Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288370 | XP_024630378.1 | 97.050 | 339 | 9 | 1 | 1 | 339 | 1 | 338 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288370 | sp|Q84N34|HHP2_ARATH | 57.593 | 349 | 128 | 5 | 1 | 338 | 19 | 358 | 1.92e-142 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288370 | A0A396JFZ6 | 97.050 | 339 | 9 | 1 | 1 | 339 | 1 | 338 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096040 | Msa0288370 | 0.928162 | 4.264317e-92 | -8.615850e-47 |
| Msa0288290 | Msa0288370 | 0.852783 | 3.681195e-61 | -8.615850e-47 |
| Msa0288370 | Msa0485340 | 0.922469 | 9.449137e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288370 | MtrunA17_Chr2g0305481 | 97.050 | 339 | 9 | 1 | 1 | 339 | 1 | 338 | 0.0 | 669 |
| Msa0288370 | MtrunA17_Chr4g0064481 | 48.503 | 334 | 151 | 3 | 4 | 330 | 38 | 357 | 3.81e-108 | 320 |
| Msa0288370 | MtrunA17_Chr5g0401021 | 42.458 | 358 | 161 | 4 | 7 | 330 | 28 | 374 | 3.92e-90 | 275 |
| Msa0288370 | MtrunA17_Chr3g0134921 | 42.778 | 360 | 170 | 6 | 7 | 330 | 32 | 391 | 2.74e-88 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0288370 | AT4G30850.2 | 57.593 | 349 | 128 | 5 | 1 | 338 | 19 | 358 | 1.95e-143 | 410 |
| Msa0288370 | AT4G30850.1 | 57.593 | 349 | 128 | 5 | 1 | 338 | 19 | 358 | 1.95e-143 | 410 |
| Msa0288370 | AT2G24150.1 | 56.575 | 327 | 127 | 4 | 12 | 338 | 33 | 344 | 7.23e-131 | 377 |
| Msa0288370 | AT5G20270.1 | 46.505 | 329 | 130 | 1 | 2 | 330 | 45 | 327 | 7.01e-103 | 306 |
| Msa0288370 | AT2G24150.2 | 67.157 | 204 | 67 | 0 | 135 | 338 | 52 | 255 | 1.25e-102 | 302 |
| Msa0288370 | AT4G37680.1 | 41.899 | 358 | 179 | 4 | 2 | 330 | 23 | 380 | 3.43e-92 | 280 |
| Msa0288370 | AT4G37680.5 | 41.899 | 358 | 179 | 4 | 2 | 330 | 23 | 380 | 3.43e-92 | 280 |
| Msa0288370 | AT4G37680.2 | 41.899 | 358 | 179 | 4 | 2 | 330 | 23 | 380 | 3.43e-92 | 280 |
| Msa0288370 | AT4G37680.3 | 41.899 | 358 | 179 | 4 | 2 | 330 | 28 | 385 | 3.90e-92 | 280 |
| Msa0288370 | AT4G37680.4 | 41.899 | 358 | 179 | 4 | 2 | 330 | 28 | 385 | 3.90e-92 | 280 |
| Msa0288370 | AT4G38320.1 | 42.045 | 352 | 175 | 4 | 2 | 324 | 23 | 374 | 1.74e-89 | 273 |
| Msa0288370 | AT2G40710.1 | 54.545 | 88 | 40 | 0 | 243 | 330 | 1 | 88 | 2.73e-27 | 103 |
| Msa0288370 | AT4G38290.1 | 64.516 | 62 | 22 | 0 | 269 | 330 | 42 | 103 | 5.96e-22 | 89.7 |
Find 90 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACGTTTGAGACAGATTT+TGG | 0.180770 | 2_3:-33335164 | Msa0288370:CDS |
| TTTGATAGGGTGAGAGAATA+TGG | 0.256564 | 2_3:-33335130 | Msa0288370:CDS |
| AATTGGATATGAGCTCTTAA+TGG | 0.270809 | 2_3:-33334705 | Msa0288370:CDS |
| GTTGTTCTTGTACAGTCATT+TGG | 0.300362 | 2_3:-33340127 | Msa0288370:intron |
| AGCATCTTTATTCCTTTCAA+TGG | 0.327223 | 2_3:-33334798 | Msa0288370:CDS |
| TTGTTCTTGTACAGTCATTT+GGG | 0.334474 | 2_3:-33340126 | Msa0288370:intron |
| AAAAGACAACGAGTTCATAT+TGG | 0.344022 | 2_3:-33340299 | Msa0288370:CDS |
| GCGATGGCGGCGACGGAAGC+TGG | 0.345791 | 2_3:-33340084 | Msa0288370:CDS |
| AACAATCCATTGGTAGGGTT+TGG | 0.348659 | 2_3:+33334429 | None:intergenic |
| TTCATGCTCTCGTAAGCAAT+TGG | 0.354615 | 2_3:-33334751 | Msa0288370:CDS |
| ACTCTATTTGACATCAATAT+CGG | 0.361427 | 2_3:-33334891 | Msa0288370:CDS |
| ATTTATTTAGATTAGATGAT+TGG | 0.363801 | 2_3:+33340612 | None:intergenic |
| TGACTATGTTTGTTCGTTGT+TGG | 0.367410 | 2_3:-33340525 | Msa0288370:five_prime_UTR |
| CCTGGAGCATTTGATATTGC+AGG | 0.369519 | 2_3:-33334623 | Msa0288370:CDS |
| GGGAGCAGAGTTGGGGCGAC+GGG | 0.381038 | 2_3:-33339834 | Msa0288370:intron |
| AGTTCATATTGGATTATTAC+CGG | 0.383152 | 2_3:-33340288 | Msa0288370:CDS |
| AAACGAAAACGAAGGAATAA+AGG | 0.390532 | 2_3:-33340476 | Msa0288370:five_prime_UTR |
| GACTATGTTTGTTCGTTGTT+GGG | 0.392950 | 2_3:-33340524 | Msa0288370:five_prime_UTR |
| TCGCATATTGTAGTTGCAAT+TGG | 0.397993 | 2_3:-33334722 | Msa0288370:CDS |
| AAAATGAACCATGGCCATCT+TGG | 0.399515 | 2_3:+33335094 | None:intergenic |
| TCATGCTCTCGTAAGCAATT+GGG | 0.408002 | 2_3:-33334750 | Msa0288370:CDS |
| GCGACGGAAGCTGGAGGAGG+AGG | 0.408012 | 2_3:-33340075 | Msa0288370:CDS |
| ACAACGAAACGCTAAATGTT+TGG | 0.429326 | 2_3:-33340219 | Msa0288370:CDS |
| ATTGGATATGAGCTCTTAAT+GGG | 0.433906 | 2_3:-33334704 | Msa0288370:CDS |
| ACGGAAGCTGGAGGAGGAGG+AGG | 0.442291 | 2_3:-33340072 | Msa0288370:CDS |
| AGATTAGATGATTGGTTTCG+TGG | 0.457726 | 2_3:+33340620 | None:intergenic |
| GGAATAAAGGTGCAAGCGAC+GGG | 0.459408 | 2_3:-33340463 | Msa0288370:five_prime_UTR |
| ATGGGCATTCTATATGCAAC+AGG | 0.462499 | 2_3:-33334686 | Msa0288370:CDS |
| TGGGAGCAGAGTTGGGGCGA+CGG | 0.463792 | 2_3:-33339835 | Msa0288370:intron |
| GCATCTTTATTCCTTTCAAT+GGG | 0.465831 | 2_3:-33334797 | Msa0288370:CDS |
| CGAATATGAAGGGTAATTAT+CGG | 0.467352 | 2_3:-33340372 | Msa0288370:exon |
| GTAGTAAATTGGAGCATAGA+AGG | 0.468904 | 2_3:+33334943 | None:intergenic |
| TGGAGTGGCAAGCAAGAAGA+TGG | 0.469300 | 2_3:+33335029 | None:intergenic |
| GTGTTGCTTACTTTGCAGTT+CGG | 0.481770 | 2_3:-33335056 | Msa0288370:CDS |
| TGATTATTGCCATTACTCCT+AGG | 0.484435 | 2_3:+33334867 | None:intergenic |
| GCGGCGACGGAAGCTGGAGG+AGG | 0.486075 | 2_3:-33340078 | Msa0288370:CDS |
| CATTACAACAATCCATTGGT+AGG | 0.487060 | 2_3:+33334423 | None:intergenic |
| ATGAAAGTGATGGGGAAAGA+AGG | 0.490228 | 2_3:+33334843 | None:intergenic |
| TTTAATATTTGCAGCGATGG+CGG | 0.490595 | 2_3:-33340097 | Msa0288370:CDS |
| AAGGAATAAAGATGCTCTAA+AGG | 0.495018 | 2_3:+33334805 | None:intergenic |
| GAAGCTGGAGGAGGAGGAGG+TGG | 0.496794 | 2_3:-33340069 | Msa0288370:CDS |
| GCGACGGGGTCGTTGAAGAC+GGG | 0.498294 | 2_3:-33339819 | Msa0288370:CDS |
| AGGAATAAAGGTGCAAGCGA+CGG | 0.501490 | 2_3:-33340464 | Msa0288370:five_prime_UTR |
| GCTCCAGGCTTCCATCTCTC+TGG | 0.506779 | 2_3:+33334638 | None:intergenic |
| TTGACATCAATATCGGTCCT+AGG | 0.520515 | 2_3:-33334884 | Msa0288370:CDS |
| ATACCAGAGAGATGGAAGCC+TGG | 0.520590 | 2_3:-33334641 | Msa0288370:CDS |
| CGAACAAACATAGTCATATG+AGG | 0.522377 | 2_3:+33340532 | None:intergenic |
| ATTTGCAGCGATGGCGGCGA+CGG | 0.523006 | 2_3:-33340091 | Msa0288370:CDS |
| GCGGAAGAGAACGTCGCGAT+TGG | 0.526186 | 2_3:-33340350 | Msa0288370:CDS |
| GATAATATAAATTTAATCGC+CGG | 0.534759 | 2_3:-33340422 | Msa0288370:five_prime_UTR |
| GGCGACGGGGTCGTTGAAGA+CGG | 0.536340 | 2_3:-33339820 | Msa0288370:CDS |
| CCAATGGATTGTTGTAATGC+AGG | 0.537390 | 2_3:-33334419 | Msa0288370:three_prime_UTR |
| ATCGAGGTGATGAAAGTGAT+GGG | 0.541396 | 2_3:+33334834 | None:intergenic |
| TAATTACCCTTCATATTCGC+CGG | 0.541667 | 2_3:+33340376 | None:intergenic |
| AATATCGGTCCTAGGAGTAA+TGG | 0.546762 | 2_3:-33334876 | Msa0288370:CDS |
| TGGATTATTACCGGTCGGAA+TGG | 0.548875 | 2_3:-33340279 | Msa0288370:CDS |
| ATTACAACAATCCATTGGTA+GGG | 0.555645 | 2_3:+33334424 | None:intergenic |
| AAATAGAGTAACCTTGCGTA+AGG | 0.563549 | 2_3:+33334905 | None:intergenic |
| CATGCTCTCGTAAGCAATTG+GGG | 0.565438 | 2_3:-33334749 | Msa0288370:CDS |
| CCGGTCGGAATGGTCAGTTA+AGG | 0.566674 | 2_3:-33340269 | Msa0288370:CDS |
| AGACTAGTAAAATGCACATG+TGG | 0.568074 | 2_3:+33334505 | None:intergenic |
| GGTGAAGTACGAGGAACTGC+CGG | 0.571399 | 2_3:-33340329 | Msa0288370:CDS |
| TGTTGGGTATAAATAGAGAA+AGG | 0.573206 | 2_3:-33340508 | Msa0288370:five_prime_UTR |
| TTCTTGTACAGTCATTTGGG+AGG | 0.573521 | 2_3:-33340123 | Msa0288370:intron |
| TAACTAGAATACCAGAGAGA+TGG | 0.576093 | 2_3:-33334649 | Msa0288370:CDS |
| CCTGCAATATCAAATGCTCC+AGG | 0.579712 | 2_3:+33334623 | None:intergenic |
| AATCGAGGTGATGAAAGTGA+TGG | 0.582826 | 2_3:+33334833 | None:intergenic |
| TGAAAGTGATGGGGAAAGAA+GGG | 0.590589 | 2_3:+33334844 | None:intergenic |
| GCTCTAAAGGTTCGAAATCG+AGG | 0.591484 | 2_3:+33334818 | None:intergenic |
| CATATTGGATTATTACCGGT+CGG | 0.594477 | 2_3:-33340284 | Msa0288370:CDS |
| GAACAGAAACAATTCCAAGA+TGG | 0.595445 | 2_3:-33335108 | Msa0288370:CDS |
| TAGCAACCAAACCCTACCAA+TGG | 0.597356 | 2_3:-33334435 | Msa0288370:three_prime_UTR |
| GACTAGTAAAATGCACATGT+GGG | 0.615594 | 2_3:+33334506 | None:intergenic |
| CCTGCATTACAACAATCCAT+TGG | 0.622470 | 2_3:+33334419 | None:intergenic |
| AAACAATTCCAAGATGGCCA+TGG | 0.626037 | 2_3:-33335102 | Msa0288370:CDS |
| GGAGTGGCAAGCAAGAAGAT+GGG | 0.628166 | 2_3:+33335030 | None:intergenic |
| TGGCATGTGCAAGTGCCCCA+AGG | 0.634193 | 2_3:+33334567 | None:intergenic |
| ATGGCGGCGACGGAAGCTGG+AGG | 0.636720 | 2_3:-33340081 | Msa0288370:CDS |
| CCTTAACTGACCATTCCGAC+CGG | 0.637082 | 2_3:+33340269 | None:intergenic |
| GTGATGTGGGAGCAGAGTTG+GGG | 0.640392 | 2_3:-33339841 | Msa0288370:intron |
| CTTACGAGAGCATGAACCGC+CGG | 0.643670 | 2_3:+33334758 | None:intergenic |
| GGAGCAGAGTTGGGGCGACG+GGG | 0.647379 | 2_3:-33339833 | Msa0288370:intron |
| TCGAGGTGATGAAAGTGATG+GGG | 0.648692 | 2_3:+33334835 | None:intergenic |
| ACAGGCTAAAGCGTTTGGAG+TGG | 0.658549 | 2_3:+33335014 | None:intergenic |
| GATTATGACAAGTGTCGCAG+TGG | 0.674182 | 2_3:+33334547 | None:intergenic |
| AAGACGGGAAAACAGATCAA+CGG | 0.676522 | 2_3:-33339804 | Msa0288370:CDS |
| CCACCTAAGAAAATGAACCA+TGG | 0.695018 | 2_3:+33335085 | None:intergenic |
| GTCGCGATTGGTGAAGTACG+AGG | 0.697752 | 2_3:-33340338 | Msa0288370:CDS |
| ATATGAAGGGTAATTATCGG+CGG | 0.702822 | 2_3:-33340369 | Msa0288370:CDS |
| GAGTAACAAAACGAAAACGA+AGG | 0.703111 | 2_3:-33340484 | Msa0288370:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTGGAATTTTAAAATA+TGG | + | chr2_3:33334415-33334434 | None:intergenic | 10.0% |
| !! | TATAGTTCTTATAAAATTTA+AGG | - | chr2_3:33336368-33336387 | Msa0288370:intron | 10.0% |
| !!! | TAAAAGTTTATAATTTTGTA+GGG | + | chr2_3:33336482-33336501 | None:intergenic | 10.0% |
| !!! | TTAAAAGTTTATAATTTTGT+AGG | + | chr2_3:33336483-33336502 | None:intergenic | 10.0% |
| !!! | ACAAATTTTTTTTTTCAAAA+GGG | - | chr2_3:33337714-33337733 | Msa0288370:intron | 10.0% |
| !! | AAAAAAAAAAAAGAATCTAT+TGG | - | chr2_3:33338026-33338045 | Msa0288370:intron | 10.0% |
| !!! | TTAAAATTATTTTGGAATTT+TGG | - | chr2_3:33339745-33339764 | Msa0288370:intron | 10.0% |
| !! | ATTTATTTAGATTAGATGAT+TGG | + | chr2_3:33334386-33334405 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTCTTTTTTTAT+TGG | + | chr2_3:33334430-33334449 | None:intergenic | 15.0% |
| !! | AAAAAAAGAAAAGAAAAGAA+TGG | - | chr2_3:33334432-33334451 | Msa0288370:three_prime_UTR | 15.0% |
| !! | ATTTAATGTCAAAAATAAGA+AGG | + | chr2_3:33335000-33335019 | None:intergenic | 15.0% |
| !!! | TCATCAAAATTTTATCAATT+AGG | + | chr2_3:33335547-33335566 | None:intergenic | 15.0% |
| !! | AGATTATTTGGAAAAAAAAA+AGG | + | chr2_3:33336091-33336110 | None:intergenic | 15.0% |
| !!! | AATAATTACACTAATTTTGT+AGG | + | chr2_3:33336412-33336431 | None:intergenic | 15.0% |
| !! | CAAAATTAGTGTAATTATTA+TGG | - | chr2_3:33336413-33336432 | Msa0288370:intron | 15.0% |
| !!! | ACATAAGTTTATTATAGTTT+TGG | - | chr2_3:33336713-33336732 | Msa0288370:intron | 15.0% |
| !!! | TTTTTATTGGTCAAAAATAA+TGG | + | chr2_3:33337301-33337320 | None:intergenic | 15.0% |
| !!! | TTGTTTTTCTATCTTTTTAT+TGG | + | chr2_3:33337314-33337333 | None:intergenic | 15.0% |
| !!! | GACAAATTTTTTTTTTCAAA+AGG | - | chr2_3:33337713-33337732 | Msa0288370:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGAGGAA+AGG | + | chr2_3:33337901-33337920 | None:intergenic | 15.0% |
| !!! | TTTTCCATTAAAATAAAACA+TGG | - | chr2_3:33338055-33338074 | Msa0288370:intron | 15.0% |
| !!! | CTTTTTTTACTTTTTTACTT+TGG | + | chr2_3:33338490-33338509 | None:intergenic | 15.0% |
| !!! | TATTTGATTTTATATGAATC+CGG | - | chr2_3:33339501-33339520 | Msa0288370:intron | 15.0% |
| !!! | ATAAACAGAAACATTTTTTA+GGG | + | chr2_3:33339620-33339639 | None:intergenic | 15.0% |
| !!! | AATAAACAGAAACATTTTTT+AGG | + | chr2_3:33339621-33339640 | None:intergenic | 15.0% |
| !! | GATAATATAAATTTAATCGC+CGG | - | chr2_3:33334573-33334592 | Msa0288370:CDS | 20.0% |
| !!! | TTTTTTCTGAGCTTTTTTAA+CGG | - | chr2_3:33335062-33335081 | Msa0288370:CDS | 20.0% |
| !!! | AATAATTTTAAGGATGGTTT+TGG | - | chr2_3:33335105-33335124 | Msa0288370:CDS | 20.0% |
| !!! | ATAATTTTAAGGATGGTTTT+GGG | - | chr2_3:33335106-33335125 | Msa0288370:CDS | 20.0% |
| !! | AGAAATTTATAGTTTCGTAT+TGG | - | chr2_3:33335279-33335298 | Msa0288370:intron | 20.0% |
| !! | TTGAAATATTAAAAGAGTCA+TGG | + | chr2_3:33335452-33335471 | None:intergenic | 20.0% |
| !! | TGAAATAAGTAATAATGTAG+AGG | - | chr2_3:33335694-33335713 | Msa0288370:intron | 20.0% |
| !! | AGATAACTAAATAATATTCG+AGG | - | chr2_3:33336118-33336137 | Msa0288370:intron | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | - | chr2_3:33337144-33337163 | Msa0288370:intron | 20.0% |
| !! | CATAATAGAATAGAATCTAT+TGG | - | chr2_3:33337988-33338007 | Msa0288370:intron | 20.0% |
| !!! | CTATCCATGTTTTATTTTAA+TGG | + | chr2_3:33338062-33338081 | None:intergenic | 20.0% |
| !! | AATAAAATATCTTAAAGCAC+AGG | - | chr2_3:33338271-33338290 | Msa0288370:intron | 20.0% |
| !! | TATAAGAATGTCAAAATACT+GGG | - | chr2_3:33338300-33338319 | Msa0288370:intron | 20.0% |
| !!! | AAGAAATCTTTTCTCAATTA+AGG | - | chr2_3:33338989-33339008 | Msa0288370:intron | 20.0% |
| !!! | TTTAGCAGTTCTAATATTAT+TGG | + | chr2_3:33339149-33339168 | None:intergenic | 20.0% |
| !!! | ATTTGATTTTATATGAATCC+GGG | - | chr2_3:33339502-33339521 | Msa0288370:intron | 20.0% |
| !! | CATTTATTAAGCATCTATTT+AGG | + | chr2_3:33339586-33339605 | None:intergenic | 20.0% |
| !! | AAACTAAACAAATGATTGAT+TGG | + | chr2_3:33339806-33339825 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTTTTTCGTTTTC+CGG | + | chr2_3:33334595-33334614 | None:intergenic | 25.0% |
| !! | CGAAAAAAGAAAAGATTTTC+CGG | - | chr2_3:33334600-33334619 | Msa0288370:CDS | 25.0% |
| ! | AGTTCATATTGGATTATTAC+CGG | - | chr2_3:33334707-33334726 | Msa0288370:CDS | 25.0% |
| !!! | TTTTTCTGAGCTTTTTTAAC+GGG | - | chr2_3:33335063-33335082 | Msa0288370:CDS | 25.0% |
| ! | ACCATCCTTAAAATTATTAC+CGG | + | chr2_3:33335103-33335122 | None:intergenic | 25.0% |
| ! | TACAAAGTTAGAGACTAATT+TGG | + | chr2_3:33335411-33335430 | None:intergenic | 25.0% |
| ! | TAAGAATAGATTACAACGAT+AGG | - | chr2_3:33335590-33335609 | Msa0288370:intron | 25.0% |
| ! | AATTGAGTAAACCATGAAAT+TGG | + | chr2_3:33335618-33335637 | None:intergenic | 25.0% |
| !!! | TCGTTATCCATTTTTCTTAA+CGG | - | chr2_3:33335769-33335788 | Msa0288370:intron | 25.0% |
| !!! | ATTTTGACCGTTAAGAAAAA+TGG | + | chr2_3:33335779-33335798 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCCTTGTTTATGT+TGG | + | chr2_3:33335891-33335910 | None:intergenic | 25.0% |
| ! | AGAGATTAAGCTTTCAATAT+TGG | - | chr2_3:33335952-33335971 | Msa0288370:intron | 25.0% |
| !! | AAATCAAGTTGCAATCTTAT+TGG | + | chr2_3:33336016-33336035 | None:intergenic | 25.0% |
| !!! | CATACATACTTTTGAGTATA+AGG | + | chr2_3:33336066-33336085 | None:intergenic | 25.0% |
| ! | TATCTTGTGTGTAGATTATT+TGG | + | chr2_3:33336103-33336122 | None:intergenic | 25.0% |
| !!! | GATCACTTATTTGCTAATTT+TGG | + | chr2_3:33336266-33336285 | None:intergenic | 25.0% |
| !! | TTTTAACAGTCGAAAAGTTT+AGG | - | chr2_3:33336438-33336457 | Msa0288370:intron | 25.0% |
| ! | TCTTTCAAACTACAATATCA+TGG | - | chr2_3:33336630-33336649 | Msa0288370:intron | 25.0% |
| !!! | ATAGTTTTGGAAAGTGTATT+TGG | - | chr2_3:33336726-33336745 | Msa0288370:intron | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr2_3:33337157-33337176 | Msa0288370:intron | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr2_3:33337158-33337177 | Msa0288370:intron | 25.0% |
| !!! | ACTTTTGTTATATTAGTGAC+CGG | - | chr2_3:33337503-33337522 | Msa0288370:intron | 25.0% |
| ! | AAAGAAGTAATTAATGCACT+TGG | - | chr2_3:33337663-33337682 | Msa0288370:intron | 25.0% |
| ! | GCAAAAAAGTCATATGAAAA+TGG | - | chr2_3:33337691-33337710 | Msa0288370:intron | 25.0% |
| !! | AACAAGTTTTCATCAAAAAG+TGG | + | chr2_3:33337789-33337808 | None:intergenic | 25.0% |
| !!! | TAAAGAGTGTTTAAGTGTTT+TGG | + | chr2_3:33337828-33337847 | None:intergenic | 25.0% |
| ! | TCGTGTTGTCAATTTATTAA+AGG | + | chr2_3:33337858-33337877 | None:intergenic | 25.0% |
| ! | AGTAATTCTAACTTCTTATC+TGG | + | chr2_3:33337940-33337959 | None:intergenic | 25.0% |
| !! | AATAAATGTTTCTCTTTTCG+AGG | - | chr2_3:33338177-33338196 | Msa0288370:intron | 25.0% |
| ! | CTATAAGAATGTCAAAATAC+TGG | - | chr2_3:33338299-33338318 | Msa0288370:intron | 25.0% |
| !!! | TTGTTTTAAGAAGCTAAATG+TGG | + | chr2_3:33339220-33339239 | None:intergenic | 25.0% |
| ! | TTCTCTCACTATATCAATAA+AGG | + | chr2_3:33339675-33339694 | None:intergenic | 25.0% |
| !! | TCAATCATTTGTTTAGTTTC+AGG | - | chr2_3:33339807-33339826 | Msa0288370:CDS | 25.0% |
| ! | ACTCTATTTGACATCAATAT+CGG | - | chr2_3:33340104-33340123 | Msa0288370:CDS | 25.0% |
| !!! | TTTCATATTTTTGTTGTCCT+TGG | - | chr2_3:33340411-33340430 | Msa0288370:five_prime_UTR | 25.0% |
| !!! | TTCATATTTTTGTTGTCCTT+GGG | - | chr2_3:33340412-33340431 | Msa0288370:five_prime_UTR | 25.0% |
| TGTTGGGTATAAATAGAGAA+AGG | - | chr2_3:33334487-33334506 | Msa0288370:three_prime_UTR | 30.0% | |
| AAACGAAAACGAAGGAATAA+AGG | - | chr2_3:33334519-33334538 | Msa0288370:CDS | 30.0% | |
| CGAATATGAAGGGTAATTAT+CGG | - | chr2_3:33334623-33334642 | Msa0288370:CDS | 30.0% | |
| ! | TCGTTGTCTTTTAGATATTC+CGG | + | chr2_3:33334688-33334707 | None:intergenic | 30.0% |
| AAAAGACAACGAGTTCATAT+TGG | - | chr2_3:33334696-33334715 | Msa0288370:CDS | 30.0% | |
| TTGTTCTTGTACAGTCATTT+GGG | - | chr2_3:33334869-33334888 | Msa0288370:CDS | 30.0% | |
| ! | CTTTTTAATATTTGCAGCGA+TGG | - | chr2_3:33334895-33334914 | Msa0288370:CDS | 30.0% |
| ! | GTTTTCTGTCTAATATCTAC+AGG | - | chr2_3:33334948-33334967 | Msa0288370:CDS | 30.0% |
| !!! | TTTTCTGAGCTTTTTTAACG+GGG | - | chr2_3:33335064-33335083 | Msa0288370:CDS | 30.0% |
| ! | CATGACCGGTAATAATTTTA+AGG | - | chr2_3:33335095-33335114 | Msa0288370:CDS | 30.0% |
| !! | ACCGGTAATAATTTTAAGGA+TGG | - | chr2_3:33335099-33335118 | Msa0288370:CDS | 30.0% |
| !!! | ATGGTTTTGGGTTTGATTTT+GGG | - | chr2_3:33335118-33335137 | Msa0288370:CDS | 30.0% |
| ! | TTCTCAAAACAAAGTTTTCC+AGG | - | chr2_3:33335220-33335239 | Msa0288370:intron | 30.0% |
| AATGATTAAGAAAGCAAACC+TGG | + | chr2_3:33335241-33335260 | None:intergenic | 30.0% | |
| AAAGTTAGAGACTAATTTGG+TGG | + | chr2_3:33335408-33335427 | None:intergenic | 30.0% | |
| AGAAATTTCTTACAATGACG+TGG | + | chr2_3:33335481-33335500 | None:intergenic | 30.0% | |
| TCCCATTAACATAATTCAGT+TGG | - | chr2_3:33335650-33335669 | Msa0288370:intron | 30.0% | |
| GCCAACTGAATTATGTTAAT+GGG | + | chr2_3:33335654-33335673 | None:intergenic | 30.0% | |
| TGCCAACTGAATTATGTTAA+TGG | + | chr2_3:33335655-33335674 | None:intergenic | 30.0% | |
| TACATATTTCTTGCTTGCTT+TGG | + | chr2_3:33335740-33335759 | None:intergenic | 30.0% | |
| !!! | TTTTCAAGTCTTTTCTTCCA+AGG | + | chr2_3:33335843-33335862 | None:intergenic | 30.0% |
| AACAAAAAGAGAAACAAGCT+AGG | - | chr2_3:33335905-33335924 | Msa0288370:intron | 30.0% | |
| AACGATTGCAATCTTTATGT+AGG | + | chr2_3:33336040-33336059 | None:intergenic | 30.0% | |
| !! | ACATACTTTTGAGTATAAGG+AGG | + | chr2_3:33336063-33336082 | None:intergenic | 30.0% |
| TTCTCATAGTACTCCTTTAT+CGG | + | chr2_3:33336198-33336217 | None:intergenic | 30.0% | |
| !! | TTTGCTAATTTTGGCAGAAA+CGG | + | chr2_3:33336257-33336276 | None:intergenic | 30.0% |
| TCAACTCAAACTTTGAATCA+CGG | + | chr2_3:33336838-33336857 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr2_3:33336945-33336964 | None:intergenic | 30.0% | |
| TCACTAAAGTTGTCATGAAA+TGG | - | chr2_3:33337339-33337358 | Msa0288370:intron | 30.0% | |
| ! | CTTTTGCTTATATTAGTGAC+CGG | + | chr2_3:33337403-33337422 | None:intergenic | 30.0% |
| !! | AAGGGTTTTATGATTAGAGA+CGG | - | chr2_3:33337732-33337751 | Msa0288370:intron | 30.0% |
| ATTACTTACACGACAAAACT+TGG | - | chr2_3:33337954-33337973 | Msa0288370:intron | 30.0% | |
| AAACATGGATAGAAAGAGTT+TGG | - | chr2_3:33338070-33338089 | Msa0288370:intron | 30.0% | |
| TTTAGTGTATGTTTGAATCC+AGG | - | chr2_3:33338202-33338221 | Msa0288370:intron | 30.0% | |
| !!! | TTATCCCTTTTGGAGTTATT+TGG | + | chr2_3:33338386-33338405 | None:intergenic | 30.0% |
| !!! | CTCGATTTTTTTATCCCTTT+TGG | + | chr2_3:33338396-33338415 | None:intergenic | 30.0% |
| !!! | CTTTTGTCTTAGTTTTGTCT+AGG | + | chr2_3:33338443-33338462 | None:intergenic | 30.0% |
| TTGATTCCACTATACATGAA+AGG | - | chr2_3:33338744-33338763 | Msa0288370:intron | 30.0% | |
| TATACATGAAAGGATTACCA+CGG | - | chr2_3:33338754-33338773 | Msa0288370:intron | 30.0% | |
| TGTTCAGCTATTCTCTTAAA+TGG | + | chr2_3:33338951-33338970 | None:intergenic | 30.0% | |
| GAGAAAAGATTTCTTTGTCA+GGG | + | chr2_3:33338984-33339003 | None:intergenic | 30.0% | |
| TGAGAAAAGATTTCTTTGTC+AGG | + | chr2_3:33338985-33339004 | None:intergenic | 30.0% | |
| GTTTGATTGCATATATAGCA+AGG | + | chr2_3:33339054-33339073 | None:intergenic | 30.0% | |
| !! | GTTTATTGATTCATAGTCTG+AGG | + | chr2_3:33339371-33339390 | None:intergenic | 30.0% |
| TTGACTATAACATTACTCTC+TGG | + | chr2_3:33339478-33339497 | None:intergenic | 30.0% | |
| AGAGAGTAATGTTATAGTCA+AGG | - | chr2_3:33339477-33339496 | Msa0288370:intron | 30.0% | |
| !!! | TGGAAGTATCCATTTTTGAT+AGG | - | chr2_3:33339851-33339870 | Msa0288370:intron | 30.0% |
| !!! | GGAAGTATCCATTTTTGATA+GGG | - | chr2_3:33339852-33339871 | Msa0288370:intron | 30.0% |
| CAGAAAAACACGTAGTAAAT+TGG | + | chr2_3:33340066-33340085 | None:intergenic | 30.0% | |
| AAGGAATAAAGATGCTCTAA+AGG | + | chr2_3:33340193-33340212 | None:intergenic | 30.0% | |
| AGCATCTTTATTCCTTTCAA+TGG | - | chr2_3:33340197-33340216 | Msa0288370:intron | 30.0% | |
| GCATCTTTATTCCTTTCAAT+GGG | - | chr2_3:33340198-33340217 | Msa0288370:intron | 30.0% | |
| AATTGGATATGAGCTCTTAA+TGG | - | chr2_3:33340290-33340309 | Msa0288370:CDS | 30.0% | |
| ATTGGATATGAGCTCTTAAT+GGG | - | chr2_3:33340291-33340310 | Msa0288370:CDS | 30.0% | |
| !! | TCATATTTTTGTTGTCCTTG+GGG | - | chr2_3:33340413-33340432 | Msa0288370:five_prime_UTR | 30.0% |
| !! | TTGTCATAATCGATTTTCGA+AGG | - | chr2_3:33340460-33340479 | Msa0288370:five_prime_UTR | 30.0% |
| ATTACAACAATCCATTGGTA+GGG | + | chr2_3:33340574-33340593 | None:intergenic | 30.0% | |
| CGAACAAACATAGTCATATG+AGG | + | chr2_3:33334466-33334485 | None:intergenic | 35.0% | |
| TGACTATGTTTGTTCGTTGT+TGG | - | chr2_3:33334470-33334489 | Msa0288370:three_prime_UTR | 35.0% | |
| GACTATGTTTGTTCGTTGTT+GGG | - | chr2_3:33334471-33334490 | Msa0288370:three_prime_UTR | 35.0% | |
| GAGTAACAAAACGAAAACGA+AGG | - | chr2_3:33334511-33334530 | Msa0288370:CDS | 35.0% | |
| TAATTACCCTTCATATTCGC+CGG | + | chr2_3:33334622-33334641 | None:intergenic | 35.0% | |
| ATATGAAGGGTAATTATCGG+CGG | - | chr2_3:33334626-33334645 | Msa0288370:CDS | 35.0% | |
| CATATTGGATTATTACCGGT+CGG | - | chr2_3:33334711-33334730 | Msa0288370:CDS | 35.0% | |
| ACAACGAAACGCTAAATGTT+TGG | - | chr2_3:33334776-33334795 | Msa0288370:CDS | 35.0% | |
| AACAACAACGATGTCAAACA+TGG | + | chr2_3:33334851-33334870 | None:intergenic | 35.0% | |
| GTTGTTCTTGTACAGTCATT+TGG | - | chr2_3:33334868-33334887 | Msa0288370:CDS | 35.0% | |
| TTTAATATTTGCAGCGATGG+CGG | - | chr2_3:33334898-33334917 | Msa0288370:CDS | 35.0% | |
| !!! | GATGGTTTTGGGTTTGATTT+TGG | - | chr2_3:33335117-33335136 | Msa0288370:CDS | 35.0% |
| !!! | TGGTTTTGGGTTTGATTTTG+GGG | - | chr2_3:33335119-33335138 | Msa0288370:CDS | 35.0% |
| !! | TAATTTGGTGGTTTGCTCAT+TGG | + | chr2_3:33335396-33335415 | None:intergenic | 35.0% |
| AACGATAGGAACCAATTTCA+TGG | - | chr2_3:33335604-33335623 | Msa0288370:intron | 35.0% | |
| AACATAATTCAGTTGGCACT+TGG | - | chr2_3:33335657-33335676 | Msa0288370:intron | 35.0% | |
| ! | CTAGAAAGACTTGCTTGATT+TGG | + | chr2_3:33335814-33335833 | None:intergenic | 35.0% |
| GACAAAGTCCAACATAAACA+AGG | - | chr2_3:33335880-33335899 | Msa0288370:intron | 35.0% | |
| GAAAGCAATATACGTCACTT+TGG | + | chr2_3:33335988-33336007 | None:intergenic | 35.0% | |
| ATAAACCACCAAAATGCACT+AGG | - | chr2_3:33336168-33336187 | Msa0288370:intron | 35.0% | |
| !! | TTGCTAATTTTGGCAGAAAC+GGG | + | chr2_3:33336256-33336275 | None:intergenic | 35.0% |
| CATAATGATCAATTGTGCAC+AGG | + | chr2_3:33336317-33336336 | None:intergenic | 35.0% | |
| ! | TTTGGAAAGTGTATTTGGCT+CGG | - | chr2_3:33336731-33336750 | Msa0288370:intron | 35.0% |
| CAACTCAAACTTTGAATCAC+GGG | + | chr2_3:33336837-33336856 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr2_3:33336946-33336965 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr2_3:33337162-33337181 | Msa0288370:intron | 35.0% | |
| CATTAATAAAGTACACCCTC+CGG | - | chr2_3:33337381-33337400 | Msa0288370:intron | 35.0% | |
| ! | TTTGTTATATTAGTGACCGG+AGG | - | chr2_3:33337506-33337525 | Msa0288370:intron | 35.0% |
| TTATGATTAGAGACGGAGAT+AGG | - | chr2_3:33337739-33337758 | Msa0288370:intron | 35.0% | |
| TGGATAGAAAGAGTTTGGTT+TGG | - | chr2_3:33338075-33338094 | Msa0288370:intron | 35.0% | |
| !!! | AGTTTGGTTTGGTTGTGTTT+TGG | - | chr2_3:33338086-33338105 | Msa0288370:intron | 35.0% |
| !!! | GTTGTGTTTTGGTTACAGTT+TGG | - | chr2_3:33338097-33338116 | Msa0288370:intron | 35.0% |
| GATGCCAAATAACTCCAAAA+GGG | - | chr2_3:33338379-33338398 | Msa0288370:intron | 35.0% | |
| !! | GTGGCTTTTAGTTGTTATCT+TGG | + | chr2_3:33338421-33338440 | None:intergenic | 35.0% |
| !!! | TTGTCTTAGTTTTGTCTAGG+TGG | + | chr2_3:33338440-33338459 | None:intergenic | 35.0% |
| TACGCTGGAAAAGTTCAATT+TGG | + | chr2_3:33338524-33338543 | None:intergenic | 35.0% | |
| GTCTCTTTCTTTCTGATCTT+TGG | + | chr2_3:33338565-33338584 | None:intergenic | 35.0% | |
| GATGTTTCTTGCATTGTCTA+CGG | + | chr2_3:33338631-33338650 | None:intergenic | 35.0% | |
| !!! | AGGATTTTGAGATACAACCA+AGG | - | chr2_3:33338678-33338697 | Msa0288370:intron | 35.0% |
| GGTAATCCTTTCATGTATAG+TGG | + | chr2_3:33338753-33338772 | None:intergenic | 35.0% | |
| TGATTTAGAAATACAAGCCG+TGG | + | chr2_3:33338774-33338793 | None:intergenic | 35.0% | |
| GACATATTTGAGCTGATCTA+AGG | + | chr2_3:33338805-33338824 | None:intergenic | 35.0% | |
| ATCTTCGACTATTGCAATCT+CGG | + | chr2_3:33338889-33338908 | None:intergenic | 35.0% | |
| GCATATTATGCAGTGCAATA+TGG | + | chr2_3:33339093-33339112 | None:intergenic | 35.0% | |
| ! | ATTGATTCATAGTCTGAGGA+GGG | + | chr2_3:33339367-33339386 | None:intergenic | 35.0% |
| !! | TATTGATTCATAGTCTGAGG+AGG | + | chr2_3:33339368-33339387 | None:intergenic | 35.0% |
| !! | TTCACGTTTGAGACAGATTT+TGG | - | chr2_3:33339831-33339850 | Msa0288370:intron | 35.0% |
| TTCTCTCACCCTATCAAAAA+TGG | + | chr2_3:33339863-33339882 | None:intergenic | 35.0% | |
| TTTGATAGGGTGAGAGAATA+TGG | - | chr2_3:33339865-33339884 | Msa0288370:intron | 35.0% | |
| GAACAGAAACAATTCCAAGA+TGG | - | chr2_3:33339887-33339906 | Msa0288370:intron | 35.0% | |
| ! | AAAAAACAGGCTAAAGCGTT+TGG | + | chr2_3:33339989-33340008 | None:intergenic | 35.0% |
| !!! | AACGCTTTAGCCTGTTTTTT+TGG | - | chr2_3:33339989-33340008 | Msa0288370:intron | 35.0% |
| AATCTAGACGCCAAAAAAAC+AGG | + | chr2_3:33340002-33340021 | None:intergenic | 35.0% | |
| GTAGTAAATTGGAGCATAGA+AGG | + | chr2_3:33340055-33340074 | None:intergenic | 35.0% | |
| AAATAGAGTAACCTTGCGTA+AGG | + | chr2_3:33340093-33340112 | None:intergenic | 35.0% | |
| TGATTATTGCCATTACTCCT+AGG | + | chr2_3:33340131-33340150 | None:intergenic | 35.0% | |
| !! | TTCCTTTCAATGGGTTTTTC+AGG | - | chr2_3:33340207-33340226 | Msa0288370:intron | 35.0% |
| TACCTGAAAAACCCATTGAA+AGG | + | chr2_3:33340212-33340231 | None:intergenic | 35.0% | |
| !!! | GGGTTTTTCAGGTATTATTC+CGG | - | chr2_3:33340218-33340237 | Msa0288370:CDS | 35.0% |
| !!! | TTTTTCAGGTATTATTCCGG+CGG | - | chr2_3:33340221-33340240 | Msa0288370:CDS | 35.0% |
| TCGCATATTGTAGTTGCAAT+TGG | - | chr2_3:33340273-33340292 | Msa0288370:CDS | 35.0% | |
| TAACTAGAATACCAGAGAGA+TGG | - | chr2_3:33340346-33340365 | Msa0288370:CDS | 35.0% | |
| GACTAGTAAAATGCACATGT+GGG | + | chr2_3:33340492-33340511 | None:intergenic | 35.0% | |
| AGACTAGTAAAATGCACATG+TGG | + | chr2_3:33340493-33340512 | None:intergenic | 35.0% | |
| CATTACAACAATCCATTGGT+AGG | + | chr2_3:33340575-33340594 | None:intergenic | 35.0% | |
| ! | AGATTTTCCGGCGAATATGA+AGG | - | chr2_3:33334612-33334631 | Msa0288370:CDS | 40.0% |
| ! | GATTTTCCGGCGAATATGAA+GGG | - | chr2_3:33334613-33334632 | Msa0288370:CDS | 40.0% |
| TTCTTGTACAGTCATTTGGG+AGG | - | chr2_3:33334872-33334891 | Msa0288370:CDS | 40.0% | |
| !!! | GGTTTTGGGTTTGATTTTGG+GGG | - | chr2_3:33335120-33335139 | Msa0288370:CDS | 40.0% |
| !! | GTTTGATTTTGGGGGTTTGT+TGG | - | chr2_3:33335128-33335147 | Msa0288370:CDS | 40.0% |
| AAGACGGGAAAACAGATCAA+CGG | - | chr2_3:33335191-33335210 | Msa0288370:intron | 40.0% | |
| !! | GTGCATTTTGGTGGTTTATG+AGG | + | chr2_3:33336167-33336186 | None:intergenic | 40.0% |
| ! | TTGGAAAGTGTATTTGGCTC+GGG | - | chr2_3:33336732-33336751 | Msa0288370:intron | 40.0% |
| AAGGTAAGCTACGAAAACGT+TGG | - | chr2_3:33336755-33336774 | Msa0288370:intron | 40.0% | |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr2_3:33336941-33336960 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr2_3:33337399-33337418 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr2_3:33337400-33337419 | None:intergenic | 40.0% | |
| TTATATTAGTGACCGGAGGA+GGG | - | chr2_3:33337510-33337529 | Msa0288370:intron | 40.0% | |
| AACTATAATACACCCTCCTC+CGG | + | chr2_3:33337525-33337544 | None:intergenic | 40.0% | |
| TGTATGTTTGAATCCAGGTC+AGG | - | chr2_3:33338207-33338226 | Msa0288370:intron | 40.0% | |
| CTTCAAAAGAAAACCTGACC+TGG | + | chr2_3:33338223-33338242 | None:intergenic | 40.0% | |
| !! | GGTCAGGTTTTCTTTTGAAG+AGG | - | chr2_3:33338223-33338242 | Msa0288370:intron | 40.0% |
| GGTAAGATCAAAGATTGCAG+AGG | - | chr2_3:33338321-33338340 | Msa0288370:intron | 40.0% | |
| !!! | TGTTGTTTTTGGTGCTCAGA+GGG | + | chr2_3:33338354-33338373 | None:intergenic | 40.0% |
| !!! | TTGTTGTTTTTGGTGCTCAG+AGG | + | chr2_3:33338355-33338374 | None:intergenic | 40.0% |
| GGATGCCAAATAACTCCAAA+AGG | - | chr2_3:33338378-33338397 | Msa0288370:intron | 40.0% | |
| !! | ACTTTGGAGCTTTCACTCTT+TGG | + | chr2_3:33338474-33338493 | None:intergenic | 40.0% |
| TTTGTTCGTGATCAATACGC+TGG | + | chr2_3:33338539-33338558 | None:intergenic | 40.0% | |
| CAGAAAGAAAGAGACACCTT+AGG | - | chr2_3:33338570-33338589 | Msa0288370:intron | 40.0% | |
| ACTACTACTCCGAAACCAAA+CGG | - | chr2_3:33338652-33338671 | Msa0288370:intron | 40.0% | |
| ! | AATCCTAGTCCGTTTGGTTT+CGG | + | chr2_3:33338664-33338683 | None:intergenic | 40.0% |
| TCTCAAAATCCTAGTCCGTT+TGG | + | chr2_3:33338670-33338689 | None:intergenic | 40.0% | |
| GCGCTTTAGTTGTGTGTTAT+CGG | + | chr2_3:33338722-33338741 | None:intergenic | 40.0% | |
| TTGCAATCTCGGGAATCTAT+GGG | + | chr2_3:33338878-33338897 | None:intergenic | 40.0% | |
| ATTGCAATCTCGGGAATCTA+TGG | + | chr2_3:33338879-33338898 | None:intergenic | 40.0% | |
| TCTTCGACTATTGCAATCTC+GGG | + | chr2_3:33338888-33338907 | None:intergenic | 40.0% | |
| AAAGATTTCTTTGTCAGGGC+AGG | + | chr2_3:33338980-33338999 | None:intergenic | 40.0% | |
| TTGCATATATAGCAAGGTGC+TGG | + | chr2_3:33339048-33339067 | None:intergenic | 40.0% | |
| ! | GTTTTGTCTGTAACAGATGC+AGG | + | chr2_3:33339115-33339134 | None:intergenic | 40.0% |
| !! | TTCAAGTTGACAGCAAGAAG+AGG | + | chr2_3:33339182-33339201 | None:intergenic | 40.0% |
| TTGATTCATAGTCTGAGGAG+GGG | + | chr2_3:33339366-33339385 | None:intergenic | 40.0% | |
| GTCTGAAAAATCCGAAGTTG+CGG | + | chr2_3:33339404-33339423 | None:intergenic | 40.0% | |
| TTAAATCCTAGAGCGTGTCT+CGG | + | chr2_3:33339452-33339471 | None:intergenic | 40.0% | |
| AAACAATTCCAAGATGGCCA+TGG | - | chr2_3:33339893-33339912 | Msa0288370:intron | 40.0% | |
| AAAATGAACCATGGCCATCT+TGG | + | chr2_3:33339904-33339923 | None:intergenic | 40.0% | |
| ! | TGGCCATGGTTCATTTTCTT+AGG | - | chr2_3:33339907-33339926 | Msa0288370:intron | 40.0% |
| CCACCTAAGAAAATGAACCA+TGG | + | chr2_3:33339913-33339932 | None:intergenic | 40.0% | |
| ! | CCATGGTTCATTTTCTTAGG+TGG | - | chr2_3:33339910-33339929 | Msa0288370:intron | 40.0% |
| ! | TGGTTCATTTTCTTAGGTGG+AGG | - | chr2_3:33339913-33339932 | Msa0288370:intron | 40.0% |
| !! | GTGTTGCTTACTTTGCAGTT+CGG | - | chr2_3:33339939-33339958 | Msa0288370:intron | 40.0% |
| ! | TTTTGGCGTCTAGATTATGC+TGG | - | chr2_3:33340006-33340025 | Msa0288370:intron | 40.0% |
| ! | TTTTCTGCAATCCTTACGCA+AGG | - | chr2_3:33340079-33340098 | Msa0288370:CDS | 40.0% |
| TTGACATCAATATCGGTCCT+AGG | - | chr2_3:33340111-33340130 | Msa0288370:CDS | 40.0% | |
| AATATCGGTCCTAGGAGTAA+TGG | - | chr2_3:33340119-33340138 | Msa0288370:intron | 40.0% | |
| ! | TGAAAGTGATGGGGAAAGAA+GGG | + | chr2_3:33340154-33340173 | None:intergenic | 40.0% |
| ! | ATGAAAGTGATGGGGAAAGA+AGG | + | chr2_3:33340155-33340174 | None:intergenic | 40.0% |
| ATCGAGGTGATGAAAGTGAT+GGG | + | chr2_3:33340164-33340183 | None:intergenic | 40.0% | |
| AATCGAGGTGATGAAAGTGA+TGG | + | chr2_3:33340165-33340184 | None:intergenic | 40.0% | |
| TTCATGCTCTCGTAAGCAAT+TGG | - | chr2_3:33340244-33340263 | Msa0288370:CDS | 40.0% | |
| TCATGCTCTCGTAAGCAATT+GGG | - | chr2_3:33340245-33340264 | Msa0288370:CDS | 40.0% | |
| ATGGGCATTCTATATGCAAC+AGG | - | chr2_3:33340309-33340328 | Msa0288370:CDS | 40.0% | |
| AACAATCCATTGGTAGGGTT+TGG | + | chr2_3:33340569-33340588 | None:intergenic | 40.0% | |
| CCTGCATTACAACAATCCAT+TGG | + | chr2_3:33340579-33340598 | None:intergenic | 40.0% | |
| !! | CCAATGGATTGTTGTAATGC+AGG | - | chr2_3:33340576-33340595 | Msa0288370:five_prime_UTR | 40.0% |
| ! | AGGAATAAAGGTGCAAGCGA+CGG | - | chr2_3:33334531-33334550 | Msa0288370:CDS | 45.0% |
| TGGATTATTACCGGTCGGAA+TGG | - | chr2_3:33334716-33334735 | Msa0288370:CDS | 45.0% | |
| !! | GGTTTGTTGGTGTGTGATGT+GGG | - | chr2_3:33335141-33335160 | Msa0288370:CDS | 45.0% |
| ! | AGTCTTTCTAGCACAAGCCT+TGG | - | chr2_3:33335823-33335842 | Msa0288370:intron | 45.0% |
| ! | GATCACCTAGTGCATTTTGG+TGG | + | chr2_3:33336176-33336195 | None:intergenic | 45.0% |
| ! | TCGGATCACCTAGTGCATTT+TGG | + | chr2_3:33336179-33336198 | None:intergenic | 45.0% |
| TGCACTAGGTGATCCGATAA+AGG | - | chr2_3:33336182-33336201 | Msa0288370:intron | 45.0% | |
| CAATTGTGCACAGGAGATTG+TGG | + | chr2_3:33336308-33336327 | None:intergenic | 45.0% | |
| !! | AAAGTGTATTTGGCTCGGGA+AGG | - | chr2_3:33336736-33336755 | Msa0288370:intron | 45.0% |
| TTGGCCTATCCAGGATAAGT+GGG | - | chr2_3:33336774-33336793 | Msa0288370:intron | 45.0% | |
| GGAAGAACAGAGACTACATG+GGG | + | chr2_3:33336816-33336835 | None:intergenic | 45.0% | |
| GGGAAGAACAGAGACTACAT+GGG | + | chr2_3:33336817-33336836 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr2_3:33337166-33337185 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr2_3:33336959-33336978 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr2_3:33337166-33337185 | Msa0288370:intron | 45.0% | |
| GTTATATTAGTGACCGGAGG+AGG | - | chr2_3:33337509-33337528 | Msa0288370:intron | 45.0% | |
| !!! | GTTGTTTTTGGTGCTCAGAG+GGG | + | chr2_3:33338353-33338372 | None:intergenic | 45.0% |
| ! | TGGCTTGGAGTAAGATCCTA+AGG | + | chr2_3:33338589-33338608 | None:intergenic | 45.0% |
| GTCTTCCAGTAACTCGTTAG+TGG | + | chr2_3:33338609-33338628 | None:intergenic | 45.0% | |
| !!! | TCGCGTTTTGAGAGATTCCT+TGG | + | chr2_3:33338698-33338717 | None:intergenic | 45.0% |
| GAGTGGAATTATTGGCAGCA+AGG | + | chr2_3:33338842-33338861 | None:intergenic | 45.0% | |
| TGCCAATAATTCCACTCTCG+AGG | - | chr2_3:33338845-33338864 | Msa0288370:intron | 45.0% | |
| AGCCTCGAGAGTGGAATTAT+TGG | + | chr2_3:33338850-33338869 | None:intergenic | 45.0% | |
| TGCAATCTCGGGAATCTATG+GGG | + | chr2_3:33338877-33338896 | None:intergenic | 45.0% | |
| AAGTTGACAGCAAGAAGAGG+AGG | + | chr2_3:33339179-33339198 | None:intergenic | 45.0% | |
| !! | TGCTTTTGGTTGGAAGCAGA+GGG | + | chr2_3:33339259-33339278 | None:intergenic | 45.0% |
| TGATTCATAGTCTGAGGAGG+GGG | + | chr2_3:33339365-33339384 | None:intergenic | 45.0% | |
| CACGTTTGATCAACTTGACC+CGG | + | chr2_3:33339523-33339542 | None:intergenic | 45.0% | |
| !! | GGTCAAGTTGATCAAACGTG+CGG | - | chr2_3:33339523-33339542 | Msa0288370:intron | 45.0% |
| TCGAGGTGATGAAAGTGATG+GGG | + | chr2_3:33340163-33340182 | None:intergenic | 45.0% | |
| !! | GCTCTAAAGGTTCGAAATCG+AGG | + | chr2_3:33340180-33340199 | None:intergenic | 45.0% |
| CATGCTCTCGTAAGCAATTG+GGG | - | chr2_3:33340246-33340265 | Msa0288370:CDS | 45.0% | |
| CCTGCAATATCAAATGCTCC+AGG | + | chr2_3:33340375-33340394 | None:intergenic | 45.0% | |
| ! | CCTGGAGCATTTGATATTGC+AGG | - | chr2_3:33340372-33340391 | Msa0288370:exon | 45.0% |
| ! | GATTATGACAAGTGTCGCAG+TGG | + | chr2_3:33340451-33340470 | None:intergenic | 45.0% |
| TAGCAACCAAACCCTACCAA+TGG | - | chr2_3:33340560-33340579 | Msa0288370:five_prime_UTR | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTTTTG+AGG | + | chr2_3:33337906-33337925 | None:intergenic | 5.0% |
| !!! | TTTACTAATTAAAATTATTT+TGG | - | chr2_3:33339737-33339756 | Msa0288370:intron | 5.0% |
| ! | GGAATAAAGGTGCAAGCGAC+GGG | - | chr2_3:33334532-33334551 | Msa0288370:CDS | 50.0% |
| CCTTAACTGACCATTCCGAC+CGG | + | chr2_3:33334729-33334748 | None:intergenic | 50.0% | |
| ! | CTTTGTTCAGCGTTTTCGCG+TGG | - | chr2_3:33334752-33334771 | Msa0288370:CDS | 50.0% |
| !! | GGGTTTGTTGGTGTGTGATG+TGG | - | chr2_3:33335140-33335159 | Msa0288370:CDS | 50.0% |
| TGTGATGTGGGAGCAGAGTT+GGG | - | chr2_3:33335153-33335172 | Msa0288370:CDS | 50.0% | |
| ! | ACGAAAACGTTGGCCTATCC+AGG | - | chr2_3:33336765-33336784 | Msa0288370:intron | 50.0% |
| ! | GTTGGCCTATCCAGGATAAG+TGG | - | chr2_3:33336773-33336792 | Msa0288370:intron | 50.0% |
| CTGACCCACTTATCCTGGAT+AGG | + | chr2_3:33336781-33336800 | None:intergenic | 50.0% | |
| CTAAGCTGACCCACTTATCC+TGG | + | chr2_3:33336786-33336805 | None:intergenic | 50.0% | |
| CAGAGACTACATGGGGAGAT+GGG | + | chr2_3:33336809-33336828 | None:intergenic | 50.0% | |
| ACAGAGACTACATGGGGAGA+TGG | + | chr2_3:33336810-33336829 | None:intergenic | 50.0% | |
| CGGGAAGAACAGAGACTACA+TGG | + | chr2_3:33336818-33336837 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr2_3:33337165-33337184 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr2_3:33337165-33337184 | Msa0288370:intron | 50.0% | |
| CCAGTAACTCGTTAGTGGCT+TGG | + | chr2_3:33338604-33338623 | None:intergenic | 50.0% | |
| CCAAGCCACTAACGAGTTAC+TGG | - | chr2_3:33338601-33338620 | Msa0288370:intron | 50.0% | |
| ! | ACTCCGAAACCAAACGGACT+AGG | - | chr2_3:33338658-33338677 | Msa0288370:intron | 50.0% |
| !! | CAGCAAGGTGCATTGATTCG+AGG | + | chr2_3:33338827-33338846 | None:intergenic | 50.0% |
| !! | CAAGGTGCTGGCAGCAATAT+TGG | + | chr2_3:33339036-33339055 | None:intergenic | 50.0% |
| ACAGCAAGAAGAGGAGGCTT+TGG | + | chr2_3:33339173-33339192 | None:intergenic | 50.0% | |
| !! | GTGCTTTTGGTTGGAAGCAG+AGG | + | chr2_3:33339260-33339279 | None:intergenic | 50.0% |
| ! | TAGGGTCTGGTGCTTTTGGT+TGG | + | chr2_3:33339269-33339288 | None:intergenic | 50.0% |
| ! | CTCATAGGGTCTGGTGCTTT+TGG | + | chr2_3:33339273-33339292 | None:intergenic | 50.0% |
| GTAGAGGGGACGTTCTCATA+GGG | + | chr2_3:33339287-33339306 | None:intergenic | 50.0% | |
| TGTAGAGGGGACGTTCTCAT+AGG | + | chr2_3:33339288-33339307 | None:intergenic | 50.0% | |
| AATCCGAAGTTGCGGCAGTT+TGG | + | chr2_3:33339396-33339415 | None:intergenic | 50.0% | |
| ATGTTACCGAGACACGCTCT+AGG | - | chr2_3:33339443-33339462 | Msa0288370:intron | 50.0% | |
| AAACGTGCGGTAGAAAGCCA+CGG | - | chr2_3:33339536-33339555 | Msa0288370:intron | 50.0% | |
| AAAGCCACGGAAACGTCATG+CGG | - | chr2_3:33339549-33339568 | Msa0288370:intron | 50.0% | |
| GGAGTGGCAAGCAAGAAGAT+GGG | + | chr2_3:33339968-33339987 | None:intergenic | 50.0% | |
| TGGAGTGGCAAGCAAGAAGA+TGG | + | chr2_3:33339969-33339988 | None:intergenic | 50.0% | |
| ! | ACAGGCTAAAGCGTTTGGAG+TGG | + | chr2_3:33339984-33340003 | None:intergenic | 50.0% |
| ATACCAGAGAGATGGAAGCC+TGG | - | chr2_3:33340354-33340373 | Msa0288370:CDS | 50.0% | |
| GTCGCGATTGGTGAAGTACG+AGG | - | chr2_3:33334657-33334676 | Msa0288370:CDS | 55.0% | |
| GGTGAAGTACGAGGAACTGC+CGG | - | chr2_3:33334666-33334685 | Msa0288370:CDS | 55.0% | |
| CCGGTCGGAATGGTCAGTTA+AGG | - | chr2_3:33334726-33334745 | Msa0288370:CDS | 55.0% | |
| ACGGGGCAAGTTAGCATGAC+CGG | - | chr2_3:33335081-33335100 | Msa0288370:CDS | 55.0% | |
| GTGTGATGTGGGAGCAGAGT+TGG | - | chr2_3:33335152-33335171 | Msa0288370:CDS | 55.0% | |
| GTGATGTGGGAGCAGAGTTG+GGG | - | chr2_3:33335154-33335173 | Msa0288370:CDS | 55.0% | |
| !! | GGTGCTGGCAGCAATATTGG+TGG | + | chr2_3:33339033-33339052 | None:intergenic | 55.0% |
| !! | TGCTGCTGGCTGTGCTGTTT+CGG | + | chr2_3:33339320-33339339 | None:intergenic | 55.0% |
| TGGTGCTTTCTTGCTGCTGC+TGG | + | chr2_3:33339334-33339353 | None:intergenic | 55.0% | |
| CTGCCAAACTGCCGCAACTT+CGG | - | chr2_3:33339390-33339409 | Msa0288370:intron | 55.0% | |
| GAAACCGCATGACGTTTCCG+TGG | + | chr2_3:33339556-33339575 | None:intergenic | 55.0% | |
| ! | CTTACGAGAGCATGAACCGC+CGG | + | chr2_3:33340240-33340259 | None:intergenic | 55.0% |
| GCGGAAGAGAACGTCGCGAT+TGG | - | chr2_3:33334645-33334664 | Msa0288370:CDS | 60.0% | |
| ! | ATTTGCAGCGATGGCGGCGA+CGG | - | chr2_3:33334904-33334923 | Msa0288370:CDS | 60.0% |
| ! | TGGGGCTTTAGCCTCGAGAG+TGG | + | chr2_3:33338859-33338878 | None:intergenic | 60.0% |
| GGGGACGTTCTCATAGGGTC+TGG | + | chr2_3:33339282-33339301 | None:intergenic | 60.0% | |
| GAGAACGTCCCCTCTACAGC+AGG | - | chr2_3:33339290-33339309 | Msa0288370:intron | 60.0% | |
| TTCGGTCGGCCTGCTGTAGA+GGG | + | chr2_3:33339302-33339321 | None:intergenic | 60.0% | |
| TTTCGGTCGGCCTGCTGTAG+AGG | + | chr2_3:33339303-33339322 | None:intergenic | 60.0% | |
| !! | GCTGGCTGTGCTGTTTCGGT+CGG | + | chr2_3:33339316-33339335 | None:intergenic | 60.0% |
| GCTCCAGGCTTCCATCTCTC+TGG | + | chr2_3:33340360-33340379 | None:intergenic | 60.0% | |
| TGGCATGTGCAAGTGCCCCA+AGG | + | chr2_3:33340431-33340450 | None:intergenic | 60.0% | |
| ACGGAAGCTGGAGGAGGAGG+AGG | - | chr2_3:33334923-33334942 | Msa0288370:CDS | 65.0% | |
| GAAGCTGGAGGAGGAGGAGG+TGG | - | chr2_3:33334926-33334945 | Msa0288370:CDS | 65.0% | |
| TGGGAGCAGAGTTGGGGCGA+CGG | - | chr2_3:33335160-33335179 | Msa0288370:CDS | 65.0% | |
| GGCGACGGGGTCGTTGAAGA+CGG | - | chr2_3:33335175-33335194 | Msa0288370:CDS | 65.0% | |
| GCGACGGGGTCGTTGAAGAC+GGG | - | chr2_3:33335176-33335195 | Msa0288370:intron | 65.0% | |
| TCGGTCGGCCTGCTGTAGAG+GGG | + | chr2_3:33339301-33339320 | None:intergenic | 65.0% | |
| CTGAGGAGGGGGTCTGTCTG+TGG | + | chr2_3:33339354-33339373 | None:intergenic | 65.0% | |
| ATGGCGGCGACGGAAGCTGG+AGG | - | chr2_3:33334914-33334933 | Msa0288370:CDS | 70.0% | |
| GCGACGGAAGCTGGAGGAGG+AGG | - | chr2_3:33334920-33334939 | Msa0288370:CDS | 70.0% | |
| GGGAGCAGAGTTGGGGCGAC+GGG | - | chr2_3:33335161-33335180 | Msa0288370:CDS | 70.0% | |
| GGAGCAGAGTTGGGGCGACG+GGG | - | chr2_3:33335162-33335181 | Msa0288370:CDS | 70.0% | |
| ! | GCGATGGCGGCGACGGAAGC+TGG | - | chr2_3:33334911-33334930 | Msa0288370:CDS | 75.0% |
| GCGGCGACGGAAGCTGGAGG+AGG | - | chr2_3:33334917-33334936 | Msa0288370:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 33334378 | 33340639 | 33334378 | ID=Msa0288370;Name=Msa0288370 |
| chr2_3 | mRNA | 33334378 | 33340639 | 33334378 | ID=Msa0288370-mRNA-1;Parent=Msa0288370;Name=Msa0288370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=250|1|1|1|0.66|0.75|4|130|339 |
| chr2_3 | exon | 33334378 | 33335194 | 33334378 | ID=Msa0288370-mRNA-1:exon:11025;Parent=Msa0288370-mRNA-1 |
| chr2_3 | exon | 33339776 | 33339848 | 33339776 | ID=Msa0288370-mRNA-1:exon:11024;Parent=Msa0288370-mRNA-1 |
| chr2_3 | exon | 33340048 | 33340134 | 33340048 | ID=Msa0288370-mRNA-1:exon:11023;Parent=Msa0288370-mRNA-1 |
| chr2_3 | exon | 33340217 | 33340639 | 33340217 | ID=Msa0288370-mRNA-1:exon:11022;Parent=Msa0288370-mRNA-1 |
| chr2_3 | five_prime_UTR | 33340390 | 33340639 | 33340390 | ID=Msa0288370-mRNA-1:five_prime_utr;Parent=Msa0288370-mRNA-1 |
| chr2_3 | CDS | 33340217 | 33340389 | 33340217 | ID=Msa0288370-mRNA-1:cds;Parent=Msa0288370-mRNA-1 |
| chr2_3 | CDS | 33340048 | 33340134 | 33340048 | ID=Msa0288370-mRNA-1:cds;Parent=Msa0288370-mRNA-1 |
| chr2_3 | CDS | 33339776 | 33339848 | 33339776 | ID=Msa0288370-mRNA-1:cds;Parent=Msa0288370-mRNA-1 |
| chr2_3 | CDS | 33334508 | 33335194 | 33334508 | ID=Msa0288370-mRNA-1:cds;Parent=Msa0288370-mRNA-1 |
| chr2_3 | three_prime_UTR | 33334378 | 33334507 | 33334378 | ID=Msa0288370-mRNA-1:three_prime_utr;Parent=Msa0288370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
