AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096040 MtrunA17_Chr2g0305481 97.050 339 9 1 1 339 1 338 0.0 669
Msa0096040 MtrunA17_Chr4g0064481 49.085 328 158 3 4 330 38 357 3.24e-108 320
Msa0096040 MtrunA17_Chr5g0401021 42.458 358 161 4 7 330 28 374 2.46e-90 275
Msa0096040 MtrunA17_Chr3g0134921 42.500 360 171 5 7 330 32 391 9.39e-88 269
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096040 AT4G30850.2 57.593 349 128 5 1 338 19 358 2.73e-143 409
Msa0096040 AT4G30850.1 57.593 349 128 5 1 338 19 358 2.73e-143 409
Msa0096040 AT2G24150.1 56.575 327 127 4 12 338 33 344 6.62e-131 377
Msa0096040 AT2G24150.2 67.157 204 67 0 135 338 52 255 1.01e-102 302
Msa0096040 AT5G20270.1 46.505 329 130 1 2 330 45 327 1.06e-102 305
Msa0096040 AT4G37680.1 43.296 358 174 5 2 330 23 380 1.18e-91 279
Msa0096040 AT4G37680.5 43.296 358 174 5 2 330 23 380 1.18e-91 279
Msa0096040 AT4G37680.2 43.296 358 174 5 2 330 23 380 1.18e-91 279
Msa0096040 AT4G37680.3 43.296 358 174 5 2 330 28 385 1.78e-91 278
Msa0096040 AT4G37680.4 43.296 358 174 5 2 330 28 385 1.78e-91 278
Msa0096040 AT4G38320.1 43.466 352 170 5 2 324 23 374 4.47e-89 272
Msa0096040 AT2G40710.1 54.545 88 40 0 243 330 1 88 3.04e-27 103
Msa0096040 AT4G38290.1 64.516 62 22 0 269 330 42 103 6.28e-22 89.7

Find 91 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGTTTGAGACAGATTT+TGG 0.180770 1_3:-1477047 Msa0096040:CDS
TTTGATAGGGTGAGAGAATA+TGG 0.256564 1_3:-1477013 Msa0096040:CDS
AATTGGATATGAGCTCTTAA+TGG 0.270809 1_3:-1476588 Msa0096040:CDS
GTTGTTCTTGTACAGTCATT+TGG 0.300362 1_3:-1481725 Msa0096040:intron
AGCATCTTTATTCCTTTCAA+TGG 0.327223 1_3:-1476681 Msa0096040:CDS
TTGTTCTTGTACAGTCATTT+GGG 0.334474 1_3:-1481724 Msa0096040:intron
AAAAGACAACGAGTTCATAT+TGG 0.344022 1_3:-1481897 Msa0096040:CDS
GCGATGGCGGCGACGGAAGC+TGG 0.345791 1_3:-1481682 Msa0096040:CDS
AACAATCCATTGGTAGGGTT+TGG 0.348659 1_3:+1476312 None:intergenic
TTCATGCTCTCGTAAGCAAT+TGG 0.354615 1_3:-1476634 Msa0096040:CDS
ACTCTATTTGACATCAATAT+CGG 0.361427 1_3:-1476774 Msa0096040:CDS
ATTTATTTAGATTAGATGAT+TGG 0.363801 1_3:+1482211 None:intergenic
TGACTATGTTTGTTCGTTGT+TGG 0.367410 1_3:-1482119 Msa0096040:five_prime_UTR
GGGAGCAGAGTTGGGGCGAC+GGG 0.368194 1_3:-1481432 Msa0096040:intron
CCTGGAGCATTTGATATTGC+AGG 0.369519 1_3:-1476506 Msa0096040:CDS
AGTTCATATTGGATTATTAC+CGG 0.383152 1_3:-1481886 Msa0096040:CDS
AAACGAAAACGAAGGAATAA+AGG 0.390532 1_3:-1482070 Msa0096040:five_prime_UTR
GACTATGTTTGTTCGTTGTT+GGG 0.392950 1_3:-1482118 Msa0096040:five_prime_UTR
TCGCATATTGTAGTTGCAAT+TGG 0.397993 1_3:-1476605 Msa0096040:CDS
AAAATGAACCATGGCCATCT+TGG 0.399515 1_3:+1476977 None:intergenic
TCATGCTCTCGTAAGCAATT+GGG 0.408002 1_3:-1476633 Msa0096040:CDS
GCGACGGAAGCTGGAGGAGG+AGG 0.408012 1_3:-1481673 Msa0096040:CDS
ACAACGAAACGCTAAATGTT+TGG 0.429326 1_3:-1481817 Msa0096040:CDS
ATTGGATATGAGCTCTTAAT+GGG 0.433906 1_3:-1476587 Msa0096040:CDS
ACGGAAGCTGGAGGAGGAGG+AGG 0.442291 1_3:-1481670 Msa0096040:CDS
GGTGAAGTACGAGGAATTGC+CGG 0.443305 1_3:-1481927 Msa0096040:CDS
TGGGAGCAGAGTTGGGGCGA+CGG 0.450948 1_3:-1481433 Msa0096040:intron
AGATTAGATGATTGGTTTCG+TGG 0.457726 1_3:+1482219 None:intergenic
GGAATAAAGGTGCAAGCGAC+GGG 0.459408 1_3:-1482057 Msa0096040:five_prime_UTR
ATGGGCATTCTATATGCAAC+AGG 0.462499 1_3:-1476569 Msa0096040:CDS
GCATCTTTATTCCTTTCAAT+GGG 0.465831 1_3:-1476680 Msa0096040:CDS
CGAATATGAAGGGTAATTAT+CGG 0.467352 1_3:-1481970 Msa0096040:exon
GTAGTAAATTGGAGCATAGA+AGG 0.468904 1_3:+1476826 None:intergenic
TGGAGTGGCAAGCAAGAAGA+TGG 0.469300 1_3:+1476912 None:intergenic
CCGGTCGGAATGGTCGGTTA+AGG 0.472175 1_3:-1481867 Msa0096040:CDS
GTGTTGCTTACTTTGCAGTT+CGG 0.481770 1_3:-1476939 Msa0096040:CDS
TGATTATTGCCATTACTCCT+AGG 0.484435 1_3:+1476750 None:intergenic
GCGGCGACGGAAGCTGGAGG+AGG 0.486075 1_3:-1481676 Msa0096040:CDS
CATTACAACAATCCATTGGT+AGG 0.487060 1_3:+1476306 None:intergenic
ATGAAAGTGATGGGGAAAGA+AGG 0.490228 1_3:+1476726 None:intergenic
TTTAATATTTGCAGCGATGG+CGG 0.490595 1_3:-1481695 Msa0096040:CDS
TGGATTATTACCGGTCGGAA+TGG 0.492532 1_3:-1481877 Msa0096040:CDS
AAGGAATAAAGATGCTCTAA+AGG 0.495018 1_3:+1476688 None:intergenic
GAAGCTGGAGGAGGAGGAGG+TGG 0.496794 1_3:-1481667 Msa0096040:CDS
GCGACGGGGTCGTTGAAGAC+GGG 0.498294 1_3:-1481417 Msa0096040:CDS
AGGAATAAAGGTGCAAGCGA+CGG 0.501490 1_3:-1482058 Msa0096040:five_prime_UTR
GCTCCAGGCTTCCATCTCTC+TGG 0.506779 1_3:+1476521 None:intergenic
TTATTACCGGTCGGAATGGT+CGG 0.518312 1_3:-1481873 Msa0096040:CDS
TTGACATCAATATCGGTCCT+AGG 0.520515 1_3:-1476767 Msa0096040:CDS
ATACCAGAGAGATGGAAGCC+TGG 0.520590 1_3:-1476524 Msa0096040:CDS
CGAACAAACATAGTCATATG+AGG 0.522377 1_3:+1482126 None:intergenic
ATTTGCAGCGATGGCGGCGA+CGG 0.523006 1_3:-1481689 Msa0096040:CDS
GGCGACGGGGTCGTTGAAGA+CGG 0.536340 1_3:-1481418 Msa0096040:CDS
CCAATGGATTGTTGTAATGC+AGG 0.537390 1_3:-1476302 Msa0096040:three_prime_UTR
GATAGTATAAATTTAATCGC+CGG 0.538820 1_3:-1482020 Msa0096040:five_prime_UTR
ATCGAGGTGATGAAAGTGAT+GGG 0.541396 1_3:+1476717 None:intergenic
TAATTACCCTTCATATTCGC+CGG 0.541667 1_3:+1481974 None:intergenic
AATATCGGTCCTAGGAGTAA+TGG 0.546762 1_3:-1476759 Msa0096040:CDS
GCGGAAGAGAACGTTGCGAT+TGG 0.550524 1_3:-1481948 Msa0096040:CDS
ATTACAACAATCCATTGGTA+GGG 0.555645 1_3:+1476307 None:intergenic
AAATAGAGTAACCTTGCGTA+AGG 0.563549 1_3:+1476788 None:intergenic
CATGCTCTCGTAAGCAATTG+GGG 0.565438 1_3:-1476632 Msa0096040:CDS
AGACTAGTAAAATGCACATG+TGG 0.568074 1_3:+1476388 None:intergenic
TGTTGGGTATAAATAGAGAA+AGG 0.573206 1_3:-1482102 Msa0096040:five_prime_UTR
TTCTTGTACAGTCATTTGGG+AGG 0.573521 1_3:-1481721 Msa0096040:intron
TAACTAGAATACCAGAGAGA+TGG 0.576093 1_3:-1476532 Msa0096040:CDS
CCTGCAATATCAAATGCTCC+AGG 0.579712 1_3:+1476506 None:intergenic
AATCGAGGTGATGAAAGTGA+TGG 0.582826 1_3:+1476716 None:intergenic
TGAAAGTGATGGGGAAAGAA+GGG 0.590589 1_3:+1476727 None:intergenic
GCTCTAAAGGTTCGAAATCG+AGG 0.591484 1_3:+1476701 None:intergenic
CATATTGGATTATTACCGGT+CGG 0.594477 1_3:-1481882 Msa0096040:CDS
GAACAGAAACAATTCCAAGA+TGG 0.595445 1_3:-1476991 Msa0096040:CDS
TAGCAACCAAACCCTACCAA+TGG 0.597356 1_3:-1476318 Msa0096040:three_prime_UTR
GACTAGTAAAATGCACATGT+GGG 0.615594 1_3:+1476389 None:intergenic
CCTGCATTACAACAATCCAT+TGG 0.622470 1_3:+1476302 None:intergenic
AAACAATTCCAAGATGGCCA+TGG 0.626037 1_3:-1476985 Msa0096040:CDS
GGAGTGGCAAGCAAGAAGAT+GGG 0.628166 1_3:+1476913 None:intergenic
TGGCATGTGCAAGTGCCCCA+AGG 0.634193 1_3:+1476450 None:intergenic
ATGGCGGCGACGGAAGCTGG+AGG 0.636720 1_3:-1481679 Msa0096040:CDS
CTTACGAGAGCATGAACCGC+CGG 0.643670 1_3:+1476641 None:intergenic
GTGGTGTGGGAGCAGAGTTG+GGG 0.644548 1_3:-1481439 Msa0096040:intron
GGAGCAGAGTTGGGGCGACG+GGG 0.647379 1_3:-1481431 Msa0096040:intron
TCGAGGTGATGAAAGTGATG+GGG 0.648692 1_3:+1476718 None:intergenic
ACAGGCTAAAGCGTTTGGAG+TGG 0.658549 1_3:+1476897 None:intergenic
CCTTAACCGACCATTCCGAC+CGG 0.662396 1_3:+1481867 None:intergenic
GATTATGACAAGTGTCGCAG+TGG 0.674182 1_3:+1476430 None:intergenic
AAGACGGGAAAACAGATCAA+CGG 0.676522 1_3:-1481402 Msa0096040:CDS
GTTGCGATTGGTGAAGTACG+AGG 0.684760 1_3:-1481936 Msa0096040:CDS
CCACCTAAGAAAATGAACCA+TGG 0.695018 1_3:+1476968 None:intergenic
ATATGAAGGGTAATTATCGG+CGG 0.702822 1_3:-1481967 Msa0096040:CDS
GAGTAACAAAACGAAAACGA+AGG 0.703111 1_3:-1482078 Msa0096040:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGGAATTTTAAAATA+TGG + chr1_3:1476298-1476317 None:intergenic 10.0%
!! ATTATTTGGAAAAAAAAAAA+AGG + chr1_3:1477952-1477971 None:intergenic 10.0%
!! TATAGTTCTTATAAAATTTA+AGG - chr1_3:1478230-1478249 Msa0096040:intron 10.0%
!!! TAAAAGTTTATAATTTTGTA+GGG + chr1_3:1478344-1478363 None:intergenic 10.0%
!!! TTAAAAGTTTATAATTTTGT+AGG + chr1_3:1478345-1478364 None:intergenic 10.0%
!! AAAAGTGAATAAATTTATTT+AGG + chr1_3:1478376-1478395 None:intergenic 10.0%
!!! ACAATTTTTTTTTTTCAAAA+GGG - chr1_3:1479315-1479334 Msa0096040:intron 10.0%
!!! TAACTTTTTTTTTTTTTTTG+AGG + chr1_3:1479507-1479526 None:intergenic 10.0%
!!! TTAAAATTATTTTGGAATTT+TGG - chr1_3:1481344-1481363 Msa0096040:intron 10.0%
!! ATTTATTTAGATTAGATGAT+TGG + chr1_3:1476269-1476288 None:intergenic 15.0%
!!! CTTTTCTTTTCTTTTTTTAT+TGG + chr1_3:1476313-1476332 None:intergenic 15.0%
!! AAAAAAAGAAAAGAAAAGAA+TGG - chr1_3:1476315-1476334 Msa0096040:three_prime_UTR 15.0%
!! ATTTAATGTCAAAAATAAGA+AGG + chr1_3:1476884-1476903 None:intergenic 15.0%
!!! TCATCAAAATTTTATCAATT+AGG + chr1_3:1477432-1477451 None:intergenic 15.0%
!!! AATAATTACACTAATTTTGT+AGG + chr1_3:1478274-1478293 None:intergenic 15.0%
!! CAAAATTAGTGTAATTATTA+TGG - chr1_3:1478275-1478294 Msa0096040:intron 15.0%
!!! ACATAAGTTTATTATAGTTT+TGG - chr1_3:1478575-1478594 Msa0096040:intron 15.0%
!!! TTTTTATTGGTCAAAAATAA+TGG + chr1_3:1478902-1478921 None:intergenic 15.0%
!!! TTGTTTTTCTATCTTTTTAT+TGG + chr1_3:1478915-1478934 None:intergenic 15.0%
!!! GACAATTTTTTTTTTTCAAA+AGG - chr1_3:1479314-1479333 Msa0096040:intron 15.0%
!!! TTTTTTTTTTTTTTGAGGAA+AGG + chr1_3:1479502-1479521 None:intergenic 15.0%
!! AAAAAAAAAAAAGAATCTAC+TGG - chr1_3:1479625-1479644 Msa0096040:intron 15.0%
!!! TTTTCCATTAAAATAAAACA+TGG - chr1_3:1479654-1479673 Msa0096040:intron 15.0%
!!! CTTTTTTTACTTTTTTACTT+TGG + chr1_3:1480089-1480108 None:intergenic 15.0%
!!! TATTTGATTTTATATGAATC+CGG - chr1_3:1481100-1481119 Msa0096040:intron 15.0%
!!! ATAAACAGAAACATTTTTTA+GGG + chr1_3:1481219-1481238 None:intergenic 15.0%
!!! AATAAACAGAAACATTTTTT+AGG + chr1_3:1481220-1481239 None:intergenic 15.0%
!!! TTTTTTCTGAGCTTTTTTAA+CGG - chr1_3:1476946-1476965 Msa0096040:CDS 20.0%
!!! AATAATTTTAAGGATGGTTT+TGG - chr1_3:1476989-1477008 Msa0096040:CDS 20.0%
!!! ATAATTTTAAGGATGGTTTT+GGG - chr1_3:1476990-1477009 Msa0096040:CDS 20.0%
!! AGAAATTTATAGTTTCGTAT+TGG - chr1_3:1477164-1477183 Msa0096040:intron 20.0%
!! TTGAAATATTAAAAGAGTCA+TGG + chr1_3:1477337-1477356 None:intergenic 20.0%
!! TGAAATAAGTAATAATGTAG+AGG - chr1_3:1477579-1477598 Msa0096040:intron 20.0%
!! AGATAACTAAATAATATTCG+AGG - chr1_3:1477981-1478000 Msa0096040:intron 20.0%
!! GCAAAAAAGTCATATAAAAA+TGG - chr1_3:1479292-1479311 Msa0096040:intron 20.0%
!!! AACAAGTTTTCATCAAAAAA+TGG + chr1_3:1479390-1479409 None:intergenic 20.0%
!! CATAATAGAATAGAATCTAT+TGG - chr1_3:1479587-1479606 Msa0096040:intron 20.0%
!!! CTATCCATGTTTTATTTTAA+TGG + chr1_3:1479661-1479680 None:intergenic 20.0%
!!! AATAAATGTTTCTTTTTTCG+AGG - chr1_3:1479776-1479795 Msa0096040:intron 20.0%
!! TATAAGAATGTCAAAATACT+GGG - chr1_3:1479899-1479918 Msa0096040:intron 20.0%
!!! AAGAAATCTTTTCTCAATTA+AGG - chr1_3:1480588-1480607 Msa0096040:intron 20.0%
!!! TTTAGCAGTTCTAATATTAT+TGG + chr1_3:1480748-1480767 None:intergenic 20.0%
!!! ATTTGATTTTATATGAATCC+GGG - chr1_3:1481101-1481120 Msa0096040:intron 20.0%
!! CATTTATTAAGCATCTATTT+AGG + chr1_3:1481185-1481204 None:intergenic 20.0%
!! AAACTAAACAAATGATTGAT+TGG + chr1_3:1481405-1481424 None:intergenic 20.0%
! GATAGTATAAATTTAATCGC+CGG - chr1_3:1476457-1476476 Msa0096040:CDS 25.0%
!!! TCTTTTCTTTTTTCGTTTTC+CGG + chr1_3:1476479-1476498 None:intergenic 25.0%
!! CGAAAAAAGAAAAGATTTTC+CGG - chr1_3:1476484-1476503 Msa0096040:CDS 25.0%
! AGTTCATATTGGATTATTAC+CGG - chr1_3:1476591-1476610 Msa0096040:CDS 25.0%
!!! TTTTTCTGAGCTTTTTTAAC+GGG - chr1_3:1476947-1476966 Msa0096040:CDS 25.0%
! ACCATCCTTAAAATTATTAC+CGG + chr1_3:1476987-1477006 None:intergenic 25.0%
! TACAAAGTTAGAGACTAATT+TGG + chr1_3:1477296-1477315 None:intergenic 25.0%
! TAAGAATAGATTACAACGAT+AGG - chr1_3:1477475-1477494 Msa0096040:intron 25.0%
! AATTGAGTAAACCATGAAAT+TGG + chr1_3:1477503-1477522 None:intergenic 25.0%
!!! TCGTTATCCATTTTTCTTAA+CGG - chr1_3:1477654-1477673 Msa0096040:intron 25.0%
!!! ATTTTGACCGTTAAGAAAAA+TGG + chr1_3:1477664-1477683 None:intergenic 25.0%
!!! TTTGTTTTCCTTGTTTATGT+TGG + chr1_3:1477776-1477795 None:intergenic 25.0%
!! AAATCAAGTTGCAATCTTAT+TGG + chr1_3:1477877-1477896 None:intergenic 25.0%
!!! CATACATACTTTTGAGTATA+AGG + chr1_3:1477927-1477946 None:intergenic 25.0%
! TATCTTGTGTGTAGATTATT+TGG + chr1_3:1477966-1477985 None:intergenic 25.0%
!!! GATCACTTATTTGCTAATTT+TGG + chr1_3:1478129-1478148 None:intergenic 25.0%
!! TTTTAACAGTCGAAAAGTTT+AGG - chr1_3:1478300-1478319 Msa0096040:intron 25.0%
! TCTTTCAAACTACAATATCA+TGG - chr1_3:1478492-1478511 Msa0096040:intron 25.0%
!!! ATAGTTTTGGAAAGTGTATT+TGG - chr1_3:1478588-1478607 Msa0096040:intron 25.0%
!!! ACTTTTGTTATATTAGTGAC+CGG - chr1_3:1479104-1479123 Msa0096040:intron 25.0%
! AAAGAAGTAATTAATGCACT+TGG - chr1_3:1479264-1479283 Msa0096040:intron 25.0%
!!! TAAAGAGTGTTTAAGTGTTT+TGG + chr1_3:1479429-1479448 None:intergenic 25.0%
! TCGTGTTGTCAATTTATTAA+AGG + chr1_3:1479459-1479478 None:intergenic 25.0%
! AGTAATTCTAACTTCTTATC+TGG + chr1_3:1479539-1479558 None:intergenic 25.0%
! CTATAAGAATGTCAAAATAC+TGG - chr1_3:1479898-1479917 Msa0096040:intron 25.0%
!!! TTGTTTTAAGAAGCTAAATG+TGG + chr1_3:1480819-1480838 None:intergenic 25.0%
! TTCTCTCACTATATCAATAA+AGG + chr1_3:1481274-1481293 None:intergenic 25.0%
!! TCAATCATTTGTTTAGTTTC+AGG - chr1_3:1481406-1481425 Msa0096040:CDS 25.0%
! ACTCTATTTGACATCAATAT+CGG - chr1_3:1481703-1481722 Msa0096040:CDS 25.0%
!!! TTTCATATTTTTGTTGTCCT+TGG - chr1_3:1482010-1482029 Msa0096040:five_prime_UTR 25.0%
!!! TTCATATTTTTGTTGTCCTT+GGG - chr1_3:1482011-1482030 Msa0096040:five_prime_UTR 25.0%
TGTTGGGTATAAATAGAGAA+AGG - chr1_3:1476375-1476394 Msa0096040:exon 30.0%
AAACGAAAACGAAGGAATAA+AGG - chr1_3:1476407-1476426 Msa0096040:CDS 30.0%
CGAATATGAAGGGTAATTAT+CGG - chr1_3:1476507-1476526 Msa0096040:CDS 30.0%
! TCGTTGTCTTTTAGATATTC+CGG + chr1_3:1476572-1476591 None:intergenic 30.0%
AAAAGACAACGAGTTCATAT+TGG - chr1_3:1476580-1476599 Msa0096040:CDS 30.0%
TTGTTCTTGTACAGTCATTT+GGG - chr1_3:1476753-1476772 Msa0096040:CDS 30.0%
! CTTTTTAATATTTGCAGCGA+TGG - chr1_3:1476779-1476798 Msa0096040:CDS 30.0%
! GTTTTCTGTCTAATATCTAC+AGG - chr1_3:1476832-1476851 Msa0096040:CDS 30.0%
!!! TTTTCTGAGCTTTTTTAACG+GGG - chr1_3:1476948-1476967 Msa0096040:CDS 30.0%
! CATGACCGGTAATAATTTTA+AGG - chr1_3:1476979-1476998 Msa0096040:CDS 30.0%
!! ACCGGTAATAATTTTAAGGA+TGG - chr1_3:1476983-1477002 Msa0096040:CDS 30.0%
!!! ATGGTTTTGGGTTTGATTTT+GGG - chr1_3:1477002-1477021 Msa0096040:CDS 30.0%
! TTCTCAAAACAAAGTTTTCC+AGG - chr1_3:1477104-1477123 Msa0096040:intron 30.0%
AATGATTAAGAAAGCAAACC+TGG + chr1_3:1477125-1477144 None:intergenic 30.0%
AAAGTTAGAGACTAATTTGG+TGG + chr1_3:1477293-1477312 None:intergenic 30.0%
AGAAATTTCTTACAATGACG+TGG + chr1_3:1477366-1477385 None:intergenic 30.0%
TCCCATTAACATAATTCAGT+TGG - chr1_3:1477535-1477554 Msa0096040:intron 30.0%
GCCAACTGAATTATGTTAAT+GGG + chr1_3:1477539-1477558 None:intergenic 30.0%
TGCCAACTGAATTATGTTAA+TGG + chr1_3:1477540-1477559 None:intergenic 30.0%
TACATATTTCTTGCTTGCTT+TGG + chr1_3:1477625-1477644 None:intergenic 30.0%
!!! TTTTCAAGTCTTTTCTTCCA+AGG + chr1_3:1477728-1477747 None:intergenic 30.0%
AACAAAAAGAGAAACAAGCT+AGG - chr1_3:1477790-1477809 Msa0096040:intron 30.0%
AACGATTGCAATCTTTATGT+AGG + chr1_3:1477901-1477920 None:intergenic 30.0%
!! ACATACTTTTGAGTATAAGG+AGG + chr1_3:1477924-1477943 None:intergenic 30.0%
TTCTCATAGTACTCCTTTAT+CGG + chr1_3:1478061-1478080 None:intergenic 30.0%
!! TTTGCTAATTTTGGCAGAAA+CGG + chr1_3:1478120-1478139 None:intergenic 30.0%
TCAACTCAAACTTTGAATCA+CGG + chr1_3:1478700-1478719 None:intergenic 30.0%
TCACTAAAGTTGTCATGAAA+TGG - chr1_3:1478940-1478959 Msa0096040:intron 30.0%
! CTTTTGCTTATATTAGTGAC+CGG + chr1_3:1479004-1479023 None:intergenic 30.0%
!! AAGGGTTTTATGATTAGAGA+CGG - chr1_3:1479333-1479352 Msa0096040:intron 30.0%
ATTACTTACACGACAAAACT+TGG - chr1_3:1479553-1479572 Msa0096040:intron 30.0%
AAACATGGATAGAAAGAGTT+TGG - chr1_3:1479669-1479688 Msa0096040:intron 30.0%
TTTAGTGTATGTTTGAATCC+AGG - chr1_3:1479801-1479820 Msa0096040:intron 30.0%
!!! TTATCCCTTTTGGAGTTATT+TGG + chr1_3:1479985-1480004 None:intergenic 30.0%
!!! CTCGATTTTTTTATCCCTTT+TGG + chr1_3:1479995-1480014 None:intergenic 30.0%
!!! CTTTTGTCTTAGTTTTGTCT+AGG + chr1_3:1480042-1480061 None:intergenic 30.0%
TTGATTCCACTATACATGAA+AGG - chr1_3:1480343-1480362 Msa0096040:intron 30.0%
TATACATGAAAGGATTACCA+CGG - chr1_3:1480353-1480372 Msa0096040:intron 30.0%
TGTTCAGCTATTCTCTTAAA+TGG + chr1_3:1480550-1480569 None:intergenic 30.0%
GAGAAAAGATTTCTTTGTCA+GGG + chr1_3:1480583-1480602 None:intergenic 30.0%
TGAGAAAAGATTTCTTTGTC+AGG + chr1_3:1480584-1480603 None:intergenic 30.0%
GTTTGATTGCATATATAGCA+AGG + chr1_3:1480653-1480672 None:intergenic 30.0%
!! GTTTATTGATTCATAGTCTG+AGG + chr1_3:1480970-1480989 None:intergenic 30.0%
TTGACTATAACATTACTCTC+TGG + chr1_3:1481077-1481096 None:intergenic 30.0%
AGAGAGTAATGTTATAGTCA+AGG - chr1_3:1481076-1481095 Msa0096040:intron 30.0%
!!! TGGAAGTATCCATTTTTGAT+AGG - chr1_3:1481450-1481469 Msa0096040:intron 30.0%
!!! GGAAGTATCCATTTTTGATA+GGG - chr1_3:1481451-1481470 Msa0096040:intron 30.0%
CAGAAAAACACGTAGTAAAT+TGG + chr1_3:1481665-1481684 None:intergenic 30.0%
AAGGAATAAAGATGCTCTAA+AGG + chr1_3:1481792-1481811 None:intergenic 30.0%
AGCATCTTTATTCCTTTCAA+TGG - chr1_3:1481796-1481815 Msa0096040:intron 30.0%
GCATCTTTATTCCTTTCAAT+GGG - chr1_3:1481797-1481816 Msa0096040:intron 30.0%
AATTGGATATGAGCTCTTAA+TGG - chr1_3:1481889-1481908 Msa0096040:CDS 30.0%
ATTGGATATGAGCTCTTAAT+GGG - chr1_3:1481890-1481909 Msa0096040:CDS 30.0%
!! TCATATTTTTGTTGTCCTTG+GGG - chr1_3:1482012-1482031 Msa0096040:five_prime_UTR 30.0%
!! TTGTCATAATCGATTTTCGA+AGG - chr1_3:1482059-1482078 Msa0096040:five_prime_UTR 30.0%
ATTACAACAATCCATTGGTA+GGG + chr1_3:1482173-1482192 None:intergenic 30.0%
CGAACAAACATAGTCATATG+AGG + chr1_3:1476354-1476373 None:intergenic 35.0%
TGACTATGTTTGTTCGTTGT+TGG - chr1_3:1476358-1476377 Msa0096040:three_prime_UTR 35.0%
GACTATGTTTGTTCGTTGTT+GGG - chr1_3:1476359-1476378 Msa0096040:three_prime_UTR 35.0%
GAGTAACAAAACGAAAACGA+AGG - chr1_3:1476399-1476418 Msa0096040:CDS 35.0%
TAATTACCCTTCATATTCGC+CGG + chr1_3:1476506-1476525 None:intergenic 35.0%
ATATGAAGGGTAATTATCGG+CGG - chr1_3:1476510-1476529 Msa0096040:CDS 35.0%
CATATTGGATTATTACCGGT+CGG - chr1_3:1476595-1476614 Msa0096040:CDS 35.0%
ACAACGAAACGCTAAATGTT+TGG - chr1_3:1476660-1476679 Msa0096040:CDS 35.0%
AACAACAACGATGTCAAACA+TGG + chr1_3:1476735-1476754 None:intergenic 35.0%
GTTGTTCTTGTACAGTCATT+TGG - chr1_3:1476752-1476771 Msa0096040:CDS 35.0%
TTTAATATTTGCAGCGATGG+CGG - chr1_3:1476782-1476801 Msa0096040:CDS 35.0%
!!! GATGGTTTTGGGTTTGATTT+TGG - chr1_3:1477001-1477020 Msa0096040:CDS 35.0%
!!! TGGTTTTGGGTTTGATTTTG+GGG - chr1_3:1477003-1477022 Msa0096040:CDS 35.0%
!! TAATTTGGTGGTTTGCTCAT+TGG + chr1_3:1477281-1477300 None:intergenic 35.0%
AACGATAGGAACCAATTTCA+TGG - chr1_3:1477489-1477508 Msa0096040:intron 35.0%
AACATAATTCAGTTGGCACT+TGG - chr1_3:1477542-1477561 Msa0096040:intron 35.0%
! CTAGAAAGACTTGCTTGATT+TGG + chr1_3:1477699-1477718 None:intergenic 35.0%
GACAAAGTCCAACATAAACA+AGG - chr1_3:1477765-1477784 Msa0096040:intron 35.0%
ATAAACCACCAAAATGCACT+AGG - chr1_3:1478031-1478050 Msa0096040:intron 35.0%
!! TTGCTAATTTTGGCAGAAAC+GGG + chr1_3:1478119-1478138 None:intergenic 35.0%
CATAATGATCAATTGTGCAC+AGG + chr1_3:1478180-1478199 None:intergenic 35.0%
! TTTGGAAAGTGTATTTGGCT+CGG - chr1_3:1478593-1478612 Msa0096040:intron 35.0%
CAACTCAAACTTTGAATCAC+GGG + chr1_3:1478699-1478718 None:intergenic 35.0%
AGAGAGAAAAAAGAAGAGAG+AGG + chr1_3:1478879-1478898 None:intergenic 35.0%
CATTAATAAAGTACACCCTC+CGG - chr1_3:1478982-1479001 Msa0096040:intron 35.0%
! TTTGTTATATTAGTGACCGG+AGG - chr1_3:1479107-1479126 Msa0096040:intron 35.0%
TTATGATTAGAGACGGAGAT+AGG - chr1_3:1479340-1479359 Msa0096040:intron 35.0%
TGGATAGAAAGAGTTTGGTT+TGG - chr1_3:1479674-1479693 Msa0096040:intron 35.0%
!!! AGTTTGGTTTGGTTGTGTTT+TGG - chr1_3:1479685-1479704 Msa0096040:intron 35.0%
!!! GTTGTGTTTTGGTTACAGTT+TGG - chr1_3:1479696-1479715 Msa0096040:intron 35.0%
GATGCCAAATAACTCCAAAA+GGG - chr1_3:1479978-1479997 Msa0096040:intron 35.0%
!! GTGGCTTTTAGTTGTTATCT+TGG + chr1_3:1480020-1480039 None:intergenic 35.0%
!!! TTGTCTTAGTTTTGTCTAGG+TGG + chr1_3:1480039-1480058 None:intergenic 35.0%
TACGCTGGAAAAGTTCAATT+TGG + chr1_3:1480123-1480142 None:intergenic 35.0%
GTCTCTTTCTTTCTGATCTT+TGG + chr1_3:1480164-1480183 None:intergenic 35.0%
GATGTTTCTTGCATTGTCTA+CGG + chr1_3:1480230-1480249 None:intergenic 35.0%
!!! AGGATTTTGAGATACAACCA+AGG - chr1_3:1480277-1480296 Msa0096040:intron 35.0%
GGTAATCCTTTCATGTATAG+TGG + chr1_3:1480352-1480371 None:intergenic 35.0%
TGATTTAGAAATACAAGCCG+TGG + chr1_3:1480373-1480392 None:intergenic 35.0%
GACATATTTGAGCTGATCTA+AGG + chr1_3:1480404-1480423 None:intergenic 35.0%
ATCTTCGACTATTGCAATCT+CGG + chr1_3:1480488-1480507 None:intergenic 35.0%
GCATATTATGCAGTGCAATA+TGG + chr1_3:1480692-1480711 None:intergenic 35.0%
! ATTGATTCATAGTCTGAGGA+GGG + chr1_3:1480966-1480985 None:intergenic 35.0%
!! TATTGATTCATAGTCTGAGG+AGG + chr1_3:1480967-1480986 None:intergenic 35.0%
!! TTCACGTTTGAGACAGATTT+TGG - chr1_3:1481430-1481449 Msa0096040:intron 35.0%
TTCTCTCACCCTATCAAAAA+TGG + chr1_3:1481462-1481481 None:intergenic 35.0%
TTTGATAGGGTGAGAGAATA+TGG - chr1_3:1481464-1481483 Msa0096040:intron 35.0%
GAACAGAAACAATTCCAAGA+TGG - chr1_3:1481486-1481505 Msa0096040:intron 35.0%
! AAAAAACAGGCTAAAGCGTT+TGG + chr1_3:1481588-1481607 None:intergenic 35.0%
!!! AACGCTTTAGCCTGTTTTTT+TGG - chr1_3:1481588-1481607 Msa0096040:intron 35.0%
AATCTAGACGCCAAAAAAAC+AGG + chr1_3:1481601-1481620 None:intergenic 35.0%
GTAGTAAATTGGAGCATAGA+AGG + chr1_3:1481654-1481673 None:intergenic 35.0%
AAATAGAGTAACCTTGCGTA+AGG + chr1_3:1481692-1481711 None:intergenic 35.0%
TGATTATTGCCATTACTCCT+AGG + chr1_3:1481730-1481749 None:intergenic 35.0%
!! TTCCTTTCAATGGGTTTTTC+AGG - chr1_3:1481806-1481825 Msa0096040:intron 35.0%
TACCTGAAAAACCCATTGAA+AGG + chr1_3:1481811-1481830 None:intergenic 35.0%
!!! GGGTTTTTCAGGTATTATTC+CGG - chr1_3:1481817-1481836 Msa0096040:CDS 35.0%
!!! TTTTTCAGGTATTATTCCGG+CGG - chr1_3:1481820-1481839 Msa0096040:CDS 35.0%
TCGCATATTGTAGTTGCAAT+TGG - chr1_3:1481872-1481891 Msa0096040:CDS 35.0%
TAACTAGAATACCAGAGAGA+TGG - chr1_3:1481945-1481964 Msa0096040:CDS 35.0%
GACTAGTAAAATGCACATGT+GGG + chr1_3:1482091-1482110 None:intergenic 35.0%
AGACTAGTAAAATGCACATG+TGG + chr1_3:1482092-1482111 None:intergenic 35.0%
CATTACAACAATCCATTGGT+AGG + chr1_3:1482174-1482193 None:intergenic 35.0%
! AGATTTTCCGGCGAATATGA+AGG - chr1_3:1476496-1476515 Msa0096040:CDS 40.0%
! GATTTTCCGGCGAATATGAA+GGG - chr1_3:1476497-1476516 Msa0096040:CDS 40.0%
TTCTTGTACAGTCATTTGGG+AGG - chr1_3:1476756-1476775 Msa0096040:CDS 40.0%
!!! GGTTTTGGGTTTGATTTTGG+GGG - chr1_3:1477004-1477023 Msa0096040:CDS 40.0%
!! GTTTGATTTTGGGGGTTTGT+TGG - chr1_3:1477012-1477031 Msa0096040:CDS 40.0%
AAGACGGGAAAACAGATCAA+CGG - chr1_3:1477075-1477094 Msa0096040:intron 40.0%
!! GTGCATTTTGGTGGTTTATG+AGG + chr1_3:1478030-1478049 None:intergenic 40.0%
! TTGGAAAGTGTATTTGGCTC+GGG - chr1_3:1478594-1478613 Msa0096040:intron 40.0%
AAGGTAAGCTACGAAAACGT+TGG - chr1_3:1478617-1478636 Msa0096040:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + chr1_3:1479000-1479019 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr1_3:1479001-1479020 None:intergenic 40.0%
TTATATTAGTGACCGGAGGA+GGG - chr1_3:1479111-1479130 Msa0096040:intron 40.0%
AACTATAATACACCCTCCTC+CGG + chr1_3:1479126-1479145 None:intergenic 40.0%
TGTATGTTTGAATCCAGGTC+AGG - chr1_3:1479806-1479825 Msa0096040:intron 40.0%
CTTCAAAAGAAAACCTGACC+TGG + chr1_3:1479822-1479841 None:intergenic 40.0%
!! GGTCAGGTTTTCTTTTGAAG+AGG - chr1_3:1479822-1479841 Msa0096040:intron 40.0%
GGTAAGATCAAAGATTGCAG+AGG - chr1_3:1479920-1479939 Msa0096040:intron 40.0%
!!! TGTTGTTTTTGGTGCTCAGA+GGG + chr1_3:1479953-1479972 None:intergenic 40.0%
!!! TTGTTGTTTTTGGTGCTCAG+AGG + chr1_3:1479954-1479973 None:intergenic 40.0%
! TTTGGAGTTATTTGGCATCC+TGG + chr1_3:1479977-1479996 None:intergenic 40.0%
GGATGCCAAATAACTCCAAA+AGG - chr1_3:1479977-1479996 Msa0096040:intron 40.0%
!! ACTTTGGAGCTTTCACTCTT+TGG + chr1_3:1480073-1480092 None:intergenic 40.0%
TTTGTTCGTGATCAATACGC+TGG + chr1_3:1480138-1480157 None:intergenic 40.0%
CAGAAAGAAAGAGACACCTT+AGG - chr1_3:1480169-1480188 Msa0096040:intron 40.0%
ACTACTACTCCGAAACCAAA+CGG - chr1_3:1480251-1480270 Msa0096040:intron 40.0%
! AATCCTAGTCCGTTTGGTTT+CGG + chr1_3:1480263-1480282 None:intergenic 40.0%
TCTCAAAATCCTAGTCCGTT+TGG + chr1_3:1480269-1480288 None:intergenic 40.0%
GCGCTTTAGTTGTGTGTTAT+CGG + chr1_3:1480321-1480340 None:intergenic 40.0%
TTGCAATCTCGGGAATCTAT+GGG + chr1_3:1480477-1480496 None:intergenic 40.0%
ATTGCAATCTCGGGAATCTA+TGG + chr1_3:1480478-1480497 None:intergenic 40.0%
TCTTCGACTATTGCAATCTC+GGG + chr1_3:1480487-1480506 None:intergenic 40.0%
AAAGATTTCTTTGTCAGGGC+AGG + chr1_3:1480579-1480598 None:intergenic 40.0%
TTGCATATATAGCAAGGTGC+TGG + chr1_3:1480647-1480666 None:intergenic 40.0%
! GTTTTGTCTGTAACAGATGC+AGG + chr1_3:1480714-1480733 None:intergenic 40.0%
!! TTCAAGTTGACAGCAAGAAG+AGG + chr1_3:1480781-1480800 None:intergenic 40.0%
TTGATTCATAGTCTGAGGAG+GGG + chr1_3:1480965-1480984 None:intergenic 40.0%
GTCTGAAAAATCCGAAGTTG+CGG + chr1_3:1481003-1481022 None:intergenic 40.0%
TTAAATCCTAGAGCGTGTCT+CGG + chr1_3:1481051-1481070 None:intergenic 40.0%
AAACAATTCCAAGATGGCCA+TGG - chr1_3:1481492-1481511 Msa0096040:intron 40.0%
AAAATGAACCATGGCCATCT+TGG + chr1_3:1481503-1481522 None:intergenic 40.0%
! TGGCCATGGTTCATTTTCTT+AGG - chr1_3:1481506-1481525 Msa0096040:intron 40.0%
CCACCTAAGAAAATGAACCA+TGG + chr1_3:1481512-1481531 None:intergenic 40.0%
! CCATGGTTCATTTTCTTAGG+TGG - chr1_3:1481509-1481528 Msa0096040:intron 40.0%
! TGGTTCATTTTCTTAGGTGG+AGG - chr1_3:1481512-1481531 Msa0096040:intron 40.0%
!! GTGTTGCTTACTTTGCAGTT+CGG - chr1_3:1481538-1481557 Msa0096040:intron 40.0%
! TTTTGGCGTCTAGATTATGC+TGG - chr1_3:1481605-1481624 Msa0096040:intron 40.0%
! TTTTCTGCAATCCTTACGCA+AGG - chr1_3:1481678-1481697 Msa0096040:CDS 40.0%
TTGACATCAATATCGGTCCT+AGG - chr1_3:1481710-1481729 Msa0096040:CDS 40.0%
AATATCGGTCCTAGGAGTAA+TGG - chr1_3:1481718-1481737 Msa0096040:intron 40.0%
! TGAAAGTGATGGGGAAAGAA+GGG + chr1_3:1481753-1481772 None:intergenic 40.0%
! ATGAAAGTGATGGGGAAAGA+AGG + chr1_3:1481754-1481773 None:intergenic 40.0%
ATCGAGGTGATGAAAGTGAT+GGG + chr1_3:1481763-1481782 None:intergenic 40.0%
AATCGAGGTGATGAAAGTGA+TGG + chr1_3:1481764-1481783 None:intergenic 40.0%
TTCATGCTCTCGTAAGCAAT+TGG - chr1_3:1481843-1481862 Msa0096040:CDS 40.0%
TCATGCTCTCGTAAGCAATT+GGG - chr1_3:1481844-1481863 Msa0096040:CDS 40.0%
ATGGGCATTCTATATGCAAC+AGG - chr1_3:1481908-1481927 Msa0096040:CDS 40.0%
AACAATCCATTGGTAGGGTT+TGG + chr1_3:1482168-1482187 None:intergenic 40.0%
CCTGCATTACAACAATCCAT+TGG + chr1_3:1482178-1482197 None:intergenic 40.0%
!! CCAATGGATTGTTGTAATGC+AGG - chr1_3:1482175-1482194 Msa0096040:five_prime_UTR 40.0%
! AGGAATAAAGGTGCAAGCGA+CGG - chr1_3:1476419-1476438 Msa0096040:CDS 45.0%
TGGATTATTACCGGTCGGAA+TGG - chr1_3:1476600-1476619 Msa0096040:CDS 45.0%
TTATTACCGGTCGGAATGGT+CGG - chr1_3:1476604-1476623 Msa0096040:CDS 45.0%
! AGTCTTTCTAGCACAAGCCT+TGG - chr1_3:1477708-1477727 Msa0096040:intron 45.0%
! GATCACCTAGTGCATTTTGG+TGG + chr1_3:1478039-1478058 None:intergenic 45.0%
! TCGGATCACCTAGTGCATTT+TGG + chr1_3:1478042-1478061 None:intergenic 45.0%
TGCACTAGGTGATCCGATAA+AGG - chr1_3:1478045-1478064 Msa0096040:intron 45.0%
CAATTGTGCACAGGAGATTG+TGG + chr1_3:1478171-1478190 None:intergenic 45.0%
!! AAAGTGTATTTGGCTCGGGA+AGG - chr1_3:1478598-1478617 Msa0096040:intron 45.0%
TTGGCCTATCCAGGATAAGT+GGG - chr1_3:1478636-1478655 Msa0096040:intron 45.0%
GGAAGAACAGAGACTACATG+GGG + chr1_3:1478678-1478697 None:intergenic 45.0%
GGGAAGAACAGAGACTACAT+GGG + chr1_3:1478679-1478698 None:intergenic 45.0%
GTTATATTAGTGACCGGAGG+AGG - chr1_3:1479110-1479129 Msa0096040:intron 45.0%
!!! GTTGTTTTTGGTGCTCAGAG+GGG + chr1_3:1479952-1479971 None:intergenic 45.0%
GAGCACCAAAAACAACAACC+AGG - chr1_3:1479956-1479975 Msa0096040:intron 45.0%
!!! GGCATCCTGGTTGTTGTTTT+TGG + chr1_3:1479964-1479983 None:intergenic 45.0%
! TGGCTTGGAGTAAGATCCTA+AGG + chr1_3:1480188-1480207 None:intergenic 45.0%
GTCTTCCAGTAACTCGTTAG+TGG + chr1_3:1480208-1480227 None:intergenic 45.0%
!!! TCGCGTTTTGAGAGATTCCT+TGG + chr1_3:1480297-1480316 None:intergenic 45.0%
GAGTGGAATTATTGGCAGCA+AGG + chr1_3:1480441-1480460 None:intergenic 45.0%
TGCCAATAATTCCACTCTCG+AGG - chr1_3:1480444-1480463 Msa0096040:intron 45.0%
AGCCTCGAGAGTGGAATTAT+TGG + chr1_3:1480449-1480468 None:intergenic 45.0%
TGCAATCTCGGGAATCTATG+GGG + chr1_3:1480476-1480495 None:intergenic 45.0%
AAGTTGACAGCAAGAAGAGG+AGG + chr1_3:1480778-1480797 None:intergenic 45.0%
!! TGCTTTTGGTTGGAAGCAGA+GGG + chr1_3:1480858-1480877 None:intergenic 45.0%
TGATTCATAGTCTGAGGAGG+GGG + chr1_3:1480964-1480983 None:intergenic 45.0%
CACGTTTGATCAACTTGACC+CGG + chr1_3:1481122-1481141 None:intergenic 45.0%
!! GGTCAAGTTGATCAAACGTG+CGG - chr1_3:1481122-1481141 Msa0096040:intron 45.0%
TCGAGGTGATGAAAGTGATG+GGG + chr1_3:1481762-1481781 None:intergenic 45.0%
!! GCTCTAAAGGTTCGAAATCG+AGG + chr1_3:1481779-1481798 None:intergenic 45.0%
CATGCTCTCGTAAGCAATTG+GGG - chr1_3:1481845-1481864 Msa0096040:CDS 45.0%
CCTGCAATATCAAATGCTCC+AGG + chr1_3:1481974-1481993 None:intergenic 45.0%
! CCTGGAGCATTTGATATTGC+AGG - chr1_3:1481971-1481990 Msa0096040:exon 45.0%
! GATTATGACAAGTGTCGCAG+TGG + chr1_3:1482050-1482069 None:intergenic 45.0%
TAGCAACCAAACCCTACCAA+TGG - chr1_3:1482159-1482178 Msa0096040:five_prime_UTR 45.0%
!!! TTTACTAATTAAAATTATTT+TGG - chr1_3:1481336-1481355 Msa0096040:intron 5.0%
! GGAATAAAGGTGCAAGCGAC+GGG - chr1_3:1476420-1476439 Msa0096040:CDS 50.0%
GTTGCGATTGGTGAAGTACG+AGG - chr1_3:1476541-1476560 Msa0096040:CDS 50.0%
GGTGAAGTACGAGGAATTGC+CGG - chr1_3:1476550-1476569 Msa0096040:CDS 50.0%
! CTTTGTTCAGCGTTTTCGCG+TGG - chr1_3:1476636-1476655 Msa0096040:CDS 50.0%
!! TTTGGGGGTTTGTTGGTGTG+TGG - chr1_3:1477019-1477038 Msa0096040:CDS 50.0%
!! GGTTTGTTGGTGTGTGGTGT+GGG - chr1_3:1477025-1477044 Msa0096040:CDS 50.0%
! ACGAAAACGTTGGCCTATCC+AGG - chr1_3:1478627-1478646 Msa0096040:intron 50.0%
! GTTGGCCTATCCAGGATAAG+TGG - chr1_3:1478635-1478654 Msa0096040:intron 50.0%
CTGACCCACTTATCCTGGAT+AGG + chr1_3:1478643-1478662 None:intergenic 50.0%
CTAAGCTGACCCACTTATCC+TGG + chr1_3:1478648-1478667 None:intergenic 50.0%
CAGAGACTACATGGGGAGAT+GGG + chr1_3:1478671-1478690 None:intergenic 50.0%
ACAGAGACTACATGGGGAGA+TGG + chr1_3:1478672-1478691 None:intergenic 50.0%
CGGGAAGAACAGAGACTACA+TGG + chr1_3:1478680-1478699 None:intergenic 50.0%
CCAGTAACTCGTTAGTGGCT+TGG + chr1_3:1480203-1480222 None:intergenic 50.0%
CCAAGCCACTAACGAGTTAC+TGG - chr1_3:1480200-1480219 Msa0096040:intron 50.0%
! ACTCCGAAACCAAACGGACT+AGG - chr1_3:1480257-1480276 Msa0096040:intron 50.0%
!! CAGCAAGGTGCATTGATTCG+AGG + chr1_3:1480426-1480445 None:intergenic 50.0%
!! CAAGGTGCTGGCAGCAATAT+TGG + chr1_3:1480635-1480654 None:intergenic 50.0%
ACAGCAAGAAGAGGAGGCTT+TGG + chr1_3:1480772-1480791 None:intergenic 50.0%
!! GTGCTTTTGGTTGGAAGCAG+AGG + chr1_3:1480859-1480878 None:intergenic 50.0%
! TAGGGTCTGGTGCTTTTGGT+TGG + chr1_3:1480868-1480887 None:intergenic 50.0%
! CTCATAGGGTCTGGTGCTTT+TGG + chr1_3:1480872-1480891 None:intergenic 50.0%
GTAGAGGGGACGTTCTCATA+GGG + chr1_3:1480886-1480905 None:intergenic 50.0%
TGTAGAGGGGACGTTCTCAT+AGG + chr1_3:1480887-1480906 None:intergenic 50.0%
AATCCGAAGTTGCGGCAGTT+TGG + chr1_3:1480995-1481014 None:intergenic 50.0%
ATGTTACCGAGACACGCTCT+AGG - chr1_3:1481042-1481061 Msa0096040:intron 50.0%
AAACGTGCGGTAGAAAGCCA+CGG - chr1_3:1481135-1481154 Msa0096040:intron 50.0%
AAAGCCACGGAAACGTCATG+CGG - chr1_3:1481148-1481167 Msa0096040:intron 50.0%
GGAGTGGCAAGCAAGAAGAT+GGG + chr1_3:1481567-1481586 None:intergenic 50.0%
TGGAGTGGCAAGCAAGAAGA+TGG + chr1_3:1481568-1481587 None:intergenic 50.0%
! ACAGGCTAAAGCGTTTGGAG+TGG + chr1_3:1481583-1481602 None:intergenic 50.0%
ATACCAGAGAGATGGAAGCC+TGG - chr1_3:1481953-1481972 Msa0096040:CDS 50.0%
GCGGAAGAGAACGTTGCGAT+TGG - chr1_3:1476529-1476548 Msa0096040:CDS 55.0%
CCTTAACCGACCATTCCGAC+CGG + chr1_3:1476613-1476632 None:intergenic 55.0%
ACGGGGCAAGTTAGCATGAC+CGG - chr1_3:1476965-1476984 Msa0096040:CDS 55.0%
!! GGGTTTGTTGGTGTGTGGTG+TGG - chr1_3:1477024-1477043 Msa0096040:CDS 55.0%
TGTGGTGTGGGAGCAGAGTT+GGG - chr1_3:1477037-1477056 Msa0096040:CDS 55.0%
!! GGTGCTGGCAGCAATATTGG+TGG + chr1_3:1480632-1480651 None:intergenic 55.0%
!! TGCTGCTGGCTGTGCTGTTT+CGG + chr1_3:1480919-1480938 None:intergenic 55.0%
TGGTGCTTTCTTGCTGCTGC+TGG + chr1_3:1480933-1480952 None:intergenic 55.0%
CTGCCAAACTGCCGCAACTT+CGG - chr1_3:1480989-1481008 Msa0096040:intron 55.0%
GAAACCGCATGACGTTTCCG+TGG + chr1_3:1481155-1481174 None:intergenic 55.0%
! CTTACGAGAGCATGAACCGC+CGG + chr1_3:1481839-1481858 None:intergenic 55.0%
CCGGTCGGAATGGTCGGTTA+AGG - chr1_3:1476610-1476629 Msa0096040:CDS 60.0%
! ATTTGCAGCGATGGCGGCGA+CGG - chr1_3:1476788-1476807 Msa0096040:CDS 60.0%
GTGTGGTGTGGGAGCAGAGT+TGG - chr1_3:1477036-1477055 Msa0096040:CDS 60.0%
GTGGTGTGGGAGCAGAGTTG+GGG - chr1_3:1477038-1477057 Msa0096040:CDS 60.0%
! TGGGGCTTTAGCCTCGAGAG+TGG + chr1_3:1480458-1480477 None:intergenic 60.0%
GGGGACGTTCTCATAGGGTC+TGG + chr1_3:1480881-1480900 None:intergenic 60.0%
GAGAACGTCCCCTCTACAGC+AGG - chr1_3:1480889-1480908 Msa0096040:intron 60.0%
TTCGGTCGGCCTGCTGTAGA+GGG + chr1_3:1480901-1480920 None:intergenic 60.0%
TTTCGGTCGGCCTGCTGTAG+AGG + chr1_3:1480902-1480921 None:intergenic 60.0%
!! GCTGGCTGTGCTGTTTCGGT+CGG + chr1_3:1480915-1480934 None:intergenic 60.0%
GCTCCAGGCTTCCATCTCTC+TGG + chr1_3:1481959-1481978 None:intergenic 60.0%
TGGCATGTGCAAGTGCCCCA+AGG + chr1_3:1482030-1482049 None:intergenic 60.0%
ACGGAAGCTGGAGGAGGAGG+AGG - chr1_3:1476807-1476826 Msa0096040:CDS 65.0%
GAAGCTGGAGGAGGAGGAGG+TGG - chr1_3:1476810-1476829 Msa0096040:CDS 65.0%
TGGGAGCAGAGTTGGGGCGA+CGG - chr1_3:1477044-1477063 Msa0096040:CDS 65.0%
GGCGACGGGGTCGTTGAAGA+CGG - chr1_3:1477059-1477078 Msa0096040:intron 65.0%
GCGACGGGGTCGTTGAAGAC+GGG - chr1_3:1477060-1477079 Msa0096040:intron 65.0%
TCGGTCGGCCTGCTGTAGAG+GGG + chr1_3:1480900-1480919 None:intergenic 65.0%
CTGAGGAGGGGGTCTGTCTG+TGG + chr1_3:1480953-1480972 None:intergenic 65.0%
ATGGCGGCGACGGAAGCTGG+AGG - chr1_3:1476798-1476817 Msa0096040:CDS 70.0%
GCGACGGAAGCTGGAGGAGG+AGG - chr1_3:1476804-1476823 Msa0096040:CDS 70.0%
GGGAGCAGAGTTGGGGCGAC+GGG - chr1_3:1477045-1477064 Msa0096040:CDS 70.0%
GGAGCAGAGTTGGGGCGACG+GGG - chr1_3:1477046-1477065 Msa0096040:CDS 70.0%
! GCGATGGCGGCGACGGAAGC+TGG - chr1_3:1476795-1476814 Msa0096040:CDS 75.0%
GCGGCGACGGAAGCTGGAGG+AGG - chr1_3:1476801-1476820 Msa0096040:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1476261 1482238 1476261 ID=Msa0096040;Name=Msa0096040
chr1_3 mRNA 1476261 1482238 1476261 ID=Msa0096040-mRNA-1;Parent=Msa0096040;Name=Msa0096040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=251|1|1|1|0.66|0.75|4|130|339
chr1_3 exon 1476261 1477077 1476261 ID=Msa0096040-mRNA-1:exon:312;Parent=Msa0096040-mRNA-1
chr1_3 exon 1481374 1481446 1481374 ID=Msa0096040-mRNA-1:exon:311;Parent=Msa0096040-mRNA-1
chr1_3 exon 1481646 1481732 1481646 ID=Msa0096040-mRNA-1:exon:310;Parent=Msa0096040-mRNA-1
chr1_3 exon 1481815 1482238 1481815 ID=Msa0096040-mRNA-1:exon:309;Parent=Msa0096040-mRNA-1
chr1_3 five_prime_UTR 1481988 1482238 1481988 ID=Msa0096040-mRNA-1:five_prime_utr;Parent=Msa0096040-mRNA-1
chr1_3 CDS 1481815 1481987 1481815 ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1
chr1_3 CDS 1481646 1481732 1481646 ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1
chr1_3 CDS 1481374 1481446 1481374 ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1
chr1_3 CDS 1476391 1477077 1476391 ID=Msa0096040-mRNA-1:cds;Parent=Msa0096040-mRNA-1
chr1_3 three_prime_UTR 1476261 1476390 1476261 ID=Msa0096040-mRNA-1:three_prime_utr;Parent=Msa0096040-mRNA-1
Gene Sequence

>Msa0096040

ATGAAGGGTAATTATCGGCGGAAGAGAACGTTGCGATTGGTGAAGTACGAGGAATTGCCGGAATATCTAAAAGACAACGAGTTCATATTGGATTATTACCGGTCGGAATGGTCGGTTAAGGATGCTTTGTTCAGCGTTTTCGCGTGGCACAACGAAACGCTAAATGTTTGGACTCATTTGGGAGGCTTTTTAATATTTGCAGCGATGGCGGCGACGGAAGCTGGAGGAGGAGGAGGTGGTTTTCTGTCTAATATCTACAGAGTTGGGGCGACGGGGTCGTTGAAGACGGGAAAACAGATCAACGGTTCTTATTCTCAAAACAAAGTTTTCCAGTTTCAGGATTCACGTTTGAGACAGATTTTGGAAGTATCCATTTTTGATAGGGTGAGAGAATATGGAACAGAAACAATTCCAAGATGGCCATGGTTCATTTTCTTAGGTGGAGGAATGTGTTGCTTACTTTGCAGTTCGGTTTCCCATCTTCTTGCTTGCCACTCCAAACGCTTTAGCCTGTTTTTTTGGCGTCTAGATTATGCTGGAATATCAATTATGATAATATGCTCCTTCTATGCTCCAATTTACTACGTGTTTTTCTGCAATCCTTACGCAAGGTTACTCTATTTGACATCAATATCGGTCCTAGGAGTAATGGCAATAATCACCCTTCTTTCCCCATCACTTTCATCACCTCGATTTCGAACCTTTAGAGCATCTTTATTCCTTTCAATGGGTTTTTCAGGTATTATTCCGGCGGTTCATGCTCTCGTAAGCAATTGGGGAAACTCGCATATTGTAGTTGCAATTGGATATGAGCTCTTAATGGGCATTCTATATGCAACAGGTGCTGTGTTTTATGTAACTAGAATACCAGAGAGATGGAAGCCTGGAGCATTTGATATTGCAGGACATAGTCATCAGATTTTTCATATTTTTGTTGTCCTTGGGGCACTTGCACATGCCACTGCGACACTTGTCATAATCGATTTTCGAAGGCGATCACCCACATGTGCATTTTACTAG

Protein sequence

>Msa0096040

MKGNYRRKRTLRLVKYEELPEYLKDNEFILDYYRSEWSVKDALFSVFAWHNETLNVWTHLGGFLIFAAMAATEAGGGGGGFLSNIYRVGATGSLKTGKQINGSYSQNKVFQFQDSRLRQILEVSIFDRVREYGTETIPRWPWFIFLGGGMCCLLCSSVSHLLACHSKRFSLFFWRLDYAGISIMIICSFYAPIYYVFFCNPYARLLYLTSISVLGVMAIITLLSPSLSSPRFRTFRASLFLSMGFSGIIPAVHALVSNWGNSHIVVAIGYELLMGILYATGAVFYVTRIPERWKPGAFDIAGHSHQIFHIFVVLGALAHATATLVIIDFRRRSPTCAFY*