AACACATTGAAACTCCTTCA+AGG 0.469576 tig0032299:-10029 Msa1448730:CDS
GACGATGATTATGGAAGAAA+CGG 0.471966 tig0032299:-10326 Msa1448730:CDS
TACAAAGCCGCATTATCTCC+TGG 0.474815 tig0032299:-10254 Msa1448730:CDS
CAAGATACTGATATCATCCT+TGG 0.475113 tig0032299:+10226 Msa1448730:intergenic
AGGGCGTCCTCATATACCTT+TGG 0.477099 tig0032299:+8290 Msa1448730:intergenic
ATATCATCCTTGGTGGCTCC+AGG 0.478602 tig0032299:+10236 Msa1448730:intergenic
AAAATATTCAAACCATGATC+GGG 0.480624 tig0032299:+10152 Msa1448730:intergenic
AAAACACTGTGAGTGGTCTT+GGG 0.485893 tig0032299:-8541 Msa1448730:CDS
CTTGATGCTTTACTCAAAGA+AGG 0.487442 tig0032299:-9858 Msa1448730:CDS
TCAAAGCTACAACACCTTGA+AGG 0.494588 tig0032299:+10015 Msa1448730:intergenic
CAGGTGTTGAGTTCTGGTGT+TGG 0.498356 tig0032299:-11407 Msa1448730:five_prime_UTR
CTCAACCTTTCATGGAATCA+GGG 0.499064 tig0032299:-9000 Msa1448730:CDS
ACCTTTCATGGAATCAGGGC+TGG 0.503020 tig0032299:-8996 Msa1448730:CDS
TTAGGCAGAAGAGTAAGAAA+AGG 0.503056 tig0032299:-7554 Msa1448730:CDS
AGGAGATCAAATCAAGCCCT+TGG 0.503218 tig0032299:-8955 Msa1448730:CDS
CAACTTCCATCTCACTCCCT+GGG 0.506695 tig0032299:+7685 Msa1448730:intergenic
TTTGGGAAAACCCATCCTCT+TGG 0.509537 tig0032299:+9480 Msa1448730:intergenic
ACGCGTGGACCGAATGGAGG+AGG 0.509621 tig0032299:-8266 Msa1448730:CDS
TTAACAAGCTGGCTGTAGTC+GGG 0.509830 tig0032299:+9276 Msa1448730:intergenic
TGTACCTCTTCTTTCATTTG+GGG 0.512564 tig0032299:-10483 Msa1448730:CDS
TCTTGAGCACAGGCACAATC+CGG 0.513255 tig0032299:-8852 Msa1448730:CDS
TAGACCAATAACCGACTCTC+CGG 0.515792 tig0032299:+9619 Msa1448730:intergenic
ATGTGTGGATTGCAACAGAT+TGG 0.517566 tig0032299:-10091 Msa1448730:CDS
AACTCAATATACAACCATCT+AGG 0.518450 tig0032299:-8331 Msa1448730:CDS
GTCTTGAAAGCCATTTGTCG+TGG 0.519858 tig0032299:+7856 Msa1448730:intergenic
GTGTTCACTAAAAGTGGTTG+GGG 0.519933 tig0032299:-8161 Msa1448730:CDS
GGTAGTTGTTGTTCCTGTCA+AGG 0.521207 tig0032299:-8975 Msa1448730:CDS
GGTGTAGCTATAGTTTCTCC+AGG 0.521581 tig0032299:+9501 Msa1448730:intergenic
TGGAAACTGCAGAGAAGATA+GGG 0.522263 tig0032299:+10448 Msa1448730:intergenic
ATTAACAAGCTGGCTGTAGT+CGG 0.522679 tig0032299:+9275 Msa1448730:intergenic
GTCATAATTTGCTTCCTGGG+TGG 0.524462 tig0032299:+8818 Msa1448730:intergenic
GCTACAACCCCTCCTCCATT+CGG 0.524506 tig0032299:+8257 Msa1448730:intergenic
GTCAATTCCTTCAATTTGTG+AGG 0.524687 tig0032299:+8424 Msa1448730:intergenic
TCCATTCGGTCCACGCGTAA+GGG 0.524711 tig0032299:+8271 Msa1448730:intergenic
ATGCAATAGCCTTTAACTCC+TGG 0.525831 tig0032299:+9381 Msa1448730:intergenic
TAATATATATTGTCGCGGAA+CGG 0.526877 tig0032299:+9320 Msa1448730:intergenic
GTGCAACCTGATTAACAAGC+TGG 0.527712 tig0032299:+9265 Msa1448730:intergenic
GAGAGATCCAAAGGTATATG+AGG 0.527797 tig0032299:-8297 Msa1448730:CDS
GGAAATGTGTTCACTAAAAG+TGG 0.528776 tig0032299:-8167 Msa1448730:CDS
GCCCTTACGCGTGGACCGAA+TGG 0.528919 tig0032299:-8272 Msa1448730:CDS
CCTAAGCTGATTGACACAAA+AGG 0.532905 tig0032299:-9810 Msa1448730:CDS
CAAACTGATCATCTAAGCTC+TGG 0.532998 tig0032299:+7523 Msa1448730:intergenic
TAGCTGCTGCACTGTGAGGA+TGG 0.533117 tig0032299:+8448 Msa1448730:intergenic
AACTGCAAGTTCAGAACCGT+TGG 0.537171 tig0032299:-8188 Msa1448730:CDS
AAGACGGGTCATTTGCAAGA+AGG 0.537649 tig0032299:-8367 Msa1448730:CDS
GAATCTGGTTTCCGGAGAGT+CGG 0.539476 tig0032299:-9630 Msa1448730:CDS
TATATAAACCAATCAAGGTA+AGG 0.539950 tig0032299:+11667 Msa1448730:intergenic
CAATAATTTCCTAGCCAAGA+AGG 0.540497 tig0032299:+7364 Msa1448730:intergenic
TACAAATTTAATATGCATGT+GGG 0.540698 tig0032299:-11754 Msa1448730:five_prime_UTR
AGCTATATATAAACCAATCA+AGG 0.541022 tig0032299:+11662 Msa1448730:intergenic
CAATTGTCCCAAACAGAACA+AGG 0.541430 tig0032299:-9036 Msa1448730:CDS
GGAGATCAAATCAAGCCCTT+GGG 0.544302 tig0032299:-8954 Msa1448730:CDS
ATATTGTTATTTACTTAGGT+AGG 0.545707 tig0032299:+7492 Msa1448730:intergenic
TCTAGGTTGAAGAACGCAAA+CGG 0.545787 tig0032299:-9951 Msa1448730:CDS
CTGGGTGGACCTCGGAACTC+CGG 0.547905 tig0032299:+8833 Msa1448730:intergenic
GAGTGAGATGGAAGTTGACC+AGG 0.550105 tig0032299:-7679 Msa1448730:CDS
AGGAGCTAAAACTGATAGAC+CGG 0.551583 tig0032299:+9590 Msa1448730:intergenic
CTATAGCTACACCAAGAGGA+TGG 0.554528 tig0032299:-9491 Msa1448730:CDS
AAAAGTGTAGGGAGAAAGTC+CGG 0.554930 tig0032299:+9744 Msa1448730:intergenic
ACAATTGGTCCACAATCCTC+AGG 0.555615 tig0032299:-10545 Msa1448730:CDS
AAGTTCATTCTCAAAAGTGT+AGG 0.556972 tig0032299:+9732 Msa1448730:intergenic
TAAAGTCTTGATCATGCTCA+TGG 0.558196 tig0032299:-11598 Msa1448730:five_prime_UTR
TTGTTATTTACTTAGGTAGG+TGG 0.558818 tig0032299:+7495 Msa1448730:intergenic
AACGGTTCTGAACTTGCAGT+TGG 0.559033 tig0032299:+8190 Msa1448730:intergenic
TAGTATGGATTCTTGAGCAC+AGG 0.559377 tig0032299:-8862 Msa1448730:CDS
CAACCAATTGGAATTCAAGA+CGG 0.561704 tig0032299:-8383 Msa1448730:CDS
AACCAATTGGAATTCAAGAC+GGG 0.564447 tig0032299:-8382 Msa1448730:CDS
CAATATATATTATTCGGAGA+TGG 0.566628 tig0032299:-9309 Msa1448730:CDS
ATGTGTTCACTAAAAGTGGT+TGG 0.569973 tig0032299:-8163 Msa1448730:CDS
CAATAGCCTTTAACTCCTGG+TGG 0.570495 tig0032299:+9384 Msa1448730:intergenic
ACCAGCCCTGATTCCATGAA+AGG 0.571061 tig0032299:+8995 Msa1448730:intergenic
CGGAGTTCCGAGGTCCACCC+AGG 0.572905 tig0032299:-8832 Msa1448730:CDS
TGAGCTATTCCTGAGGATTG+TGG 0.573695 tig0032299:+10536 Msa1448730:intergenic
TTTGCTTCCTGGGTGGACCT+CGG 0.574116 tig0032299:+8825 Msa1448730:intergenic
ATGTTAAGGATATCATATGA+TGG 0.574140 tig0032299:+9657 Msa1448730:intergenic
TTTCATGATACAAATTGCAG+TGG 0.576132 tig0032299:-11097 Msa1448730:CDS
CGCGTGGACCGAATGGAGGA+GGG 0.576233 tig0032299:-8265 Msa1448730:CDS
TGAGGCACTGCTATTCTCAA+AGG 0.576248 tig0032299:+9447 Msa1448730:intergenic
ATGAACTTCACTGGTTTGAG+TGG 0.577802 tig0032299:-9717 Msa1448730:CDS
GTGGATTCCAAATGAAGTTG+TGG 0.579560 tig0032299:-11290 Msa1448730:CDS
TTACAAATTTAATATGCATG+TGG 0.581326 tig0032299:-11755 Msa1448730:five_prime_UTR
AGAAACGGAATTTCAATACT+CGG 0.581527 tig0032299:-10311 Msa1448730:CDS
CAATACATGAAATTCATCCC+AGG 0.584069 tig0032299:-7702 Msa1448730:CDS
TGAGGATTGTGGACCAATTG+TGG 0.585224 tig0032299:+10547 Msa1448730:intergenic
CTCTCTCTTAAAAGCTTCTG+GGG 0.586457 tig0032299:-7792 Msa1448730:CDS
AGTTCATTCTCAAAAGTGTA+GGG 0.586570 tig0032299:+9733 Msa1448730:intergenic
CAGTTGACATATCAATAGCA+AGG 0.587284 tig0032299:+7919 Msa1448730:intergenic
AATTTCCTAGCCAAGAAGGA+TGG 0.587720 tig0032299:+7368 Msa1448730:intergenic
AGTTTCATTGAGAGATCCAA+AGG 0.593132 tig0032299:-8306 Msa1448730:CDS
GGTTATTGGTCTAATTACTC+CGG 0.594786 tig0032299:-9609 Msa1448730:CDS
GTTGAAGAACGCAAACGGCA+CGG 0.597011 tig0032299:-9946 Msa1448730:CDS
ATTCATCCCAGGGAGTGAGA+TGG 0.599534 tig0032299:-7691 Msa1448730:CDS
GATACTGATATCATCCTTGG+TGG 0.600845 tig0032299:+10229 Msa1448730:intergenic
TTTAGTGAACACATTTCCAA+CGG 0.601875 tig0032299:+8172 Msa1448730:intergenic
AACCATTCACTGCTCAAATG+TGG 0.604971 tig0032299:-8922 Msa1448730:CDS
TTGCTTATTGAAGTGTTAGG+TGG 0.609190 tig0032299:+9549 Msa1448730:intergenic
TATAGCTACACCAAGAGGAT+GGG 0.610856 tig0032299:-9490 Msa1448730:CDS
ACTGCAGAGAAGATAGGGTA+GGG 0.615071 tig0032299:+10453 Msa1448730:intergenic
GATGCTTTACTCAAAGAAGG+TGG 0.616128 tig0032299:-9855 Msa1448730:CDS
AGTTGACATATCAATAGCAA+GGG 0.617744 tig0032299:+7920 Msa1448730:intergenic
CAAATGAAAGAAGAGGTACA+TGG 0.620174 tig0032299:+10486 Msa1448730:intergenic
ACAGTATTAATAAGTAGGTG+TGG 0.621841 tig0032299:+11717 Msa1448730:intergenic
CTGAAAATAGTCGCTGTGCG+TGG 0.622773 tig0032299:+10412 Msa1448730:intergenic
AATACATGAAATTCATCCCA+GGG 0.622960 tig0032299:-7701 Msa1448730:CDS
CTTACGCGTGGACCGAATGG+AGG 0.623808 tig0032299:-8269 Msa1448730:CDS
GTTGCCCCAAATGAAAGAAG+AGG 0.623927 tig0032299:+10479 Msa1448730:intergenic
CCGAATAATATATATTGTCG+CGG 0.627209 tig0032299:+9315 Msa1448730:intergenic
ATTATCTCCTGGAGCCACCA+AGG 0.633029 tig0032299:-10243 Msa1448730:CDS
AACTGCAGAGAAGATAGGGT+AGG 0.635877 tig0032299:+10452 Msa1448730:intergenic
AATCTTGGAATGATGACTAG+TGG 0.639163 tig0032299:-10116 Msa1448730:CDS
ACAGGAGAAAACACTGTGAG+TGG 0.640886 tig0032299:-8548 Msa1448730:intron
GAAACTATAGCTACACCAAG+AGG 0.641101 tig0032299:-9495 Msa1448730:CDS
AATGGTTTAAGGAAAGCCCA+AGG 0.642280 tig0032299:+8938 Msa1448730:intergenic
TCATATGATATCCTTAACAT+CGG 0.644656 tig0032299:-9654 Msa1448730:CDS
ATGATCACAGGGATTCCAGA+GGG 0.649288 tig0032299:-7949 Msa1448730:intron
AGGCACAATCCGGAGTTCCG+AGG 0.650646 tig0032299:-8842 Msa1448730:CDS
TCTAAGGACAAGAATCCACC+AGG 0.651159 tig0032299:-9399 Msa1448730:CDS
ACCAGGAAAATCCGTCACCT+AGG 0.653912 tig0032299:-7662 Msa1448730:CDS
TGATGACTAGTGGTTATGTG+TGG 0.663189 tig0032299:-10106 Msa1448730:CDS
GCGTGGACCGAATGGAGGAG+GGG 0.668319 tig0032299:-8264 Msa1448730:CDS
AGGATAGCTGCTGCACTGTG+AGG 0.668868 tig0032299:+8444 Msa1448730:intergenic
ATGGTTTAAGGAAAGCCCAA+GGG 0.670983 tig0032299:+8939 Msa1448730:intergenic
TGTCCTTAGAAACAAACTCG+AGG 0.671921 tig0032299:+9412 Msa1448730:intergenic
TATGAGGACGCCCTTACGCG+TGG 0.674186 tig0032299:-8281 Msa1448730:CDS
ATTGGAAGATCAGCTCAACA+AGG 0.681994 tig0032299:-11190 Msa1448730:CDS
GATGATATGAGCTATTCCTG+AGG 0.688313 tig0032299:+10529 Msa1448730:intergenic
GTTGACATATCAATAGCAAG+GGG 0.698402 tig0032299:+7921 Msa1448730:intergenic
GGTGGCTCCAGGAGATAATG+CGG 0.718412 tig0032299:+10247 Msa1448730:intergenic
TCGAGGTAGCTTATTCTGTG+AGG 0.720996 tig0032299:+9429 Msa1448730:intergenic
GATGCGCTAGCAAAGAAACG+CGG 0.721197 tig0032299:-10287 Msa1448730:CDS
CATGATCACAGGGATTCCAG+AGG 0.735472 tig0032299:-7950 Msa1448730:intron
TGGCTTTCAAGACAGAACTG+TGG 0.756266 tig0032299:-7846 Msa1448730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATTGTTATTTACTT+AGG + tig0032299:11734-11753 Msa1448730:intergenic 10.0%
!!! TTCTTTTATTTTTGATATTT+TGG - tig0032299:11772-11791 Msa1448730:five_prime_UTR 10.0%
!!! AATTCTTAATGTTCAATTTT+AGG - tig0032299:8183-8202 Msa1448730:CDS 15.0%
!!! TTCAATTTTAGGTTTAATTT+TGG - tig0032299:8194-8213 Msa1448730:CDS 15.0%
!!! TCAATTTTAGGTTTAATTTT+GGG - tig0032299:8195-8214 Msa1448730:CDS 15.0%
!! TATCAAAAATAAAAGAAACA+AGG + tig0032299:11769-11788 Msa1448730:intergenic 15.0%
!! TTACAAATTTAATATGCATG+TGG - tig0032299:7464-7483 Msa1448730:three_prime_UTR 20.0%
!! TACAAATTTAATATGCATGT+GGG - tig0032299:7465-7484 Msa1448730:three_prime_UTR 20.0%
!! TTCTTATTCTATGATATGTT+TGG - tig0032299:7696-7715 Msa1448730:CDS 20.0%
!!! CAATTTTAGGTTTAATTTTG+GGG - tig0032299:8196-8215 Msa1448730:CDS 20.0%
!!! TCCTTATTTTTTCATTACTT+AGG - tig0032299:8311-8330 Msa1448730:CDS 20.0%
!!! TATTTTTTGTCTTAAACCTT+CGG - tig0032299:8343-8362 Msa1448730:CDS 20.0%
!! TAAATTATATCCTATATGAG+AGG + tig0032299:8534-8553 Msa1448730:intergenic 20.0%
!! ATATAGGATATAATTTAGAG+AGG - tig0032299:8537-8556 Msa1448730:CDS 20.0%
!!! ACATTGTTGATTTTTATAGA+TGG - tig0032299:8846-8865 Msa1448730:CDS 20.0%
!! AAAAATATTCAAACCATGAT+CGG + tig0032299:9071-9090 Msa1448730:intergenic 20.0%
!!! TCAAAAAAAGTTTTTTCTCT+AGG - tig0032299:9251-9270 Msa1448730:intron 20.0%
!! AGATACAGCATTTAAATATT+GGG + tig0032299:10051-10070 Msa1448730:intergenic 20.0%
!! TAGATACAGCATTTAAATAT+TGG + tig0032299:10052-10071 Msa1448730:intergenic 20.0%
!!! AGTATTTTTAGCTTAATCAT+TGG - tig0032299:10436-10455 Msa1448730:CDS 20.0%
!!! GTATAAATTTCTGATTTTCT+TGG - tig0032299:10633-10652 Msa1448730:intron 20.0%
!! TTATGTAACTCTTATGTAAA+GGG - tig0032299:11134-11153 Msa1448730:CDS 20.0%
!!! ATATTGTTATTTACTTAGGT+AGG + tig0032299:11730-11749 Msa1448730:intergenic 20.0%
! AACTTGCATCATGTATAAAT+AGG + tig0032299:7364-7383 Msa1395010:intergenic 25.0%
! CTGAAACAGTATTAATAAGT+AGG + tig0032299:7510-7529 Msa1448730:intergenic 25.0%
! TATATAAACCAATCAAGGTA+AGG + tig0032299:7555-7574 Msa1448730:intergenic 25.0%
! AGCTATATATAAACCAATCA+AGG + tig0032299:7560-7579 Msa1448730:intergenic 25.0%
!!! TGGCTTATTTTTTTATATCC+AGG - tig0032299:7641-7660 Msa1448730:CDS 25.0%
!!! TTTTTTATATCCAGGTATGT+CGG - tig0032299:7649-7668 Msa1448730:CDS 25.0%
!! AATTTTTGCTGATGTTGAAA+AGG - tig0032299:7779-7798 Msa1448730:CDS 25.0%
! TATTCTTCCTGGTATTAAAA+TGG - tig0032299:8091-8110 Msa1448730:intron 25.0%
!!! ATAACATCCATTTTAATACC+AGG + tig0032299:8101-8120 Msa1448730:intergenic 25.0%
! GCCTAAGTAATGAAAAAATA+AGG + tig0032299:8315-8334 Msa1448730:intergenic 25.0%
! ACCATTAATTGTTTCAGTTA+GGG - tig0032299:8415-8434 Msa1448730:CDS 25.0%
!!! TACTAGTCTTAAACTAGAAA+TGG + tig0032299:8498-8517 Msa1448730:intergenic 25.0%
! ATATAATCTTCCTCTCATAT+AGG - tig0032299:8521-8540 Msa1448730:CDS 25.0%
! ATTTAGAGAGGAATTTCTTA+TGG - tig0032299:8549-8568 Msa1448730:intron 25.0%
!!! TTGTTGATTTTTATAGATGG+AGG - tig0032299:8849-8868 Msa1448730:CDS 25.0%
! ATAATCATCGTCTACAAAAA+TGG + tig0032299:8885-8904 Msa1448730:intergenic 25.0%
!! ATTTTTGTAGACGATGATTA+TGG - tig0032299:8884-8903 Msa1448730:CDS 25.0%
! AAAATATTCAAACCATGATC+GGG + tig0032299:9070-9089 Msa1448730:intergenic 25.0%
!!! CTTTTTTTGAGATTTGTATC+AGG + tig0032299:9241-9260 Msa1448730:intergenic 25.0%
! TATATGCATATGATTCTGTT+TGG - tig0032299:9323-9342 Msa1448730:CDS 25.0%
! ATGTTAAGGATATCATATGA+TGG + tig0032299:9565-9584 Msa1448730:intergenic 25.0%
! TCATATGATATCCTTAACAT+CGG - tig0032299:9565-9584 Msa1448730:CDS 25.0%
!! ACAAAACATTGAACAGTTTT+TGG + tig0032299:9696-9715 Msa1448730:intergenic 25.0%
!! AAAAACTGTTCAATGTTTTG+TGG - tig0032299:9695-9714 Msa1448730:CDS 25.0%
! CAATATATATTATTCGGAGA+TGG - tig0032299:9910-9929 Msa1448730:CDS 25.0%
! TTAGTGATTCAATGATCATA+TGG - tig0032299:10013-10032 Msa1448730:CDS 25.0%
!! AGCAAATTATGACAATCTTT+TGG - tig0032299:10411-10430 Msa1448730:CDS 25.0%
! GACATAAAGAGTTCAATATA+AGG + tig0032299:11004-11023 Msa1448730:intergenic 25.0%
! TATATTGAACTCTTTATGTC+TGG - tig0032299:11004-11023 Msa1448730:intron 25.0%
! ACATAAGAGTTACATAAGAA+GGG + tig0032299:11131-11150 Msa1448730:intergenic 25.0%
! TACATAAGAGTTACATAAGA+AGG + tig0032299:11132-11151 Msa1448730:intergenic 25.0%
! CTTATGTAACTCTTATGTAA+AGG - tig0032299:11133-11152 Msa1448730:CDS 25.0%
!! GAAGATAGAAATGTTTTTCT+TGG + tig0032299:11583-11602 Msa1448730:intergenic 25.0%
! TTATACACAGTGTAGAAAAA+AGG - tig0032299:11892-11911 Msa1448730:five_prime_UTR 25.0%
!!! GATACTCTTACTTGTTTTAG+AGG - tig0032299:7403-7422 Msa1448730:three_prime_UTR 30.0%
ACAGTATTAATAAGTAGGTG+TGG + tig0032299:7505-7524 Msa1448730:intergenic 30.0%
CAGCAAAAATTCACAAACAA+AGG + tig0032299:7770-7789 Msa1448730:intergenic 30.0%
TAAGGTAGAACAAAAATTGC+AGG - tig0032299:7837-7856 Msa1448730:CDS 30.0%
!! TCAGAGGTTTTTCTGAAAAA+TGG - tig0032299:7863-7882 Msa1448730:CDS 30.0%
ATTATAGCCACAACTTCATT+TGG + tig0032299:7939-7958 Msa1448730:intergenic 30.0%
AATGAAGTTGTGGCTATAAT+TGG - tig0032299:7939-7958 Msa1448730:CDS 30.0%
!! TTTACTGTTGATTCTGTGAT+TGG - tig0032299:8011-8030 Msa1448730:intron 30.0%
TTTCATGATACAAATTGCAG+TGG - tig0032299:8122-8141 Msa1448730:intron 30.0%
! ACAAATTGCAGTGGATTTAT+TGG - tig0032299:8131-8150 Msa1448730:intron 30.0%
!!! TTTTAGGTTTAATTTTGGGG+AGG - tig0032299:8199-8218 Msa1448730:CDS 30.0%
TTTCATTACTTAGGCATTTC+TGG - tig0032299:8320-8339 Msa1448730:CDS 30.0%
GACCATTAATTGTTTCAGTT+AGG - tig0032299:8414-8433 Msa1448730:CDS 30.0%
! TGGTTAATGAGTTCTAGTTA+AGG + tig0032299:8471-8490 Msa1448730:intergenic 30.0%
AGTCTTAAACTAGAAATGGA+TGG + tig0032299:8494-8513 Msa1448730:intergenic 30.0%
ATGTACCTCTTCTTTCATTT+GGG - tig0032299:8735-8754 Msa1448730:intron 30.0%
AGAAACGGAATTTCAATACT+CGG - tig0032299:8908-8927 Msa1448730:CDS 30.0%
GCTAAATAGTGTGAACTTAA+TGG - tig0032299:9015-9034 Msa1448730:CDS 30.0%
TTTACTATTGCCAAGAATCT+TGG - tig0032299:9088-9107 Msa1448730:intron 30.0%
TTCAATGTGTTAGTATCAAC+TGG + tig0032299:9181-9200 Msa1448730:intergenic 30.0%
! AGTTCATTCTCAAAAGTGTA+GGG + tig0032299:9489-9508 Msa1448730:intergenic 30.0%
! AAGTTCATTCTCAAAAGTGT+AGG + tig0032299:9490-9509 Msa1448730:intergenic 30.0%
TAATATATATTGTCGCGGAA+CGG + tig0032299:9902-9921 Msa1448730:intergenic 30.0%
CCGAATAATATATATTGTCG+CGG + tig0032299:9907-9926 Msa1448730:intergenic 30.0%
CCGCGACAATATATATTATT+CGG - tig0032299:9904-9923 Msa1448730:CDS 30.0%
GATCATTGAATCACTAAATG+AGG + tig0032299:10010-10029 Msa1448730:intergenic 30.0%
!! ATTGTCATAATTTGCTTCCT+GGG + tig0032299:10407-10426 Msa1448730:intergenic 30.0%
! TTTTCTTGGTTGCTATGATT+TGG - tig0032299:10647-10666 Msa1448730:intron 30.0%
ATATCAGGTAATCAACCAAT+TGG - tig0032299:10824-10843 Msa1448730:intron 30.0%
AACTCAATATACAACCATCT+AGG - tig0032299:10888-10907 Msa1448730:intron 30.0%
TTTAGTGAACACATTTCCAA+CGG + tig0032299:11050-11069 Msa1448730:intergenic 30.0%
GGATTTGTAAGTATCTCTAA+TGG - tig0032299:11079-11098 Msa1448730:CDS 30.0%
AACAATCACTATCATAGAAG+AGG + tig0032299:11204-11223 Msa1448730:intergenic 30.0%
AGTTGACATATCAATAGCAA+GGG + tig0032299:11302-11321 Msa1448730:intergenic 30.0%
ATTCTTCAACTCTCAGAAAA+TGG - tig0032299:11325-11344 Msa1448730:CDS 30.0%
AATACATGAAATTCATCCCA+GGG - tig0032299:11518-11537 Msa1448730:intron 30.0%
CAAAGACTTGATTGTATTTG+TGG - tig0032299:11612-11631 Msa1448730:five_prime_UTR 30.0%
TAAGAGAGAGAGAGAAATAA+AGG - tig0032299:11636-11655 Msa1448730:five_prime_UTR 30.0%
GAGAAATAAAGGAGATACTT+AGG - tig0032299:11647-11666 Msa1448730:five_prime_UTR 30.0%
!! TTGTTATTTACTTAGGTAGG+TGG + tig0032299:11727-11746 Msa1448730:intergenic 30.0%
TATTTAGATTCCATCCTTCT+TGG - tig0032299:11841-11860 Msa1448730:five_prime_UTR 30.0%
!! ATGATGCAAGTTTAGCTTTG+AGG - tig0032299:7372-7391 Msa1448730:three_prime_UTR 35.0%
! TTCAGCTTTTGTCTTCACTT+TGG - tig0032299:7525-7544 Msa1448730:CDS 35.0%
TTGGAATACCTTACCTTGAT+TGG - tig0032299:7544-7563 Msa1448730:CDS 35.0%
TAAAGTCTTGATCATGCTCA+TGG - tig0032299:7621-7640 Msa1448730:CDS 35.0%
TTGAAAAGGTTGTACTTGAC+AGG - tig0032299:7793-7812 Msa1448730:CDS 35.0%
CAAAAATTGCAGGATTTCAG+AGG - tig0032299:7847-7866 Msa1448730:CDS 35.0%
!! GAGGTTTTTCTGAAAAATGG+AGG - tig0032299:7866-7885 Msa1448730:CDS 35.0%
!! TTCTGAAAAATGGAGGTGTT+AGG - tig0032299:7873-7892 Msa1448730:CDS 35.0%
!!! TCCTCTTGTTTTTCTGTTTG+TGG - tig0032299:7910-7929 Msa1448730:CDS 35.0%
TCCACAAACAGAAAAACAAG+AGG + tig0032299:7914-7933 Msa1448730:intergenic 35.0%
AGACCAACTGTTGTGAAAAT+TGG - tig0032299:7981-8000 Msa1448730:intron 35.0%
GCTAATAAGACTATTCTTCC+TGG - tig0032299:8080-8099 Msa1448730:intron 35.0%
GGATTTATTGGAACAGTTGA+AGG - tig0032299:8143-8162 Msa1448730:intron 35.0%
TCAGACTTTACTTATCTCTC+AGG + tig0032299:8396-8415 Msa1448730:intergenic 35.0%
GCCCTAACTGAAACAATTAA+TGG + tig0032299:8419-8438 Msa1448730:intergenic 35.0%
CTTAAACTAGAAATGGATGG+TGG + tig0032299:8491-8510 Msa1448730:intergenic 35.0%
AATGAAGTGATTGCCACAAT+TGG - tig0032299:8659-8678 Msa1448730:CDS 35.0%
! CAAATGAAAGAAGAGGTACA+TGG + tig0032299:8736-8755 Msa1448730:intergenic 35.0%
CATGTACCTCTTCTTTCATT+TGG - tig0032299:8734-8753 Msa1448730:intron 35.0%
TGTACCTCTTCTTTCATTTG+GGG - tig0032299:8736-8755 Msa1448730:intron 35.0%
GACGATGATTATGGAAGAAA+CGG - tig0032299:8893-8912 Msa1448730:CDS 35.0%
CAAGATACTGATATCATCCT+TGG + tig0032299:8996-9015 Msa1448730:intergenic 35.0%
AGTCATCATTCCAAGATTCT+TGG + tig0032299:9101-9120 Msa1448730:intergenic 35.0%
AATCTTGGAATGATGACTAG+TGG - tig0032299:9103-9122 Msa1448730:intron 35.0%
TCCTTCAAAGTTGGATTCAA+TGG - tig0032299:9153-9172 Msa1448730:intron 35.0%
TCCATTGAATCCAACTTTGA+AGG + tig0032299:9157-9176 Msa1448730:intergenic 35.0%
AACACATTGAAACTCCTTCA+AGG - tig0032299:9190-9209 Msa1448730:intron 35.0%
CTTGATGCTTTACTCAAAGA+AGG - tig0032299:9361-9380 Msa1448730:CDS 35.0%
! CTTTTGTGTCAATCAGCTTA+GGG + tig0032299:9411-9430 Msa1448730:intergenic 35.0%
!! CTTTTGAGAATGAACTTCAC+TGG - tig0032299:9493-9512 Msa1448730:CDS 35.0%
! GGTTATTGGTCTAATTACTC+CGG - tig0032299:9610-9629 Msa1448730:CDS 35.0%
! TTGCTTATTGAAGTGTTAGG+TGG + tig0032299:9673-9692 Msa1448730:intergenic 35.0%
! TGGTTGCTTATTGAAGTGTT+AGG + tig0032299:9676-9695 Msa1448730:intergenic 35.0%
TCAAAGGCTTTCCATTGTTT+GGG + tig0032299:9759-9778 Msa1448730:intergenic 35.0%
AATATATATTGTCGCGGAAC+GGG + tig0032299:9901-9920 Msa1448730:intergenic 35.0%
AATTGAGTTTCCGATTTCCA+AGG - tig0032299:10073-10092 Msa1448730:CDS 35.0%
ATTGAGTTTCCGATTTCCAA+GGG - tig0032299:10074-10093 Msa1448730:CDS 35.0%
!! CTGCATCAAAGTTCTGAAAA+AGG + tig0032299:10148-10167 Msa1448730:intergenic 35.0%
CCAAAATCCTTGTTCTGTTT+GGG + tig0032299:10193-10212 Msa1448730:intergenic 35.0%
TCCAAAATCCTTGTTCTGTT+TGG + tig0032299:10194-10213 Msa1448730:intergenic 35.0%
TTTGAGCAGTGAATGGTTTA+AGG + tig0032299:10295-10314 Msa1448730:intergenic 35.0%
AGCACCAACAAAAAGGAAAA+AGG + tig0032299:10336-10355 Msa1448730:intergenic 35.0%
ATACTACAGCACCAACAAAA+AGG + tig0032299:10343-10362 Msa1448730:intergenic 35.0%
!!! TTTTTGTTGGTGCTGTAGTA+TGG - tig0032299:10342-10361 Msa1448730:CDS 35.0%
!! GATTGTCATAATTTGCTTCC+TGG + tig0032299:10408-10427 Msa1448730:intergenic 35.0%
!! AGATTTGTTCCTTCTTTTGC+AGG - tig0032299:10529-10548 Msa1448730:CDS 35.0%
GAAAGTAAACCTGCAAAAGA+AGG + tig0032299:10541-10560 Msa1448730:intergenic 35.0%
GGAGATTTGTGCTAATCATA+TGG - tig0032299:10699-10718 Msa1448730:intron 35.0%
GTCAATTCCTTCAATTTGTG+AGG + tig0032299:10798-10817 Msa1448730:intergenic 35.0%
CAACCAATTGGAATTCAAGA+CGG - tig0032299:10836-10855 Msa1448730:intron 35.0%
AACCAATTGGAATTCAAGAC+GGG - tig0032299:10837-10856 Msa1448730:intron 35.0%
CTCAATGAAACTATCCTAGA+TGG + tig0032299:10905-10924 Msa1448730:intergenic 35.0%
AGTTTCATTGAGAGATCCAA+AGG - tig0032299:10913-10932 Msa1448730:intron 35.0%
GGAAATGTGTTCACTAAAAG+TGG - tig0032299:11052-11071 Msa1448730:intron 35.0%
ATGTGTTCACTAAAAGTGGT+TGG - tig0032299:11056-11075 Msa1448730:intron 35.0%
TGTGTTCACTAAAAGTGGTT+GGG - tig0032299:11057-11076 Msa1448730:intron 35.0%
ATCTCTAATGGCATGCTTTA+CGG - tig0032299:11091-11110 Msa1448730:CDS 35.0%
GAGTTACATAAGAAGGGTTT+AGG + tig0032299:11125-11144 Msa1448730:intergenic 35.0%
ATGTTCAATACCATGATCAC+AGG - tig0032299:11258-11277 Msa1448730:CDS 35.0%
TGTTCAATACCATGATCACA+GGG - tig0032299:11259-11278 Msa1448730:CDS 35.0%
GTTGACATATCAATAGCAAG+GGG + tig0032299:11301-11320 Msa1448730:intergenic 35.0%
CAGTTGACATATCAATAGCA+AGG + tig0032299:11303-11322 Msa1448730:intergenic 35.0%
AACTCTCTCTTAAAAGCTTC+TGG - tig0032299:11425-11444 Msa1448730:intron 35.0%
ACTCTCTCTTAAAAGCTTCT+GGG - tig0032299:11426-11445 Msa1448730:intron 35.0%
CAATACATGAAATTCATCCC+AGG - tig0032299:11517-11536 Msa1448730:intron 35.0%
! AGAAATGTTTTTCTTGGCCT+AGG + tig0032299:11577-11596 Msa1448730:intergenic 35.0%
TTAGGCAGAAGAGTAAGAAA+AGG - tig0032299:11665-11684 Msa1448730:five_prime_UTR 35.0%
CAATAATTTCCTAGCCAAGA+AGG + tig0032299:11858-11877 Msa1448730:intergenic 35.0%
AGAAAAAAGGCAAGCAATCT+TGG - tig0032299:11905-11924 Msa1448730:five_prime_UTR 35.0%
AACTTAGATACCGACATACC+TGG + tig0032299:7662-7681 Msa1448730:intergenic 40.0%
!! TGAGTTCTGGTGTTGGTTTA+AGG - tig0032299:7819-7838 Msa1448730:CDS 40.0%
!! AATGGAGGTGTTAGGAGTAA+AGG - tig0032299:7881-7900 Msa1448730:CDS 40.0%
!! ATGGAGGTGTTAGGAGTAAA+GGG - tig0032299:7882-7901 Msa1448730:CDS 40.0%
GTGGATTCCAAATGAAGTTG+TGG - tig0032299:7929-7948 Msa1448730:CDS 40.0%
! GCTCCAATTTTCACAACAGT+TGG + tig0032299:7987-8006 Msa1448730:intergenic 40.0%
ATTGGAAGATCAGCTCAACA+AGG - tig0032299:8029-8048 Msa1448730:intron 40.0%
TCTTAAACCTTCGGTTCTCA+CGG - tig0032299:8352-8371 Msa1448730:CDS 40.0%
AACACAGAGACTTGCAGATA+GGG + tig0032299:8577-8596 Msa1448730:intergenic 40.0%
AAACACAGAGACTTGCAGAT+AGG + tig0032299:8578-8597 Msa1448730:intergenic 40.0%
! TGATGTAGCTTTGCAGTTGA+TGG - tig0032299:8634-8653 Msa1448730:intron 40.0%
GATGATATGAGCTATTCCTG+AGG + tig0032299:8693-8712 Msa1448730:intergenic 40.0%
TGGAAACTGCAGAGAAGATA+GGG + tig0032299:8774-8793 Msa1448730:intergenic 40.0%
ATGGAAACTGCAGAGAAGAT+AGG + tig0032299:8775-8794 Msa1448730:intergenic 40.0%
GATACTGATATCATCCTTGG+TGG + tig0032299:8993-9012 Msa1448730:intergenic 40.0%
GTTCATGTTAATCCCGATCA+TGG - tig0032299:9055-9074 Msa1448730:CDS 40.0%
TGATGACTAGTGGTTATGTG+TGG - tig0032299:9113-9132 Msa1448730:intron 40.0%
! ATGTGTGGATTGCAACAGAT+TGG - tig0032299:9128-9147 Msa1448730:intron 40.0%
!! AGATTGGCTTCCTTCAAAGT+TGG - tig0032299:9144-9163 Msa1448730:intron 40.0%
TCAAAGCTACAACACCTTGA+AGG + tig0032299:9207-9226 Msa1448730:intergenic 40.0%
!! TTCAAGGTGTTGTAGCTTTG+AGG - tig0032299:9206-9225 Msa1448730:intron 40.0%
! TCTAGGTTGAAGAACGCAAA+CGG - tig0032299:9268-9287 Msa1448730:CDS 40.0%
GATGCTTTACTCAAAGAAGG+TGG - tig0032299:9364-9383 Msa1448730:CDS 40.0%
! CCTTTTGTGTCAATCAGCTT+AGG + tig0032299:9412-9431 Msa1448730:intergenic 40.0%
CCTAAGCTGATTGACACAAA+AGG - tig0032299:9409-9428 Msa1448730:CDS 40.0%
! AAAAGTGTAGGGAGAAAGTC+CGG + tig0032299:9478-9497 Msa1448730:intergenic 40.0%
!! ATGAACTTCACTGGTTTGAG+TGG - tig0032299:9502-9521 Msa1448730:CDS 40.0%
ATCCTTAACATCGGTGAATC+TGG - tig0032299:9574-9593 Msa1448730:CDS 40.0%
AACCAGATTCACCGATGTTA+AGG + tig0032299:9579-9598 Msa1448730:intergenic 40.0%
AGGAGCTAAAACTGATAGAC+CGG + tig0032299:9632-9651 Msa1448730:intergenic 40.0%
GGTCTCTTGTACAAAACTTC+AGG + tig0032299:9652-9671 Msa1448730:intergenic 40.0%
GAAACTATAGCTACACCAAG+AGG - tig0032299:9724-9743 Msa1448730:CDS 40.0%
TATAGCTACACCAAGAGGAT+GGG - tig0032299:9729-9748 Msa1448730:CDS 40.0%
CTCAAAGGCTTTCCATTGTT+TGG + tig0032299:9760-9779 Msa1448730:intergenic 40.0%
!! CTACCTCGAGTTTGTTTCTA+AGG - tig0032299:9804-9823 Msa1448730:CDS 40.0%
TGTCCTTAGAAACAAACTCG+AGG + tig0032299:9810-9829 Msa1448730:intergenic 40.0%
AAGAATCCACCAGGAGTTAA+AGG - tig0032299:9829-9848 Msa1448730:CDS 40.0%
ATGCAATAGCCTTTAACTCC+TGG + tig0032299:9841-9860 Msa1448730:intergenic 40.0%
GGGATAAGGCAACAAGTTTA+TGG + tig0032299:9881-9900 Msa1448730:intergenic 40.0%
ATTAACAAGCTGGCTGTAGT+CGG + tig0032299:9947-9966 Msa1448730:intergenic 40.0%
CTTGAAACTCCCTTGGAAAT+CGG + tig0032299:10086-10105 Msa1448730:intergenic 40.0%
CAATTGTCCCAAACAGAACA+AGG - tig0032299:10183-10202 Msa1448730:CDS 40.0%
! CCCAAACAGAACAAGGATTT+TGG - tig0032299:10190-10209 Msa1448730:CDS 40.0%
GGATTTCACTCAACCTTTCA+TGG - tig0032299:10211-10230 Msa1448730:CDS 40.0%
ACTCAACCTTTCATGGAATC+AGG - tig0032299:10218-10237 Msa1448730:CDS 40.0%
CTCAACCTTTCATGGAATCA+GGG - tig0032299:10219-10238 Msa1448730:CDS 40.0%
! CTTGATTTGATCTCCTTGAC+AGG + tig0032299:10260-10279 Msa1448730:intergenic 40.0%
ATGGTTTAAGGAAAGCCCAA+GGG + tig0032299:10283-10302 Msa1448730:intergenic 40.0%
AATGGTTTAAGGAAAGCCCA+AGG + tig0032299:10284-10303 Msa1448730:intergenic 40.0%
AACCATTCACTGCTCAAATG+TGG - tig0032299:10297-10316 Msa1448730:CDS 40.0%
! AACAAAAAGGAAAAAGGCGC+CGG + tig0032299:10330-10349 Msa1448730:intergenic 40.0%
TAGTATGGATTCTTGAGCAC+AGG - tig0032299:10357-10376 Msa1448730:CDS 40.0%
AAGAATGGCTTGAGAAACTC+TGG + tig0032299:10467-10486 Msa1448730:intergenic 40.0%
AAAACACTGTGAGTGGTCTT+GGG - tig0032299:10678-10697 Msa1448730:intron 40.0%
CAGCTATCCTCACAAATTGA+AGG - tig0032299:10788-10807 Msa1448730:intron 40.0%
GGAATTGACAGCTTGATATC+AGG - tig0032299:10809-10828 Msa1448730:intron 40.0%
! GAGAGATCCAAAGGTATATG+AGG - tig0032299:10922-10941 Msa1448730:intron 40.0%
GTGTTCACTAAAAGTGGTTG+GGG - tig0032299:11058-11077 Msa1448730:intron 40.0%
! ATTTGTCGTGGATCTTTTGC+AGG + tig0032299:11354-11373 Msa1448730:intergenic 40.0%
TGCAAAAGATCCACGACAAA+TGG - tig0032299:11353-11372 Msa1448730:exon 40.0%
CTCTCTCTTAAAAGCTTCTG+GGG - tig0032299:11427-11446 Msa1448730:intron 40.0%
TGGGGTCTCTTTCTTATATG+TGG - tig0032299:11445-11464 Msa1448730:intron 40.0%
CAAACTGATCATCTAAGCTC+TGG + tig0032299:11699-11718 Msa1448730:intergenic 40.0%
AATTTCCTAGCCAAGAAGGA+TGG + tig0032299:11854-11873 Msa1448730:intergenic 40.0%
!! ACTTGACAGGTGTTGAGTTC+TGG - tig0032299:7806-7825 Msa1448730:CDS 45.0%
CTTAAACCTTCGGTTCTCAC+GGG - tig0032299:8353-8372 Msa1448730:CDS 45.0%
TTATTTCCCGTGAGAACCGA+AGG + tig0032299:8362-8381 Msa1448730:intergenic 45.0%
TGAGGATTGTGGACCAATTG+TGG + tig0032299:8675-8694 Msa1448730:intergenic 45.0%
ACAATTGGTCCACAATCCTC+AGG - tig0032299:8674-8693 Msa1448730:intron 45.0%
TGAGCTATTCCTGAGGATTG+TGG + tig0032299:8686-8705 Msa1448730:intergenic 45.0%
GTTGCCCCAAATGAAAGAAG+AGG + tig0032299:8743-8762 Msa1448730:intergenic 45.0%
ACTGCAGAGAAGATAGGGTA+GGG + tig0032299:8769-8788 Msa1448730:intergenic 45.0%
AACTGCAGAGAAGATAGGGT+AGG + tig0032299:8770-8789 Msa1448730:intergenic 45.0%
! TGCGTGGTTCGGACAAAATA+TGG + tig0032299:8794-8813 Msa1448730:intergenic 45.0%
TACAAAGCCGCATTATCTCC+TGG - tig0032299:8965-8984 Msa1448730:CDS 45.0%
! TCTTCGCTTCGCGTTTTCAA+TGG - tig0032299:9448-9467 Msa1448730:CDS 45.0%
! ACATCGGTGAATCTGGTTTC+CGG - tig0032299:9581-9600 Msa1448730:CDS 45.0%
! TAGACCAATAACCGACTCTC+CGG + tig0032299:9603-9622 Msa1448730:intergenic 45.0%
! CTGTTCAATGTTTTGTGGCC+TGG - tig0032299:9700-9719 Msa1448730:CDS 45.0%
GGTGTAGCTATAGTTTCTCC+AGG + tig0032299:9721-9740 Msa1448730:intergenic 45.0%
CTATAGCTACACCAAGAGGA+TGG - tig0032299:9728-9747 Msa1448730:CDS 45.0%
TTTGGGAAAACCCATCCTCT+TGG + tig0032299:9742-9761 Msa1448730:intergenic 45.0%
!! GGATGGGTTTTCCCAAACAA+TGG - tig0032299:9745-9764 Msa1448730:CDS 45.0%
!! TGAGGCACTGCTATTCTCAA+AGG + tig0032299:9775-9794 Msa1448730:intergenic 45.0%
TCGAGGTAGCTTATTCTGTG+AGG + tig0032299:9793-9812 Msa1448730:intergenic 45.0%
TCTAAGGACAAGAATCCACC+AGG - tig0032299:9820-9839 Msa1448730:CDS 45.0%
CAATAGCCTTTAACTCCTGG+TGG + tig0032299:9838-9857 Msa1448730:intergenic 45.0%
TTAACAAGCTGGCTGTAGTC+GGG + tig0032299:9946-9965 Msa1448730:intergenic 45.0%
!! CTACAGCCAGCTTGTTAATC+AGG - tig0032299:9948-9967 Msa1448730:CDS 45.0%
GTGCAACCTGATTAACAAGC+TGG + tig0032299:9957-9976 Msa1448730:intergenic 45.0%
TGATCATATGGCTCAGAACG+AGG - tig0032299:10025-10044 Msa1448730:CDS 45.0%
GAAGACACTTGAAACTCCCT+TGG + tig0032299:10093-10112 Msa1448730:intergenic 45.0%
CAGAACTTTGATGCAGCTGT+TGG - tig0032299:10152-10171 Msa1448730:CDS 45.0%
! GGTAGTTGTTGTTCCTGTCA+AGG - tig0032299:10244-10263 Msa1448730:CDS 45.0%
AGGAGATCAAATCAAGCCCT+TGG - tig0032299:10264-10283 Msa1448730:CDS 45.0%
GGAGATCAAATCAAGCCCTT+GGG - tig0032299:10265-10284 Msa1448730:CDS 45.0%
CACCACATTTGAGCAGTGAA+TGG + tig0032299:10302-10321 Msa1448730:intergenic 45.0%
GCTCAAATGTGGTGTGTTAC+CGG - tig0032299:10308-10327 Msa1448730:CDS 45.0%
! GGCGCCTTTTTCCTTTTTGT+TGG - tig0032299:10329-10348 Msa1448730:CDS 45.0%
!! GTCATAATTTGCTTCCTGGG+TGG + tig0032299:10404-10423 Msa1448730:intergenic 45.0%
CTCAAGCCATTCTTGATGCA+CGG - tig0032299:10473-10492 Msa1448730:CDS 45.0%
! TGGTTGCTATGATTTGGCAC+AGG - tig0032299:10653-10672 Msa1448730:intron 45.0%
ACAGGAGAAAACACTGTGAG+TGG - tig0032299:10671-10690 Msa1448730:intron 45.0%
GAAAACACTGTGAGTGGTCT+TGG - tig0032299:10677-10696 Msa1448730:intron 45.0%
GACCCGTCTTGAATTCCAAT+TGG + tig0032299:10842-10861 Msa1448730:intergenic 45.0%
AAGACGGGTCATTTGCAAGA+AGG - tig0032299:10852-10871 Msa1448730:intron 45.0%
!! AACGGTTCTGAACTTGCAGT+TGG + tig0032299:11032-11051 Msa1448730:intergenic 45.0%
AACTGCAAGTTCAGAACCGT+TGG - tig0032299:11031-11050 Msa1448730:intron 45.0%
ATGATCACAGGGATTCCAGA+GGG - tig0032299:11270-11289 Msa1448730:CDS 45.0%
GTCTTGAAAGCCATTTGTCG+TGG + tig0032299:11366-11385 Msa1448730:intergenic 45.0%
TGGCTTTCAAGACAGAACTG+TGG - tig0032299:11373-11392 Msa1448730:five_prime_UTR 45.0%
! GTTTTTCTTGGCCTAGGTGA+CGG + tig0032299:11571-11590 Msa1448730:intergenic 45.0%
AGATTCCATCCTTCTTGGCT+AGG - tig0032299:11846-11865 Msa1448730:five_prime_UTR 45.0%
!!! ATATATATTTATATTTTGAA+TGG - tig0032299:8252-8271 Msa1448730:CDS 5.0%
!! CAGGTGTTGAGTTCTGGTGT+TGG - tig0032299:7812-7831 Msa1448730:CDS 50.0%
AATAGTCGCTGTGCGTGGTT+CGG + tig0032299:8805-8824 Msa1448730:intergenic 50.0%
CTGAAAATAGTCGCTGTGCG+TGG + tig0032299:8810-8829 Msa1448730:intergenic 50.0%
GATGCGCTAGCAAAGAAACG+CGG - tig0032299:8932-8951 Msa1448730:CDS 50.0%
ATTATCTCCTGGAGCCACCA+AGG - tig0032299:8976-8995 Msa1448730:CDS 50.0%
! ATATCATCCTTGGTGGCTCC+AGG + tig0032299:8986-9005 Msa1448730:intergenic 50.0%
GTTGAAGAACGCAAACGGCA+CGG - tig0032299:9273-9292 Msa1448730:CDS 50.0%
! TCGCTTCGCGTTTTCAATGG+CGG - tig0032299:9451-9470 Msa1448730:CDS 50.0%
! GAATCTGGTTTCCGGAGAGT+CGG - tig0032299:9589-9608 Msa1448730:CDS 50.0%
GTTTCCGGAGAGTCGGTTAT+TGG - tig0032299:9596-9615 Msa1448730:CDS 50.0%
TATTGTCGCGGAACGGGATA+AGG + tig0032299:9895-9914 Msa1448730:intergenic 50.0%
ACCTTTCATGGAATCAGGGC+TGG - tig0032299:10223-10242 Msa1448730:CDS 50.0%
ACCAGCCCTGATTCCATGAA+AGG + tig0032299:10227-10246 Msa1448730:intergenic 50.0%
TCTTGAGCACAGGCACAATC+CGG - tig0032299:10367-10386 Msa1448730:CDS 50.0%
AGCAAGCCGTGCATCAAGAA+TGG + tig0032299:10482-10501 Msa1448730:intergenic 50.0%
! AGGGCGTCCTCATATACCTT+TGG + tig0032299:10932-10951 Msa1448730:intergenic 50.0%
!! CTCTGGAATCCCTGTGATCA+TGG + tig0032299:11271-11290 Msa1448730:intergenic 50.0%
CATGATCACAGGGATTCCAG+AGG - tig0032299:11269-11288 Msa1448730:CDS 50.0%
ATTCATCCCAGGGAGTGAGA+TGG - tig0032299:11528-11547 Msa1448730:intron 50.0%
CAACTTCCATCTCACTCCCT+GGG + tig0032299:11537-11556 Msa1448730:intergenic 50.0%
TCAACTTCCATCTCACTCCC+TGG + tig0032299:11538-11557 Msa1448730:intergenic 50.0%
GAGTGAGATGGAAGTTGACC+AGG - tig0032299:11540-11559 Msa1448730:intron 50.0%
ACCAGGAAAATCCGTCACCT+AGG - tig0032299:11557-11576 Msa1448730:intron 50.0%
GGTGGCTCCAGGAGATAATG+CGG + tig0032299:8975-8994 Msa1448730:intergenic 55.0%
! TCGCGTTTTCAATGGCGGTC+CGG - tig0032299:9456-9475 Msa1448730:CDS 55.0%
TTTGCTTCCTGGGTGGACCT+CGG + tig0032299:10397-10416 Msa1448730:intergenic 55.0%
TAGCTGCTGCACTGTGAGGA+TGG + tig0032299:10774-10793 Msa1448730:intergenic 55.0%
AGGATAGCTGCTGCACTGTG+AGG + tig0032299:10778-10797 Msa1448730:intergenic 55.0%
TCCATTCGGTCCACGCGTAA+GGG + tig0032299:10951-10970 Msa1448730:intergenic 55.0%
GCTACAACCCCTCCTCCATT+CGG + tig0032299:10965-10984 Msa1448730:intergenic 55.0%
!!! GCCTAGGTGACGGATTTTCC+TGG + tig0032299:11561-11580 Msa1448730:intergenic 55.0%
AGGCACAATCCGGAGTTCCG+AGG - tig0032299:10377-10396 Msa1448730:CDS 60.0%
TATGAGGACGCCCTTACGCG+TGG - tig0032299:10938-10957 Msa1448730:intron 60.0%
CTCCATTCGGTCCACGCGTA+AGG + tig0032299:10952-10971 Msa1448730:intergenic 60.0%
CTTACGCGTGGACCGAATGG+AGG - tig0032299:10950-10969 Msa1448730:intron 60.0%
TAGCAAGGGGAGAGTCCCTC+TGG + tig0032299:11288-11307 Msa1448730:intergenic 60.0%
CTGGGTGGACCTCGGAACTC+CGG + tig0032299:10389-10408 Msa1448730:intergenic 65.0%
GCCCTTACGCGTGGACCGAA+TGG - tig0032299:10947-10966 Msa1448730:intron 65.0%
ACGCGTGGACCGAATGGAGG+AGG - tig0032299:10953-10972 Msa1448730:intron 65.0%
CGCGTGGACCGAATGGAGGA+GGG - tig0032299:10954-10973 Msa1448730:intron 65.0%
GCGTGGACCGAATGGAGGAG+GGG - tig0032299:10955-10974 Msa1448730:intron 65.0%
CGGAGTTCCGAGGTCCACCC+AGG - tig0032299:10387-10406 Msa1448730:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0032299 gene 7239 12002 7239 ID=Msa1448730;Name=Msa1448730
tig0032299 mRNA 7239 12002 7239 ID=Msa1448730-mRNA-1;Parent=Msa1448730;Name=Msa1448730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=491|1|1|1|0.83|0.71|7|267|932
tig0032299 exon 7239 7961 7239 ID=Msa1448730-mRNA-1:exon:16597;Parent=Msa1448730-mRNA-1
tig0032299 exon 8157 8566 8157 ID=Msa1448730-mRNA-1:exon:16596;Parent=Msa1448730-mRNA-1
tig0032299 exon 8659 8690 8659 ID=Msa1448730-mRNA-1:exon:16595;Parent=Msa1448730-mRNA-1
tig0032299 exon 8809 9086 8809 ID=Msa1448730-mRNA-1:exon:16594;Parent=Msa1448730-mRNA-1
tig0032299 exon 9260 10599 9260 ID=Msa1448730-mRNA-1:exon:16593;Parent=Msa1448730-mRNA-1
tig0032299 exon 11077 11426 11077 ID=Msa1448730-mRNA-1:exon:16592;Parent=Msa1448730-mRNA-1
tig0032299 exon 11579 12002 11579 ID=Msa1448730-mRNA-1:exon:16591;Parent=Msa1448730-mRNA-1
tig0032299 five_prime_UTR 11579 12002 11579 ID=Msa1448730-mRNA-1:five_prime_utr;Parent=Msa1448730-mRNA-1
tig0032299 five_prime_UTR 11360 11426 11360 ID=Msa1448730-mRNA-1:five_prime_utr;Parent=Msa1448730-mRNA-1
tig0032299 CDS 11077 11359 11077 ID=Msa1448730-mRNA-1:cds;Parent=Msa1448730-mRNA-1
tig0032299 CDS 9260 10599 9260 ID=Msa1448730-mRNA-1:cds;Parent=Msa1448730-mRNA-1
tig0032299 CDS 8809 9086 8809 ID=Msa1448730-mRNA-1:cds;Parent=Msa1448730-mRNA-1
tig0032299 CDS 8659 8690 8659 ID=Msa1448730-mRNA-1:cds;Parent=Msa1448730-mRNA-1
tig0032299 CDS 8157 8566 8157 ID=Msa1448730-mRNA-1:cds;Parent=Msa1448730-mRNA-1
tig0032299 CDS 7506 7961 7506 ID=Msa1448730-mRNA-1:cds;Parent=Msa1448730-mRNA-1
tig0032299 three_prime_UTR 7239 7505 7239 ID=Msa1448730-mRNA-1:three_prime_utr;Parent=Msa1448730-mRNA-1
Gene Sequence

>Msa1448730

ATGGAGGTGTTAGGAGTAAAGGGTTTTGTCCTCTTGTTTTTCTGTTTGTGGATTCCAAATGAAGTTGTGGCTATAATTGGAAACTCTACTGTTTCTTCTAGACCAACTGTTGTGAAAATTGGAGCACTGTTTACTGTTGATTCTGTGATTGGAAGATCAGCTCAACAAGGAATCAAAACTGCAATTGATGATGTTAATGCTAATAAGACTATTCTTCCTGGTATTAAAATGGATGTTATTTTTCATGATACAAATTGCAGTGGATTTATTGGAACAGTTGAAGCTTTGCAGTTGATGGAGAATGAAGTGATTGCCACAATTGGTCCACAATCCTCAGGAATAGCTCATATCATCGCTCATGTAGCTAATGAACTCCATGTACCTCTTCTTTCATTTGGGGCAACAGACCCTACCCTATCTTCTCTGCAGTTTCCATATTTTGTCCGAACCACGCACAGCGACTATTTTCAGATGTATGCAATTGCAGACATTGTTGATTTTTATAGATGGAGGCAAGTAATTGCCATTTTTGTAGACGATGATTATGGAAGAAACGGAATTTCAATACTCGGAGATGCGCTAGCAAAGAAACGCGGCAAGATATCTTACAAAGCCGCATTATCTCCTGGAGCCACCAAGGATGATATCAGTATCTTGCTAAATAGTGTGAACTTAATGGAATCAAGAGTCTTTGTTGTTCATGTTAATCCCGATCATGGTTTGAATATTTTTACTATTGCCAAGAATCTTGGAATGATGACTAGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAAGTTGGATTCAATGGAGCCAGTTGATACTAACACATTGAAACTCCTTCAAGGTGTTGTAGCTTTGAGGCATCACACTCCTGATACAAATCTCAAAAAAAGTTTTTTCTCTAGGTTGAAGAACGCAAACGGCACGGAAACTACAAGCTTCAATTCTTATGCTTTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTTGATGCTTTACTCAAAGAAGGTGGAAACATATCTTTCTCATCTGACCCTAAGCTGATTGACACAAAAGGAAGCATGTTGCATTTGTCTTCGCTTCGCGTTTTCAATGGCGGTCCGGACTTTCTCCCTACACTTTTGAGAATGAACTTCACTGGTTTGAGTGGTCAGATTCAGTTCAATGTAGACAAGAATCTAATTCGTCCATCATATGATATCCTTAACATCGGTGAATCTGGTTTCCGGAGAGTCGGTTATTGGTCTAATTACTCCGGTCTATCAGTTTTAGCTCCTGAAGTTTTGTACAAGAGACCACCTAACACTTCAATAAGCAACCAAAAACTGTTCAATGTTTTGTGGCCTGGAGAAACTATAGCTACACCAAGAGGATGGGTTTTCCCAAACAATGGAAAGCCTTTGAGAATAGCAGTGCCTCACAGAATAAGCTACCTCGAGTTTGTTTCTAAGGACAAGAATCCACCAGGAGTTAAAGGCTATTGCATTGATATCTTCGAAGCAGCCATAAACTTGTTGCCTTATCCCGTTCCGCGACAATATATATTATTCGGAGATGGTAAAAGAAATCCCGACTACAGCCAGCTTGTTAATCAGGTTGCACTAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGAACAAGGATTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCTTGGGCTTTCCTTAAACCATTCACTGCTCAAATGTGGTGTGTTACCGGCGCCTTTTTCCTTTTTGTTGGTGCTGTAGTATGGATTCTTGAGCACAGGCACAATCCGGAGTTCCGAGGTCCACCCAGGAAGCAAATTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAAAACACTGTGAGTGGTCTTGGGAGATTTGTGCTAATCATATGGCTTTTTGTAGTATTAATTATCAATTCAAGCTACACAGCAAGCTTAACATCCATCCTCACAGTGCAGCAGCTATCCTCACAAATTGAAGGAATTGACAGCTTGATATCAGGTAATCAACCAATTGGAATTCAAGACGGGTCATTTGCAAGAAGGTATCTGATAGATGAACTCAATATACAACCATCTAGGATAGTTTCATTGAGAGATCCAAAGGTATATGAGGACGCCCTTACGCGTGGACCGAATGGAGGAGGGGTTGTAGCTATTGTTGATGAGCTTCCTTATATTGAACTCTTTATGTCTGGTACCAACTGCAAGTTCAGAACCGTTGGAAATGTGTTCACTAAAAGTGGTTGGGGATTTGGATTCCAGAGGGACTCTCCCCTTGCTATTGATATGTCAACTGCAATTCTTCAACTCTCAGAAAATGGTGACCTGCAAAAGATCCACGACAAATGGCTTTCAAGACAGAACTGTGGTGCAAAAGTTAACGACACTGATTCAAATGAACTCTCTCTTAAAAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTCTCATTGCTTTGATTGCATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATTCATCCCAGGGAGTGAGATGGAAGTTGACCAGGAAAATCCGTCACCTAGGCCAAGAAAAACATTTCTATCTTCGAGAAGCTTCAAAGACTTGATTGTATTTGTGGATAAGAGAGAGAGAGAAATAAAGGAGATACTTAGGCAGAAGAGTAAGAAAAGGAGACGTGACCAGAGCTTAGATGATCAGTTTGATTCACCACCTACCTAA
Protein sequence

>Msa1448730

MEVLGVKGFVLLFFCLWIPNEVVAIIGNSTVSSRPTVVKIGALFTVDSVIGRSAQQGIKTAIDDVNANKTILPGIKMDVIFHDTNCSGFIGTVEALQLMENEVIATIGPQSSGIAHIIAHVANELHVPLLSFGATDPTLSSLQFPYFVRTTHSDYFQMYAIADIVDFYRWRQVIAIFVDDDYGRNGISILGDALAKKRGKISYKAALSPGATKDDISILLNSVNLMESRVFVVHVNPDHGLNIFTIAKNLGMMTSGYVWIATDWLPSKLDSMEPVDTNTLKLLQGVVALRHHTPDTNLKKSFFSRLKNANGTETTSFNSYALYAYDSVWLAAYALDALLKEGGNISFSSDPKLIDTKGSMLHLSSLRVFNGGPDFLPTLLRMNFTGLSGQIQFNVDKNLIRPSYDILNIGESGFRRVGYWSNYSGLSVLAPEVLYKRPPNTSISNQKLFNVLWPGETIATPRGWVFPNNGKPLRIAVPHRISYLEFVSKDKNPPGVKGYCIDIFEAAINLLPYPVPRQYILFGDGKRNPDYSQLVNQVALNNFDAAVGDVTIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPRKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGNQPIGIQDGSFARRYLIDELNIQPSRIVSLRDPKVYEDALTRGPNGGGVVAIVDELPYIELFMSGTNCKFRTVGNVFTKSGWGFGFQRDSPLAIDMSTAILQLSENGDLQKIHDKWLSRQNCGAKVNDTDSNELSLKSFWGLFLICGIACLIALIAFFVRVFCQYMKFIPGSEMEVDQENPSPRPRKTFLSSRSFKDLIVFVDKREREIKEILRQKSKKRRRDQSLDDQFDSPPT*