Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0288290 | XP_024630378.1 | 97.231 | 325 | 8 | 1 | 1 | 325 | 1 | 324 | 0.0 | 641 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0288290 | sp|Q84N34|HHP2_ARATH | 56.845 | 336 | 125 | 5 | 1 | 325 | 19 | 345 | 1.73e-133 | 386 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0288290 | A0A396JFZ6 | 97.231 | 325 | 8 | 1 | 1 | 325 | 1 | 324 | 0.0 | 641 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0096040 | Msa0288290 | 0.881481 | 2.316642e-70 | -8.615850e-47 |
Msa0288290 | Msa0288370 | 0.852783 | 3.681195e-61 | -8.615850e-47 |
Msa0288290 | Msa0485340 | 0.876367 | 1.477097e-68 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0288290 | MtrunA17_Chr2g0305481 | 97.231 | 325 | 8 | 1 | 1 | 325 | 1 | 324 | 0.0 | 641 |
Msa0288290 | MtrunA17_Chr4g0064481 | 49.085 | 328 | 146 | 3 | 4 | 324 | 38 | 351 | 6.16e-107 | 316 |
Msa0288290 | MtrunA17_Chr5g0401021 | 42.776 | 353 | 157 | 4 | 7 | 325 | 28 | 369 | 1.48e-89 | 272 |
Msa0288290 | MtrunA17_Chr3g0134921 | 43.099 | 355 | 166 | 6 | 7 | 325 | 32 | 386 | 4.29e-88 | 269 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0288290 | AT4G30850.2 | 56.845 | 336 | 125 | 5 | 1 | 325 | 19 | 345 | 1.76e-134 | 386 |
Msa0288290 | AT4G30850.1 | 56.845 | 336 | 125 | 5 | 1 | 325 | 19 | 345 | 1.76e-134 | 386 |
Msa0288290 | AT2G24150.1 | 56.051 | 314 | 123 | 4 | 12 | 325 | 33 | 331 | 2.22e-123 | 358 |
Msa0288290 | AT5G20270.1 | 46.605 | 324 | 127 | 1 | 2 | 325 | 45 | 322 | 5.71e-101 | 300 |
Msa0288290 | AT2G24150.2 | 67.016 | 191 | 63 | 0 | 135 | 325 | 52 | 242 | 5.01e-95 | 282 |
Msa0288290 | AT4G37680.3 | 42.210 | 353 | 175 | 4 | 2 | 325 | 28 | 380 | 8.91e-92 | 279 |
Msa0288290 | AT4G37680.4 | 42.210 | 353 | 175 | 4 | 2 | 325 | 28 | 380 | 8.91e-92 | 279 |
Msa0288290 | AT4G37680.1 | 42.210 | 353 | 175 | 4 | 2 | 325 | 23 | 375 | 1.47e-91 | 278 |
Msa0288290 | AT4G37680.5 | 42.210 | 353 | 175 | 4 | 2 | 325 | 23 | 375 | 1.47e-91 | 278 |
Msa0288290 | AT4G37680.2 | 42.210 | 353 | 175 | 4 | 2 | 325 | 23 | 375 | 1.47e-91 | 278 |
Msa0288290 | AT4G38320.1 | 42.045 | 352 | 175 | 4 | 2 | 324 | 23 | 374 | 6.38e-90 | 273 |
Msa0288290 | AT2G40710.1 | 56.627 | 83 | 36 | 0 | 243 | 325 | 1 | 83 | 1.72e-26 | 100 |
Msa0288290 | AT4G38290.1 | 68.421 | 57 | 18 | 0 | 269 | 325 | 42 | 98 | 2.86e-21 | 87.4 |
Find 91 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCACGTTTGAGACAGATTT+TGG | 0.180770 | 2_3:+33092536 | Msa0288290:CDS |
TTTGATAGGGTGAGAGAATA+TGG | 0.256564 | 2_3:+33092570 | Msa0288290:CDS |
AATTGGATATGAGCTCTTAA+TGG | 0.270809 | 2_3:+33092995 | Msa0288290:CDS |
GTTGTTCTTGTACAGTCATT+TGG | 0.300362 | 2_3:+33087532 | Msa0288290:intron |
AGCATCTTTATTCCTTTCAA+TGG | 0.327223 | 2_3:+33092902 | Msa0288290:CDS |
TTGTTCTTGTACAGTCATTT+GGG | 0.334474 | 2_3:+33087533 | Msa0288290:intron |
AAAAGACAACGAGTTCATAT+TGG | 0.344022 | 2_3:+33087360 | Msa0288290:CDS |
GCGATGGCGGCGACGGAAGC+TGG | 0.345791 | 2_3:+33087575 | Msa0288290:CDS |
AACAATCCATTGGTAGGGTT+TGG | 0.348659 | 2_3:-33093269 | None:intergenic |
TTCATGCTCTCGTAAGCAAT+TGG | 0.354615 | 2_3:+33092949 | Msa0288290:CDS |
ACTCTATTTGACATCAATAT+CGG | 0.361427 | 2_3:+33092809 | Msa0288290:CDS |
ATTTATTTAGATTAGATGAT+TGG | 0.363801 | 2_3:-33087046 | None:intergenic |
TGACTATGTTTGTTCGTTGT+TGG | 0.367410 | 2_3:+33087138 | Msa0288290:five_prime_UTR |
GGGAGCAGAGTTGGGGCGAC+GGG | 0.368194 | 2_3:+33087825 | Msa0288290:intron |
CCTGGAGCATTTGATATTGC+AGG | 0.369519 | 2_3:+33093077 | Msa0288290:CDS |
AGTTCATATTGGATTATTAC+CGG | 0.383152 | 2_3:+33087371 | Msa0288290:CDS |
AAACGAAAACGAAGGAATAA+AGG | 0.390532 | 2_3:+33087187 | Msa0288290:five_prime_UTR |
GACTATGTTTGTTCGTTGTT+GGG | 0.392950 | 2_3:+33087139 | Msa0288290:five_prime_UTR |
TCGCATATTGTAGTTGCAAT+TGG | 0.397993 | 2_3:+33092978 | Msa0288290:CDS |
AAAATGAACCATGGCCATCT+TGG | 0.399515 | 2_3:-33092606 | None:intergenic |
TCATGCTCTCGTAAGCAATT+GGG | 0.408002 | 2_3:+33092950 | Msa0288290:CDS |
GCGACGGAAGCTGGAGGAGG+AGG | 0.408012 | 2_3:+33087584 | Msa0288290:CDS |
ACAACGAAACGCTAAATGTT+TGG | 0.429326 | 2_3:+33087440 | Msa0288290:CDS |
ATTGGATATGAGCTCTTAAT+GGG | 0.433906 | 2_3:+33092996 | Msa0288290:CDS |
ACGGAAGCTGGAGGAGGAGG+AGG | 0.442291 | 2_3:+33087587 | Msa0288290:CDS |
GGTGAAGTACGAGGAATTGC+CGG | 0.443305 | 2_3:+33087330 | Msa0288290:CDS |
TGGGAGCAGAGTTGGGGCGA+CGG | 0.450948 | 2_3:+33087824 | Msa0288290:intron |
AGATTAGATGATTGGTTTCG+TGG | 0.457726 | 2_3:-33087038 | None:intergenic |
GGAATAAAGGTGCAAGCGAC+GGG | 0.459408 | 2_3:+33087200 | Msa0288290:five_prime_UTR |
ATGGGCATTCTATATGCAAC+AGG | 0.462499 | 2_3:+33093014 | Msa0288290:CDS |
GCATCTTTATTCCTTTCAAT+GGG | 0.465831 | 2_3:+33092903 | Msa0288290:CDS |
CGAATATGAAGGGTAATTAT+CGG | 0.467352 | 2_3:+33087287 | Msa0288290:exon |
GTAGTAAATTGGAGCATAGA+AGG | 0.468904 | 2_3:-33092757 | None:intergenic |
TGGAGTGGCAAGCAAGAAGA+TGG | 0.469300 | 2_3:-33092671 | None:intergenic |
CCGGTCGGAATGGTCGGTTA+AGG | 0.472175 | 2_3:+33087390 | Msa0288290:CDS |
GTGTTGCTTACTTTGCAGTT+CGG | 0.481770 | 2_3:+33092644 | Msa0288290:CDS |
TGATTATTGCCATTACTCCT+AGG | 0.484435 | 2_3:-33092833 | None:intergenic |
GCGGCGACGGAAGCTGGAGG+AGG | 0.486075 | 2_3:+33087581 | Msa0288290:CDS |
CATTACAACAATCCATTGGT+AGG | 0.487060 | 2_3:-33093275 | None:intergenic |
ATGAAAGTGATGGGGAAAGA+AGG | 0.490228 | 2_3:-33092857 | None:intergenic |
TTTAATATTTGCAGCGATGG+CGG | 0.490595 | 2_3:+33087562 | Msa0288290:CDS |
TGGATTATTACCGGTCGGAA+TGG | 0.492532 | 2_3:+33087380 | Msa0288290:CDS |
AAGGAATAAAGATGCTCTAA+AGG | 0.495018 | 2_3:-33092895 | None:intergenic |
GAAGCTGGAGGAGGAGGAGG+TGG | 0.496794 | 2_3:+33087590 | Msa0288290:CDS |
GCGACGGGGTCGTTGAAGAC+GGG | 0.498294 | 2_3:+33087840 | Msa0288290:CDS |
AGGAATAAAGGTGCAAGCGA+CGG | 0.501490 | 2_3:+33087199 | Msa0288290:five_prime_UTR |
GCTCCAGGCTTCCATCTCTC+TGG | 0.506779 | 2_3:-33093062 | None:intergenic |
TTATTACCGGTCGGAATGGT+CGG | 0.518312 | 2_3:+33087384 | Msa0288290:CDS |
TTGACATCAATATCGGTCCT+AGG | 0.520515 | 2_3:+33092816 | Msa0288290:CDS |
ATACCAGAGAGATGGAAGCC+TGG | 0.520590 | 2_3:+33093059 | Msa0288290:CDS |
CGAACAAACATAGTCATATG+AGG | 0.522377 | 2_3:-33087131 | None:intergenic |
ATTTGCAGCGATGGCGGCGA+CGG | 0.523006 | 2_3:+33087568 | Msa0288290:CDS |
GGCGACGGGGTCGTTGAAGA+CGG | 0.536340 | 2_3:+33087839 | Msa0288290:CDS |
CCAATGGATTGTTGTAATGC+AGG | 0.537390 | 2_3:+33093279 | Msa0288290:three_prime_UTR |
GATAGTATAAATTTAATCGC+CGG | 0.538820 | 2_3:+33087237 | Msa0288290:five_prime_UTR |
ATCGAGGTGATGAAAGTGAT+GGG | 0.541396 | 2_3:-33092866 | None:intergenic |
TAATTACCCTTCATATTCGC+CGG | 0.541667 | 2_3:-33087283 | None:intergenic |
AAACTAGTAAAATGCACATG+TGG | 0.545575 | 2_3:-33093194 | None:intergenic |
AATATCGGTCCTAGGAGTAA+TGG | 0.546762 | 2_3:+33092824 | Msa0288290:CDS |
GCGGAAGAGAACGTTGCGAT+TGG | 0.550524 | 2_3:+33087309 | Msa0288290:CDS |
ATTACAACAATCCATTGGTA+GGG | 0.555645 | 2_3:-33093274 | None:intergenic |
AAATAGAGTAACCTTGCGTA+AGG | 0.563549 | 2_3:-33092795 | None:intergenic |
CATGCTCTCGTAAGCAATTG+GGG | 0.565438 | 2_3:+33092951 | Msa0288290:CDS |
TGTTGGGTATAAATAGAGAA+AGG | 0.573206 | 2_3:+33087155 | Msa0288290:five_prime_UTR |
TTCTTGTACAGTCATTTGGG+AGG | 0.573521 | 2_3:+33087536 | Msa0288290:intron |
TAACTAGAATACCAGAGAGA+TGG | 0.576093 | 2_3:+33093051 | Msa0288290:CDS |
CCTGCAATATCAAATGCTCC+AGG | 0.579712 | 2_3:-33093077 | None:intergenic |
AATCGAGGTGATGAAAGTGA+TGG | 0.582826 | 2_3:-33092867 | None:intergenic |
TGAAAGTGATGGGGAAAGAA+GGG | 0.590589 | 2_3:-33092856 | None:intergenic |
GCTCTAAAGGTTCGAAATCG+AGG | 0.591484 | 2_3:-33092882 | None:intergenic |
CATATTGGATTATTACCGGT+CGG | 0.594477 | 2_3:+33087375 | Msa0288290:CDS |
GAACAGAAACAATTCCAAGA+TGG | 0.595445 | 2_3:+33092592 | Msa0288290:CDS |
TAGCAACCAAACCCTACCAA+TGG | 0.597356 | 2_3:+33093263 | Msa0288290:three_prime_UTR |
AACTAGTAAAATGCACATGT+GGG | 0.605763 | 2_3:-33093193 | None:intergenic |
CGATTATACAAGTGTCGCAG+TGG | 0.619842 | 2_3:-33093153 | None:intergenic |
CCTGCATTACAACAATCCAT+TGG | 0.622470 | 2_3:-33093279 | None:intergenic |
AAACAATTCCAAGATGGCCA+TGG | 0.626037 | 2_3:+33092598 | Msa0288290:CDS |
GGAGTGGCAAGCAAGAAGAT+GGG | 0.628166 | 2_3:-33092670 | None:intergenic |
TGGCATGTGCAAGTGCCCCA+AGG | 0.634193 | 2_3:-33093133 | None:intergenic |
ATGGCGGCGACGGAAGCTGG+AGG | 0.636720 | 2_3:+33087578 | Msa0288290:CDS |
CTTACGAGAGCATGAACCGC+CGG | 0.643670 | 2_3:-33092942 | None:intergenic |
GTGGTGTGGGAGCAGAGTTG+GGG | 0.644548 | 2_3:+33087818 | Msa0288290:intron |
GGAGCAGAGTTGGGGCGACG+GGG | 0.647379 | 2_3:+33087826 | Msa0288290:intron |
TCGAGGTGATGAAAGTGATG+GGG | 0.648692 | 2_3:-33092865 | None:intergenic |
ACAGGCTAAAGCGTTTGGAG+TGG | 0.658549 | 2_3:-33092686 | None:intergenic |
CCTTAACCGACCATTCCGAC+CGG | 0.662396 | 2_3:-33087390 | None:intergenic |
AAGACGGGAAAACAGATCAA+CGG | 0.676522 | 2_3:+33087855 | Msa0288290:CDS |
GTTGCGATTGGTGAAGTACG+AGG | 0.684760 | 2_3:+33087321 | Msa0288290:CDS |
CCACCTAAGAAAATGAACCA+TGG | 0.695018 | 2_3:-33092615 | None:intergenic |
ATATGAAGGGTAATTATCGG+CGG | 0.702822 | 2_3:+33087290 | Msa0288290:exon |
GAGTAACAAAACGAAAACGA+AGG | 0.703111 | 2_3:+33087179 | Msa0288290:five_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTGGAATTTTAAAATA+TGG | - | chr2_3:33087078-33087097 | None:intergenic | 10.0% |
!! | TATAGTTCTTATAAAATTTA+AGG | + | chr2_3:33089022-33089041 | Msa0288290:intron | 10.0% |
!!! | TAAAAGTTTATAATTTTGTA+GGG | - | chr2_3:33089136-33089155 | None:intergenic | 10.0% |
!!! | TTAAAAGTTTATAATTTTGT+AGG | - | chr2_3:33089137-33089156 | None:intergenic | 10.0% |
!! | AAAAGTGAATAAATTTATTT+AGG | - | chr2_3:33089168-33089187 | None:intergenic | 10.0% |
!! | AAGAAAAATGTATAAATAAA+GGG | - | chr2_3:33089714-33089733 | None:intergenic | 10.0% |
!! | TAAGAAAAATGTATAAATAA+AGG | - | chr2_3:33089715-33089734 | None:intergenic | 10.0% |
!! | ATTTATTTAGATTAGATGAT+TGG | - | chr2_3:33087049-33087068 | None:intergenic | 15.0% |
!!! | CTTTTCTTTTCTTTTTTTAT+TGG | - | chr2_3:33087093-33087112 | None:intergenic | 15.0% |
!! | AAAAAAAGAAAAGAAAAGAA+TGG | + | chr2_3:33087095-33087114 | Msa0288290:five_prime_UTR | 15.0% |
!! | ATTTAATGTCAAAAATAAGA+AGG | - | chr2_3:33087664-33087683 | None:intergenic | 15.0% |
!!! | TCATCAAAATTTTATCAATT+AGG | - | chr2_3:33088209-33088228 | None:intergenic | 15.0% |
!! | AGATTATTTGGAAAAAAAAA+AGG | - | chr2_3:33088746-33088765 | None:intergenic | 15.0% |
!!! | AATAATTACACTAATTTTGT+AGG | - | chr2_3:33089066-33089085 | None:intergenic | 15.0% |
!! | CAAAATTAGTGTAATTATTA+TGG | + | chr2_3:33089067-33089086 | Msa0288290:intron | 15.0% |
!!! | ACATAAGTTTATTATAGTTT+TGG | + | chr2_3:33089367-33089386 | Msa0288290:intron | 15.0% |
!!! | AACACTTTTTTTTAGAAAAT+GGG | - | chr2_3:33089580-33089599 | None:intergenic | 15.0% |
!! | TAATTAGAGTTATATTGTAT+TGG | - | chr2_3:33089650-33089669 | None:intergenic | 15.0% |
!! | AGAAAAATGTATAAATAAAG+GGG | - | chr2_3:33089713-33089732 | None:intergenic | 15.0% |
!! | AATAGTTAATAAGGATAATT+TGG | - | chr2_3:33090094-33090113 | None:intergenic | 15.0% |
!! | AAATTATCCTTATTAACTAT+TGG | + | chr2_3:33090093-33090112 | Msa0288290:intron | 15.0% |
!!! | CATTTTGAAACAAATTTTTT+TGG | + | chr2_3:33090220-33090239 | Msa0288290:intron | 15.0% |
!!! | GACAATTTTTTTTTTCAAAA+GGG | + | chr2_3:33090428-33090447 | Msa0288290:intron | 15.0% |
!!! | ATTCTAACTTTTTTTTTTTG+AGG | - | chr2_3:33090620-33090639 | None:intergenic | 15.0% |
!! | AAAAAAAAAAAAGAATCTAC+TGG | + | chr2_3:33090734-33090753 | Msa0288290:intron | 15.0% |
!!! | TTTTCCATTAAAATAAAACA+TGG | + | chr2_3:33090763-33090782 | Msa0288290:intron | 15.0% |
!!! | CTTTTTTTACTTTTTTACTT+TGG | - | chr2_3:33091197-33091216 | None:intergenic | 15.0% |
!!! | TATTTGATTTTATATGAATC+CGG | + | chr2_3:33092206-33092225 | Msa0288290:intron | 15.0% |
!!! | ATAAACAGAAACATTTTTTA+GGG | - | chr2_3:33092325-33092344 | None:intergenic | 15.0% |
!!! | AATAAACAGAAACATTTTTT+AGG | - | chr2_3:33092326-33092345 | None:intergenic | 15.0% |
!!! | TTTTTTCTGAGCTTTTTTAA+CGG | + | chr2_3:33087726-33087745 | Msa0288290:intron | 20.0% |
!!! | AATAATTTTAAGGATGGTTT+TGG | + | chr2_3:33087769-33087788 | Msa0288290:intron | 20.0% |
!!! | ATAATTTTAAGGATGGTTTT+GGG | + | chr2_3:33087770-33087789 | Msa0288290:intron | 20.0% |
!! | AGAAATTTATAGTTTCGTAT+TGG | + | chr2_3:33087944-33087963 | Msa0288290:intron | 20.0% |
!! | TTGAAATATTAAAAGAGTCA+TGG | - | chr2_3:33088114-33088133 | None:intergenic | 20.0% |
!! | TGAAATAAGTAATAATGTAG+AGG | + | chr2_3:33088356-33088375 | Msa0288290:intron | 20.0% |
!! | AGATAACTAAATAATATTCG+AGG | + | chr2_3:33088773-33088792 | Msa0288290:intron | 20.0% |
!!! | GAACACTTTTTTTTAGAAAA+TGG | - | chr2_3:33089581-33089600 | None:intergenic | 20.0% |
!!! | TTGAAATAACTCAGTTATTT+TGG | - | chr2_3:33089603-33089622 | None:intergenic | 20.0% |
!! | AAACTAACCAATAGTTAATA+AGG | - | chr2_3:33090103-33090122 | None:intergenic | 20.0% |
!! | TAAAAAGTAATTAATGCACT+TGG | + | chr2_3:33090378-33090397 | Msa0288290:intron | 20.0% |
!! | GCAAAAAAGTCATATAAAAA+TGG | + | chr2_3:33090406-33090425 | Msa0288290:intron | 20.0% |
!!! | GGACAATTTTTTTTTTCAAA+AGG | + | chr2_3:33090427-33090446 | Msa0288290:intron | 20.0% |
!!! | AACAAGTTTTCATCAAAAAA+TGG | - | chr2_3:33090503-33090522 | None:intergenic | 20.0% |
!!! | AACTTTTTTTTTTTGAGGAA+AGG | - | chr2_3:33090615-33090634 | None:intergenic | 20.0% |
!! | CATAATAGAATAGAATCTAT+TGG | + | chr2_3:33090696-33090715 | Msa0288290:intron | 20.0% |
!!! | CTATCCATGTTTTATTTTAA+TGG | - | chr2_3:33090770-33090789 | None:intergenic | 20.0% |
!!! | AATAAATGTTTCTTTTTTCG+AGG | + | chr2_3:33090884-33090903 | Msa0288290:intron | 20.0% |
!! | TATAAGAATGTCAAAATACT+GGG | + | chr2_3:33091007-33091026 | Msa0288290:intron | 20.0% |
!!! | AAGAAATCTTTTCTCAATTA+AGG | + | chr2_3:33091695-33091714 | Msa0288290:intron | 20.0% |
!!! | ATTTGATTTTATATGAATCC+GGG | + | chr2_3:33092207-33092226 | Msa0288290:intron | 20.0% |
!! | CATTTATTAAGCATCTATTT+AGG | - | chr2_3:33092291-33092310 | None:intergenic | 20.0% |
!! | AAACTAAACAAATGATTGAT+TGG | - | chr2_3:33092511-33092530 | None:intergenic | 20.0% |
! | GATAGTATAAATTTAATCGC+CGG | + | chr2_3:33087237-33087256 | Msa0288290:five_prime_UTR | 25.0% |
!!! | TCTTTTCTTTTTTCGTTTTC+CGG | - | chr2_3:33087259-33087278 | None:intergenic | 25.0% |
!! | CGAAAAAAGAAAAGATTTTC+CGG | + | chr2_3:33087264-33087283 | Msa0288290:five_prime_UTR | 25.0% |
! | AGTTCATATTGGATTATTAC+CGG | + | chr2_3:33087371-33087390 | Msa0288290:CDS | 25.0% |
!!! | TTTTTCTGAGCTTTTTTAAC+GGG | + | chr2_3:33087727-33087746 | Msa0288290:intron | 25.0% |
! | ACCATCCTTAAAATTATTAC+CGG | - | chr2_3:33087767-33087786 | None:intergenic | 25.0% |
! | TACAAAGTTAGAGACTAATT+TGG | - | chr2_3:33088073-33088092 | None:intergenic | 25.0% |
! | TAAGAATAGATTACAACGAT+AGG | + | chr2_3:33088252-33088271 | Msa0288290:intron | 25.0% |
! | AATTGAGTAAACCATGAAAT+TGG | - | chr2_3:33088280-33088299 | None:intergenic | 25.0% |
!!! | TCGTTATCCATTTTTCTTAA+CGG | + | chr2_3:33088431-33088450 | Msa0288290:intron | 25.0% |
!!! | ATTTTGACCGTTAAGAAAAA+TGG | - | chr2_3:33088441-33088460 | None:intergenic | 25.0% |
!!! | TTTGTTTTCCTTGTTTATGT+TGG | - | chr2_3:33088553-33088572 | None:intergenic | 25.0% |
! | AGAGATTAAGCTTTCAATAT+TGG | + | chr2_3:33088607-33088626 | Msa0288290:intron | 25.0% |
!! | AAATCAAGTTGCAATCTTAT+TGG | - | chr2_3:33088671-33088690 | None:intergenic | 25.0% |
!!! | CATACATACTTTTGAGTATA+AGG | - | chr2_3:33088721-33088740 | None:intergenic | 25.0% |
! | TATCTTGTGTGTAGATTATT+TGG | - | chr2_3:33088758-33088777 | None:intergenic | 25.0% |
!!! | GATCACTTATTTGCTAATTT+TGG | - | chr2_3:33088921-33088940 | None:intergenic | 25.0% |
!! | TTTTAACAGTCGAAAAGTTT+AGG | + | chr2_3:33089092-33089111 | Msa0288290:intron | 25.0% |
! | TCTTTCAAACTACAATATCA+TGG | + | chr2_3:33089284-33089303 | Msa0288290:intron | 25.0% |
!!! | ATAGTTTTGGAAAGTGTATT+TGG | + | chr2_3:33089380-33089399 | Msa0288290:intron | 25.0% |
! | AAAGTGGAATATATTGTGTT+GGG | - | chr2_3:33089690-33089709 | None:intergenic | 25.0% |
! | AATGATTAAGAGAAAGAGAA+TGG | + | chr2_3:33090060-33090079 | Msa0288290:intron | 25.0% |
!!! | TAAAGAGTGTTTAAGTGTTT+TGG | - | chr2_3:33090542-33090561 | None:intergenic | 25.0% |
! | TCGTGTTGTCAATTTATTAA+AGG | - | chr2_3:33090572-33090591 | None:intergenic | 25.0% |
! | AGTAATTCTAACTTCTTATC+TGG | - | chr2_3:33090648-33090667 | None:intergenic | 25.0% |
! | CTATAAGAATGTCAAAATAC+TGG | + | chr2_3:33091006-33091025 | Msa0288290:intron | 25.0% |
!!! | CTTTAGCAGTTCTAATATTT+TGG | - | chr2_3:33091855-33091874 | None:intergenic | 25.0% |
!!! | TTGTTTTAAGAAGCTAAATG+TGG | - | chr2_3:33091925-33091944 | None:intergenic | 25.0% |
! | TTCTCTCACTATATCAATAA+AGG | - | chr2_3:33092380-33092399 | None:intergenic | 25.0% |
!! | TCAATCATTTGTTTAGTTTC+AGG | + | chr2_3:33092512-33092531 | Msa0288290:intron | 25.0% |
! | ACTCTATTTGACATCAATAT+CGG | + | chr2_3:33092809-33092828 | Msa0288290:CDS | 25.0% |
!!! | TTTCATATTTTTGTTGTCCT+TGG | + | chr2_3:33093116-33093135 | Msa0288290:CDS | 25.0% |
!!! | TTCATATTTTTGTTGTCCTT+GGG | + | chr2_3:33093117-33093136 | Msa0288290:CDS | 25.0% |
TGTTGGGTATAAATAGAGAA+AGG | + | chr2_3:33087155-33087174 | Msa0288290:five_prime_UTR | 30.0% | |
AAACGAAAACGAAGGAATAA+AGG | + | chr2_3:33087187-33087206 | Msa0288290:five_prime_UTR | 30.0% | |
CGAATATGAAGGGTAATTAT+CGG | + | chr2_3:33087287-33087306 | Msa0288290:exon | 30.0% | |
! | TCGTTGTCTTTTAGATATTC+CGG | - | chr2_3:33087352-33087371 | None:intergenic | 30.0% |
AAAAGACAACGAGTTCATAT+TGG | + | chr2_3:33087360-33087379 | Msa0288290:CDS | 30.0% | |
TTGTTCTTGTACAGTCATTT+GGG | + | chr2_3:33087533-33087552 | Msa0288290:intron | 30.0% | |
! | CTTTTTAATATTTGCAGCGA+TGG | + | chr2_3:33087559-33087578 | Msa0288290:CDS | 30.0% |
! | GTTTTCTGTCTAATATCTAC+AGG | + | chr2_3:33087612-33087631 | Msa0288290:CDS | 30.0% |
!!! | TTTTCTGAGCTTTTTTAACG+GGG | + | chr2_3:33087728-33087747 | Msa0288290:intron | 30.0% |
! | CATGACCGGTAATAATTTTA+AGG | + | chr2_3:33087759-33087778 | Msa0288290:intron | 30.0% |
!! | ACCGGTAATAATTTTAAGGA+TGG | + | chr2_3:33087763-33087782 | Msa0288290:intron | 30.0% |
!!! | ATGGTTTTGGGTTTGATTTT+GGG | + | chr2_3:33087782-33087801 | Msa0288290:intron | 30.0% |
! | TTCTCAAAACAAAGTTTTCC+AGG | + | chr2_3:33087884-33087903 | Msa0288290:CDS | 30.0% |
AATGATTAAGAAAGCAAACC+TGG | - | chr2_3:33087905-33087924 | None:intergenic | 30.0% | |
AAAGTTAGAGACTAATTTGG+TGG | - | chr2_3:33088070-33088089 | None:intergenic | 30.0% | |
AGAAATTTCTTACAATGACG+TGG | - | chr2_3:33088143-33088162 | None:intergenic | 30.0% | |
TCCCATTAACATAATTCAGT+TGG | + | chr2_3:33088312-33088331 | Msa0288290:intron | 30.0% | |
GCCAACTGAATTATGTTAAT+GGG | - | chr2_3:33088316-33088335 | None:intergenic | 30.0% | |
TGCCAACTGAATTATGTTAA+TGG | - | chr2_3:33088317-33088336 | None:intergenic | 30.0% | |
TACATATTTCTTGCTTGCTT+TGG | - | chr2_3:33088402-33088421 | None:intergenic | 30.0% | |
!!! | TTTTCAAGTCTTTTCTTCCA+AGG | - | chr2_3:33088505-33088524 | None:intergenic | 30.0% |
AACAAAAAGAGAAACAAGCT+AGG | + | chr2_3:33088567-33088586 | Msa0288290:intron | 30.0% | |
AACGATTGCAATCTTTATGT+AGG | - | chr2_3:33088695-33088714 | None:intergenic | 30.0% | |
!! | ACATACTTTTGAGTATAAGG+AGG | - | chr2_3:33088718-33088737 | None:intergenic | 30.0% |
TTCTCATAGTACTCCTTTAT+CGG | - | chr2_3:33088853-33088872 | None:intergenic | 30.0% | |
!! | TTTGCTAATTTTGGCAGAAA+CGG | - | chr2_3:33088912-33088931 | None:intergenic | 30.0% |
TCAACTCAAACTTTGAATCA+CGG | - | chr2_3:33089492-33089511 | None:intergenic | 30.0% | |
GAAAGTGGAATATATTGTGT+TGG | - | chr2_3:33089691-33089710 | None:intergenic | 30.0% | |
TGTATAAATAAAGGGGAAAG+TGG | - | chr2_3:33089706-33089725 | None:intergenic | 30.0% | |
ATCTGTGTGAAAAACTAAAC+TGG | + | chr2_3:33089735-33089754 | Msa0288290:intron | 30.0% | |
TATTAATAAAGTACACCCTC+CGG | + | chr2_3:33089813-33089832 | Msa0288290:intron | 30.0% | |
! | CTTTTGCTTATATTAGTGAC+CGG | - | chr2_3:33089944-33089963 | None:intergenic | 30.0% |
! | CTTTTGCTTATATTAGTGAC+CGG | + | chr2_3:33089944-33089963 | Msa0288290:intron | 30.0% |
!! | AAACGACACTCATTTTGAAA+CGG | - | chr2_3:33090011-33090030 | None:intergenic | 30.0% |
!!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr2_3:33090012-33090031 | Msa0288290:intron | 30.0% |
!! | AAGGGTTTTATGATTAGAGA+CGG | + | chr2_3:33090446-33090465 | Msa0288290:intron | 30.0% |
ATTACTTACACGACAAAACT+TGG | + | chr2_3:33090662-33090681 | Msa0288290:intron | 30.0% | |
AAAACATGGATAGAAAGAGT+TGG | + | chr2_3:33090777-33090796 | Msa0288290:intron | 30.0% | |
TTTAGTGTATGTTTGAATCC+AGG | + | chr2_3:33090909-33090928 | Msa0288290:intron | 30.0% | |
!!! | TTATCCCTTTTGGAGTTATT+TGG | - | chr2_3:33091093-33091112 | None:intergenic | 30.0% |
!!! | CTCGATTTTTTTATCCCTTT+TGG | - | chr2_3:33091103-33091122 | None:intergenic | 30.0% |
!!! | CTTTTGTCTTAGTTTTGTCT+AGG | - | chr2_3:33091150-33091169 | None:intergenic | 30.0% |
TTGATTCCACTATACATGAA+AGG | + | chr2_3:33091451-33091470 | Msa0288290:intron | 30.0% | |
TATACATGAAAGGATTACCA+CGG | + | chr2_3:33091461-33091480 | Msa0288290:intron | 30.0% | |
TGTTCAGCTATTCTCTTAAA+TGG | - | chr2_3:33091657-33091676 | None:intergenic | 30.0% | |
GAGAAAAGATTTCTTTGTCA+GGG | - | chr2_3:33091690-33091709 | None:intergenic | 30.0% | |
TGAGAAAAGATTTCTTTGTC+AGG | - | chr2_3:33091691-33091710 | None:intergenic | 30.0% | |
GTTTGATTGCATATATAGCA+AGG | - | chr2_3:33091760-33091779 | None:intergenic | 30.0% | |
!! | GTTTATTGATTCATAGTCTG+AGG | - | chr2_3:33092076-33092095 | None:intergenic | 30.0% |
TTGACTATAACATTACTCTC+TGG | - | chr2_3:33092183-33092202 | None:intergenic | 30.0% | |
AGAGAGTAATGTTATAGTCA+AGG | + | chr2_3:33092182-33092201 | Msa0288290:intron | 30.0% | |
!!! | TGGAAGTATCCATTTTTGAT+AGG | + | chr2_3:33092556-33092575 | Msa0288290:CDS | 30.0% |
!!! | GGAAGTATCCATTTTTGATA+GGG | + | chr2_3:33092557-33092576 | Msa0288290:CDS | 30.0% |
CAGAAAAACACGTAGTAAAT+TGG | - | chr2_3:33092771-33092790 | None:intergenic | 30.0% | |
AAGGAATAAAGATGCTCTAA+AGG | - | chr2_3:33092898-33092917 | None:intergenic | 30.0% | |
AGCATCTTTATTCCTTTCAA+TGG | + | chr2_3:33092902-33092921 | Msa0288290:CDS | 30.0% | |
GCATCTTTATTCCTTTCAAT+GGG | + | chr2_3:33092903-33092922 | Msa0288290:CDS | 30.0% | |
AATTGGATATGAGCTCTTAA+TGG | + | chr2_3:33092995-33093014 | Msa0288290:CDS | 30.0% | |
ATTGGATATGAGCTCTTAAT+GGG | + | chr2_3:33092996-33093015 | Msa0288290:CDS | 30.0% | |
!! | TCATATTTTTGTTGTCCTTG+GGG | + | chr2_3:33093118-33093137 | Msa0288290:CDS | 30.0% |
!! | CTTGTATAATCGATTTTCGA+AGG | + | chr2_3:33093164-33093183 | Msa0288290:exon | 30.0% |
AACTAGTAAAATGCACATGT+GGG | - | chr2_3:33093196-33093215 | None:intergenic | 30.0% | |
AAACTAGTAAAATGCACATG+TGG | - | chr2_3:33093197-33093216 | None:intergenic | 30.0% | |
ATTACAACAATCCATTGGTA+GGG | - | chr2_3:33093277-33093296 | None:intergenic | 30.0% | |
CGAACAAACATAGTCATATG+AGG | - | chr2_3:33087134-33087153 | None:intergenic | 35.0% | |
TGACTATGTTTGTTCGTTGT+TGG | + | chr2_3:33087138-33087157 | Msa0288290:five_prime_UTR | 35.0% | |
GACTATGTTTGTTCGTTGTT+GGG | + | chr2_3:33087139-33087158 | Msa0288290:five_prime_UTR | 35.0% | |
GAGTAACAAAACGAAAACGA+AGG | + | chr2_3:33087179-33087198 | Msa0288290:five_prime_UTR | 35.0% | |
TAATTACCCTTCATATTCGC+CGG | - | chr2_3:33087286-33087305 | None:intergenic | 35.0% | |
ATATGAAGGGTAATTATCGG+CGG | + | chr2_3:33087290-33087309 | Msa0288290:exon | 35.0% | |
CATATTGGATTATTACCGGT+CGG | + | chr2_3:33087375-33087394 | Msa0288290:CDS | 35.0% | |
ACAACGAAACGCTAAATGTT+TGG | + | chr2_3:33087440-33087459 | Msa0288290:CDS | 35.0% | |
AACAACAACGATGTCAAACA+TGG | - | chr2_3:33087515-33087534 | None:intergenic | 35.0% | |
GTTGTTCTTGTACAGTCATT+TGG | + | chr2_3:33087532-33087551 | Msa0288290:intron | 35.0% | |
TTTAATATTTGCAGCGATGG+CGG | + | chr2_3:33087562-33087581 | Msa0288290:CDS | 35.0% | |
!!! | GATGGTTTTGGGTTTGATTT+TGG | + | chr2_3:33087781-33087800 | Msa0288290:intron | 35.0% |
!!! | TGGTTTTGGGTTTGATTTTG+GGG | + | chr2_3:33087783-33087802 | Msa0288290:intron | 35.0% |
!! | TAATTTGGTGGTTTGCTCAT+TGG | - | chr2_3:33088058-33088077 | None:intergenic | 35.0% |
AACGATAGGAACCAATTTCA+TGG | + | chr2_3:33088266-33088285 | Msa0288290:intron | 35.0% | |
AACATAATTCAGTTGGCACT+TGG | + | chr2_3:33088319-33088338 | Msa0288290:intron | 35.0% | |
! | CTAGAAAGACTTGCTTGATT+TGG | - | chr2_3:33088476-33088495 | None:intergenic | 35.0% |
GACAAAGTCCAACATAAACA+AGG | + | chr2_3:33088542-33088561 | Msa0288290:intron | 35.0% | |
GAAAGCAATATACGTCACTT+TGG | - | chr2_3:33088643-33088662 | None:intergenic | 35.0% | |
ATAAACCACCAAAATGCACT+AGG | + | chr2_3:33088823-33088842 | Msa0288290:intron | 35.0% | |
!! | TTGCTAATTTTGGCAGAAAC+GGG | - | chr2_3:33088911-33088930 | None:intergenic | 35.0% |
CATAATGATCAATTGTGCAC+AGG | - | chr2_3:33088972-33088991 | None:intergenic | 35.0% | |
! | TTTGGAAAGTGTATTTGGCT+CGG | + | chr2_3:33089385-33089404 | Msa0288290:intron | 35.0% |
CAACTCAAACTTTGAATCAC+GGG | - | chr2_3:33089491-33089510 | None:intergenic | 35.0% | |
AGAAAATGGGTCAGATATTC+CGG | - | chr2_3:33089567-33089586 | None:intergenic | 35.0% | |
! | CTAAACTGGCTCAGATAAAA+CGG | + | chr2_3:33089749-33089768 | Msa0288290:intron | 35.0% |
! | TAAACTGGCTCAGATAAAAC+GGG | + | chr2_3:33089750-33089769 | Msa0288290:intron | 35.0% |
! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr2_3:33090142-33090161 | Msa0288290:intron | 35.0% |
! | TGTGCAGAGTATTAATTGGA+GGG | + | chr2_3:33090146-33090165 | Msa0288290:intron | 35.0% |
!! | AAGCGACACTCATTTTGAAA+CGG | + | chr2_3:33090210-33090229 | Msa0288290:intron | 35.0% |
TTATGATTAGAGACGGAGAT+AGG | + | chr2_3:33090453-33090472 | Msa0288290:intron | 35.0% | |
! | ATGGATAGAAAGAGTTGGTT+TGG | + | chr2_3:33090782-33090801 | Msa0288290:intron | 35.0% |
!!! | GTTGTGTTTTGGTTACAGTT+TGG | + | chr2_3:33090804-33090823 | Msa0288290:intron | 35.0% |
GATGCCAAATAACTCCAAAA+GGG | + | chr2_3:33091086-33091105 | Msa0288290:intron | 35.0% | |
!! | GTGGCTTTTAGTTGTTATCT+TGG | - | chr2_3:33091128-33091147 | None:intergenic | 35.0% |
!!! | TTGTCTTAGTTTTGTCTAGG+TGG | - | chr2_3:33091147-33091166 | None:intergenic | 35.0% |
TACGCTGGAAAAGTTCAATT+TGG | - | chr2_3:33091231-33091250 | None:intergenic | 35.0% | |
GTCTCTTTCTTTCTGATCTT+TGG | - | chr2_3:33091272-33091291 | None:intergenic | 35.0% | |
GATGTTTCTTGCATTGTCTA+CGG | - | chr2_3:33091338-33091357 | None:intergenic | 35.0% | |
!!! | AGGATTTTGAGATACAACCA+AGG | + | chr2_3:33091385-33091404 | Msa0288290:intron | 35.0% |
GGTAATCCTTTCATGTATAG+TGG | - | chr2_3:33091460-33091479 | None:intergenic | 35.0% | |
TGATTTAGAAATACAAGCCG+TGG | - | chr2_3:33091481-33091500 | None:intergenic | 35.0% | |
GACATATTTGAGCTGATCTA+AGG | - | chr2_3:33091512-33091531 | None:intergenic | 35.0% | |
ATCTTCGACTATTGCAATCT+CGG | - | chr2_3:33091595-33091614 | None:intergenic | 35.0% | |
GCATATTATGCAGTGCAATA+TGG | - | chr2_3:33091799-33091818 | None:intergenic | 35.0% | |
! | ATTGATTCATAGTCTGAGGA+GGG | - | chr2_3:33092072-33092091 | None:intergenic | 35.0% |
!! | TATTGATTCATAGTCTGAGG+AGG | - | chr2_3:33092073-33092092 | None:intergenic | 35.0% |
!! | TTCACGTTTGAGACAGATTT+TGG | + | chr2_3:33092536-33092555 | Msa0288290:CDS | 35.0% |
TTCTCTCACCCTATCAAAAA+TGG | - | chr2_3:33092568-33092587 | None:intergenic | 35.0% | |
TTTGATAGGGTGAGAGAATA+TGG | + | chr2_3:33092570-33092589 | Msa0288290:CDS | 35.0% | |
GAACAGAAACAATTCCAAGA+TGG | + | chr2_3:33092592-33092611 | Msa0288290:CDS | 35.0% | |
! | AAAAAACAGGCTAAAGCGTT+TGG | - | chr2_3:33092694-33092713 | None:intergenic | 35.0% |
!!! | AACGCTTTAGCCTGTTTTTT+TGG | + | chr2_3:33092694-33092713 | Msa0288290:CDS | 35.0% |
AATCTAGACGCCAAAAAAAC+AGG | - | chr2_3:33092707-33092726 | None:intergenic | 35.0% | |
GTAGTAAATTGGAGCATAGA+AGG | - | chr2_3:33092760-33092779 | None:intergenic | 35.0% | |
AAATAGAGTAACCTTGCGTA+AGG | - | chr2_3:33092798-33092817 | None:intergenic | 35.0% | |
TGATTATTGCCATTACTCCT+AGG | - | chr2_3:33092836-33092855 | None:intergenic | 35.0% | |
!! | TTCCTTTCAATGGGTTTTTC+AGG | + | chr2_3:33092912-33092931 | Msa0288290:CDS | 35.0% |
TACCTGAAAAACCCATTGAA+AGG | - | chr2_3:33092917-33092936 | None:intergenic | 35.0% | |
!!! | GGGTTTTTCAGGTATTATTC+CGG | + | chr2_3:33092923-33092942 | Msa0288290:CDS | 35.0% |
!!! | TTTTTCAGGTATTATTCCGG+CGG | + | chr2_3:33092926-33092945 | Msa0288290:CDS | 35.0% |
TCGCATATTGTAGTTGCAAT+TGG | + | chr2_3:33092978-33092997 | Msa0288290:CDS | 35.0% | |
TAACTAGAATACCAGAGAGA+TGG | + | chr2_3:33093051-33093070 | Msa0288290:CDS | 35.0% | |
CATTACAACAATCCATTGGT+AGG | - | chr2_3:33093278-33093297 | None:intergenic | 35.0% | |
! | AGATTTTCCGGCGAATATGA+AGG | + | chr2_3:33087276-33087295 | Msa0288290:exon | 40.0% |
! | GATTTTCCGGCGAATATGAA+GGG | + | chr2_3:33087277-33087296 | Msa0288290:exon | 40.0% |
TTCTTGTACAGTCATTTGGG+AGG | + | chr2_3:33087536-33087555 | Msa0288290:intron | 40.0% | |
!!! | GGTTTTGGGTTTGATTTTGG+GGG | + | chr2_3:33087784-33087803 | Msa0288290:intron | 40.0% |
!! | GTTTGATTTTGGGGGTTTGT+TGG | + | chr2_3:33087792-33087811 | Msa0288290:intron | 40.0% |
AAGACGGGAAAACAGATCAA+CGG | + | chr2_3:33087855-33087874 | Msa0288290:CDS | 40.0% | |
!! | GTGCATTTTGGTGGTTTATG+AGG | - | chr2_3:33088822-33088841 | None:intergenic | 40.0% |
! | TTGGAAAGTGTATTTGGCTC+GGG | + | chr2_3:33089386-33089405 | Msa0288290:intron | 40.0% |
AAGGTAAGCTACGAAAACGT+TGG | + | chr2_3:33089409-33089428 | Msa0288290:intron | 40.0% | |
GAAAATGGGTCAGATATTCC+GGG | - | chr2_3:33089566-33089585 | None:intergenic | 40.0% | |
TGCTTATATTAGTGACCGGA+GGG | - | chr2_3:33089948-33089967 | None:intergenic | 40.0% | |
TTGCTTATATTAGTGACCGG+AGG | - | chr2_3:33089947-33089966 | None:intergenic | 40.0% | |
TTGCTTATATTAGTGACCGG+AGG | + | chr2_3:33089947-33089966 | Msa0288290:intron | 40.0% | |
TTATATTAGTGACCGGAGGA+GGG | + | chr2_3:33089951-33089970 | Msa0288290:intron | 40.0% | |
AACTATAATACACCCTCCTC+CGG | - | chr2_3:33089966-33089985 | None:intergenic | 40.0% | |
!!! | GACACTCATTTTGAAACGGA+GGG | - | chr2_3:33090250-33090269 | None:intergenic | 40.0% |
! | GTGTGCAGAGTATTAATTGG+AGG | + | chr2_3:33090145-33090164 | Msa0288290:intron | 40.0% |
!!! | GACACTCATTTTGAAACGGA+GGG | + | chr2_3:33090250-33090269 | Msa0288290:intron | 40.0% |
!!! | GAGTTGGTTTGGTTGTGTTT+TGG | + | chr2_3:33090793-33090812 | Msa0288290:intron | 40.0% |
TGTATGTTTGAATCCAGGTC+AGG | + | chr2_3:33090914-33090933 | Msa0288290:intron | 40.0% | |
CTTCAAAAGAAAACCTGACC+TGG | - | chr2_3:33090930-33090949 | None:intergenic | 40.0% | |
!! | GGTCAGGTTTTCTTTTGAAG+AGG | + | chr2_3:33090930-33090949 | Msa0288290:intron | 40.0% |
!!! | TGTTGTTTTTGGTGCTCAGA+GGG | - | chr2_3:33091061-33091080 | None:intergenic | 40.0% |
!!! | TTGTTGTTTTTGGTGCTCAG+AGG | - | chr2_3:33091062-33091081 | None:intergenic | 40.0% |
! | TTTGGAGTTATTTGGCATCC+TGG | - | chr2_3:33091085-33091104 | None:intergenic | 40.0% |
GGATGCCAAATAACTCCAAA+AGG | + | chr2_3:33091085-33091104 | Msa0288290:intron | 40.0% | |
!! | ACTTTGGAGCTTTCACTCTT+TGG | - | chr2_3:33091181-33091200 | None:intergenic | 40.0% |
TTTGTTCGTGATCAATACGC+TGG | - | chr2_3:33091246-33091265 | None:intergenic | 40.0% | |
CAGAAAGAAAGAGACACCTT+AGG | + | chr2_3:33091277-33091296 | Msa0288290:intron | 40.0% | |
ACTACTACTCCGAAACCAAA+CGG | + | chr2_3:33091359-33091378 | Msa0288290:intron | 40.0% | |
! | AATCCTAGTCCGTTTGGTTT+CGG | - | chr2_3:33091371-33091390 | None:intergenic | 40.0% |
TCTCAAAATCCTAGTCCGTT+TGG | - | chr2_3:33091377-33091396 | None:intergenic | 40.0% | |
GCGCTTTAGTTGTGTGTTAT+CGG | - | chr2_3:33091429-33091448 | None:intergenic | 40.0% | |
AGAGTGAATTATTGGCAGCA+AGG | - | chr2_3:33091549-33091568 | None:intergenic | 40.0% | |
TAGCCTCGAGAGTGAATTAT+TGG | - | chr2_3:33091557-33091576 | None:intergenic | 40.0% | |
TTGCAATCTCGGGAATCTAT+GGG | - | chr2_3:33091584-33091603 | None:intergenic | 40.0% | |
ATTGCAATCTCGGGAATCTA+TGG | - | chr2_3:33091585-33091604 | None:intergenic | 40.0% | |
TCTTCGACTATTGCAATCTC+GGG | - | chr2_3:33091594-33091613 | None:intergenic | 40.0% | |
AAAGATTTCTTTGTCAGGGC+AGG | - | chr2_3:33091686-33091705 | None:intergenic | 40.0% | |
TTGCATATATAGCAAGGTGC+TGG | - | chr2_3:33091754-33091773 | None:intergenic | 40.0% | |
! | GTTTTGTCTGTAACAGATGC+AGG | - | chr2_3:33091821-33091840 | None:intergenic | 40.0% |
!! | TTCAAGTTGACAGCAAGAAG+AGG | - | chr2_3:33091887-33091906 | None:intergenic | 40.0% |
TTGATTCATAGTCTGAGGAG+GGG | - | chr2_3:33092071-33092090 | None:intergenic | 40.0% | |
GTCTGAAAAATCCGAAGTTG+CGG | - | chr2_3:33092109-33092128 | None:intergenic | 40.0% | |
TTAAATCCTAGAGCGTGTCT+CGG | - | chr2_3:33092157-33092176 | None:intergenic | 40.0% | |
AAACAATTCCAAGATGGCCA+TGG | + | chr2_3:33092598-33092617 | Msa0288290:CDS | 40.0% | |
AAAATGAACCATGGCCATCT+TGG | - | chr2_3:33092609-33092628 | None:intergenic | 40.0% | |
! | TGGCCATGGTTCATTTTCTT+AGG | + | chr2_3:33092612-33092631 | Msa0288290:CDS | 40.0% |
CCACCTAAGAAAATGAACCA+TGG | - | chr2_3:33092618-33092637 | None:intergenic | 40.0% | |
! | CCATGGTTCATTTTCTTAGG+TGG | + | chr2_3:33092615-33092634 | Msa0288290:CDS | 40.0% |
! | TGGTTCATTTTCTTAGGTGG+AGG | + | chr2_3:33092618-33092637 | Msa0288290:CDS | 40.0% |
!! | GTGTTGCTTACTTTGCAGTT+CGG | + | chr2_3:33092644-33092663 | Msa0288290:CDS | 40.0% |
! | TTTTGGCGTCTAGATTATGC+TGG | + | chr2_3:33092711-33092730 | Msa0288290:CDS | 40.0% |
! | TTTTCTGCAATCCTTACGCA+AGG | + | chr2_3:33092784-33092803 | Msa0288290:CDS | 40.0% |
TTGACATCAATATCGGTCCT+AGG | + | chr2_3:33092816-33092835 | Msa0288290:CDS | 40.0% | |
AATATCGGTCCTAGGAGTAA+TGG | + | chr2_3:33092824-33092843 | Msa0288290:CDS | 40.0% | |
! | TGAAAGTGATGGGGAAAGAA+GGG | - | chr2_3:33092859-33092878 | None:intergenic | 40.0% |
! | ATGAAAGTGATGGGGAAAGA+AGG | - | chr2_3:33092860-33092879 | None:intergenic | 40.0% |
ATCGAGGTGATGAAAGTGAT+GGG | - | chr2_3:33092869-33092888 | None:intergenic | 40.0% | |
AATCGAGGTGATGAAAGTGA+TGG | - | chr2_3:33092870-33092889 | None:intergenic | 40.0% | |
TTCATGCTCTCGTAAGCAAT+TGG | + | chr2_3:33092949-33092968 | Msa0288290:CDS | 40.0% | |
TCATGCTCTCGTAAGCAATT+GGG | + | chr2_3:33092950-33092969 | Msa0288290:CDS | 40.0% | |
ATGGGCATTCTATATGCAAC+AGG | + | chr2_3:33093014-33093033 | Msa0288290:CDS | 40.0% | |
AACAATCCATTGGTAGGGTT+TGG | - | chr2_3:33093272-33093291 | None:intergenic | 40.0% | |
CCTGCATTACAACAATCCAT+TGG | - | chr2_3:33093282-33093301 | None:intergenic | 40.0% | |
!! | CCAATGGATTGTTGTAATGC+AGG | + | chr2_3:33093279-33093298 | Msa0288290:three_prime_UTR | 40.0% |
! | AGGAATAAAGGTGCAAGCGA+CGG | + | chr2_3:33087199-33087218 | Msa0288290:five_prime_UTR | 45.0% |
TGGATTATTACCGGTCGGAA+TGG | + | chr2_3:33087380-33087399 | Msa0288290:CDS | 45.0% | |
TTATTACCGGTCGGAATGGT+CGG | + | chr2_3:33087384-33087403 | Msa0288290:CDS | 45.0% | |
! | AGTCTTTCTAGCACAAGCCT+TGG | + | chr2_3:33088485-33088504 | Msa0288290:intron | 45.0% |
! | GATCACCTAGTGCATTTTGG+TGG | - | chr2_3:33088831-33088850 | None:intergenic | 45.0% |
! | TCGGATCACCTAGTGCATTT+TGG | - | chr2_3:33088834-33088853 | None:intergenic | 45.0% |
TGCACTAGGTGATCCGATAA+AGG | + | chr2_3:33088837-33088856 | Msa0288290:intron | 45.0% | |
CAATTGTGCACAGGAGATTG+TGG | - | chr2_3:33088963-33088982 | None:intergenic | 45.0% | |
!! | AAAGTGTATTTGGCTCGGGA+AGG | + | chr2_3:33089390-33089409 | Msa0288290:intron | 45.0% |
TTGGCCTATCCAGGATAAGT+GGG | + | chr2_3:33089428-33089447 | Msa0288290:intron | 45.0% | |
GGAAGAACAGAGACTACATG+GGG | - | chr2_3:33089470-33089489 | None:intergenic | 45.0% | |
GGGAAGAACAGAGACTACAT+GGG | - | chr2_3:33089471-33089490 | None:intergenic | 45.0% | |
CTTATATTAGTGACCGGAGG+AGG | + | chr2_3:33089950-33089969 | Msa0288290:intron | 45.0% | |
!!! | CGACACTCATTTTGAAACGG+AGG | - | chr2_3:33090249-33090268 | None:intergenic | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | + | chr2_3:33090249-33090268 | Msa0288290:intron | 45.0% |
!!! | GTTGTTTTTGGTGCTCAGAG+GGG | - | chr2_3:33091060-33091079 | None:intergenic | 45.0% |
GAGCACCAAAAACAACAACC+AGG | + | chr2_3:33091064-33091083 | Msa0288290:intron | 45.0% | |
!!! | GGCATCCTGGTTGTTGTTTT+TGG | - | chr2_3:33091072-33091091 | None:intergenic | 45.0% |
! | TGGCTTGGAGTAAGATCCTA+AGG | - | chr2_3:33091296-33091315 | None:intergenic | 45.0% |
GTCTTCCAGTAACTCGTTAG+TGG | - | chr2_3:33091316-33091335 | None:intergenic | 45.0% | |
!!! | TCGCGTTTTGAGAGATTCCT+TGG | - | chr2_3:33091405-33091424 | None:intergenic | 45.0% |
CTGCCAATAATTCACTCTCG+AGG | + | chr2_3:33091551-33091570 | Msa0288290:intron | 45.0% | |
TGCAATCTCGGGAATCTATG+GGG | - | chr2_3:33091583-33091602 | None:intergenic | 45.0% | |
AAGTTGACAGCAAGAAGAGG+AGG | - | chr2_3:33091884-33091903 | None:intergenic | 45.0% | |
!! | TGCTTTTGGTTGGAAGCAGA+GGG | - | chr2_3:33091964-33091983 | None:intergenic | 45.0% |
TGATTCATAGTCTGAGGAGG+GGG | - | chr2_3:33092070-33092089 | None:intergenic | 45.0% | |
CACGTTTGATCAACTTGACC+CGG | - | chr2_3:33092228-33092247 | None:intergenic | 45.0% | |
!! | GGTCAAGTTGATCAAACGTG+CGG | + | chr2_3:33092228-33092247 | Msa0288290:intron | 45.0% |
TCGAGGTGATGAAAGTGATG+GGG | - | chr2_3:33092868-33092887 | None:intergenic | 45.0% | |
!! | GCTCTAAAGGTTCGAAATCG+AGG | - | chr2_3:33092885-33092904 | None:intergenic | 45.0% |
CATGCTCTCGTAAGCAATTG+GGG | + | chr2_3:33092951-33092970 | Msa0288290:CDS | 45.0% | |
CCTGCAATATCAAATGCTCC+AGG | - | chr2_3:33093080-33093099 | None:intergenic | 45.0% | |
! | CCTGGAGCATTTGATATTGC+AGG | + | chr2_3:33093077-33093096 | Msa0288290:CDS | 45.0% |
! | CGATTATACAAGTGTCGCAG+TGG | - | chr2_3:33093156-33093175 | None:intergenic | 45.0% |
TAGCAACCAAACCCTACCAA+TGG | + | chr2_3:33093263-33093282 | Msa0288290:three_prime_UTR | 45.0% | |
!!! | TTAAAATTATTTTTGAATTT+TGG | + | chr2_3:33092450-33092469 | Msa0288290:intron | 5.0% |
! | GGAATAAAGGTGCAAGCGAC+GGG | + | chr2_3:33087200-33087219 | Msa0288290:five_prime_UTR | 50.0% |
GTTGCGATTGGTGAAGTACG+AGG | + | chr2_3:33087321-33087340 | Msa0288290:CDS | 50.0% | |
GGTGAAGTACGAGGAATTGC+CGG | + | chr2_3:33087330-33087349 | Msa0288290:CDS | 50.0% | |
! | CTTTGTTCAGCGTTTTCGCG+TGG | + | chr2_3:33087416-33087435 | Msa0288290:CDS | 50.0% |
!! | TTTGGGGGTTTGTTGGTGTG+TGG | + | chr2_3:33087799-33087818 | Msa0288290:intron | 50.0% |
!! | GGTTTGTTGGTGTGTGGTGT+GGG | + | chr2_3:33087805-33087824 | Msa0288290:intron | 50.0% |
! | ACGAAAACGTTGGCCTATCC+AGG | + | chr2_3:33089419-33089438 | Msa0288290:intron | 50.0% |
! | GTTGGCCTATCCAGGATAAG+TGG | + | chr2_3:33089427-33089446 | Msa0288290:intron | 50.0% |
CTGACCCACTTATCCTGGAT+AGG | - | chr2_3:33089435-33089454 | None:intergenic | 50.0% | |
CTAAGCTGACCCACTTATCC+TGG | - | chr2_3:33089440-33089459 | None:intergenic | 50.0% | |
CAGAGACTACATGGGGAGAT+GGG | - | chr2_3:33089463-33089482 | None:intergenic | 50.0% | |
ACAGAGACTACATGGGGAGA+TGG | - | chr2_3:33089464-33089483 | None:intergenic | 50.0% | |
CGGGAAGAACAGAGACTACA+TGG | - | chr2_3:33089472-33089491 | None:intergenic | 50.0% | |
ATGGGTCAGATATTCCGGGA+CGG | - | chr2_3:33089562-33089581 | None:intergenic | 50.0% | |
CTGGCTCAGATAAAACGGGA+CGG | + | chr2_3:33089754-33089773 | Msa0288290:intron | 50.0% | |
CCAGTAACTCGTTAGTGGCT+TGG | - | chr2_3:33091311-33091330 | None:intergenic | 50.0% | |
CCAAGCCACTAACGAGTTAC+TGG | + | chr2_3:33091308-33091327 | Msa0288290:intron | 50.0% | |
! | ACTCCGAAACCAAACGGACT+AGG | + | chr2_3:33091365-33091384 | Msa0288290:intron | 50.0% |
!! | CAGCAAGGTGCATTGATTCG+AGG | - | chr2_3:33091534-33091553 | None:intergenic | 50.0% |
!! | CAAGGTGCTGGCAGCAATAT+TGG | - | chr2_3:33091742-33091761 | None:intergenic | 50.0% |
ACAGCAAGAAGAGGAGGCTT+TGG | - | chr2_3:33091878-33091897 | None:intergenic | 50.0% | |
!! | GTGCTTTTGGTTGGAAGCAG+AGG | - | chr2_3:33091965-33091984 | None:intergenic | 50.0% |
! | TAGGGTCTGGTGCTTTTGGT+TGG | - | chr2_3:33091974-33091993 | None:intergenic | 50.0% |
! | CTCATAGGGTCTGGTGCTTT+TGG | - | chr2_3:33091978-33091997 | None:intergenic | 50.0% |
GTAGAGGGGACGTTCTCATA+GGG | - | chr2_3:33091992-33092011 | None:intergenic | 50.0% | |
TGTAGAGGGGACGTTCTCAT+AGG | - | chr2_3:33091993-33092012 | None:intergenic | 50.0% | |
AATCCGAAGTTGCGGCAGTT+TGG | - | chr2_3:33092101-33092120 | None:intergenic | 50.0% | |
ATGTTACCGAGACACGCTCT+AGG | + | chr2_3:33092148-33092167 | Msa0288290:intron | 50.0% | |
AAACGTGCGGTAGAAAGCCA+CGG | + | chr2_3:33092241-33092260 | Msa0288290:intron | 50.0% | |
AAAGCCACGGAAACGTCATG+CGG | + | chr2_3:33092254-33092273 | Msa0288290:intron | 50.0% | |
GGAGTGGCAAGCAAGAAGAT+GGG | - | chr2_3:33092673-33092692 | None:intergenic | 50.0% | |
TGGAGTGGCAAGCAAGAAGA+TGG | - | chr2_3:33092674-33092693 | None:intergenic | 50.0% | |
! | ACAGGCTAAAGCGTTTGGAG+TGG | - | chr2_3:33092689-33092708 | None:intergenic | 50.0% |
ATACCAGAGAGATGGAAGCC+TGG | + | chr2_3:33093059-33093078 | Msa0288290:CDS | 50.0% | |
GCGGAAGAGAACGTTGCGAT+TGG | + | chr2_3:33087309-33087328 | Msa0288290:CDS | 55.0% | |
CCTTAACCGACCATTCCGAC+CGG | - | chr2_3:33087393-33087412 | None:intergenic | 55.0% | |
ACGGGGCAAGTTAGCATGAC+CGG | + | chr2_3:33087745-33087764 | Msa0288290:intron | 55.0% | |
!! | GGGTTTGTTGGTGTGTGGTG+TGG | + | chr2_3:33087804-33087823 | Msa0288290:intron | 55.0% |
TGTGGTGTGGGAGCAGAGTT+GGG | + | chr2_3:33087817-33087836 | Msa0288290:intron | 55.0% | |
AACGTATACTCCCTCCGTCC+CGG | + | chr2_3:33089545-33089564 | Msa0288290:intron | 55.0% | |
GTCAGATATTCCGGGACGGA+GGG | - | chr2_3:33089558-33089577 | None:intergenic | 55.0% | |
GCTCAGATAAAACGGGACGG+AGG | + | chr2_3:33089757-33089776 | Msa0288290:intron | 55.0% | |
!! | GGTGCTGGCAGCAATATTGG+TGG | - | chr2_3:33091739-33091758 | None:intergenic | 55.0% |
!! | TGCTGCTGGCTGTGCTGTTT+CGG | - | chr2_3:33092025-33092044 | None:intergenic | 55.0% |
TGGTGCTTTCTTGCTGCTGC+TGG | - | chr2_3:33092039-33092058 | None:intergenic | 55.0% | |
CTGCCAAACTGCCGCAACTT+CGG | + | chr2_3:33092095-33092114 | Msa0288290:intron | 55.0% | |
GAAACCGCATGACGTTTCCG+TGG | - | chr2_3:33092261-33092280 | None:intergenic | 55.0% | |
! | CTTACGAGAGCATGAACCGC+CGG | - | chr2_3:33092945-33092964 | None:intergenic | 55.0% |
CCGGTCGGAATGGTCGGTTA+AGG | + | chr2_3:33087390-33087409 | Msa0288290:CDS | 60.0% | |
! | ATTTGCAGCGATGGCGGCGA+CGG | + | chr2_3:33087568-33087587 | Msa0288290:CDS | 60.0% |
GTGTGGTGTGGGAGCAGAGT+TGG | + | chr2_3:33087816-33087835 | Msa0288290:intron | 60.0% | |
GTGGTGTGGGAGCAGAGTTG+GGG | + | chr2_3:33087818-33087837 | Msa0288290:intron | 60.0% | |
GGTCAGATATTCCGGGACGG+AGG | - | chr2_3:33089559-33089578 | None:intergenic | 60.0% | |
GGGGACGTTCTCATAGGGTC+TGG | - | chr2_3:33091987-33092006 | None:intergenic | 60.0% | |
GAGAACGTCCCCTCTACAGC+AGG | + | chr2_3:33091995-33092014 | Msa0288290:intron | 60.0% | |
TTCGGTCGGCCTGCTGTAGA+GGG | - | chr2_3:33092007-33092026 | None:intergenic | 60.0% | |
TTTCGGTCGGCCTGCTGTAG+AGG | - | chr2_3:33092008-33092027 | None:intergenic | 60.0% | |
!! | GCTGGCTGTGCTGTTTCGGT+CGG | - | chr2_3:33092021-33092040 | None:intergenic | 60.0% |
GCTCCAGGCTTCCATCTCTC+TGG | - | chr2_3:33093065-33093084 | None:intergenic | 60.0% | |
TGGCATGTGCAAGTGCCCCA+AGG | - | chr2_3:33093136-33093155 | None:intergenic | 60.0% | |
ACGGAAGCTGGAGGAGGAGG+AGG | + | chr2_3:33087587-33087606 | Msa0288290:CDS | 65.0% | |
GAAGCTGGAGGAGGAGGAGG+TGG | + | chr2_3:33087590-33087609 | Msa0288290:CDS | 65.0% | |
TGGGAGCAGAGTTGGGGCGA+CGG | + | chr2_3:33087824-33087843 | Msa0288290:intron | 65.0% | |
GGCGACGGGGTCGTTGAAGA+CGG | + | chr2_3:33087839-33087858 | Msa0288290:CDS | 65.0% | |
GCGACGGGGTCGTTGAAGAC+GGG | + | chr2_3:33087840-33087859 | Msa0288290:CDS | 65.0% | |
TCGGTCGGCCTGCTGTAGAG+GGG | - | chr2_3:33092006-33092025 | None:intergenic | 65.0% | |
CTGAGGAGGGGGTCTGTCTG+TGG | - | chr2_3:33092059-33092078 | None:intergenic | 65.0% | |
ATGGCGGCGACGGAAGCTGG+AGG | + | chr2_3:33087578-33087597 | Msa0288290:CDS | 70.0% | |
GCGACGGAAGCTGGAGGAGG+AGG | + | chr2_3:33087584-33087603 | Msa0288290:CDS | 70.0% | |
GGGAGCAGAGTTGGGGCGAC+GGG | + | chr2_3:33087825-33087844 | Msa0288290:intron | 70.0% | |
GGAGCAGAGTTGGGGCGACG+GGG | + | chr2_3:33087826-33087845 | Msa0288290:intron | 70.0% | |
! | GCGATGGCGGCGACGGAAGC+TGG | + | chr2_3:33087575-33087594 | Msa0288290:CDS | 75.0% |
GCGGCGACGGAAGCTGGAGG+AGG | + | chr2_3:33087581-33087600 | Msa0288290:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 33087041 | 33093342 | 33087041 | ID=Msa0288290;Name=Msa0288290 |
chr2_3 | mRNA | 33087041 | 33093342 | 33087041 | ID=Msa0288290-mRNA-1;Parent=Msa0288290;Name=Msa0288290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=251|1|1|1|0.66|0.75|4|170|325 |
chr2_3 | exon | 33087041 | 33087464 | 33087041 | ID=Msa0288290-mRNA-1:exon:10910;Parent=Msa0288290-mRNA-1 |
chr2_3 | exon | 33087547 | 33087633 | 33087547 | ID=Msa0288290-mRNA-1:exon:10911;Parent=Msa0288290-mRNA-1 |
chr2_3 | exon | 33087833 | 33087905 | 33087833 | ID=Msa0288290-mRNA-1:exon:10912;Parent=Msa0288290-mRNA-1 |
chr2_3 | exon | 33092528 | 33093342 | 33092528 | ID=Msa0288290-mRNA-1:exon:10913;Parent=Msa0288290-mRNA-1 |
chr2_3 | five_prime_UTR | 33087041 | 33087291 | 33087041 | ID=Msa0288290-mRNA-1:five_prime_utr;Parent=Msa0288290-mRNA-1 |
chr2_3 | CDS | 33087292 | 33087464 | 33087292 | ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1 |
chr2_3 | CDS | 33087547 | 33087633 | 33087547 | ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1 |
chr2_3 | CDS | 33087833 | 33087905 | 33087833 | ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1 |
chr2_3 | CDS | 33092528 | 33093172 | 33092528 | ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1 |
chr2_3 | three_prime_UTR | 33093173 | 33093342 | 33093173 | ID=Msa0288290-mRNA-1:three_prime_utr;Parent=Msa0288290-mRNA-1 |
Gene Sequence |
Protein sequence |