AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288290 MtrunA17_Chr2g0305481 97.231 325 8 1 1 325 1 324 0.0 641
Msa0288290 MtrunA17_Chr4g0064481 49.085 328 146 3 4 324 38 351 6.16e-107 316
Msa0288290 MtrunA17_Chr5g0401021 42.776 353 157 4 7 325 28 369 1.48e-89 272
Msa0288290 MtrunA17_Chr3g0134921 43.099 355 166 6 7 325 32 386 4.29e-88 269
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288290 AT4G30850.2 56.845 336 125 5 1 325 19 345 1.76e-134 386
Msa0288290 AT4G30850.1 56.845 336 125 5 1 325 19 345 1.76e-134 386
Msa0288290 AT2G24150.1 56.051 314 123 4 12 325 33 331 2.22e-123 358
Msa0288290 AT5G20270.1 46.605 324 127 1 2 325 45 322 5.71e-101 300
Msa0288290 AT2G24150.2 67.016 191 63 0 135 325 52 242 5.01e-95 282
Msa0288290 AT4G37680.3 42.210 353 175 4 2 325 28 380 8.91e-92 279
Msa0288290 AT4G37680.4 42.210 353 175 4 2 325 28 380 8.91e-92 279
Msa0288290 AT4G37680.1 42.210 353 175 4 2 325 23 375 1.47e-91 278
Msa0288290 AT4G37680.5 42.210 353 175 4 2 325 23 375 1.47e-91 278
Msa0288290 AT4G37680.2 42.210 353 175 4 2 325 23 375 1.47e-91 278
Msa0288290 AT4G38320.1 42.045 352 175 4 2 324 23 374 6.38e-90 273
Msa0288290 AT2G40710.1 56.627 83 36 0 243 325 1 83 1.72e-26 100
Msa0288290 AT4G38290.1 68.421 57 18 0 269 325 42 98 2.86e-21 87.4

Find 91 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGTTTGAGACAGATTT+TGG 0.180770 2_3:+33092536 Msa0288290:CDS
TTTGATAGGGTGAGAGAATA+TGG 0.256564 2_3:+33092570 Msa0288290:CDS
AATTGGATATGAGCTCTTAA+TGG 0.270809 2_3:+33092995 Msa0288290:CDS
GTTGTTCTTGTACAGTCATT+TGG 0.300362 2_3:+33087532 Msa0288290:intron
AGCATCTTTATTCCTTTCAA+TGG 0.327223 2_3:+33092902 Msa0288290:CDS
TTGTTCTTGTACAGTCATTT+GGG 0.334474 2_3:+33087533 Msa0288290:intron
AAAAGACAACGAGTTCATAT+TGG 0.344022 2_3:+33087360 Msa0288290:CDS
GCGATGGCGGCGACGGAAGC+TGG 0.345791 2_3:+33087575 Msa0288290:CDS
AACAATCCATTGGTAGGGTT+TGG 0.348659 2_3:-33093269 None:intergenic
TTCATGCTCTCGTAAGCAAT+TGG 0.354615 2_3:+33092949 Msa0288290:CDS
ACTCTATTTGACATCAATAT+CGG 0.361427 2_3:+33092809 Msa0288290:CDS
ATTTATTTAGATTAGATGAT+TGG 0.363801 2_3:-33087046 None:intergenic
TGACTATGTTTGTTCGTTGT+TGG 0.367410 2_3:+33087138 Msa0288290:five_prime_UTR
GGGAGCAGAGTTGGGGCGAC+GGG 0.368194 2_3:+33087825 Msa0288290:intron
CCTGGAGCATTTGATATTGC+AGG 0.369519 2_3:+33093077 Msa0288290:CDS
AGTTCATATTGGATTATTAC+CGG 0.383152 2_3:+33087371 Msa0288290:CDS
AAACGAAAACGAAGGAATAA+AGG 0.390532 2_3:+33087187 Msa0288290:five_prime_UTR
GACTATGTTTGTTCGTTGTT+GGG 0.392950 2_3:+33087139 Msa0288290:five_prime_UTR
TCGCATATTGTAGTTGCAAT+TGG 0.397993 2_3:+33092978 Msa0288290:CDS
AAAATGAACCATGGCCATCT+TGG 0.399515 2_3:-33092606 None:intergenic
TCATGCTCTCGTAAGCAATT+GGG 0.408002 2_3:+33092950 Msa0288290:CDS
GCGACGGAAGCTGGAGGAGG+AGG 0.408012 2_3:+33087584 Msa0288290:CDS
ACAACGAAACGCTAAATGTT+TGG 0.429326 2_3:+33087440 Msa0288290:CDS
ATTGGATATGAGCTCTTAAT+GGG 0.433906 2_3:+33092996 Msa0288290:CDS
ACGGAAGCTGGAGGAGGAGG+AGG 0.442291 2_3:+33087587 Msa0288290:CDS
GGTGAAGTACGAGGAATTGC+CGG 0.443305 2_3:+33087330 Msa0288290:CDS
TGGGAGCAGAGTTGGGGCGA+CGG 0.450948 2_3:+33087824 Msa0288290:intron
AGATTAGATGATTGGTTTCG+TGG 0.457726 2_3:-33087038 None:intergenic
GGAATAAAGGTGCAAGCGAC+GGG 0.459408 2_3:+33087200 Msa0288290:five_prime_UTR
ATGGGCATTCTATATGCAAC+AGG 0.462499 2_3:+33093014 Msa0288290:CDS
GCATCTTTATTCCTTTCAAT+GGG 0.465831 2_3:+33092903 Msa0288290:CDS
CGAATATGAAGGGTAATTAT+CGG 0.467352 2_3:+33087287 Msa0288290:exon
GTAGTAAATTGGAGCATAGA+AGG 0.468904 2_3:-33092757 None:intergenic
TGGAGTGGCAAGCAAGAAGA+TGG 0.469300 2_3:-33092671 None:intergenic
CCGGTCGGAATGGTCGGTTA+AGG 0.472175 2_3:+33087390 Msa0288290:CDS
GTGTTGCTTACTTTGCAGTT+CGG 0.481770 2_3:+33092644 Msa0288290:CDS
TGATTATTGCCATTACTCCT+AGG 0.484435 2_3:-33092833 None:intergenic
GCGGCGACGGAAGCTGGAGG+AGG 0.486075 2_3:+33087581 Msa0288290:CDS
CATTACAACAATCCATTGGT+AGG 0.487060 2_3:-33093275 None:intergenic
ATGAAAGTGATGGGGAAAGA+AGG 0.490228 2_3:-33092857 None:intergenic
TTTAATATTTGCAGCGATGG+CGG 0.490595 2_3:+33087562 Msa0288290:CDS
TGGATTATTACCGGTCGGAA+TGG 0.492532 2_3:+33087380 Msa0288290:CDS
AAGGAATAAAGATGCTCTAA+AGG 0.495018 2_3:-33092895 None:intergenic
GAAGCTGGAGGAGGAGGAGG+TGG 0.496794 2_3:+33087590 Msa0288290:CDS
GCGACGGGGTCGTTGAAGAC+GGG 0.498294 2_3:+33087840 Msa0288290:CDS
AGGAATAAAGGTGCAAGCGA+CGG 0.501490 2_3:+33087199 Msa0288290:five_prime_UTR
GCTCCAGGCTTCCATCTCTC+TGG 0.506779 2_3:-33093062 None:intergenic
TTATTACCGGTCGGAATGGT+CGG 0.518312 2_3:+33087384 Msa0288290:CDS
TTGACATCAATATCGGTCCT+AGG 0.520515 2_3:+33092816 Msa0288290:CDS
ATACCAGAGAGATGGAAGCC+TGG 0.520590 2_3:+33093059 Msa0288290:CDS
CGAACAAACATAGTCATATG+AGG 0.522377 2_3:-33087131 None:intergenic
ATTTGCAGCGATGGCGGCGA+CGG 0.523006 2_3:+33087568 Msa0288290:CDS
GGCGACGGGGTCGTTGAAGA+CGG 0.536340 2_3:+33087839 Msa0288290:CDS
CCAATGGATTGTTGTAATGC+AGG 0.537390 2_3:+33093279 Msa0288290:three_prime_UTR
GATAGTATAAATTTAATCGC+CGG 0.538820 2_3:+33087237 Msa0288290:five_prime_UTR
ATCGAGGTGATGAAAGTGAT+GGG 0.541396 2_3:-33092866 None:intergenic
TAATTACCCTTCATATTCGC+CGG 0.541667 2_3:-33087283 None:intergenic
AAACTAGTAAAATGCACATG+TGG 0.545575 2_3:-33093194 None:intergenic
AATATCGGTCCTAGGAGTAA+TGG 0.546762 2_3:+33092824 Msa0288290:CDS
GCGGAAGAGAACGTTGCGAT+TGG 0.550524 2_3:+33087309 Msa0288290:CDS
ATTACAACAATCCATTGGTA+GGG 0.555645 2_3:-33093274 None:intergenic
AAATAGAGTAACCTTGCGTA+AGG 0.563549 2_3:-33092795 None:intergenic
CATGCTCTCGTAAGCAATTG+GGG 0.565438 2_3:+33092951 Msa0288290:CDS
TGTTGGGTATAAATAGAGAA+AGG 0.573206 2_3:+33087155 Msa0288290:five_prime_UTR
TTCTTGTACAGTCATTTGGG+AGG 0.573521 2_3:+33087536 Msa0288290:intron
TAACTAGAATACCAGAGAGA+TGG 0.576093 2_3:+33093051 Msa0288290:CDS
CCTGCAATATCAAATGCTCC+AGG 0.579712 2_3:-33093077 None:intergenic
AATCGAGGTGATGAAAGTGA+TGG 0.582826 2_3:-33092867 None:intergenic
TGAAAGTGATGGGGAAAGAA+GGG 0.590589 2_3:-33092856 None:intergenic
GCTCTAAAGGTTCGAAATCG+AGG 0.591484 2_3:-33092882 None:intergenic
CATATTGGATTATTACCGGT+CGG 0.594477 2_3:+33087375 Msa0288290:CDS
GAACAGAAACAATTCCAAGA+TGG 0.595445 2_3:+33092592 Msa0288290:CDS
TAGCAACCAAACCCTACCAA+TGG 0.597356 2_3:+33093263 Msa0288290:three_prime_UTR
AACTAGTAAAATGCACATGT+GGG 0.605763 2_3:-33093193 None:intergenic
CGATTATACAAGTGTCGCAG+TGG 0.619842 2_3:-33093153 None:intergenic
CCTGCATTACAACAATCCAT+TGG 0.622470 2_3:-33093279 None:intergenic
AAACAATTCCAAGATGGCCA+TGG 0.626037 2_3:+33092598 Msa0288290:CDS
GGAGTGGCAAGCAAGAAGAT+GGG 0.628166 2_3:-33092670 None:intergenic
TGGCATGTGCAAGTGCCCCA+AGG 0.634193 2_3:-33093133 None:intergenic
ATGGCGGCGACGGAAGCTGG+AGG 0.636720 2_3:+33087578 Msa0288290:CDS
CTTACGAGAGCATGAACCGC+CGG 0.643670 2_3:-33092942 None:intergenic
GTGGTGTGGGAGCAGAGTTG+GGG 0.644548 2_3:+33087818 Msa0288290:intron
GGAGCAGAGTTGGGGCGACG+GGG 0.647379 2_3:+33087826 Msa0288290:intron
TCGAGGTGATGAAAGTGATG+GGG 0.648692 2_3:-33092865 None:intergenic
ACAGGCTAAAGCGTTTGGAG+TGG 0.658549 2_3:-33092686 None:intergenic
CCTTAACCGACCATTCCGAC+CGG 0.662396 2_3:-33087390 None:intergenic
AAGACGGGAAAACAGATCAA+CGG 0.676522 2_3:+33087855 Msa0288290:CDS
GTTGCGATTGGTGAAGTACG+AGG 0.684760 2_3:+33087321 Msa0288290:CDS
CCACCTAAGAAAATGAACCA+TGG 0.695018 2_3:-33092615 None:intergenic
ATATGAAGGGTAATTATCGG+CGG 0.702822 2_3:+33087290 Msa0288290:exon
GAGTAACAAAACGAAAACGA+AGG 0.703111 2_3:+33087179 Msa0288290:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTGGAATTTTAAAATA+TGG - chr2_3:33087078-33087097 None:intergenic 10.0%
!! TATAGTTCTTATAAAATTTA+AGG + chr2_3:33089022-33089041 Msa0288290:intron 10.0%
!!! TAAAAGTTTATAATTTTGTA+GGG - chr2_3:33089136-33089155 None:intergenic 10.0%
!!! TTAAAAGTTTATAATTTTGT+AGG - chr2_3:33089137-33089156 None:intergenic 10.0%
!! AAAAGTGAATAAATTTATTT+AGG - chr2_3:33089168-33089187 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr2_3:33089714-33089733 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr2_3:33089715-33089734 None:intergenic 10.0%
!! ATTTATTTAGATTAGATGAT+TGG - chr2_3:33087049-33087068 None:intergenic 15.0%
!!! CTTTTCTTTTCTTTTTTTAT+TGG - chr2_3:33087093-33087112 None:intergenic 15.0%
!! AAAAAAAGAAAAGAAAAGAA+TGG + chr2_3:33087095-33087114 Msa0288290:five_prime_UTR 15.0%
!! ATTTAATGTCAAAAATAAGA+AGG - chr2_3:33087664-33087683 None:intergenic 15.0%
!!! TCATCAAAATTTTATCAATT+AGG - chr2_3:33088209-33088228 None:intergenic 15.0%
!! AGATTATTTGGAAAAAAAAA+AGG - chr2_3:33088746-33088765 None:intergenic 15.0%
!!! AATAATTACACTAATTTTGT+AGG - chr2_3:33089066-33089085 None:intergenic 15.0%
!! CAAAATTAGTGTAATTATTA+TGG + chr2_3:33089067-33089086 Msa0288290:intron 15.0%
!!! ACATAAGTTTATTATAGTTT+TGG + chr2_3:33089367-33089386 Msa0288290:intron 15.0%
!!! AACACTTTTTTTTAGAAAAT+GGG - chr2_3:33089580-33089599 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - chr2_3:33089650-33089669 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr2_3:33089713-33089732 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr2_3:33090094-33090113 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr2_3:33090093-33090112 Msa0288290:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr2_3:33090220-33090239 Msa0288290:intron 15.0%
!!! GACAATTTTTTTTTTCAAAA+GGG + chr2_3:33090428-33090447 Msa0288290:intron 15.0%
!!! ATTCTAACTTTTTTTTTTTG+AGG - chr2_3:33090620-33090639 None:intergenic 15.0%
!! AAAAAAAAAAAAGAATCTAC+TGG + chr2_3:33090734-33090753 Msa0288290:intron 15.0%
!!! TTTTCCATTAAAATAAAACA+TGG + chr2_3:33090763-33090782 Msa0288290:intron 15.0%
!!! CTTTTTTTACTTTTTTACTT+TGG - chr2_3:33091197-33091216 None:intergenic 15.0%
!!! TATTTGATTTTATATGAATC+CGG + chr2_3:33092206-33092225 Msa0288290:intron 15.0%
!!! ATAAACAGAAACATTTTTTA+GGG - chr2_3:33092325-33092344 None:intergenic 15.0%
!!! AATAAACAGAAACATTTTTT+AGG - chr2_3:33092326-33092345 None:intergenic 15.0%
!!! TTTTTTCTGAGCTTTTTTAA+CGG + chr2_3:33087726-33087745 Msa0288290:intron 20.0%
!!! AATAATTTTAAGGATGGTTT+TGG + chr2_3:33087769-33087788 Msa0288290:intron 20.0%
!!! ATAATTTTAAGGATGGTTTT+GGG + chr2_3:33087770-33087789 Msa0288290:intron 20.0%
!! AGAAATTTATAGTTTCGTAT+TGG + chr2_3:33087944-33087963 Msa0288290:intron 20.0%
!! TTGAAATATTAAAAGAGTCA+TGG - chr2_3:33088114-33088133 None:intergenic 20.0%
!! TGAAATAAGTAATAATGTAG+AGG + chr2_3:33088356-33088375 Msa0288290:intron 20.0%
!! AGATAACTAAATAATATTCG+AGG + chr2_3:33088773-33088792 Msa0288290:intron 20.0%
!!! GAACACTTTTTTTTAGAAAA+TGG - chr2_3:33089581-33089600 None:intergenic 20.0%
!!! TTGAAATAACTCAGTTATTT+TGG - chr2_3:33089603-33089622 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr2_3:33090103-33090122 None:intergenic 20.0%
!! TAAAAAGTAATTAATGCACT+TGG + chr2_3:33090378-33090397 Msa0288290:intron 20.0%
!! GCAAAAAAGTCATATAAAAA+TGG + chr2_3:33090406-33090425 Msa0288290:intron 20.0%
!!! GGACAATTTTTTTTTTCAAA+AGG + chr2_3:33090427-33090446 Msa0288290:intron 20.0%
!!! AACAAGTTTTCATCAAAAAA+TGG - chr2_3:33090503-33090522 None:intergenic 20.0%
!!! AACTTTTTTTTTTTGAGGAA+AGG - chr2_3:33090615-33090634 None:intergenic 20.0%
!! CATAATAGAATAGAATCTAT+TGG + chr2_3:33090696-33090715 Msa0288290:intron 20.0%
!!! CTATCCATGTTTTATTTTAA+TGG - chr2_3:33090770-33090789 None:intergenic 20.0%
!!! AATAAATGTTTCTTTTTTCG+AGG + chr2_3:33090884-33090903 Msa0288290:intron 20.0%
!! TATAAGAATGTCAAAATACT+GGG + chr2_3:33091007-33091026 Msa0288290:intron 20.0%
!!! AAGAAATCTTTTCTCAATTA+AGG + chr2_3:33091695-33091714 Msa0288290:intron 20.0%
!!! ATTTGATTTTATATGAATCC+GGG + chr2_3:33092207-33092226 Msa0288290:intron 20.0%
!! CATTTATTAAGCATCTATTT+AGG - chr2_3:33092291-33092310 None:intergenic 20.0%
!! AAACTAAACAAATGATTGAT+TGG - chr2_3:33092511-33092530 None:intergenic 20.0%
! GATAGTATAAATTTAATCGC+CGG + chr2_3:33087237-33087256 Msa0288290:five_prime_UTR 25.0%
!!! TCTTTTCTTTTTTCGTTTTC+CGG - chr2_3:33087259-33087278 None:intergenic 25.0%
!! CGAAAAAAGAAAAGATTTTC+CGG + chr2_3:33087264-33087283 Msa0288290:five_prime_UTR 25.0%
! AGTTCATATTGGATTATTAC+CGG + chr2_3:33087371-33087390 Msa0288290:CDS 25.0%
!!! TTTTTCTGAGCTTTTTTAAC+GGG + chr2_3:33087727-33087746 Msa0288290:intron 25.0%
! ACCATCCTTAAAATTATTAC+CGG - chr2_3:33087767-33087786 None:intergenic 25.0%
! TACAAAGTTAGAGACTAATT+TGG - chr2_3:33088073-33088092 None:intergenic 25.0%
! TAAGAATAGATTACAACGAT+AGG + chr2_3:33088252-33088271 Msa0288290:intron 25.0%
! AATTGAGTAAACCATGAAAT+TGG - chr2_3:33088280-33088299 None:intergenic 25.0%
!!! TCGTTATCCATTTTTCTTAA+CGG + chr2_3:33088431-33088450 Msa0288290:intron 25.0%
!!! ATTTTGACCGTTAAGAAAAA+TGG - chr2_3:33088441-33088460 None:intergenic 25.0%
!!! TTTGTTTTCCTTGTTTATGT+TGG - chr2_3:33088553-33088572 None:intergenic 25.0%
! AGAGATTAAGCTTTCAATAT+TGG + chr2_3:33088607-33088626 Msa0288290:intron 25.0%
!! AAATCAAGTTGCAATCTTAT+TGG - chr2_3:33088671-33088690 None:intergenic 25.0%
!!! CATACATACTTTTGAGTATA+AGG - chr2_3:33088721-33088740 None:intergenic 25.0%
! TATCTTGTGTGTAGATTATT+TGG - chr2_3:33088758-33088777 None:intergenic 25.0%
!!! GATCACTTATTTGCTAATTT+TGG - chr2_3:33088921-33088940 None:intergenic 25.0%
!! TTTTAACAGTCGAAAAGTTT+AGG + chr2_3:33089092-33089111 Msa0288290:intron 25.0%
! TCTTTCAAACTACAATATCA+TGG + chr2_3:33089284-33089303 Msa0288290:intron 25.0%
!!! ATAGTTTTGGAAAGTGTATT+TGG + chr2_3:33089380-33089399 Msa0288290:intron 25.0%
! AAAGTGGAATATATTGTGTT+GGG - chr2_3:33089690-33089709 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr2_3:33090060-33090079 Msa0288290:intron 25.0%
!!! TAAAGAGTGTTTAAGTGTTT+TGG - chr2_3:33090542-33090561 None:intergenic 25.0%
! TCGTGTTGTCAATTTATTAA+AGG - chr2_3:33090572-33090591 None:intergenic 25.0%
! AGTAATTCTAACTTCTTATC+TGG - chr2_3:33090648-33090667 None:intergenic 25.0%
! CTATAAGAATGTCAAAATAC+TGG + chr2_3:33091006-33091025 Msa0288290:intron 25.0%
!!! CTTTAGCAGTTCTAATATTT+TGG - chr2_3:33091855-33091874 None:intergenic 25.0%
!!! TTGTTTTAAGAAGCTAAATG+TGG - chr2_3:33091925-33091944 None:intergenic 25.0%
! TTCTCTCACTATATCAATAA+AGG - chr2_3:33092380-33092399 None:intergenic 25.0%
!! TCAATCATTTGTTTAGTTTC+AGG + chr2_3:33092512-33092531 Msa0288290:intron 25.0%
! ACTCTATTTGACATCAATAT+CGG + chr2_3:33092809-33092828 Msa0288290:CDS 25.0%
!!! TTTCATATTTTTGTTGTCCT+TGG + chr2_3:33093116-33093135 Msa0288290:CDS 25.0%
!!! TTCATATTTTTGTTGTCCTT+GGG + chr2_3:33093117-33093136 Msa0288290:CDS 25.0%
TGTTGGGTATAAATAGAGAA+AGG + chr2_3:33087155-33087174 Msa0288290:five_prime_UTR 30.0%
AAACGAAAACGAAGGAATAA+AGG + chr2_3:33087187-33087206 Msa0288290:five_prime_UTR 30.0%
CGAATATGAAGGGTAATTAT+CGG + chr2_3:33087287-33087306 Msa0288290:exon 30.0%
! TCGTTGTCTTTTAGATATTC+CGG - chr2_3:33087352-33087371 None:intergenic 30.0%
AAAAGACAACGAGTTCATAT+TGG + chr2_3:33087360-33087379 Msa0288290:CDS 30.0%
TTGTTCTTGTACAGTCATTT+GGG + chr2_3:33087533-33087552 Msa0288290:intron 30.0%
! CTTTTTAATATTTGCAGCGA+TGG + chr2_3:33087559-33087578 Msa0288290:CDS 30.0%
! GTTTTCTGTCTAATATCTAC+AGG + chr2_3:33087612-33087631 Msa0288290:CDS 30.0%
!!! TTTTCTGAGCTTTTTTAACG+GGG + chr2_3:33087728-33087747 Msa0288290:intron 30.0%
! CATGACCGGTAATAATTTTA+AGG + chr2_3:33087759-33087778 Msa0288290:intron 30.0%
!! ACCGGTAATAATTTTAAGGA+TGG + chr2_3:33087763-33087782 Msa0288290:intron 30.0%
!!! ATGGTTTTGGGTTTGATTTT+GGG + chr2_3:33087782-33087801 Msa0288290:intron 30.0%
! TTCTCAAAACAAAGTTTTCC+AGG + chr2_3:33087884-33087903 Msa0288290:CDS 30.0%
AATGATTAAGAAAGCAAACC+TGG - chr2_3:33087905-33087924 None:intergenic 30.0%
AAAGTTAGAGACTAATTTGG+TGG - chr2_3:33088070-33088089 None:intergenic 30.0%
AGAAATTTCTTACAATGACG+TGG - chr2_3:33088143-33088162 None:intergenic 30.0%
TCCCATTAACATAATTCAGT+TGG + chr2_3:33088312-33088331 Msa0288290:intron 30.0%
GCCAACTGAATTATGTTAAT+GGG - chr2_3:33088316-33088335 None:intergenic 30.0%
TGCCAACTGAATTATGTTAA+TGG - chr2_3:33088317-33088336 None:intergenic 30.0%
TACATATTTCTTGCTTGCTT+TGG - chr2_3:33088402-33088421 None:intergenic 30.0%
!!! TTTTCAAGTCTTTTCTTCCA+AGG - chr2_3:33088505-33088524 None:intergenic 30.0%
AACAAAAAGAGAAACAAGCT+AGG + chr2_3:33088567-33088586 Msa0288290:intron 30.0%
AACGATTGCAATCTTTATGT+AGG - chr2_3:33088695-33088714 None:intergenic 30.0%
!! ACATACTTTTGAGTATAAGG+AGG - chr2_3:33088718-33088737 None:intergenic 30.0%
TTCTCATAGTACTCCTTTAT+CGG - chr2_3:33088853-33088872 None:intergenic 30.0%
!! TTTGCTAATTTTGGCAGAAA+CGG - chr2_3:33088912-33088931 None:intergenic 30.0%
TCAACTCAAACTTTGAATCA+CGG - chr2_3:33089492-33089511 None:intergenic 30.0%
GAAAGTGGAATATATTGTGT+TGG - chr2_3:33089691-33089710 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr2_3:33089706-33089725 None:intergenic 30.0%
ATCTGTGTGAAAAACTAAAC+TGG + chr2_3:33089735-33089754 Msa0288290:intron 30.0%
TATTAATAAAGTACACCCTC+CGG + chr2_3:33089813-33089832 Msa0288290:intron 30.0%
! CTTTTGCTTATATTAGTGAC+CGG - chr2_3:33089944-33089963 None:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG + chr2_3:33089944-33089963 Msa0288290:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_3:33090011-33090030 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr2_3:33090012-33090031 Msa0288290:intron 30.0%
!! AAGGGTTTTATGATTAGAGA+CGG + chr2_3:33090446-33090465 Msa0288290:intron 30.0%
ATTACTTACACGACAAAACT+TGG + chr2_3:33090662-33090681 Msa0288290:intron 30.0%
AAAACATGGATAGAAAGAGT+TGG + chr2_3:33090777-33090796 Msa0288290:intron 30.0%
TTTAGTGTATGTTTGAATCC+AGG + chr2_3:33090909-33090928 Msa0288290:intron 30.0%
!!! TTATCCCTTTTGGAGTTATT+TGG - chr2_3:33091093-33091112 None:intergenic 30.0%
!!! CTCGATTTTTTTATCCCTTT+TGG - chr2_3:33091103-33091122 None:intergenic 30.0%
!!! CTTTTGTCTTAGTTTTGTCT+AGG - chr2_3:33091150-33091169 None:intergenic 30.0%
TTGATTCCACTATACATGAA+AGG + chr2_3:33091451-33091470 Msa0288290:intron 30.0%
TATACATGAAAGGATTACCA+CGG + chr2_3:33091461-33091480 Msa0288290:intron 30.0%
TGTTCAGCTATTCTCTTAAA+TGG - chr2_3:33091657-33091676 None:intergenic 30.0%
GAGAAAAGATTTCTTTGTCA+GGG - chr2_3:33091690-33091709 None:intergenic 30.0%
TGAGAAAAGATTTCTTTGTC+AGG - chr2_3:33091691-33091710 None:intergenic 30.0%
GTTTGATTGCATATATAGCA+AGG - chr2_3:33091760-33091779 None:intergenic 30.0%
!! GTTTATTGATTCATAGTCTG+AGG - chr2_3:33092076-33092095 None:intergenic 30.0%
TTGACTATAACATTACTCTC+TGG - chr2_3:33092183-33092202 None:intergenic 30.0%
AGAGAGTAATGTTATAGTCA+AGG + chr2_3:33092182-33092201 Msa0288290:intron 30.0%
!!! TGGAAGTATCCATTTTTGAT+AGG + chr2_3:33092556-33092575 Msa0288290:CDS 30.0%
!!! GGAAGTATCCATTTTTGATA+GGG + chr2_3:33092557-33092576 Msa0288290:CDS 30.0%
CAGAAAAACACGTAGTAAAT+TGG - chr2_3:33092771-33092790 None:intergenic 30.0%
AAGGAATAAAGATGCTCTAA+AGG - chr2_3:33092898-33092917 None:intergenic 30.0%
AGCATCTTTATTCCTTTCAA+TGG + chr2_3:33092902-33092921 Msa0288290:CDS 30.0%
GCATCTTTATTCCTTTCAAT+GGG + chr2_3:33092903-33092922 Msa0288290:CDS 30.0%
AATTGGATATGAGCTCTTAA+TGG + chr2_3:33092995-33093014 Msa0288290:CDS 30.0%
ATTGGATATGAGCTCTTAAT+GGG + chr2_3:33092996-33093015 Msa0288290:CDS 30.0%
!! TCATATTTTTGTTGTCCTTG+GGG + chr2_3:33093118-33093137 Msa0288290:CDS 30.0%
!! CTTGTATAATCGATTTTCGA+AGG + chr2_3:33093164-33093183 Msa0288290:exon 30.0%
AACTAGTAAAATGCACATGT+GGG - chr2_3:33093196-33093215 None:intergenic 30.0%
AAACTAGTAAAATGCACATG+TGG - chr2_3:33093197-33093216 None:intergenic 30.0%
ATTACAACAATCCATTGGTA+GGG - chr2_3:33093277-33093296 None:intergenic 30.0%
CGAACAAACATAGTCATATG+AGG - chr2_3:33087134-33087153 None:intergenic 35.0%
TGACTATGTTTGTTCGTTGT+TGG + chr2_3:33087138-33087157 Msa0288290:five_prime_UTR 35.0%
GACTATGTTTGTTCGTTGTT+GGG + chr2_3:33087139-33087158 Msa0288290:five_prime_UTR 35.0%
GAGTAACAAAACGAAAACGA+AGG + chr2_3:33087179-33087198 Msa0288290:five_prime_UTR 35.0%
TAATTACCCTTCATATTCGC+CGG - chr2_3:33087286-33087305 None:intergenic 35.0%
ATATGAAGGGTAATTATCGG+CGG + chr2_3:33087290-33087309 Msa0288290:exon 35.0%
CATATTGGATTATTACCGGT+CGG + chr2_3:33087375-33087394 Msa0288290:CDS 35.0%
ACAACGAAACGCTAAATGTT+TGG + chr2_3:33087440-33087459 Msa0288290:CDS 35.0%
AACAACAACGATGTCAAACA+TGG - chr2_3:33087515-33087534 None:intergenic 35.0%
GTTGTTCTTGTACAGTCATT+TGG + chr2_3:33087532-33087551 Msa0288290:intron 35.0%
TTTAATATTTGCAGCGATGG+CGG + chr2_3:33087562-33087581 Msa0288290:CDS 35.0%
!!! GATGGTTTTGGGTTTGATTT+TGG + chr2_3:33087781-33087800 Msa0288290:intron 35.0%
!!! TGGTTTTGGGTTTGATTTTG+GGG + chr2_3:33087783-33087802 Msa0288290:intron 35.0%
!! TAATTTGGTGGTTTGCTCAT+TGG - chr2_3:33088058-33088077 None:intergenic 35.0%
AACGATAGGAACCAATTTCA+TGG + chr2_3:33088266-33088285 Msa0288290:intron 35.0%
AACATAATTCAGTTGGCACT+TGG + chr2_3:33088319-33088338 Msa0288290:intron 35.0%
! CTAGAAAGACTTGCTTGATT+TGG - chr2_3:33088476-33088495 None:intergenic 35.0%
GACAAAGTCCAACATAAACA+AGG + chr2_3:33088542-33088561 Msa0288290:intron 35.0%
GAAAGCAATATACGTCACTT+TGG - chr2_3:33088643-33088662 None:intergenic 35.0%
ATAAACCACCAAAATGCACT+AGG + chr2_3:33088823-33088842 Msa0288290:intron 35.0%
!! TTGCTAATTTTGGCAGAAAC+GGG - chr2_3:33088911-33088930 None:intergenic 35.0%
CATAATGATCAATTGTGCAC+AGG - chr2_3:33088972-33088991 None:intergenic 35.0%
! TTTGGAAAGTGTATTTGGCT+CGG + chr2_3:33089385-33089404 Msa0288290:intron 35.0%
CAACTCAAACTTTGAATCAC+GGG - chr2_3:33089491-33089510 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG - chr2_3:33089567-33089586 None:intergenic 35.0%
! CTAAACTGGCTCAGATAAAA+CGG + chr2_3:33089749-33089768 Msa0288290:intron 35.0%
! TAAACTGGCTCAGATAAAAC+GGG + chr2_3:33089750-33089769 Msa0288290:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr2_3:33090142-33090161 Msa0288290:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr2_3:33090146-33090165 Msa0288290:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2_3:33090210-33090229 Msa0288290:intron 35.0%
TTATGATTAGAGACGGAGAT+AGG + chr2_3:33090453-33090472 Msa0288290:intron 35.0%
! ATGGATAGAAAGAGTTGGTT+TGG + chr2_3:33090782-33090801 Msa0288290:intron 35.0%
!!! GTTGTGTTTTGGTTACAGTT+TGG + chr2_3:33090804-33090823 Msa0288290:intron 35.0%
GATGCCAAATAACTCCAAAA+GGG + chr2_3:33091086-33091105 Msa0288290:intron 35.0%
!! GTGGCTTTTAGTTGTTATCT+TGG - chr2_3:33091128-33091147 None:intergenic 35.0%
!!! TTGTCTTAGTTTTGTCTAGG+TGG - chr2_3:33091147-33091166 None:intergenic 35.0%
TACGCTGGAAAAGTTCAATT+TGG - chr2_3:33091231-33091250 None:intergenic 35.0%
GTCTCTTTCTTTCTGATCTT+TGG - chr2_3:33091272-33091291 None:intergenic 35.0%
GATGTTTCTTGCATTGTCTA+CGG - chr2_3:33091338-33091357 None:intergenic 35.0%
!!! AGGATTTTGAGATACAACCA+AGG + chr2_3:33091385-33091404 Msa0288290:intron 35.0%
GGTAATCCTTTCATGTATAG+TGG - chr2_3:33091460-33091479 None:intergenic 35.0%
TGATTTAGAAATACAAGCCG+TGG - chr2_3:33091481-33091500 None:intergenic 35.0%
GACATATTTGAGCTGATCTA+AGG - chr2_3:33091512-33091531 None:intergenic 35.0%
ATCTTCGACTATTGCAATCT+CGG - chr2_3:33091595-33091614 None:intergenic 35.0%
GCATATTATGCAGTGCAATA+TGG - chr2_3:33091799-33091818 None:intergenic 35.0%
! ATTGATTCATAGTCTGAGGA+GGG - chr2_3:33092072-33092091 None:intergenic 35.0%
!! TATTGATTCATAGTCTGAGG+AGG - chr2_3:33092073-33092092 None:intergenic 35.0%
!! TTCACGTTTGAGACAGATTT+TGG + chr2_3:33092536-33092555 Msa0288290:CDS 35.0%
TTCTCTCACCCTATCAAAAA+TGG - chr2_3:33092568-33092587 None:intergenic 35.0%
TTTGATAGGGTGAGAGAATA+TGG + chr2_3:33092570-33092589 Msa0288290:CDS 35.0%
GAACAGAAACAATTCCAAGA+TGG + chr2_3:33092592-33092611 Msa0288290:CDS 35.0%
! AAAAAACAGGCTAAAGCGTT+TGG - chr2_3:33092694-33092713 None:intergenic 35.0%
!!! AACGCTTTAGCCTGTTTTTT+TGG + chr2_3:33092694-33092713 Msa0288290:CDS 35.0%
AATCTAGACGCCAAAAAAAC+AGG - chr2_3:33092707-33092726 None:intergenic 35.0%
GTAGTAAATTGGAGCATAGA+AGG - chr2_3:33092760-33092779 None:intergenic 35.0%
AAATAGAGTAACCTTGCGTA+AGG - chr2_3:33092798-33092817 None:intergenic 35.0%
TGATTATTGCCATTACTCCT+AGG - chr2_3:33092836-33092855 None:intergenic 35.0%
!! TTCCTTTCAATGGGTTTTTC+AGG + chr2_3:33092912-33092931 Msa0288290:CDS 35.0%
TACCTGAAAAACCCATTGAA+AGG - chr2_3:33092917-33092936 None:intergenic 35.0%
!!! GGGTTTTTCAGGTATTATTC+CGG + chr2_3:33092923-33092942 Msa0288290:CDS 35.0%
!!! TTTTTCAGGTATTATTCCGG+CGG + chr2_3:33092926-33092945 Msa0288290:CDS 35.0%
TCGCATATTGTAGTTGCAAT+TGG + chr2_3:33092978-33092997 Msa0288290:CDS 35.0%
TAACTAGAATACCAGAGAGA+TGG + chr2_3:33093051-33093070 Msa0288290:CDS 35.0%
CATTACAACAATCCATTGGT+AGG - chr2_3:33093278-33093297 None:intergenic 35.0%
! AGATTTTCCGGCGAATATGA+AGG + chr2_3:33087276-33087295 Msa0288290:exon 40.0%
! GATTTTCCGGCGAATATGAA+GGG + chr2_3:33087277-33087296 Msa0288290:exon 40.0%
TTCTTGTACAGTCATTTGGG+AGG + chr2_3:33087536-33087555 Msa0288290:intron 40.0%
!!! GGTTTTGGGTTTGATTTTGG+GGG + chr2_3:33087784-33087803 Msa0288290:intron 40.0%
!! GTTTGATTTTGGGGGTTTGT+TGG + chr2_3:33087792-33087811 Msa0288290:intron 40.0%
AAGACGGGAAAACAGATCAA+CGG + chr2_3:33087855-33087874 Msa0288290:CDS 40.0%
!! GTGCATTTTGGTGGTTTATG+AGG - chr2_3:33088822-33088841 None:intergenic 40.0%
! TTGGAAAGTGTATTTGGCTC+GGG + chr2_3:33089386-33089405 Msa0288290:intron 40.0%
AAGGTAAGCTACGAAAACGT+TGG + chr2_3:33089409-33089428 Msa0288290:intron 40.0%
GAAAATGGGTCAGATATTCC+GGG - chr2_3:33089566-33089585 None:intergenic 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr2_3:33089948-33089967 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - chr2_3:33089947-33089966 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + chr2_3:33089947-33089966 Msa0288290:intron 40.0%
TTATATTAGTGACCGGAGGA+GGG + chr2_3:33089951-33089970 Msa0288290:intron 40.0%
AACTATAATACACCCTCCTC+CGG - chr2_3:33089966-33089985 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_3:33090250-33090269 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr2_3:33090145-33090164 Msa0288290:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_3:33090250-33090269 Msa0288290:intron 40.0%
!!! GAGTTGGTTTGGTTGTGTTT+TGG + chr2_3:33090793-33090812 Msa0288290:intron 40.0%
TGTATGTTTGAATCCAGGTC+AGG + chr2_3:33090914-33090933 Msa0288290:intron 40.0%
CTTCAAAAGAAAACCTGACC+TGG - chr2_3:33090930-33090949 None:intergenic 40.0%
!! GGTCAGGTTTTCTTTTGAAG+AGG + chr2_3:33090930-33090949 Msa0288290:intron 40.0%
!!! TGTTGTTTTTGGTGCTCAGA+GGG - chr2_3:33091061-33091080 None:intergenic 40.0%
!!! TTGTTGTTTTTGGTGCTCAG+AGG - chr2_3:33091062-33091081 None:intergenic 40.0%
! TTTGGAGTTATTTGGCATCC+TGG - chr2_3:33091085-33091104 None:intergenic 40.0%
GGATGCCAAATAACTCCAAA+AGG + chr2_3:33091085-33091104 Msa0288290:intron 40.0%
!! ACTTTGGAGCTTTCACTCTT+TGG - chr2_3:33091181-33091200 None:intergenic 40.0%
TTTGTTCGTGATCAATACGC+TGG - chr2_3:33091246-33091265 None:intergenic 40.0%
CAGAAAGAAAGAGACACCTT+AGG + chr2_3:33091277-33091296 Msa0288290:intron 40.0%
ACTACTACTCCGAAACCAAA+CGG + chr2_3:33091359-33091378 Msa0288290:intron 40.0%
! AATCCTAGTCCGTTTGGTTT+CGG - chr2_3:33091371-33091390 None:intergenic 40.0%
TCTCAAAATCCTAGTCCGTT+TGG - chr2_3:33091377-33091396 None:intergenic 40.0%
GCGCTTTAGTTGTGTGTTAT+CGG - chr2_3:33091429-33091448 None:intergenic 40.0%
AGAGTGAATTATTGGCAGCA+AGG - chr2_3:33091549-33091568 None:intergenic 40.0%
TAGCCTCGAGAGTGAATTAT+TGG - chr2_3:33091557-33091576 None:intergenic 40.0%
TTGCAATCTCGGGAATCTAT+GGG - chr2_3:33091584-33091603 None:intergenic 40.0%
ATTGCAATCTCGGGAATCTA+TGG - chr2_3:33091585-33091604 None:intergenic 40.0%
TCTTCGACTATTGCAATCTC+GGG - chr2_3:33091594-33091613 None:intergenic 40.0%
AAAGATTTCTTTGTCAGGGC+AGG - chr2_3:33091686-33091705 None:intergenic 40.0%
TTGCATATATAGCAAGGTGC+TGG - chr2_3:33091754-33091773 None:intergenic 40.0%
! GTTTTGTCTGTAACAGATGC+AGG - chr2_3:33091821-33091840 None:intergenic 40.0%
!! TTCAAGTTGACAGCAAGAAG+AGG - chr2_3:33091887-33091906 None:intergenic 40.0%
TTGATTCATAGTCTGAGGAG+GGG - chr2_3:33092071-33092090 None:intergenic 40.0%
GTCTGAAAAATCCGAAGTTG+CGG - chr2_3:33092109-33092128 None:intergenic 40.0%
TTAAATCCTAGAGCGTGTCT+CGG - chr2_3:33092157-33092176 None:intergenic 40.0%
AAACAATTCCAAGATGGCCA+TGG + chr2_3:33092598-33092617 Msa0288290:CDS 40.0%
AAAATGAACCATGGCCATCT+TGG - chr2_3:33092609-33092628 None:intergenic 40.0%
! TGGCCATGGTTCATTTTCTT+AGG + chr2_3:33092612-33092631 Msa0288290:CDS 40.0%
CCACCTAAGAAAATGAACCA+TGG - chr2_3:33092618-33092637 None:intergenic 40.0%
! CCATGGTTCATTTTCTTAGG+TGG + chr2_3:33092615-33092634 Msa0288290:CDS 40.0%
! TGGTTCATTTTCTTAGGTGG+AGG + chr2_3:33092618-33092637 Msa0288290:CDS 40.0%
!! GTGTTGCTTACTTTGCAGTT+CGG + chr2_3:33092644-33092663 Msa0288290:CDS 40.0%
! TTTTGGCGTCTAGATTATGC+TGG + chr2_3:33092711-33092730 Msa0288290:CDS 40.0%
! TTTTCTGCAATCCTTACGCA+AGG + chr2_3:33092784-33092803 Msa0288290:CDS 40.0%
TTGACATCAATATCGGTCCT+AGG + chr2_3:33092816-33092835 Msa0288290:CDS 40.0%
AATATCGGTCCTAGGAGTAA+TGG + chr2_3:33092824-33092843 Msa0288290:CDS 40.0%
! TGAAAGTGATGGGGAAAGAA+GGG - chr2_3:33092859-33092878 None:intergenic 40.0%
! ATGAAAGTGATGGGGAAAGA+AGG - chr2_3:33092860-33092879 None:intergenic 40.0%
ATCGAGGTGATGAAAGTGAT+GGG - chr2_3:33092869-33092888 None:intergenic 40.0%
AATCGAGGTGATGAAAGTGA+TGG - chr2_3:33092870-33092889 None:intergenic 40.0%
TTCATGCTCTCGTAAGCAAT+TGG + chr2_3:33092949-33092968 Msa0288290:CDS 40.0%
TCATGCTCTCGTAAGCAATT+GGG + chr2_3:33092950-33092969 Msa0288290:CDS 40.0%
ATGGGCATTCTATATGCAAC+AGG + chr2_3:33093014-33093033 Msa0288290:CDS 40.0%
AACAATCCATTGGTAGGGTT+TGG - chr2_3:33093272-33093291 None:intergenic 40.0%
CCTGCATTACAACAATCCAT+TGG - chr2_3:33093282-33093301 None:intergenic 40.0%
!! CCAATGGATTGTTGTAATGC+AGG + chr2_3:33093279-33093298 Msa0288290:three_prime_UTR 40.0%
! AGGAATAAAGGTGCAAGCGA+CGG + chr2_3:33087199-33087218 Msa0288290:five_prime_UTR 45.0%
TGGATTATTACCGGTCGGAA+TGG + chr2_3:33087380-33087399 Msa0288290:CDS 45.0%
TTATTACCGGTCGGAATGGT+CGG + chr2_3:33087384-33087403 Msa0288290:CDS 45.0%
! AGTCTTTCTAGCACAAGCCT+TGG + chr2_3:33088485-33088504 Msa0288290:intron 45.0%
! GATCACCTAGTGCATTTTGG+TGG - chr2_3:33088831-33088850 None:intergenic 45.0%
! TCGGATCACCTAGTGCATTT+TGG - chr2_3:33088834-33088853 None:intergenic 45.0%
TGCACTAGGTGATCCGATAA+AGG + chr2_3:33088837-33088856 Msa0288290:intron 45.0%
CAATTGTGCACAGGAGATTG+TGG - chr2_3:33088963-33088982 None:intergenic 45.0%
!! AAAGTGTATTTGGCTCGGGA+AGG + chr2_3:33089390-33089409 Msa0288290:intron 45.0%
TTGGCCTATCCAGGATAAGT+GGG + chr2_3:33089428-33089447 Msa0288290:intron 45.0%
GGAAGAACAGAGACTACATG+GGG - chr2_3:33089470-33089489 None:intergenic 45.0%
GGGAAGAACAGAGACTACAT+GGG - chr2_3:33089471-33089490 None:intergenic 45.0%
CTTATATTAGTGACCGGAGG+AGG + chr2_3:33089950-33089969 Msa0288290:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_3:33090249-33090268 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_3:33090249-33090268 Msa0288290:intron 45.0%
!!! GTTGTTTTTGGTGCTCAGAG+GGG - chr2_3:33091060-33091079 None:intergenic 45.0%
GAGCACCAAAAACAACAACC+AGG + chr2_3:33091064-33091083 Msa0288290:intron 45.0%
!!! GGCATCCTGGTTGTTGTTTT+TGG - chr2_3:33091072-33091091 None:intergenic 45.0%
! TGGCTTGGAGTAAGATCCTA+AGG - chr2_3:33091296-33091315 None:intergenic 45.0%
GTCTTCCAGTAACTCGTTAG+TGG - chr2_3:33091316-33091335 None:intergenic 45.0%
!!! TCGCGTTTTGAGAGATTCCT+TGG - chr2_3:33091405-33091424 None:intergenic 45.0%
CTGCCAATAATTCACTCTCG+AGG + chr2_3:33091551-33091570 Msa0288290:intron 45.0%
TGCAATCTCGGGAATCTATG+GGG - chr2_3:33091583-33091602 None:intergenic 45.0%
AAGTTGACAGCAAGAAGAGG+AGG - chr2_3:33091884-33091903 None:intergenic 45.0%
!! TGCTTTTGGTTGGAAGCAGA+GGG - chr2_3:33091964-33091983 None:intergenic 45.0%
TGATTCATAGTCTGAGGAGG+GGG - chr2_3:33092070-33092089 None:intergenic 45.0%
CACGTTTGATCAACTTGACC+CGG - chr2_3:33092228-33092247 None:intergenic 45.0%
!! GGTCAAGTTGATCAAACGTG+CGG + chr2_3:33092228-33092247 Msa0288290:intron 45.0%
TCGAGGTGATGAAAGTGATG+GGG - chr2_3:33092868-33092887 None:intergenic 45.0%
!! GCTCTAAAGGTTCGAAATCG+AGG - chr2_3:33092885-33092904 None:intergenic 45.0%
CATGCTCTCGTAAGCAATTG+GGG + chr2_3:33092951-33092970 Msa0288290:CDS 45.0%
CCTGCAATATCAAATGCTCC+AGG - chr2_3:33093080-33093099 None:intergenic 45.0%
! CCTGGAGCATTTGATATTGC+AGG + chr2_3:33093077-33093096 Msa0288290:CDS 45.0%
! CGATTATACAAGTGTCGCAG+TGG - chr2_3:33093156-33093175 None:intergenic 45.0%
TAGCAACCAAACCCTACCAA+TGG + chr2_3:33093263-33093282 Msa0288290:three_prime_UTR 45.0%
!!! TTAAAATTATTTTTGAATTT+TGG + chr2_3:33092450-33092469 Msa0288290:intron 5.0%
! GGAATAAAGGTGCAAGCGAC+GGG + chr2_3:33087200-33087219 Msa0288290:five_prime_UTR 50.0%
GTTGCGATTGGTGAAGTACG+AGG + chr2_3:33087321-33087340 Msa0288290:CDS 50.0%
GGTGAAGTACGAGGAATTGC+CGG + chr2_3:33087330-33087349 Msa0288290:CDS 50.0%
! CTTTGTTCAGCGTTTTCGCG+TGG + chr2_3:33087416-33087435 Msa0288290:CDS 50.0%
!! TTTGGGGGTTTGTTGGTGTG+TGG + chr2_3:33087799-33087818 Msa0288290:intron 50.0%
!! GGTTTGTTGGTGTGTGGTGT+GGG + chr2_3:33087805-33087824 Msa0288290:intron 50.0%
! ACGAAAACGTTGGCCTATCC+AGG + chr2_3:33089419-33089438 Msa0288290:intron 50.0%
! GTTGGCCTATCCAGGATAAG+TGG + chr2_3:33089427-33089446 Msa0288290:intron 50.0%
CTGACCCACTTATCCTGGAT+AGG - chr2_3:33089435-33089454 None:intergenic 50.0%
CTAAGCTGACCCACTTATCC+TGG - chr2_3:33089440-33089459 None:intergenic 50.0%
CAGAGACTACATGGGGAGAT+GGG - chr2_3:33089463-33089482 None:intergenic 50.0%
ACAGAGACTACATGGGGAGA+TGG - chr2_3:33089464-33089483 None:intergenic 50.0%
CGGGAAGAACAGAGACTACA+TGG - chr2_3:33089472-33089491 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG - chr2_3:33089562-33089581 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG + chr2_3:33089754-33089773 Msa0288290:intron 50.0%
CCAGTAACTCGTTAGTGGCT+TGG - chr2_3:33091311-33091330 None:intergenic 50.0%
CCAAGCCACTAACGAGTTAC+TGG + chr2_3:33091308-33091327 Msa0288290:intron 50.0%
! ACTCCGAAACCAAACGGACT+AGG + chr2_3:33091365-33091384 Msa0288290:intron 50.0%
!! CAGCAAGGTGCATTGATTCG+AGG - chr2_3:33091534-33091553 None:intergenic 50.0%
!! CAAGGTGCTGGCAGCAATAT+TGG - chr2_3:33091742-33091761 None:intergenic 50.0%
ACAGCAAGAAGAGGAGGCTT+TGG - chr2_3:33091878-33091897 None:intergenic 50.0%
!! GTGCTTTTGGTTGGAAGCAG+AGG - chr2_3:33091965-33091984 None:intergenic 50.0%
! TAGGGTCTGGTGCTTTTGGT+TGG - chr2_3:33091974-33091993 None:intergenic 50.0%
! CTCATAGGGTCTGGTGCTTT+TGG - chr2_3:33091978-33091997 None:intergenic 50.0%
GTAGAGGGGACGTTCTCATA+GGG - chr2_3:33091992-33092011 None:intergenic 50.0%
TGTAGAGGGGACGTTCTCAT+AGG - chr2_3:33091993-33092012 None:intergenic 50.0%
AATCCGAAGTTGCGGCAGTT+TGG - chr2_3:33092101-33092120 None:intergenic 50.0%
ATGTTACCGAGACACGCTCT+AGG + chr2_3:33092148-33092167 Msa0288290:intron 50.0%
AAACGTGCGGTAGAAAGCCA+CGG + chr2_3:33092241-33092260 Msa0288290:intron 50.0%
AAAGCCACGGAAACGTCATG+CGG + chr2_3:33092254-33092273 Msa0288290:intron 50.0%
GGAGTGGCAAGCAAGAAGAT+GGG - chr2_3:33092673-33092692 None:intergenic 50.0%
TGGAGTGGCAAGCAAGAAGA+TGG - chr2_3:33092674-33092693 None:intergenic 50.0%
! ACAGGCTAAAGCGTTTGGAG+TGG - chr2_3:33092689-33092708 None:intergenic 50.0%
ATACCAGAGAGATGGAAGCC+TGG + chr2_3:33093059-33093078 Msa0288290:CDS 50.0%
GCGGAAGAGAACGTTGCGAT+TGG + chr2_3:33087309-33087328 Msa0288290:CDS 55.0%
CCTTAACCGACCATTCCGAC+CGG - chr2_3:33087393-33087412 None:intergenic 55.0%
ACGGGGCAAGTTAGCATGAC+CGG + chr2_3:33087745-33087764 Msa0288290:intron 55.0%
!! GGGTTTGTTGGTGTGTGGTG+TGG + chr2_3:33087804-33087823 Msa0288290:intron 55.0%
TGTGGTGTGGGAGCAGAGTT+GGG + chr2_3:33087817-33087836 Msa0288290:intron 55.0%
AACGTATACTCCCTCCGTCC+CGG + chr2_3:33089545-33089564 Msa0288290:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr2_3:33089558-33089577 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG + chr2_3:33089757-33089776 Msa0288290:intron 55.0%
!! GGTGCTGGCAGCAATATTGG+TGG - chr2_3:33091739-33091758 None:intergenic 55.0%
!! TGCTGCTGGCTGTGCTGTTT+CGG - chr2_3:33092025-33092044 None:intergenic 55.0%
TGGTGCTTTCTTGCTGCTGC+TGG - chr2_3:33092039-33092058 None:intergenic 55.0%
CTGCCAAACTGCCGCAACTT+CGG + chr2_3:33092095-33092114 Msa0288290:intron 55.0%
GAAACCGCATGACGTTTCCG+TGG - chr2_3:33092261-33092280 None:intergenic 55.0%
! CTTACGAGAGCATGAACCGC+CGG - chr2_3:33092945-33092964 None:intergenic 55.0%
CCGGTCGGAATGGTCGGTTA+AGG + chr2_3:33087390-33087409 Msa0288290:CDS 60.0%
! ATTTGCAGCGATGGCGGCGA+CGG + chr2_3:33087568-33087587 Msa0288290:CDS 60.0%
GTGTGGTGTGGGAGCAGAGT+TGG + chr2_3:33087816-33087835 Msa0288290:intron 60.0%
GTGGTGTGGGAGCAGAGTTG+GGG + chr2_3:33087818-33087837 Msa0288290:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG - chr2_3:33089559-33089578 None:intergenic 60.0%
GGGGACGTTCTCATAGGGTC+TGG - chr2_3:33091987-33092006 None:intergenic 60.0%
GAGAACGTCCCCTCTACAGC+AGG + chr2_3:33091995-33092014 Msa0288290:intron 60.0%
TTCGGTCGGCCTGCTGTAGA+GGG - chr2_3:33092007-33092026 None:intergenic 60.0%
TTTCGGTCGGCCTGCTGTAG+AGG - chr2_3:33092008-33092027 None:intergenic 60.0%
!! GCTGGCTGTGCTGTTTCGGT+CGG - chr2_3:33092021-33092040 None:intergenic 60.0%
GCTCCAGGCTTCCATCTCTC+TGG - chr2_3:33093065-33093084 None:intergenic 60.0%
TGGCATGTGCAAGTGCCCCA+AGG - chr2_3:33093136-33093155 None:intergenic 60.0%
ACGGAAGCTGGAGGAGGAGG+AGG + chr2_3:33087587-33087606 Msa0288290:CDS 65.0%
GAAGCTGGAGGAGGAGGAGG+TGG + chr2_3:33087590-33087609 Msa0288290:CDS 65.0%
TGGGAGCAGAGTTGGGGCGA+CGG + chr2_3:33087824-33087843 Msa0288290:intron 65.0%
GGCGACGGGGTCGTTGAAGA+CGG + chr2_3:33087839-33087858 Msa0288290:CDS 65.0%
GCGACGGGGTCGTTGAAGAC+GGG + chr2_3:33087840-33087859 Msa0288290:CDS 65.0%
TCGGTCGGCCTGCTGTAGAG+GGG - chr2_3:33092006-33092025 None:intergenic 65.0%
CTGAGGAGGGGGTCTGTCTG+TGG - chr2_3:33092059-33092078 None:intergenic 65.0%
ATGGCGGCGACGGAAGCTGG+AGG + chr2_3:33087578-33087597 Msa0288290:CDS 70.0%
GCGACGGAAGCTGGAGGAGG+AGG + chr2_3:33087584-33087603 Msa0288290:CDS 70.0%
GGGAGCAGAGTTGGGGCGAC+GGG + chr2_3:33087825-33087844 Msa0288290:intron 70.0%
GGAGCAGAGTTGGGGCGACG+GGG + chr2_3:33087826-33087845 Msa0288290:intron 70.0%
! GCGATGGCGGCGACGGAAGC+TGG + chr2_3:33087575-33087594 Msa0288290:CDS 75.0%
GCGGCGACGGAAGCTGGAGG+AGG + chr2_3:33087581-33087600 Msa0288290:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 33087041 33093342 33087041 ID=Msa0288290;Name=Msa0288290
chr2_3 mRNA 33087041 33093342 33087041 ID=Msa0288290-mRNA-1;Parent=Msa0288290;Name=Msa0288290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=251|1|1|1|0.66|0.75|4|170|325
chr2_3 exon 33087041 33087464 33087041 ID=Msa0288290-mRNA-1:exon:10910;Parent=Msa0288290-mRNA-1
chr2_3 exon 33087547 33087633 33087547 ID=Msa0288290-mRNA-1:exon:10911;Parent=Msa0288290-mRNA-1
chr2_3 exon 33087833 33087905 33087833 ID=Msa0288290-mRNA-1:exon:10912;Parent=Msa0288290-mRNA-1
chr2_3 exon 33092528 33093342 33092528 ID=Msa0288290-mRNA-1:exon:10913;Parent=Msa0288290-mRNA-1
chr2_3 five_prime_UTR 33087041 33087291 33087041 ID=Msa0288290-mRNA-1:five_prime_utr;Parent=Msa0288290-mRNA-1
chr2_3 CDS 33087292 33087464 33087292 ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1
chr2_3 CDS 33087547 33087633 33087547 ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1
chr2_3 CDS 33087833 33087905 33087833 ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1
chr2_3 CDS 33092528 33093172 33092528 ID=Msa0288290-mRNA-1:cds;Parent=Msa0288290-mRNA-1
chr2_3 three_prime_UTR 33093173 33093342 33093173 ID=Msa0288290-mRNA-1:three_prime_utr;Parent=Msa0288290-mRNA-1
Gene Sequence

>Msa0288290

ATGAAGGGTAATTATCGGCGGAAGAGAACGTTGCGATTGGTGAAGTACGAGGAATTGCCGGAATATCTAAAAGACAACGAGTTCATATTGGATTATTACCGGTCGGAATGGTCGGTTAAGGATGCTTTGTTCAGCGTTTTCGCGTGGCACAACGAAACGCTAAATGTTTGGACTCATTTGGGAGGCTTTTTAATATTTGCAGCGATGGCGGCGACGGAAGCTGGAGGAGGAGGAGGTGGTTTTCTGTCTAATATCTACAGAGTTGGGGCGACGGGGTCGTTGAAGACGGGAAAACAGATCAACGGTTCTCATTCTCAAAACAAAGTTTTCCAGTTTCAGGATTCACGTTTGAGACAGATTTTGGAAGTATCCATTTTTGATAGGGTGAGAGAATATGGAACAGAAACAATTCCAAGATGGCCATGGTTCATTTTCTTAGGTGGAGGAATGTGTTGCTTACTTTGCAGTTCGGTTTCCCATCTTCTTGCTTGCCACTCCAAACGCTTTAGCCTGTTTTTTTGGCGTCTAGATTATGCTGGAATATCAATTATGATAATATGCTCCTTCTATGCTCCAATTTACTACGTGTTTTTCTGCAATCCTTACGCAAGGTTACTCTATTTGACATCAATATCGGTCCTAGGAGTAATGGCAATAATCACCCTTCTTTCCCCATCACTTTCATCACCTCGATTTCGAACCTTTAGAGCATCTTTATTCCTTTCAATGGGTTTTTCAGGTATTATTCCGGCGGTTCATGCTCTCGTAAGCAATTGGGGAAACTCGCATATTGTAGTTGCAATTGGATATGAGCTCTTAATGGGCATTCTATATGCAACAGGTGCTGTGTTTTATGTAACTAGAATACCAGAGAGATGGAAGCCTGGAGCATTTGATATTGCAGGACATAGTCATCAGATTTTTCATATTTTTGTTGTCCTTGGGGCACTTGCACATGCCACTGCGACACTTGTATAA

Protein sequence

>Msa0288290

MKGNYRRKRTLRLVKYEELPEYLKDNEFILDYYRSEWSVKDALFSVFAWHNETLNVWTHLGGFLIFAAMAATEAGGGGGGFLSNIYRVGATGSLKTGKQINGSHSQNKVFQFQDSRLRQILEVSIFDRVREYGTETIPRWPWFIFLGGGMCCLLCSSVSHLLACHSKRFSLFFWRLDYAGISIMIICSFYAPIYYVFFCNPYARLLYLTSISVLGVMAIITLLSPSLSSPRFRTFRASLFLSMGFSGIIPAVHALVSNWGNSHIVVAIGYELLMGILYATGAVFYVTRIPERWKPGAFDIAGHSHQIFHIFVVLGALAHATATLV*