Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096040 | XP_024630378.1 | 97.050 | 339 | 9 | 1 | 1 | 339 | 1 | 338 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096040 | sp|Q84N34|HHP2_ARATH | 57.593 | 349 | 128 | 5 | 1 | 338 | 19 | 358 | 2.69e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096040 | A0A396JFZ6 | 97.050 | 339 | 9 | 1 | 1 | 339 | 1 | 338 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096040 | Msa0288290 | 0.881481 | 2.316642e-70 | -8.615850e-47 |
| Msa0096040 | Msa0288370 | 0.928162 | 4.264317e-92 | -8.615850e-47 |
| Msa0096040 | Msa0485340 | 0.916111 | 2.636389e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096040 | MtrunA17_Chr2g0305481 | 97.050 | 339 | 9 | 1 | 1 | 339 | 1 | 338 | 0.0 | 669 |
| Msa0096040 | MtrunA17_Chr4g0064481 | 49.085 | 328 | 158 | 3 | 4 | 330 | 38 | 357 | 3.24e-108 | 320 |
| Msa0096040 | MtrunA17_Chr5g0401021 | 42.458 | 358 | 161 | 4 | 7 | 330 | 28 | 374 | 2.46e-90 | 275 |
| Msa0096040 | MtrunA17_Chr3g0134921 | 42.500 | 360 | 171 | 5 | 7 | 330 | 32 | 391 | 9.39e-88 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096040 | AT4G30850.2 | 57.593 | 349 | 128 | 5 | 1 | 338 | 19 | 358 | 2.73e-143 | 409 |
| Msa0096040 | AT4G30850.1 | 57.593 | 349 | 128 | 5 | 1 | 338 | 19 | 358 | 2.73e-143 | 409 |
| Msa0096040 | AT2G24150.1 | 56.575 | 327 | 127 | 4 | 12 | 338 | 33 | 344 | 6.62e-131 | 377 |
| Msa0096040 | AT2G24150.2 | 67.157 | 204 | 67 | 0 | 135 | 338 | 52 | 255 | 1.01e-102 | 302 |
| Msa0096040 | AT5G20270.1 | 46.505 | 329 | 130 | 1 | 2 | 330 | 45 | 327 | 1.06e-102 | 305 |
| Msa0096040 | AT4G37680.1 | 43.296 | 358 | 174 | 5 | 2 | 330 | 23 | 380 | 1.18e-91 | 279 |
| Msa0096040 | AT4G37680.5 | 43.296 | 358 | 174 | 5 | 2 | 330 | 23 | 380 | 1.18e-91 | 279 |
| Msa0096040 | AT4G37680.2 | 43.296 | 358 | 174 | 5 | 2 | 330 | 23 | 380 | 1.18e-91 | 279 |
| Msa0096040 | AT4G37680.3 | 43.296 | 358 | 174 | 5 | 2 | 330 | 28 | 385 | 1.78e-91 | 278 |
| Msa0096040 | AT4G37680.4 | 43.296 | 358 | 174 | 5 | 2 | 330 | 28 | 385 | 1.78e-91 | 278 |
| Msa0096040 | AT4G38320.1 | 43.466 | 352 | 170 | 5 | 2 | 324 | 23 | 374 | 4.47e-89 | 272 |
| Msa0096040 | AT2G40710.1 | 54.545 | 88 | 40 | 0 | 243 | 330 | 1 | 88 | 3.04e-27 | 103 |
| Msa0096040 | AT4G38290.1 | 64.516 | 62 | 22 | 0 | 269 | 330 | 42 | 103 | 6.28e-22 | 89.7 |
Find 91 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACGTTTGAGACAGATTT+TGG | 0.180770 | 1_3:-1477047 | Msa0096040:CDS |
| TTTGATAGGGTGAGAGAATA+TGG | 0.256564 | 1_3:-1477013 | Msa0096040:CDS |
| AATTGGATATGAGCTCTTAA+TGG | 0.270809 | 1_3:-1476588 | Msa0096040:CDS |
| GTTGTTCTTGTACAGTCATT+TGG | 0.300362 | 1_3:-1481725 | Msa0096040:intron |
| AGCATCTTTATTCCTTTCAA+TGG | 0.327223 | 1_3:-1476681 | Msa0096040:CDS |
| TTGTTCTTGTACAGTCATTT+GGG | 0.334474 | 1_3:-1481724 | Msa0096040:intron |
| AAAAGACAACGAGTTCATAT+TGG | 0.344022 | 1_3:-1481897 | Msa0096040:CDS |
| GCGATGGCGGCGACGGAAGC+TGG | 0.345791 | 1_3:-1481682 | Msa0096040:CDS |
| AACAATCCATTGGTAGGGTT+TGG | 0.348659 | 1_3:+1476312 | None:intergenic |
| TTCATGCTCTCGTAAGCAAT+TGG | 0.354615 | 1_3:-1476634 | Msa0096040:CDS |
| ACTCTATTTGACATCAATAT+CGG | 0.361427 | 1_3:-1476774 | Msa0096040:CDS |
| ATTTATTTAGATTAGATGAT+TGG | 0.363801 | 1_3:+1482211 | None:intergenic |
| TGACTATGTTTGTTCGTTGT+TGG | 0.367410 | 1_3:-1482119 | Msa0096040:five_prime_UTR |
| GGGAGCAGAGTTGGGGCGAC+GGG | 0.368194 | 1_3:-1481432 | Msa0096040:intron |
| CCTGGAGCATTTGATATTGC+AGG | 0.369519 | 1_3:-1476506 | Msa0096040:CDS |
| AGTTCATATTGGATTATTAC+CGG | 0.383152 | 1_3:-1481886 | Msa0096040:CDS |
| AAACGAAAACGAAGGAATAA+AGG | 0.390532 | 1_3:-1482070 | Msa0096040:five_prime_UTR |
| GACTATGTTTGTTCGTTGTT+GGG | 0.392950 | 1_3:-1482118 | Msa0096040:five_prime_UTR |
| TCGCATATTGTAGTTGCAAT+TGG | 0.397993 | 1_3:-1476605 | Msa0096040:CDS |
| AAAATGAACCATGGCCATCT+TGG | 0.399515 | 1_3:+1476977 | None:intergenic |
| TCATGCTCTCGTAAGCAATT+GGG | 0.408002 | 1_3:-1476633 | Msa0096040:CDS |
| GCGACGGAAGCTGGAGGAGG+AGG | 0.408012 | 1_3:-1481673 | Msa0096040:CDS |
| ACAACGAAACGCTAAATGTT+TGG | 0.429326 | 1_3:-1481817 | Msa0096040:CDS |
| ATTGGATATGAGCTCTTAAT+GGG | 0.433906 | 1_3:-1476587 | Msa0096040:CDS |
| ACGGAAGCTGGAGGAGGAGG+AGG | 0.442291 | 1_3:-1481670 | Msa0096040:CDS |
| GGTGAAGTACGAGGAATTGC+CGG | 0.443305 | 1_3:-1481927 | Msa0096040:CDS |
| TGGGAGCAGAGTTGGGGCGA+CGG | 0.450948 | 1_3:-1481433 | Msa0096040:intron |
| AGATTAGATGATTGGTTTCG+TGG | 0.457726 | 1_3:+1482219 | None:intergenic |
| GGAATAAAGGTGCAAGCGAC+GGG | 0.459408 | 1_3:-1482057 | Msa0096040:five_prime_UTR |
| ATGGGCATTCTATATGCAAC+AGG | 0.462499 | 1_3:-1476569 | Msa0096040:CDS |
| GCATCTTTATTCCTTTCAAT+GGG | 0.465831 | 1_3:-1476680 | Msa0096040:CDS |
| CGAATATGAAGGGTAATTAT+CGG | 0.467352 | 1_3:-1481970 | Msa0096040:exon |
| GTAGTAAATTGGAGCATAGA+AGG | 0.468904 | 1_3:+1476826 | None:intergenic |
| TGGAGTGGCAAGCAAGAAGA+TGG | 0.469300 | 1_3:+1476912 | None:intergenic |
| CCGGTCGGAATGGTCGGTTA+AGG | 0.472175 | 1_3:-1481867 | Msa0096040:CDS |
| GTGTTGCTTACTTTGCAGTT+CGG | 0.481770 | 1_3:-1476939 | Msa0096040:CDS |
| TGATTATTGCCATTACTCCT+AGG | 0.484435 | 1_3:+1476750 | None:intergenic |
| GCGGCGACGGAAGCTGGAGG+AGG | 0.486075 | 1_3:-1481676 | Msa0096040:CDS |
| CATTACAACAATCCATTGGT+AGG | 0.487060 | 1_3:+1476306 | None:intergenic |
| ATGAAAGTGATGGGGAAAGA+AGG | 0.490228 | 1_3:+1476726 | None:intergenic |
| TTTAATATTTGCAGCGATGG+CGG | 0.490595 | 1_3:-1481695 | Msa0096040:CDS |
| TGGATTATTACCGGTCGGAA+TGG | 0.492532 | 1_3:-1481877 | Msa0096040:CDS |
| AAGGAATAAAGATGCTCTAA+AGG | 0.495018 | 1_3:+1476688 | None:intergenic |
| GAAGCTGGAGGAGGAGGAGG+TGG | 0.496794 | 1_3:-1481667 | Msa0096040:CDS |
| GCGACGGGGTCGTTGAAGAC+GGG | 0.498294 | 1_3:-1481417 | Msa0096040:CDS |
| AGGAATAAAGGTGCAAGCGA+CGG | 0.501490 | 1_3:-1482058 | Msa0096040:five_prime_UTR |
| GCTCCAGGCTTCCATCTCTC+TGG | 0.506779 | 1_3:+1476521 | None:intergenic |
| TTATTACCGGTCGGAATGGT+CGG | 0.518312 | 1_3:-1481873 | Msa0096040:CDS |
| TTGACATCAATATCGGTCCT+AGG | 0.520515 | 1_3:-1476767 | Msa0096040:CDS |
| ATACCAGAGAGATGGAAGCC+TGG | 0.520590 | 1_3:-1476524 | Msa0096040:CDS |
| CGAACAAACATAGTCATATG+AGG | 0.522377 | 1_3:+1482126 | None:intergenic |
| ATTTGCAGCGATGGCGGCGA+CGG | 0.523006 | 1_3:-1481689 | Msa0096040:CDS |
| GGCGACGGGGTCGTTGAAGA+CGG | 0.536340 | 1_3:-1481418 | Msa0096040:CDS |
| CCAATGGATTGTTGTAATGC+AGG | 0.537390 | 1_3:-1476302 | Msa0096040:three_prime_UTR |
| GATAGTATAAATTTAATCGC+CGG | 0.538820 | 1_3:-1482020 | Msa0096040:five_prime_UTR |
| ATCGAGGTGATGAAAGTGAT+GGG | 0.541396 | 1_3:+1476717 | None:intergenic |
| TAATTACCCTTCATATTCGC+CGG | 0.541667 | 1_3:+1481974 | None:intergenic |
| AATATCGGTCCTAGGAGTAA+TGG | 0.546762 | 1_3:-1476759 | Msa0096040:CDS |
| GCGGAAGAGAACGTTGCGAT+TGG | 0.550524 | 1_3:-1481948 | Msa0096040:CDS |
| ATTACAACAATCCATTGGTA+GGG | 0.555645 | 1_3:+1476307 | None:intergenic |
| AAATAGAGTAACCTTGCGTA+AGG | 0.563549 | 1_3:+1476788 | None:intergenic |
| CATGCTCTCGTAAGCAATTG+GGG | 0.565438 | 1_3:-1476632 | Msa0096040:CDS |
| AGACTAGTAAAATGCACATG+TGG | 0.568074 | 1_3:+1476388 | None:intergenic |
| TGTTGGGTATAAATAGAGAA+AGG | 0.573206 | 1_3:-1482102 | Msa0096040:five_prime_UTR |
| TTCTTGTACAGTCATTTGGG+AGG | 0.573521 | 1_3:-1481721 | Msa0096040:intron |
| TAACTAGAATACCAGAGAGA+TGG | 0.576093 | 1_3:-1476532 | Msa0096040:CDS |
| CCTGCAATATCAAATGCTCC+AGG | 0.579712 | 1_3:+1476506 | None:intergenic |
| AATCGAGGTGATGAAAGTGA+TGG | 0.582826 | 1_3:+1476716 | None:intergenic |
| TGAAAGTGATGGGGAAAGAA+GGG | 0.590589 | 1_3:+1476727 | None:intergenic |
| GCTCTAAAGGTTCGAAATCG+AGG | 0.591484 | 1_3:+1476701 | None:intergenic |
| CATATTGGATTATTACCGGT+CGG | 0.594477 | 1_3:-1481882 | Msa0096040:CDS |
| GAACAGAAACAATTCCAAGA+TGG | 0.595445 | 1_3:-1476991 | Msa0096040:CDS |
| TAGCAACCAAACCCTACCAA+TGG | 0.597356 | 1_3:-1476318 | Msa0096040:three_prime_UTR |
| GACTAGTAAAATGCACATGT+GGG | 0.615594 | 1_3:+1476389 | None:intergenic |
| CCTGCATTACAACAATCCAT+TGG | 0.622470 | 1_3:+1476302 | None:intergenic |
| AAACAATTCCAAGATGGCCA+TGG | 0.626037 | 1_3:-1476985 | Msa0096040:CDS |
| GGAGTGGCAAGCAAGAAGAT+GGG | 0.628166 | 1_3:+1476913 | None:intergenic |
| TGGCATGTGCAAGTGCCCCA+AGG | 0.634193 | 1_3:+1476450 | None:intergenic |
| ATGGCGGCGACGGAAGCTGG+AGG | 0.636720 | 1_3:-1481679 | Msa0096040:CDS |
| CTTACGAGAGCATGAACCGC+CGG | 0.643670 | 1_3:+1476641 | None:intergenic |
| GTGGTGTGGGAGCAGAGTTG+GGG | 0.644548 | 1_3:-1481439 | Msa0096040:intron |
| GGAGCAGAGTTGGGGCGACG+GGG | 0.647379 | 1_3:-1481431 | Msa0096040:intron |
| TCGAGGTGATGAAAGTGATG+GGG | 0.648692 | 1_3:+1476718 | None:intergenic |
| ACAGGCTAAAGCGTTTGGAG+TGG | 0.658549 | 1_3:+1476897 | None:intergenic |
| CCTTAACCGACCATTCCGAC+CGG | 0.662396 | 1_3:+1481867 | None:intergenic |
| GATTATGACAAGTGTCGCAG+TGG | 0.674182 | 1_3:+1476430 | None:intergenic |
| AAGACGGGAAAACAGATCAA+CGG | 0.676522 | 1_3:-1481402 | Msa0096040:CDS |
| GTTGCGATTGGTGAAGTACG+AGG | 0.684760 | 1_3:-1481936 | Msa0096040:CDS |
| CCACCTAAGAAAATGAACCA+TGG | 0.695018 | 1_3:+1476968 | None:intergenic |
| ATATGAAGGGTAATTATCGG+CGG | 0.702822 | 1_3:-1481967 | Msa0096040:CDS |
| GAGTAACAAAACGAAAACGA+AGG | 0.703111 | 1_3:-1482078 | Msa0096040:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGGAATTTTAAAATA+TGG | + | chr1_3:1476298-1476317 | None:intergenic | 10.0% |
| !! | ATTATTTGGAAAAAAAAAAA+AGG | + | chr1_3:1477952-1477971 | None:intergenic | 10.0% |
| !! | TATAGTTCTTATAAAATTTA+AGG | - | chr1_3:1478230-1478249 | Msa0096040:intron | 10.0% |
| !!! | TAAAAGTTTATAATTTTGTA+GGG | + | chr1_3:1478344-1478363 | None:intergenic | 10.0% |
| !!! | TTAAAAGTTTATAATTTTGT+AGG | + | chr1_3:1478345-1478364 | None:intergenic | 10.0% |
| !! | AAAAGTGAATAAATTTATTT+AGG | + | chr1_3:1478376-1478395 | None:intergenic | 10.0% |
| !!! | ACAATTTTTTTTTTTCAAAA+GGG | - | chr1_3:1479315-1479334 | Msa0096040:intron | 10.0% |
| !!! | TAACTTTTTTTTTTTTTTTG+AGG | + | chr1_3:1479507-1479526 | None:intergenic | 10.0% |
| !!! | TTAAAATTATTTTGGAATTT+TGG | - | chr1_3:1481344-1481363 | Msa0096040:intron | 10.0% |
| !! | ATTTATTTAGATTAGATGAT+TGG | + | chr1_3:1476269-1476288 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTCTTTTTTTAT+TGG | + | chr1_3:1476313-1476332 | None:intergenic | 15.0% |
| !! | AAAAAAAGAAAAGAAAAGAA+TGG | - | chr1_3:1476315-1476334 | Msa0096040:three_prime_UTR | 15.0% |
| !! | ATTTAATGTCAAAAATAAGA+AGG | + | chr1_3:1476884-1476903 | None:intergenic | 15.0% |
| !!! | TCATCAAAATTTTATCAATT+AGG | + | chr1_3:1477432-1477451 | None:intergenic | 15.0% |
| !!! | AATAATTACACTAATTTTGT+AGG | + | chr1_3:1478274-1478293 | None:intergenic | 15.0% |
| !! | CAAAATTAGTGTAATTATTA+TGG | - | chr1_3:1478275-1478294 | Msa0096040:intron | 15.0% |
| !!! | ACATAAGTTTATTATAGTTT+TGG | - | chr1_3:1478575-1478594 | Msa0096040:intron | 15.0% |
| !!! | TTTTTATTGGTCAAAAATAA+TGG | + | chr1_3:1478902-1478921 | None:intergenic | 15.0% |
| !!! | TTGTTTTTCTATCTTTTTAT+TGG | + | chr1_3:1478915-1478934 | None:intergenic | 15.0% |
| !!! | GACAATTTTTTTTTTTCAAA+AGG | - | chr1_3:1479314-1479333 | Msa0096040:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGAGGAA+AGG | + | chr1_3:1479502-1479521 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGAATCTAC+TGG | - | chr1_3:1479625-1479644 | Msa0096040:intron | 15.0% |
| !!! | TTTTCCATTAAAATAAAACA+TGG | - | chr1_3:1479654-1479673 | Msa0096040:intron | 15.0% |
| !!! | CTTTTTTTACTTTTTTACTT+TGG | + | chr1_3:1480089-1480108 | None:intergenic | 15.0% |
| !!! | TATTTGATTTTATATGAATC+CGG | - | chr1_3:1481100-1481119 | Msa0096040:intron | 15.0% |
| !!! | ATAAACAGAAACATTTTTTA+GGG | + | chr1_3:1481219-1481238 | None:intergenic | 15.0% |
| !!! | AATAAACAGAAACATTTTTT+AGG | + | chr1_3:1481220-1481239 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGAGCTTTTTTAA+CGG | - | chr1_3:1476946-1476965 | Msa0096040:CDS | 20.0% |
| !!! | AATAATTTTAAGGATGGTTT+TGG | - | chr1_3:1476989-1477008 | Msa0096040:CDS | 20.0% |
| !!! | ATAATTTTAAGGATGGTTTT+GGG | - | chr1_3:1476990-1477009 | Msa0096040:CDS | 20.0% |
| !! | AGAAATTTATAGTTTCGTAT+TGG | - | chr1_3:1477164-1477183 | Msa0096040:intron | 20.0% |
| !! | TTGAAATATTAAAAGAGTCA+TGG | + | chr1_3:1477337-1477356 | None:intergenic | 20.0% |
| !! | TGAAATAAGTAATAATGTAG+AGG | - | chr1_3:1477579-1477598 | Msa0096040:intron | 20.0% |
| !! | AGATAACTAAATAATATTCG+AGG | - | chr1_3:1477981-1478000 | Msa0096040:intron | 20.0% |
| !! | GCAAAAAAGTCATATAAAAA+TGG | - | chr1_3:1479292-1479311 | Msa0096040:intron | 20.0% |
| !!! | AACAAGTTTTCATCAAAAAA+TGG | + | chr1_3:1479390-1479409 | None:intergenic | 20.0% |
| !! | CATAATAGAATAGAATCTAT+TGG | - | chr1_3:1479587-1479606 | Msa0096040:intron | 20.0% |
| !!! | CTATCCATGTTTTATTTTAA+TGG | + | chr1_3:1479661-1479680 | None:intergenic | 20.0% |
| !!! | AATAAATGTTTCTTTTTTCG+AGG | - | chr1_3:1479776-1479795 | Msa0096040:intron | 20.0% |
| !! | TATAAGAATGTCAAAATACT+GGG | - | chr1_3:1479899-1479918 | Msa0096040:intron | 20.0% |
| !!! | AAGAAATCTTTTCTCAATTA+AGG | - | chr1_3:1480588-1480607 | Msa0096040:intron | 20.0% |
| !!! | TTTAGCAGTTCTAATATTAT+TGG | + | chr1_3:1480748-1480767 | None:intergenic | 20.0% |
| !!! | ATTTGATTTTATATGAATCC+GGG | - | chr1_3:1481101-1481120 | Msa0096040:intron | 20.0% |
| !! | CATTTATTAAGCATCTATTT+AGG | + | chr1_3:1481185-1481204 | None:intergenic | 20.0% |
| !! | AAACTAAACAAATGATTGAT+TGG | + | chr1_3:1481405-1481424 | None:intergenic | 20.0% |
| ! | GATAGTATAAATTTAATCGC+CGG | - | chr1_3:1476457-1476476 | Msa0096040:CDS | 25.0% |
| !!! | TCTTTTCTTTTTTCGTTTTC+CGG | + | chr1_3:1476479-1476498 | None:intergenic | 25.0% |
| !! | CGAAAAAAGAAAAGATTTTC+CGG | - | chr1_3:1476484-1476503 | Msa0096040:CDS | 25.0% |
| ! | AGTTCATATTGGATTATTAC+CGG | - | chr1_3:1476591-1476610 | Msa0096040:CDS | 25.0% |
| !!! | TTTTTCTGAGCTTTTTTAAC+GGG | - | chr1_3:1476947-1476966 | Msa0096040:CDS | 25.0% |
| ! | ACCATCCTTAAAATTATTAC+CGG | + | chr1_3:1476987-1477006 | None:intergenic | 25.0% |
| ! | TACAAAGTTAGAGACTAATT+TGG | + | chr1_3:1477296-1477315 | None:intergenic | 25.0% |
| ! | TAAGAATAGATTACAACGAT+AGG | - | chr1_3:1477475-1477494 | Msa0096040:intron | 25.0% |
| ! | AATTGAGTAAACCATGAAAT+TGG | + | chr1_3:1477503-1477522 | None:intergenic | 25.0% |
| !!! | TCGTTATCCATTTTTCTTAA+CGG | - | chr1_3:1477654-1477673 | Msa0096040:intron | 25.0% |
| !!! | ATTTTGACCGTTAAGAAAAA+TGG | + | chr1_3:1477664-1477683 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCCTTGTTTATGT+TGG | + | chr1_3:1477776-1477795 | None:intergenic | 25.0% |
| !! | AAATCAAGTTGCAATCTTAT+TGG | + | chr1_3:1477877-1477896 | None:intergenic | 25.0% |
| !!! | CATACATACTTTTGAGTATA+AGG | + | chr1_3:1477927-1477946 | None:intergenic | 25.0% |
| ! | TATCTTGTGTGTAGATTATT+TGG | + | chr1_3:1477966-1477985 | None:intergenic | 25.0% |
| !!! | GATCACTTATTTGCTAATTT+TGG | + | chr1_3:1478129-1478148 | None:intergenic | 25.0% |
| !! | TTTTAACAGTCGAAAAGTTT+AGG | - | chr1_3:1478300-1478319 | Msa0096040:intron | 25.0% |
| ! | TCTTTCAAACTACAATATCA+TGG | - | chr1_3:1478492-1478511 | Msa0096040:intron | 25.0% |
| !!! | ATAGTTTTGGAAAGTGTATT+TGG | - | chr1_3:1478588-1478607 | Msa0096040:intron | 25.0% |
| !!! | ACTTTTGTTATATTAGTGAC+CGG | - | chr1_3:1479104-1479123 | Msa0096040:intron | 25.0% |
| ! | AAAGAAGTAATTAATGCACT+TGG | - | chr1_3:1479264-1479283 | Msa0096040:intron | 25.0% |
| !!! | TAAAGAGTGTTTAAGTGTTT+TGG | + | chr1_3:1479429-1479448 | None:intergenic | 25.0% |
| ! | TCGTGTTGTCAATTTATTAA+AGG | + | chr1_3:1479459-1479478 | None:intergenic | 25.0% |
| ! | AGTAATTCTAACTTCTTATC+TGG | + | chr1_3:1479539-1479558 | None:intergenic | 25.0% |
| ! | CTATAAGAATGTCAAAATAC+TGG | - | chr1_3:1479898-1479917 | Msa0096040:intron | 25.0% |
| !!! | TTGTTTTAAGAAGCTAAATG+TGG | + | chr1_3:1480819-1480838 | None:intergenic | 25.0% |
| ! | TTCTCTCACTATATCAATAA+AGG | + | chr1_3:1481274-1481293 | None:intergenic | 25.0% |
| !! | TCAATCATTTGTTTAGTTTC+AGG | - | chr1_3:1481406-1481425 | Msa0096040:CDS | 25.0% |
| ! | ACTCTATTTGACATCAATAT+CGG | - | chr1_3:1481703-1481722 | Msa0096040:CDS | 25.0% |
| !!! | TTTCATATTTTTGTTGTCCT+TGG | - | chr1_3:1482010-1482029 | Msa0096040:five_prime_UTR | 25.0% |
| !!! | TTCATATTTTTGTTGTCCTT+GGG | - | chr1_3:1482011-1482030 | Msa0096040:five_prime_UTR | 25.0% |
| TGTTGGGTATAAATAGAGAA+AGG | - | chr1_3:1476375-1476394 | Msa0096040:exon | 30.0% | |
| AAACGAAAACGAAGGAATAA+AGG | - | chr1_3:1476407-1476426 | Msa0096040:CDS | 30.0% | |
| CGAATATGAAGGGTAATTAT+CGG | - | chr1_3:1476507-1476526 | Msa0096040:CDS | 30.0% | |
| ! | TCGTTGTCTTTTAGATATTC+CGG | + | chr1_3:1476572-1476591 | None:intergenic | 30.0% |
| AAAAGACAACGAGTTCATAT+TGG | - | chr1_3:1476580-1476599 | Msa0096040:CDS | 30.0% | |
| TTGTTCTTGTACAGTCATTT+GGG | - | chr1_3:1476753-1476772 | Msa0096040:CDS | 30.0% | |
| ! | CTTTTTAATATTTGCAGCGA+TGG | - | chr1_3:1476779-1476798 | Msa0096040:CDS | 30.0% |
| ! | GTTTTCTGTCTAATATCTAC+AGG | - | chr1_3:1476832-1476851 | Msa0096040:CDS | 30.0% |
| !!! | TTTTCTGAGCTTTTTTAACG+GGG | - | chr1_3:1476948-1476967 | Msa0096040:CDS | 30.0% |
| ! | CATGACCGGTAATAATTTTA+AGG | - | chr1_3:1476979-1476998 | Msa0096040:CDS | 30.0% |
| !! | ACCGGTAATAATTTTAAGGA+TGG | - | chr1_3:1476983-1477002 | Msa0096040:CDS | 30.0% |
| !!! | ATGGTTTTGGGTTTGATTTT+GGG | - | chr1_3:1477002-1477021 | Msa0096040:CDS | 30.0% |
| ! | TTCTCAAAACAAAGTTTTCC+AGG | - | chr1_3:1477104-1477123 | Msa0096040:intron | 30.0% |
| AATGATTAAGAAAGCAAACC+TGG | + | chr1_3:1477125-1477144 | None:intergenic | 30.0% | |
| AAAGTTAGAGACTAATTTGG+TGG | + | chr1_3:1477293-1477312 | None:intergenic | 30.0% | |
| AGAAATTTCTTACAATGACG+TGG | + | chr1_3:1477366-1477385 | None:intergenic | 30.0% | |
| TCCCATTAACATAATTCAGT+TGG | - | chr1_3:1477535-1477554 | Msa0096040:intron | 30.0% | |
| GCCAACTGAATTATGTTAAT+GGG | + | chr1_3:1477539-1477558 | None:intergenic | 30.0% | |
| TGCCAACTGAATTATGTTAA+TGG | + | chr1_3:1477540-1477559 | None:intergenic | 30.0% | |
| TACATATTTCTTGCTTGCTT+TGG | + | chr1_3:1477625-1477644 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTCTTTTCTTCCA+AGG | + | chr1_3:1477728-1477747 | None:intergenic | 30.0% |
| AACAAAAAGAGAAACAAGCT+AGG | - | chr1_3:1477790-1477809 | Msa0096040:intron | 30.0% | |
| AACGATTGCAATCTTTATGT+AGG | + | chr1_3:1477901-1477920 | None:intergenic | 30.0% | |
| !! | ACATACTTTTGAGTATAAGG+AGG | + | chr1_3:1477924-1477943 | None:intergenic | 30.0% |
| TTCTCATAGTACTCCTTTAT+CGG | + | chr1_3:1478061-1478080 | None:intergenic | 30.0% | |
| !! | TTTGCTAATTTTGGCAGAAA+CGG | + | chr1_3:1478120-1478139 | None:intergenic | 30.0% |
| TCAACTCAAACTTTGAATCA+CGG | + | chr1_3:1478700-1478719 | None:intergenic | 30.0% | |
| TCACTAAAGTTGTCATGAAA+TGG | - | chr1_3:1478940-1478959 | Msa0096040:intron | 30.0% | |
| ! | CTTTTGCTTATATTAGTGAC+CGG | + | chr1_3:1479004-1479023 | None:intergenic | 30.0% |
| !! | AAGGGTTTTATGATTAGAGA+CGG | - | chr1_3:1479333-1479352 | Msa0096040:intron | 30.0% |
| ATTACTTACACGACAAAACT+TGG | - | chr1_3:1479553-1479572 | Msa0096040:intron | 30.0% | |
| AAACATGGATAGAAAGAGTT+TGG | - | chr1_3:1479669-1479688 | Msa0096040:intron | 30.0% | |
| TTTAGTGTATGTTTGAATCC+AGG | - | chr1_3:1479801-1479820 | Msa0096040:intron | 30.0% | |
| !!! | TTATCCCTTTTGGAGTTATT+TGG | + | chr1_3:1479985-1480004 | None:intergenic | 30.0% |
| !!! | CTCGATTTTTTTATCCCTTT+TGG | + | chr1_3:1479995-1480014 | None:intergenic | 30.0% |
| !!! | CTTTTGTCTTAGTTTTGTCT+AGG | + | chr1_3:1480042-1480061 | None:intergenic | 30.0% |
| TTGATTCCACTATACATGAA+AGG | - | chr1_3:1480343-1480362 | Msa0096040:intron | 30.0% | |
| TATACATGAAAGGATTACCA+CGG | - | chr1_3:1480353-1480372 | Msa0096040:intron | 30.0% | |
| TGTTCAGCTATTCTCTTAAA+TGG | + | chr1_3:1480550-1480569 | None:intergenic | 30.0% | |
| GAGAAAAGATTTCTTTGTCA+GGG | + | chr1_3:1480583-1480602 | None:intergenic | 30.0% | |
| TGAGAAAAGATTTCTTTGTC+AGG | + | chr1_3:1480584-1480603 | None:intergenic | 30.0% | |
| GTTTGATTGCATATATAGCA+AGG | + | chr1_3:1480653-1480672 | None:intergenic | 30.0% | |
| !! | GTTTATTGATTCATAGTCTG+AGG | + | chr1_3:1480970-1480989 | None:intergenic | 30.0% |
| TTGACTATAACATTACTCTC+TGG | + | chr1_3:1481077-1481096 | None:intergenic | 30.0% | |
| AGAGAGTAATGTTATAGTCA+AGG | - | chr1_3:1481076-1481095 | Msa0096040:intron | 30.0% | |
| !!! | TGGAAGTATCCATTTTTGAT+AGG | - | chr1_3:1481450-1481469 | Msa0096040:intron | 30.0% |
| !!! | GGAAGTATCCATTTTTGATA+GGG | - | chr1_3:1481451-1481470 | Msa0096040:intron | 30.0% |
| CAGAAAAACACGTAGTAAAT+TGG | + | chr1_3:1481665-1481684 | None:intergenic | 30.0% | |
| AAGGAATAAAGATGCTCTAA+AGG | + | chr1_3:1481792-1481811 | None:intergenic | 30.0% | |
| AGCATCTTTATTCCTTTCAA+TGG | - | chr1_3:1481796-1481815 | Msa0096040:intron | 30.0% | |
| GCATCTTTATTCCTTTCAAT+GGG | - | chr1_3:1481797-1481816 | Msa0096040:intron | 30.0% | |
| AATTGGATATGAGCTCTTAA+TGG | - | chr1_3:1481889-1481908 | Msa0096040:CDS | 30.0% | |
| ATTGGATATGAGCTCTTAAT+GGG | - | chr1_3:1481890-1481909 | Msa0096040:CDS | 30.0% | |
| !! | TCATATTTTTGTTGTCCTTG+GGG | - | chr1_3:1482012-1482031 | Msa0096040:five_prime_UTR | 30.0% |
| !! | TTGTCATAATCGATTTTCGA+AGG | - | chr1_3:1482059-1482078 | Msa0096040:five_prime_UTR | 30.0% |
| ATTACAACAATCCATTGGTA+GGG | + | chr1_3:1482173-1482192 | None:intergenic | 30.0% | |
| CGAACAAACATAGTCATATG+AGG | + | chr1_3:1476354-1476373 | None:intergenic | 35.0% | |
| TGACTATGTTTGTTCGTTGT+TGG | - | chr1_3:1476358-1476377 | Msa0096040:three_prime_UTR | 35.0% | |
| GACTATGTTTGTTCGTTGTT+GGG | - | chr1_3:1476359-1476378 | Msa0096040:three_prime_UTR | 35.0% | |
| GAGTAACAAAACGAAAACGA+AGG | - | chr1_3:1476399-1476418 | Msa0096040:CDS | 35.0% | |
| TAATTACCCTTCATATTCGC+CGG | + | chr1_3:1476506-1476525 | None:intergenic | 35.0% | |
| ATATGAAGGGTAATTATCGG+CGG | - | chr1_3:1476510-1476529 | Msa0096040:CDS | 35.0% | |
| CATATTGGATTATTACCGGT+CGG | - | chr1_3:1476595-1476614 | Msa0096040:CDS | 35.0% | |
| ACAACGAAACGCTAAATGTT+TGG | - | chr1_3:1476660-1476679 | Msa0096040:CDS | 35.0% | |
| AACAACAACGATGTCAAACA+TGG | + | chr1_3:1476735-1476754 | None:intergenic | 35.0% | |
| GTTGTTCTTGTACAGTCATT+TGG | - | chr1_3:1476752-1476771 | Msa0096040:CDS | 35.0% | |
| TTTAATATTTGCAGCGATGG+CGG | - | chr1_3:1476782-1476801 | Msa0096040:CDS | 35.0% | |
| !!! | GATGGTTTTGGGTTTGATTT+TGG | - | chr1_3:1477001-1477020 | Msa0096040:CDS | 35.0% |
| !!! | TGGTTTTGGGTTTGATTTTG+GGG | - | chr1_3:1477003-1477022 | Msa0096040:CDS | 35.0% |
| !! | TAATTTGGTGGTTTGCTCAT+TGG | + | chr1_3:1477281-1477300 | None:intergenic | 35.0% |
| AACGATAGGAACCAATTTCA+TGG | - | chr1_3:1477489-1477508 | Msa0096040:intron | 35.0% | |
| AACATAATTCAGTTGGCACT+TGG | - | chr1_3:1477542-1477561 | Msa0096040:intron | 35.0% | |
| ! | CTAGAAAGACTTGCTTGATT+TGG | + | chr1_3:1477699-1477718 | None:intergenic | 35.0% |
| GACAAAGTCCAACATAAACA+AGG | - | chr1_3:1477765-1477784 | Msa0096040:intron | 35.0% | |
| ATAAACCACCAAAATGCACT+AGG | - | chr1_3:1478031-1478050 | Msa0096040:intron | 35.0% | |
| !! | TTGCTAATTTTGGCAGAAAC+GGG | + | chr1_3:1478119-1478138 | None:intergenic | 35.0% |
| CATAATGATCAATTGTGCAC+AGG | + | chr1_3:1478180-1478199 | None:intergenic | 35.0% | |
| ! | TTTGGAAAGTGTATTTGGCT+CGG | - | chr1_3:1478593-1478612 | Msa0096040:intron | 35.0% |
| CAACTCAAACTTTGAATCAC+GGG | + | chr1_3:1478699-1478718 | None:intergenic | 35.0% | |
| AGAGAGAAAAAAGAAGAGAG+AGG | + | chr1_3:1478879-1478898 | None:intergenic | 35.0% | |
| CATTAATAAAGTACACCCTC+CGG | - | chr1_3:1478982-1479001 | Msa0096040:intron | 35.0% | |
| ! | TTTGTTATATTAGTGACCGG+AGG | - | chr1_3:1479107-1479126 | Msa0096040:intron | 35.0% |
| TTATGATTAGAGACGGAGAT+AGG | - | chr1_3:1479340-1479359 | Msa0096040:intron | 35.0% | |
| TGGATAGAAAGAGTTTGGTT+TGG | - | chr1_3:1479674-1479693 | Msa0096040:intron | 35.0% | |
| !!! | AGTTTGGTTTGGTTGTGTTT+TGG | - | chr1_3:1479685-1479704 | Msa0096040:intron | 35.0% |
| !!! | GTTGTGTTTTGGTTACAGTT+TGG | - | chr1_3:1479696-1479715 | Msa0096040:intron | 35.0% |
| GATGCCAAATAACTCCAAAA+GGG | - | chr1_3:1479978-1479997 | Msa0096040:intron | 35.0% | |
| !! | GTGGCTTTTAGTTGTTATCT+TGG | + | chr1_3:1480020-1480039 | None:intergenic | 35.0% |
| !!! | TTGTCTTAGTTTTGTCTAGG+TGG | + | chr1_3:1480039-1480058 | None:intergenic | 35.0% |
| TACGCTGGAAAAGTTCAATT+TGG | + | chr1_3:1480123-1480142 | None:intergenic | 35.0% | |
| GTCTCTTTCTTTCTGATCTT+TGG | + | chr1_3:1480164-1480183 | None:intergenic | 35.0% | |
| GATGTTTCTTGCATTGTCTA+CGG | + | chr1_3:1480230-1480249 | None:intergenic | 35.0% | |
| !!! | AGGATTTTGAGATACAACCA+AGG | - | chr1_3:1480277-1480296 | Msa0096040:intron | 35.0% |
| GGTAATCCTTTCATGTATAG+TGG | + | chr1_3:1480352-1480371 | None:intergenic | 35.0% | |
| TGATTTAGAAATACAAGCCG+TGG | + | chr1_3:1480373-1480392 | None:intergenic | 35.0% | |
| GACATATTTGAGCTGATCTA+AGG | + | chr1_3:1480404-1480423 | None:intergenic | 35.0% | |
| ATCTTCGACTATTGCAATCT+CGG | + | chr1_3:1480488-1480507 | None:intergenic | 35.0% | |
| GCATATTATGCAGTGCAATA+TGG | + | chr1_3:1480692-1480711 | None:intergenic | 35.0% | |
| ! | ATTGATTCATAGTCTGAGGA+GGG | + | chr1_3:1480966-1480985 | None:intergenic | 35.0% |
| !! | TATTGATTCATAGTCTGAGG+AGG | + | chr1_3:1480967-1480986 | None:intergenic | 35.0% |
| !! | TTCACGTTTGAGACAGATTT+TGG | - | chr1_3:1481430-1481449 | Msa0096040:intron | 35.0% |
| TTCTCTCACCCTATCAAAAA+TGG | + | chr1_3:1481462-1481481 | None:intergenic | 35.0% | |
| TTTGATAGGGTGAGAGAATA+TGG | - | chr1_3:1481464-1481483 | Msa0096040:intron | 35.0% | |
| GAACAGAAACAATTCCAAGA+TGG | - | chr1_3:1481486-1481505 | Msa0096040:intron | 35.0% | |
| ! | AAAAAACAGGCTAAAGCGTT+TGG | + | chr1_3:1481588-1481607 | None:intergenic | 35.0% |
| !!! | AACGCTTTAGCCTGTTTTTT+TGG | - | chr1_3:1481588-1481607 | Msa0096040:intron | 35.0% |
| AATCTAGACGCCAAAAAAAC+AGG | + | chr1_3:1481601-1481620 | None:intergenic | 35.0% | |
| GTAGTAAATTGGAGCATAGA+AGG | + | chr1_3:1481654-1481673 | None:intergenic | 35.0% | |
| AAATAGAGTAACCTTGCGTA+AGG | + | chr1_3:1481692-1481711 | None:intergenic | 35.0% | |
| TGATTATTGCCATTACTCCT+AGG | + | chr1_3:1481730-1481749 | None:intergenic | 35.0% | |
| !! | TTCCTTTCAATGGGTTTTTC+AGG | - | chr1_3:1481806-1481825 | Msa0096040:intron | 35.0% |
| TACCTGAAAAACCCATTGAA+AGG | + | chr1_3:1481811-1481830 | None:intergenic | 35.0% | |
| !!! | GGGTTTTTCAGGTATTATTC+CGG | - | chr1_3:1481817-1481836 | Msa0096040:CDS | 35.0% |
| !!! | TTTTTCAGGTATTATTCCGG+CGG | - | chr1_3:1481820-1481839 | Msa0096040:CDS | 35.0% |
| TCGCATATTGTAGTTGCAAT+TGG | - | chr1_3:1481872-1481891 | Msa0096040:CDS | 35.0% | |
| TAACTAGAATACCAGAGAGA+TGG | - | chr1_3:1481945-1481964 | Msa0096040:CDS | 35.0% | |
| GACTAGTAAAATGCACATGT+GGG | + | chr1_3:1482091-1482110 | None:intergenic | 35.0% | |
| AGACTAGTAAAATGCACATG+TGG | + | chr1_3:1482092-1482111 | None:intergenic | 35.0% | |
| CATTACAACAATCCATTGGT+AGG | + | chr1_3:1482174-1482193 | None:intergenic | 35.0% | |
| ! | AGATTTTCCGGCGAATATGA+AGG | - | chr1_3:1476496-1476515 | Msa0096040:CDS | 40.0% |
| ! | GATTTTCCGGCGAATATGAA+GGG | - | chr1_3:1476497-1476516 | Msa0096040:CDS | 40.0% |
| TTCTTGTACAGTCATTTGGG+AGG | - | chr1_3:1476756-1476775 | Msa0096040:CDS | 40.0% | |
| !!! | GGTTTTGGGTTTGATTTTGG+GGG | - | chr1_3:1477004-1477023 | Msa0096040:CDS | 40.0% |
| !! | GTTTGATTTTGGGGGTTTGT+TGG | - | chr1_3:1477012-1477031 | Msa0096040:CDS | 40.0% |
| AAGACGGGAAAACAGATCAA+CGG | - | chr1_3:1477075-1477094 | Msa0096040:intron | 40.0% | |
| !! | GTGCATTTTGGTGGTTTATG+AGG | + | chr1_3:1478030-1478049 | None:intergenic | 40.0% |
| ! | TTGGAAAGTGTATTTGGCTC+GGG | - | chr1_3:1478594-1478613 | Msa0096040:intron | 40.0% |
| AAGGTAAGCTACGAAAACGT+TGG | - | chr1_3:1478617-1478636 | Msa0096040:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr1_3:1479000-1479019 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr1_3:1479001-1479020 | None:intergenic | 40.0% | |
| TTATATTAGTGACCGGAGGA+GGG | - | chr1_3:1479111-1479130 | Msa0096040:intron | 40.0% | |
| AACTATAATACACCCTCCTC+CGG | + | chr1_3:1479126-1479145 | None:intergenic | 40.0% | |
| TGTATGTTTGAATCCAGGTC+AGG | - | chr1_3:1479806-1479825 | Msa0096040:intron | 40.0% | |
| CTTCAAAAGAAAACCTGACC+TGG | + | chr1_3:1479822-1479841 | None:intergenic | 40.0% | |
| !! | GGTCAGGTTTTCTTTTGAAG+AGG | - | chr1_3:1479822-1479841 | Msa0096040:intron | 40.0% |
| GGTAAGATCAAAGATTGCAG+AGG | - | chr1_3:1479920-1479939 | Msa0096040:intron | 40.0% | |
| !!! | TGTTGTTTTTGGTGCTCAGA+GGG | + | chr1_3:1479953-1479972 | None:intergenic | 40.0% |
| !!! | TTGTTGTTTTTGGTGCTCAG+AGG | + | chr1_3:1479954-1479973 | None:intergenic | 40.0% |
| ! | TTTGGAGTTATTTGGCATCC+TGG | + | chr1_3:1479977-1479996 | None:intergenic | 40.0% |
| GGATGCCAAATAACTCCAAA+AGG | - | chr1_3:1479977-1479996 | Msa0096040:intron | 40.0% | |
| !! | ACTTTGGAGCTTTCACTCTT+TGG | + | chr1_3:1480073-1480092 | None:intergenic | 40.0% |
| TTTGTTCGTGATCAATACGC+TGG | + | chr1_3:1480138-1480157 | None:intergenic | 40.0% | |
| CAGAAAGAAAGAGACACCTT+AGG | - | chr1_3:1480169-1480188 | Msa0096040:intron | 40.0% | |
| ACTACTACTCCGAAACCAAA+CGG | - | chr1_3:1480251-1480270 | Msa0096040:intron | 40.0% | |
| ! | AATCCTAGTCCGTTTGGTTT+CGG | + | chr1_3:1480263-1480282 | None:intergenic | 40.0% |
| TCTCAAAATCCTAGTCCGTT+TGG | + | chr1_3:1480269-1480288 | None:intergenic | 40.0% | |
| GCGCTTTAGTTGTGTGTTAT+CGG | + | chr1_3:1480321-1480340 | None:intergenic | 40.0% | |
| TTGCAATCTCGGGAATCTAT+GGG | + | chr1_3:1480477-1480496 | None:intergenic | 40.0% | |
| ATTGCAATCTCGGGAATCTA+TGG | + | chr1_3:1480478-1480497 | None:intergenic | 40.0% | |
| TCTTCGACTATTGCAATCTC+GGG | + | chr1_3:1480487-1480506 | None:intergenic | 40.0% | |
| AAAGATTTCTTTGTCAGGGC+AGG | + | chr1_3:1480579-1480598 | None:intergenic | 40.0% | |
| TTGCATATATAGCAAGGTGC+TGG | + | chr1_3:1480647-1480666 | None:intergenic | 40.0% | |
| ! | GTTTTGTCTGTAACAGATGC+AGG | + | chr1_3:1480714-1480733 | None:intergenic | 40.0% |
| !! | TTCAAGTTGACAGCAAGAAG+AGG | + | chr1_3:1480781-1480800 | None:intergenic | 40.0% |
| TTGATTCATAGTCTGAGGAG+GGG | + | chr1_3:1480965-1480984 | None:intergenic | 40.0% | |
| GTCTGAAAAATCCGAAGTTG+CGG | + | chr1_3:1481003-1481022 | None:intergenic | 40.0% | |
| TTAAATCCTAGAGCGTGTCT+CGG | + | chr1_3:1481051-1481070 | None:intergenic | 40.0% | |
| AAACAATTCCAAGATGGCCA+TGG | - | chr1_3:1481492-1481511 | Msa0096040:intron | 40.0% | |
| AAAATGAACCATGGCCATCT+TGG | + | chr1_3:1481503-1481522 | None:intergenic | 40.0% | |
| ! | TGGCCATGGTTCATTTTCTT+AGG | - | chr1_3:1481506-1481525 | Msa0096040:intron | 40.0% |
| CCACCTAAGAAAATGAACCA+TGG | + | chr1_3:1481512-1481531 | None:intergenic | 40.0% | |
| ! | CCATGGTTCATTTTCTTAGG+TGG | - | chr1_3:1481509-1481528 | Msa0096040:intron | 40.0% |
| ! | TGGTTCATTTTCTTAGGTGG+AGG | - | chr1_3:1481512-1481531 | Msa0096040:intron | 40.0% |
| !! | GTGTTGCTTACTTTGCAGTT+CGG | - | chr1_3:1481538-1481557 | Msa0096040:intron | 40.0% |
| ! | TTTTGGCGTCTAGATTATGC+TGG | - | chr1_3:1481605-1481624 | Msa0096040:intron | 40.0% |
| ! | TTTTCTGCAATCCTTACGCA+AGG | - | chr1_3:1481678-1481697 | Msa0096040:CDS | 40.0% |
| TTGACATCAATATCGGTCCT+AGG | - | chr1_3:1481710-1481729 | Msa0096040:CDS | 40.0% | |
| AATATCGGTCCTAGGAGTAA+TGG | - | chr1_3:1481718-1481737 | Msa0096040:intron | 40.0% | |
| ! | TGAAAGTGATGGGGAAAGAA+GGG | + | chr1_3:1481753-1481772 | None:intergenic | 40.0% |
| ! | ATGAAAGTGATGGGGAAAGA+AGG | + | chr1_3:1481754-1481773 | None:intergenic | 40.0% |
| ATCGAGGTGATGAAAGTGAT+GGG | + | chr1_3:1481763-1481782 | None:intergenic | 40.0% | |
| AATCGAGGTGATGAAAGTGA+TGG | + | chr1_3:1481764-1481783 | None:intergenic | 40.0% | |
| TTCATGCTCTCGTAAGCAAT+TGG | - | chr1_3:1481843-1481862 | Msa0096040:CDS | 40.0% | |
| TCATGCTCTCGTAAGCAATT+GGG | - | chr1_3:1481844-1481863 | Msa0096040:CDS | 40.0% | |
| ATGGGCATTCTATATGCAAC+AGG | - | chr1_3:1481908-1481927 | Msa0096040:CDS | 40.0% | |
| AACAATCCATTGGTAGGGTT+TGG | + | chr1_3:1482168-1482187 | None:intergenic | 40.0% | |
| CCTGCATTACAACAATCCAT+TGG | + | chr1_3:1482178-1482197 | None:intergenic | 40.0% | |
| !! | CCAATGGATTGTTGTAATGC+AGG | - | chr1_3:1482175-1482194 | Msa0096040:five_prime_UTR | 40.0% |
| ! | AGGAATAAAGGTGCAAGCGA+CGG | - | chr1_3:1476419-1476438 | Msa0096040:CDS | 45.0% |
| TGGATTATTACCGGTCGGAA+TGG | - | chr1_3:1476600-1476619 | Msa0096040:CDS | 45.0% | |
| TTATTACCGGTCGGAATGGT+CGG | - | chr1_3:1476604-1476623 | Msa0096040:CDS | 45.0% | |
| ! | AGTCTTTCTAGCACAAGCCT+TGG | - | chr1_3:1477708-1477727 | Msa0096040:intron | 45.0% |
| ! | GATCACCTAGTGCATTTTGG+TGG | + | chr1_3:1478039-1478058 | None:intergenic | 45.0% |
| ! | TCGGATCACCTAGTGCATTT+TGG | + | chr1_3:1478042-1478061 | None:intergenic | 45.0% |
| TGCACTAGGTGATCCGATAA+AGG | - | chr1_3:1478045-1478064 | Msa0096040:intron | 45.0% | |
| CAATTGTGCACAGGAGATTG+TGG | + | chr1_3:1478171-1478190 | None:intergenic | 45.0% | |
| !! | AAAGTGTATTTGGCTCGGGA+AGG | - | chr1_3:1478598-1478617 | Msa0096040:intron | 45.0% |
| TTGGCCTATCCAGGATAAGT+GGG | - | chr1_3:1478636-1478655 | Msa0096040:intron | 45.0% | |
| GGAAGAACAGAGACTACATG+GGG | + | chr1_3:1478678-1478697 | None:intergenic | 45.0% | |
| GGGAAGAACAGAGACTACAT+GGG | + | chr1_3:1478679-1478698 | None:intergenic | 45.0% | |
| GTTATATTAGTGACCGGAGG+AGG | - | chr1_3:1479110-1479129 | Msa0096040:intron | 45.0% | |
| !!! | GTTGTTTTTGGTGCTCAGAG+GGG | + | chr1_3:1479952-1479971 | None:intergenic | 45.0% |
| GAGCACCAAAAACAACAACC+AGG | - | chr1_3:1479956-1479975 | Msa0096040:intron | 45.0% | |
| !!! | GGCATCCTGGTTGTTGTTTT+TGG | + | chr1_3:1479964-1479983 | None:intergenic | 45.0% |
| ! | TGGCTTGGAGTAAGATCCTA+AGG | + | chr1_3:1480188-1480207 | None:intergenic | 45.0% |
| GTCTTCCAGTAACTCGTTAG+TGG | + | chr1_3:1480208-1480227 | None:intergenic | 45.0% | |
| !!! | TCGCGTTTTGAGAGATTCCT+TGG | + | chr1_3:1480297-1480316 | None:intergenic | 45.0% |
| GAGTGGAATTATTGGCAGCA+AGG | + | chr1_3:1480441-1480460 | None:intergenic | 45.0% | |
| TGCCAATAATTCCACTCTCG+AGG | - | chr1_3:1480444-1480463 | Msa0096040:intron | 45.0% | |
| AGCCTCGAGAGTGGAATTAT+TGG | + | chr1_3:1480449-1480468 | None:intergenic | 45.0% | |
| TGCAATCTCGGGAATCTATG+GGG | + | chr1_3:1480476-1480495 | None:intergenic | 45.0% | |
| AAGTTGACAGCAAGAAGAGG+AGG | + | chr1_3:1480778-1480797 | None:intergenic | 45.0% | |
| !! | TGCTTTTGGTTGGAAGCAGA+GGG | + | chr1_3:1480858-1480877 | None:intergenic | 45.0% |
| TGATTCATAGTCTGAGGAGG+GGG | + | chr1_3:1480964-1480983 | None:intergenic | 45.0% | |
| CACGTTTGATCAACTTGACC+CGG | + | chr1_3:1481122-1481141 | None:intergenic | 45.0% | |
| !! | GGTCAAGTTGATCAAACGTG+CGG | - | chr1_3:1481122-1481141 | Msa0096040:intron | 45.0% |
| TCGAGGTGATGAAAGTGATG+GGG | + | chr1_3:1481762-1481781 | None:intergenic | 45.0% | |
| !! | GCTCTAAAGGTTCGAAATCG+AGG | + | chr1_3:1481779-1481798 | None:intergenic | 45.0% |
| CATGCTCTCGTAAGCAATTG+GGG | - | chr1_3:1481845-1481864 | Msa0096040:CDS | 45.0% | |
| CCTGCAATATCAAATGCTCC+AGG | + | chr1_3:1481974-1481993 | None:intergenic | 45.0% | |
| ! | CCTGGAGCATTTGATATTGC+AGG | - | chr1_3:1481971-1481990 | Msa0096040:exon | 45.0% |
| ! | GATTATGACAAGTGTCGCAG+TGG | + | chr1_3:1482050-1482069 | None:intergenic | 45.0% |
| TAGCAACCAAACCCTACCAA+TGG | - | chr1_3:1482159-1482178 | Msa0096040:five_prime_UTR | 45.0% | |
| !!! | TTTACTAATTAAAATTATTT+TGG | - | chr1_3:1481336-1481355 | Msa0096040:intron | 5.0% |
| ! | GGAATAAAGGTGCAAGCGAC+GGG | - | chr1_3:1476420-1476439 | Msa0096040:CDS | 50.0% |
| GTTGCGATTGGTGAAGTACG+AGG | - | chr1_3:1476541-1476560 | Msa0096040:CDS | 50.0% | |
| GGTGAAGTACGAGGAATTGC+CGG | - | chr1_3:1476550-1476569 | Msa0096040:CDS | 50.0% | |
| ! | CTTTGTTCAGCGTTTTCGCG+TGG | - | chr1_3:1476636-1476655 | Msa0096040:CDS | 50.0% |
| !! | TTTGGGGGTTTGTTGGTGTG+TGG | - | chr1_3:1477019-1477038 | Msa0096040:CDS | 50.0% |
| !! | GGTTTGTTGGTGTGTGGTGT+GGG | - | chr1_3:1477025-1477044 | Msa0096040:CDS | 50.0% |
| ! | ACGAAAACGTTGGCCTATCC+AGG | - | chr1_3:1478627-1478646 | Msa0096040:intron | 50.0% |
| ! | GTTGGCCTATCCAGGATAAG+TGG | - | chr1_3:1478635-1478654 | Msa0096040:intron | 50.0% |
| CTGACCCACTTATCCTGGAT+AGG | + | chr1_3:1478643-1478662 | None:intergenic | 50.0% | |
| CTAAGCTGACCCACTTATCC+TGG | + | chr1_3:1478648-1478667 | None:intergenic | 50.0% | |
| CAGAGACTACATGGGGAGAT+GGG | + | chr1_3:1478671-1478690 | None:intergenic | 50.0% | |
| ACAGAGACTACATGGGGAGA+TGG | + | chr1_3:1478672-1478691 | None:intergenic | 50.0% | |
| CGGGAAGAACAGAGACTACA+TGG | + | chr1_3:1478680-1478699 | None:intergenic | 50.0% | |
| CCAGTAACTCGTTAGTGGCT+TGG | + | chr1_3:1480203-1480222 | None:intergenic | 50.0% | |
| CCAAGCCACTAACGAGTTAC+TGG | - | chr1_3:1480200-1480219 | Msa0096040:intron | 50.0% | |
| ! | ACTCCGAAACCAAACGGACT+AGG | - | chr1_3:1480257-1480276 | Msa0096040:intron | 50.0% |
| !! | CAGCAAGGTGCATTGATTCG+AGG | + | chr1_3:1480426-1480445 | None:intergenic | 50.0% |
| !! | CAAGGTGCTGGCAGCAATAT+TGG | + | chr1_3:1480635-1480654 | None:intergenic | 50.0% |
| ACAGCAAGAAGAGGAGGCTT+TGG | + | chr1_3:1480772-1480791 | None:intergenic | 50.0% | |
| !! | GTGCTTTTGGTTGGAAGCAG+AGG | + | chr1_3:1480859-1480878 | None:intergenic | 50.0% |
| ! | TAGGGTCTGGTGCTTTTGGT+TGG | + | chr1_3:1480868-1480887 | None:intergenic | 50.0% |
| ! | CTCATAGGGTCTGGTGCTTT+TGG | + | chr1_3:1480872-1480891 | None:intergenic | 50.0% |
| GTAGAGGGGACGTTCTCATA+GGG | + | chr1_3:1480886-1480905 | None:intergenic | 50.0% | |
| TGTAGAGGGGACGTTCTCAT+AGG | + | chr1_3:1480887-1480906 | None:intergenic | 50.0% | |
| AATCCGAAGTTGCGGCAGTT+TGG | + | chr1_3:1480995-1481014 | None:intergenic | 50.0% | |
| ATGTTACCGAGACACGCTCT+AGG | - | chr1_3:1481042-1481061 | Msa0096040:intron | 50.0% | |
| AAACGTGCGGTAGAAAGCCA+CGG | - | chr1_3:1481135-1481154 | Msa0096040:intron | 50.0% | |
| AAAGCCACGGAAACGTCATG+CGG | - | chr1_3:1481148-1481167 | Msa0096040:intron | 50.0% | |
| GGAGTGGCAAGCAAGAAGAT+GGG | + | chr1_3:1481567-1481586 | None:intergenic | 50.0% | |
| TGGAGTGGCAAGCAAGAAGA+TGG | + | chr1_3:1481568-1481587 | None:intergenic | 50.0% | |
| ! | ACAGGCTAAAGCGTTTGGAG+TGG | + | chr1_3:1481583-1481602 | None:intergenic | 50.0% |
| ATACCAGAGAGATGGAAGCC+TGG | - | chr1_3:1481953-1481972 | Msa0096040:CDS | 50.0% | |
| GCGGAAGAGAACGTTGCGAT+TGG | - | chr1_3:1476529-1476548 | Msa0096040:CDS | 55.0% | |
| CCTTAACCGACCATTCCGAC+CGG | + | chr1_3:1476613-1476632 | None:intergenic | 55.0% | |
| ACGGGGCAAGTTAGCATGAC+CGG | - | chr1_3:1476965-1476984 | Msa0096040:CDS | 55.0% | |
| !! | GGGTTTGTTGGTGTGTGGTG+TGG | - | chr1_3:1477024-1477043 | Msa0096040:CDS | 55.0% |
| TGTGGTGTGGGAGCAGAGTT+GGG | - | chr1_3:1477037-1477056 | Msa0096040:CDS | 55.0% | |
| !! | GGTGCTGGCAGCAATATTGG+TGG | + | chr1_3:1480632-1480651 | None:intergenic | 55.0% |
| !! | TGCTGCTGGCTGTGCTGTTT+CGG | + | chr1_3:1480919-1480938 | None:intergenic | 55.0% |
| TGGTGCTTTCTTGCTGCTGC+TGG | + | chr1_3:1480933-1480952 | None:intergenic | 55.0% | |
| CTGCCAAACTGCCGCAACTT+CGG | - | chr1_3:1480989-1481008 | Msa0096040:intron | 55.0% | |
| GAAACCGCATGACGTTTCCG+TGG | + | chr1_3:1481155-1481174 | None:intergenic | 55.0% | |
| ! | CTTACGAGAGCATGAACCGC+CGG | + | chr1_3:1481839-1481858 | None:intergenic | 55.0% |
| CCGGTCGGAATGGTCGGTTA+AGG | - | chr1_3:1476610-1476629 | Msa0096040:CDS | 60.0% | |
| ! | ATTTGCAGCGATGGCGGCGA+CGG | - | chr1_3:1476788-1476807 | Msa0096040:CDS | 60.0% |
| GTGTGGTGTGGGAGCAGAGT+TGG | - | chr1_3:1477036-1477055 | Msa0096040:CDS | 60.0% | |
| GTGGTGTGGGAGCAGAGTTG+GGG | - | chr1_3:1477038-1477057 | Msa0096040:CDS | 60.0% | |
| ! | TGGGGCTTTAGCCTCGAGAG+TGG | + | chr1_3:1480458-1480477 | None:intergenic | 60.0% |
| GGGGACGTTCTCATAGGGTC+TGG | + | chr1_3:1480881-1480900 | None:intergenic | 60.0% | |
| GAGAACGTCCCCTCTACAGC+AGG | - | chr1_3:1480889-1480908 | Msa0096040:intron | 60.0% | |
| TTCGGTCGGCCTGCTGTAGA+GGG | + | chr1_3:1480901-1480920 | None:intergenic | 60.0% | |
| TTTCGGTCGGCCTGCTGTAG+AGG | + | chr1_3:1480902-1480921 | None:intergenic | 60.0% | |
| !! | GCTGGCTGTGCTGTTTCGGT+CGG | + | chr1_3:1480915-1480934 | None:intergenic | 60.0% |
| GCTCCAGGCTTCCATCTCTC+TGG | + | chr1_3:1481959-1481978 | None:intergenic | 60.0% | |
| TGGCATGTGCAAGTGCCCCA+AGG | + | chr1_3:1482030-1482049 | None:intergenic | 60.0% | |
| ACGGAAGCTGGAGGAGGAGG+AGG | - | chr1_3:1476807-1476826 | Msa0096040:CDS | 65.0% | |
| GAAGCTGGAGGAGGAGGAGG+TGG | - | chr1_3:1476810-1476829 | Msa0096040:CDS | 65.0% | |
| TGGGAGCAGAGTTGGGGCGA+CGG | - | chr1_3:1477044-1477063 | Msa0096040:CDS | 65.0% | |
| GGCGACGGGGTCGTTGAAGA+CGG | - | chr1_3:1477059-1477078 | Msa0096040:intron | 65.0% | |
| GCGACGGGGTCGTTGAAGAC+GGG | - | chr1_3:1477060-1477079 | Msa0096040:intron | 65.0% | |
| TCGGTCGGCCTGCTGTAGAG+GGG | + | chr1_3:1480900-1480919 | None:intergenic | 65.0% | |
| CTGAGGAGGGGGTCTGTCTG+TGG | + | chr1_3:1480953-1480972 | None:intergenic | 65.0% | |
| ATGGCGGCGACGGAAGCTGG+AGG | - | chr1_3:1476798-1476817 | Msa0096040:CDS | 70.0% | |
| GCGACGGAAGCTGGAGGAGG+AGG | - | chr1_3:1476804-1476823 | Msa0096040:CDS | 70.0% | |
| GGGAGCAGAGTTGGGGCGAC+GGG | - | chr1_3:1477045-1477064 | Msa0096040:CDS | 70.0% | |
| GGAGCAGAGTTGGGGCGACG+GGG | - | chr1_3:1477046-1477065 | Msa0096040:CDS | 70.0% | |
| ! | GCGATGGCGGCGACGGAAGC+TGG | - | chr1_3:1476795-1476814 | Msa0096040:CDS | 75.0% |
| GCGGCGACGGAAGCTGGAGG+AGG | - | chr1_3:1476801-1476820 | Msa0096040:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 1476261 | 1482238 | 1476261 | ID=Msa0096040;Name=Msa0096040 |
| chr1_3 | mRNA | 1476261 | 1482238 | 1476261 | ID=Msa0096040-mRNA-1;Parent=Msa0096040;Name=Msa0096040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=251|1|1|1|0.66|0.75|4|130|339 |
| chr1_3 | exon | 1476261 | 1477077 | 1476261 | ID=Msa0096040-mRNA-1:exon:312;Parent=Msa0096040-mRNA-1 |
| chr1_3 | exon | 1481374 | 1481446 | 1481374 | ID=Msa0096040-mRNA-1:exon:311;Parent=Msa0096040-mRNA-1 |
| chr1_3 | exon | 1481646 | 1481732 | 1481646 | ID=Msa0096040-mRNA-1:exon:310;Parent=Msa0096040-mRNA-1 |
| chr1_3 | exon | 1481815 | 1482238 | 1481815 | ID=Msa0096040-mRNA-1:exon:309;Parent=Msa0096040-mRNA-1 |
| chr1_3 | five_prime_UTR | 1481988 | 1482238 | 1481988 | ID=Msa0096040-mRNA-1:five_prime_utr;Parent=Msa0096040-mRNA-1 |
| chr1_3 | CDS | 1481815 | 1481987 | 1481815 | ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1 |
| chr1_3 | CDS | 1481646 | 1481732 | 1481646 | ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1 |
| chr1_3 | CDS | 1481374 | 1481446 | 1481374 | ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1 |
| chr1_3 | CDS | 1476391 | 1477077 | 1476391 | ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1 |
| chr1_3 | three_prime_UTR | 1476261 | 1476390 | 1476261 | ID=Msa0096040-mRNA-1:three_prime_utr;Parent=Msa0096040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
