Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096490 | G7JXW7 | 51.493 | 134 | 26 | 1 | 303 | 436 | 218 | 312 | 3.88e-26 | 118 |
| Msa0096490 | G7JXW7 | 90.291 | 309 | 29 | 1 | 1 | 308 | 1 | 309 | 1.35e-172 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0096490 | Msa0846760 | 0.875270 | 3.518192e-68 | -8.615850e-47 |
| Msa0096490 | Msa1183980 | 0.802146 | 6.442632e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096490 | MtrunA17_Chr5g0418651 | 90.291 | 309 | 29 | 1 | 1 | 308 | 1 | 309 | 2.61e-176 | 495 |
| Msa0096490 | MtrunA17_Chr5g0418651 | 51.493 | 134 | 26 | 1 | 303 | 436 | 218 | 312 | 7.46e-30 | 118 |
| Msa0096490 | MtrunA17_Chr4g0042991 | 42.119 | 387 | 136 | 10 | 1 | 305 | 1 | 381 | 1.39e-52 | 181 |
| Msa0096490 | MtrunA17_Chr5g0418641 | 84.000 | 75 | 11 | 1 | 8 | 81 | 1 | 75 | 1.75e-31 | 115 |
| Msa0096490 | MtrunA17_Chr5g0418631 | 62.245 | 98 | 29 | 3 | 331 | 426 | 1 | 92 | 3.01e-23 | 94.0 |
| Msa0096490 | MtrunA17_Chr5g0418631 | 56.757 | 74 | 24 | 2 | 246 | 318 | 36 | 102 | 1.70e-13 | 66.6 |
| Msa0096490 | MtrunA17_Chr3g0086051 | 34.615 | 104 | 68 | 0 | 202 | 305 | 151 | 254 | 2.02e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0096490 | AT1G13920.1 | 47.664 | 107 | 55 | 1 | 200 | 305 | 233 | 339 | 5.03e-22 | 97.1 |
| Msa0096490 | AT1G13920.1 | 34.615 | 130 | 45 | 2 | 308 | 436 | 255 | 345 | 3.04e-11 | 65.1 |
| Msa0096490 | AT1G13920.4 | 47.664 | 107 | 55 | 1 | 200 | 305 | 266 | 372 | 5.84e-22 | 97.4 |
| Msa0096490 | AT1G13920.4 | 34.615 | 130 | 45 | 2 | 308 | 436 | 288 | 378 | 3.55e-11 | 65.1 |
| Msa0096490 | AT5G61280.2 | 33.929 | 112 | 74 | 0 | 197 | 308 | 123 | 234 | 1.16e-15 | 76.6 |
| Msa0096490 | AT5G61280.1 | 33.929 | 112 | 74 | 0 | 197 | 308 | 146 | 257 | 2.14e-15 | 76.3 |
| Msa0096490 | AT1G69325.1 | 44.444 | 99 | 55 | 0 | 207 | 305 | 18 | 116 | 2.87e-13 | 66.6 |
Find 102 sgRNAs with CRISPR-Local
Find 457 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAAGGTTGAAATCTT+TGG | 0.219285 | 1_3:-2194039 | Msa0096490:CDS |
| CCAGTAGAATGGAGAATTTA+TGG | 0.262483 | 1_3:-2201028 | Msa0096490:exon |
| TAATTGGTGGTGGCGGTGGC+GGG | 0.267031 | 1_3:+2199450 | None:intergenic |
| TGCATTATCAATTAATTTGC+AGG | 0.274227 | 1_3:-2199866 | Msa0096490:CDS |
| AAATATTACCTTTGAAAGAT+TGG | 0.293146 | 1_3:+2200373 | None:intergenic |
| ATAATTGGTGGTGGCGGTGG+CGG | 0.306446 | 1_3:+2199449 | None:intergenic |
| AATTGGTGGTGGCGGTGGCG+GGG | 0.311891 | 1_3:+2199451 | None:intergenic |
| ATCTCTGAAGTCTTCATAAT+TGG | 0.323102 | 1_3:+2199434 | None:intergenic |
| TGTGGCAGTTTGCCTGTTGT+TGG | 0.346776 | 1_3:+2193780 | None:intergenic |
| ATTGGTGGTGGCGGTGGCGG+GGG | 0.361406 | 1_3:+2199452 | None:intergenic |
| TGAAAATGTTGATAGATTCC+TGG | 0.363230 | 1_3:-2199179 | Msa0096490:CDS |
| CTTGTAGCTCTTCAATTCTT+CGG | 0.364293 | 1_3:+2193826 | None:intergenic |
| AGCTTGGCCGATGAGGCCTC+CGG | 0.366801 | 1_3:+2199817 | None:intergenic |
| CCTGTTGTAGTCTGTCTTAG+AGG | 0.376234 | 1_3:+2199404 | None:intergenic |
| TTCCTTCACTAGCTTGCGTT+TGG | 0.377600 | 1_3:+2194330 | None:intergenic |
| TTTGTTAGGGTACAACTTAC+CGG | 0.378969 | 1_3:-2200459 | Msa0096490:intron |
| ACGGAGAAGGTTAAAAGCTT+TGG | 0.381346 | 1_3:-2198901 | Msa0096490:CDS |
| CCATAAATTCTCCATTCTAC+TGG | 0.390458 | 1_3:+2201028 | None:intergenic |
| AATATTACCTTTGAAAGATT+GGG | 0.397926 | 1_3:+2200374 | None:intergenic |
| TTGCTTCATTAGCTTGCGTT+TGG | 0.400523 | 1_3:+2199134 | None:intergenic |
| TAGTGCATCCAAGCGATTAT+CGG | 0.415944 | 1_3:-2199749 | Msa0096490:CDS |
| ACAGCGAAGGTTGAAATCTA+AGG | 0.420778 | 1_3:-2193919 | Msa0096490:CDS |
| TTCTAAATTGCAGAGTGAAA+TGG | 0.423619 | 1_3:-2198925 | Msa0096490:intron |
| AGGAAAGCCAAAAGAAAATT+CGG | 0.429597 | 1_3:-2193953 | Msa0096490:CDS |
| GGAAAGAGTTGATAGATTCA+TGG | 0.429602 | 1_3:-2194375 | Msa0096490:CDS |
| AAACAGCTTTCAGGTAAAAC+AGG | 0.436606 | 1_3:-2199940 | Msa0096490:CDS |
| GTAGTCTGTCTTAGAGGATC+AGG | 0.438277 | 1_3:+2199410 | None:intergenic |
| AGAAGAAGAAGGGCCAGAAT+TGG | 0.439656 | 1_3:-2199969 | Msa0096490:CDS |
| CCTCTAAGACAGACTACAAC+AGG | 0.445039 | 1_3:-2199404 | Msa0096490:CDS |
| AATGAAGAGCTACAAGCAAA+AGG | 0.447061 | 1_3:-2198801 | Msa0096490:CDS |
| TTCATAATTGGTGGTGGCGG+TGG | 0.460521 | 1_3:+2199446 | None:intergenic |
| GGGAGACAGATGCAGATGAA+TGG | 0.461311 | 1_3:-2199370 | Msa0096490:CDS |
| TTTCTATGTGGTCGTAATCA+TGG | 0.462345 | 1_3:+2199917 | None:intergenic |
| ATCTTTACCCGATAATCGCT+TGG | 0.462904 | 1_3:+2199741 | None:intergenic |
| CATTGTTGGCGTAGGAGTAA+TGG | 0.466358 | 1_3:+2199538 | None:intergenic |
| TGAGCAGAAGAGTGAGAGCC+CGG | 0.469018 | 1_3:-2199836 | Msa0096490:CDS |
| GCTTGGCCGATGAGGCCTCC+GGG | 0.477470 | 1_3:+2199818 | None:intergenic |
| CTACAACAGGATCAAACAAT+GGG | 0.477695 | 1_3:-2199391 | Msa0096490:CDS |
| GAGGAGAACAAAGCTGATCT+TGG | 0.481626 | 1_3:-2200432 | Msa0096490:CDS |
| TGCAGATGCAGCGAGATTCA+AGG | 0.481656 | 1_3:-2193859 | Msa0096490:CDS |
| ACAAAACCCTCCCAGTAGAA+TGG | 0.487032 | 1_3:-2201039 | Msa0096490:exon |
| GCAAGTACAATTCCAACAAC+AGG | 0.488219 | 1_3:-2193792 | Msa0096490:CDS |
| AGTGCATCCAAGCGATTATC+GGG | 0.489926 | 1_3:-2199748 | Msa0096490:intron |
| ATTCATGGGAAGACAAGAAA+AGG | 0.490794 | 1_3:-2194360 | Msa0096490:CDS |
| ATTCCTGGGAAGACAAGAAA+AGG | 0.490794 | 1_3:-2199164 | Msa0096490:CDS |
| TGATTACGACCACATAGAAA+TGG | 0.492344 | 1_3:-2199914 | Msa0096490:CDS |
| GAAAATGTTGATAGATTCCT+GGG | 0.493456 | 1_3:-2199178 | Msa0096490:CDS |
| GAAAGAGTTGATAGATTCAT+GGG | 0.495863 | 1_3:-2194374 | Msa0096490:CDS |
| TGCAGAGTGAACTTGAAGAA+AGG | 0.496563 | 1_3:-2194052 | Msa0096490:intron |
| GGAGACAGATGCAGATGAAT+GGG | 0.502514 | 1_3:-2199369 | Msa0096490:CDS |
| TGAGAGCCCGGAGGCCTCAT+CGG | 0.503947 | 1_3:-2199824 | Msa0096490:CDS |
| ATGAAGAGCTACAAGCAAAA+GGG | 0.506299 | 1_3:-2198800 | Msa0096490:CDS |
| AGCTTTGTTCTCCTCCGTAC+CGG | 0.507897 | 1_3:+2200440 | None:intergenic |
| AGTTGTAGAAGAAAAGAAAC+CGG | 0.517846 | 1_3:-2199567 | Msa0096490:CDS |
| TCTGAAGTCTTCATAATTGG+TGG | 0.519146 | 1_3:+2199437 | None:intergenic |
| AGAATTTATGGAGTCAAATG+AGG | 0.520763 | 1_3:-2201016 | Msa0096490:intron |
| ACGCAAGCTAGTGAAGGAAC+AGG | 0.521158 | 1_3:-2194326 | Msa0096490:intron |
| AATTCTCCATTCTACTGGGA+GGG | 0.531614 | 1_3:+2201033 | None:intergenic |
| CATAAATTCTCCATTCTACT+GGG | 0.545165 | 1_3:+2201029 | None:intergenic |
| CGGAGCAAATGCCAAGGCTG+AGG | 0.545337 | 1_3:-2193973 | Msa0096490:CDS |
| AGAAGAAAAGAAACCGGAAA+AGG | 0.548483 | 1_3:-2199561 | Msa0096490:CDS |
| GTCTTCATAATTGGTGGTGG+CGG | 0.550990 | 1_3:+2199443 | None:intergenic |
| ATTTAGATCTAAAGATGACC+AGG | 0.556568 | 1_3:-2199612 | Msa0096490:CDS |
| GCTTGGATGCACTACTGAGA+AGG | 0.556868 | 1_3:+2199758 | None:intergenic |
| GAAGTCTTCATAATTGGTGG+TGG | 0.559569 | 1_3:+2199440 | None:intergenic |
| TGCAGACGGCGCAAGAGCAA+AGG | 0.562482 | 1_3:-2198841 | Msa0096490:CDS |
| CAGAAAACCCAATCTTTCAA+AGG | 0.570940 | 1_3:-2200381 | Msa0096490:intron |
| ATCTTGGTGCCACAAGAGAT+CGG | 0.579109 | 1_3:-2200416 | Msa0096490:CDS |
| CGGCGCAAGAGCAAAGGTCG+AGG | 0.580597 | 1_3:-2198835 | Msa0096490:CDS |
| ACATTGTCAGGTATGAGAAG+TGG | 0.585278 | 1_3:-2194396 | Msa0096490:intron |
| ATGTTCAACAGAGAAGAAGA+AGG | 0.587013 | 1_3:-2199980 | Msa0096490:intron |
| ATGTTGACGCCTTGTCACCC+TGG | 0.599021 | 1_3:+2199594 | None:intergenic |
| AGCCAAACGCAAGCTAGTGA+AGG | 0.599861 | 1_3:-2194332 | Msa0096490:CDS |
| CTTGGATGCACTACTGAGAA+GGG | 0.599961 | 1_3:+2199759 | None:intergenic |
| GGAGTGAACTTGAACAGCGA+AGG | 0.600312 | 1_3:-2193932 | Msa0096490:CDS |
| AGAGTGAAATGGAACGGAGA+AGG | 0.604934 | 1_3:-2198914 | Msa0096490:CDS |
| TAGGGTACAACTTACCGGTA+CGG | 0.607951 | 1_3:-2200454 | Msa0096490:CDS |
| AAGCTCAAAAGCAAGGTGGA+CGG | 0.608433 | 1_3:-2199799 | Msa0096490:CDS |
| AATTGCAGAGTGAAATGGAA+CGG | 0.610000 | 1_3:-2198920 | Msa0096490:intron |
| TAAAGATGACCAGGGTGACA+AGG | 0.610189 | 1_3:-2199603 | Msa0096490:CDS |
| ATCGGCCAAGCTCAAAAGCA+AGG | 0.610955 | 1_3:-2199806 | Msa0096490:CDS |
| ACGCAAGCTAATGAAGCAAG+AGG | 0.611713 | 1_3:-2199130 | Msa0096490:intron |
| ACTACAACAGGATCAAACAA+TGG | 0.614774 | 1_3:-2199392 | Msa0096490:CDS |
| AGGAGGAGCATTTGGCGCTG+TGG | 0.618095 | 1_3:+2199478 | None:intergenic |
| GAACAGCATGCAAACTGCCA+CGG | 0.622376 | 1_3:-2198761 | Msa0096490:CDS |
| AAATTCTCCATTCTACTGGG+AGG | 0.626794 | 1_3:+2201032 | None:intergenic |
| TGTTCAACAGAGAAGAAGAA+GGG | 0.638777 | 1_3:-2199979 | Msa0096490:intron |
| TATGTAAAACTAGTTGCAGA+CGG | 0.645184 | 1_3:-2193993 | Msa0096490:CDS |
| AGAGCTACAAGCAAGAGAGA+AGG | 0.645591 | 1_3:-2193814 | Msa0096490:CDS |
| TATGTAAATCTAGTTGCAGA+CGG | 0.648425 | 1_3:-2198855 | Msa0096490:CDS |
| CAGCATGCACCATTTCTATG+TGG | 0.651802 | 1_3:+2199905 | None:intergenic |
| CAAATTAATTGATAATGCAG+CGG | 0.651965 | 1_3:+2199870 | None:intergenic |
| CAGAAGCAGAAATACTTCTG+TGG | 0.654497 | 1_3:+2193762 | None:intergenic |
| TGCAGACGGAGCAAATGCCA+AGG | 0.660983 | 1_3:-2193979 | Msa0096490:CDS |
| AGAGCTACAAGCAAAAGGGA+AGG | 0.666489 | 1_3:-2198796 | Msa0096490:CDS |
| GCAGAAGAGTGAGAGCCCGG+AGG | 0.674160 | 1_3:-2199833 | Msa0096490:CDS |
| TTTAGATCTAAAGATGACCA+GGG | 0.678368 | 1_3:-2199611 | Msa0096490:CDS |
| AACTCGACAAGATCAAACAA+AGG | 0.689212 | 1_3:-2199337 | Msa0096490:intron |
| GGTACAACTTACCGGTACGG+AGG | 0.692894 | 1_3:-2200451 | Msa0096490:CDS |
| CAGAAGCAGAAATACATCCG+TGG | 0.708198 | 1_3:+2198744 | None:intergenic |
| GGCCAAGCTCAAAAGCAAGG+TGG | 0.710319 | 1_3:-2199803 | Msa0096490:CDS |
| TACAACAGGATCAAACAATG+GGG | 0.783663 | 1_3:-2199390 | Msa0096490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTCAAAAAAAATAGTT+AGG | - | chr1_3:2194248-2194267 | Msa0096490:intron | 10.0% |
| !! | TTATTCAAAAAAAATAGTTA+GGG | - | chr1_3:2194249-2194268 | Msa0096490:intron | 10.0% |
| !!! | TAATAATTACTTTTTTTTGA+AGG | - | chr1_3:2199637-2199656 | Msa0096490:intron | 10.0% |
| !!! | AATTAATAATTACTTTTAGA+TGG | - | chr1_3:2199661-2199680 | Msa0096490:intron | 10.0% |
| !!! | TTTCTTTTCCTTTTATTTTT+TGG | + | chr1_3:2194734-2194753 | None:intergenic | 15.0% |
| !!! | AAGTTTATTTTGTTACAAAT+TGG | + | chr1_3:2196548-2196567 | None:intergenic | 15.0% |
| !!! | TCACTTATATATAGATTTTT+AGG | + | chr1_3:2196624-2196643 | None:intergenic | 15.0% |
| !!! | TTCTTATACATTTTATTGTA+TGG | - | chr1_3:2197591-2197610 | Msa0096490:intron | 15.0% |
| !!! | TTGAAAAAGCTAATTTTTTA+AGG | - | chr1_3:2197695-2197714 | Msa0096490:intron | 15.0% |
| !!! | TCTAAAAGAATAGTTTTTTT+AGG | - | chr1_3:2198434-2198453 | Msa0096490:intron | 15.0% |
| !!! | CTAAAAGAATAGTTTTTTTA+GGG | - | chr1_3:2198435-2198454 | Msa0096490:intron | 15.0% |
| !!! | TGAAATTTTAGAGAAAAAAT+TGG | - | chr1_3:2199813-2199832 | Msa0096490:CDS | 15.0% |
| !!! | GAAATTTTAGAGAAAAAATT+GGG | - | chr1_3:2199814-2199833 | Msa0096490:CDS | 15.0% |
| !! | CTTTAAACATGTTATAATTA+TGG | - | chr1_3:2199965-2199984 | Msa0096490:CDS | 15.0% |
| !! | TAAAAAAAAAAAAACTAGAG+AGG | - | chr1_3:2200674-2200693 | Msa0096490:intron | 15.0% |
| !! | TACAATATTTACCATGTTAA+TGG | - | chr1_3:2193914-2193933 | Msa0096490:CDS | 20.0% |
| !! | TAAAAAGTGATTATGATGTT+TGG | + | chr1_3:2194115-2194134 | None:intergenic | 20.0% |
| !!! | ATTACATGAACAATTTTGTT+AGG | - | chr1_3:2194345-2194364 | Msa0096490:CDS | 20.0% |
| !!! | TTACATGAACAATTTTGTTA+GGG | - | chr1_3:2194346-2194365 | Msa0096490:CDS | 20.0% |
| !!! | AATATTACCTTTGAAAGATT+GGG | + | chr1_3:2194447-2194466 | None:intergenic | 20.0% |
| !!! | AAATATTACCTTTGAAAGAT+TGG | + | chr1_3:2194448-2194467 | None:intergenic | 20.0% |
| !! | ATAATAAAGAGGAAAAGAAA+AGG | - | chr1_3:2194630-2194649 | Msa0096490:intron | 20.0% |
| !! | ATTATGATTCATAAATGAAG+TGG | + | chr1_3:2195112-2195131 | None:intergenic | 20.0% |
| !!! | GTTTTTCTACTTAAGAATAA+TGG | + | chr1_3:2195137-2195156 | None:intergenic | 20.0% |
| !! | TATTAATGAAAAACATTGTC+AGG | - | chr1_3:2195606-2195625 | Msa0096490:intron | 20.0% |
| !! | AATGATAAAAGAAACTAGAA+AGG | - | chr1_3:2195821-2195840 | Msa0096490:intron | 20.0% |
| !!! | TCACTAGCTTTATAATATTT+TGG | + | chr1_3:2196359-2196378 | None:intergenic | 20.0% |
| !! | AAAGATTATTAGCTAATGAA+AGG | - | chr1_3:2196777-2196796 | Msa0096490:intron | 20.0% |
| !! | ATATTACAATGCTTACAATA+GGG | + | chr1_3:2196826-2196845 | None:intergenic | 20.0% |
| !! | AATATTACAATGCTTACAAT+AGG | + | chr1_3:2196827-2196846 | None:intergenic | 20.0% |
| !! | AATAAACTTTAAACTTTCCA+AGG | - | chr1_3:2197438-2197457 | Msa0096490:intron | 20.0% |
| !!! | TTTACATGAACAATTTTGTT+AGG | - | chr1_3:2197915-2197934 | Msa0096490:intron | 20.0% |
| !!! | TTACATGAACAATTTTGTTA+GGG | - | chr1_3:2194346-2194365 | Msa0096490:CDS | 20.0% |
| !!! | AAACTATTCTTTTAGAATGA+CGG | + | chr1_3:2198430-2198449 | None:intergenic | 20.0% |
| !! | ATAAATGACAAGAAAGTAAA+GGG | + | chr1_3:2198889-2198908 | None:intergenic | 20.0% |
| !! | AATAAATGACAAGAAAGTAA+AGG | + | chr1_3:2198890-2198909 | None:intergenic | 20.0% |
| !!! | TGTAAAAAAAATTTGAGATG+TGG | + | chr1_3:2199253-2199272 | None:intergenic | 20.0% |
| !! | TATTAATGAAAAACATTGTC+AGG | - | chr1_3:2195606-2195625 | Msa0096490:intron | 20.0% |
| ! | AAATATTGTAACAACAAGCT+AGG | + | chr1_3:2193904-2193923 | None:intergenic | 25.0% |
| ! | AATATTTACCATGTTAATGG+TGG | - | chr1_3:2193917-2193936 | Msa0096490:CDS | 25.0% |
| !!! | TTGAAAAAGCTAGTTTTTCA+AGG | - | chr1_3:2193948-2193967 | Msa0096490:CDS | 25.0% |
| !! | AGAAAACATGAGATTTTCAA+TGG | + | chr1_3:2194050-2194069 | None:intergenic | 25.0% |
| !!! | TTCTCTATAGTATTGGTTAT+TGG | + | chr1_3:2194082-2194101 | None:intergenic | 25.0% |
| !!! | CTCACACCATTTTATTTTAA+GGG | - | chr1_3:2194147-2194166 | Msa0096490:intron | 25.0% |
| ! | TCAAGACCCTTAAAATAAAA+TGG | + | chr1_3:2194156-2194175 | None:intergenic | 25.0% |
| ! | TTGATATAGCTATCATTGAT+CGG | + | chr1_3:2194219-2194238 | None:intergenic | 25.0% |
| !! | AAGATGCTCATAATTTTCAT+TGG | - | chr1_3:2194313-2194332 | Msa0096490:intron | 25.0% |
| ! | TAAGATGTATCTAATGTGTT+TGG | + | chr1_3:2194514-2194533 | None:intergenic | 25.0% |
| ! | AACCATTAAGCATAATAAAG+AGG | - | chr1_3:2194619-2194638 | Msa0096490:intron | 25.0% |
| ! | TTCCTCTTTATTATGCTTAA+TGG | + | chr1_3:2194624-2194643 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+GGG | - | chr1_3:2194683-2194702 | Msa0096490:intron | 25.0% |
| !!! | CTTTTCCTTTTATTTTTTGG+TGG | + | chr1_3:2194731-2194750 | None:intergenic | 25.0% |
| !!! | CAAATTAATTGATAATGCAG+CGG | + | chr1_3:2194951-2194970 | None:intergenic | 25.0% |
| !!! | TGCATTATCAATTAATTTGC+AGG | - | chr1_3:2194952-2194971 | Msa0096490:intron | 25.0% |
| ! | TATAGCATCATGTATTGTTT+GGG | + | chr1_3:2196193-2196212 | None:intergenic | 25.0% |
| ! | TTATAGCATCATGTATTGTT+TGG | + | chr1_3:2196194-2196213 | None:intergenic | 25.0% |
| !!! | CTCAACTAAAAAGTATTATG+TGG | + | chr1_3:2196479-2196498 | None:intergenic | 25.0% |
| ! | TAGTTGAGTTTGATGAAAAT+AGG | - | chr1_3:2196491-2196510 | Msa0096490:intron | 25.0% |
| ! | GTTATAAACATCTGTCTTAA+AGG | - | chr1_3:2196580-2196599 | Msa0096490:intron | 25.0% |
| ! | AAGGAAAAATAAGATGCATT+TGG | - | chr1_3:2196796-2196815 | Msa0096490:intron | 25.0% |
| ! | TGCTTATACAACATAGATTT+GGG | - | chr1_3:2197063-2197082 | Msa0096490:intron | 25.0% |
| ! | ACTATGAGTTACATGAATAA+CGG | + | chr1_3:2197161-2197180 | None:intergenic | 25.0% |
| !!! | AAAAAGCTGCTTTACATTTT+GGG | + | chr1_3:2197410-2197429 | None:intergenic | 25.0% |
| !!! | TAAAAAGCTGCTTTACATTT+TGG | + | chr1_3:2197411-2197430 | None:intergenic | 25.0% |
| ! | ATTTAATATAGAAGAAGCCT+TGG | + | chr1_3:2197458-2197477 | None:intergenic | 25.0% |
| ! | AGTATTTACCTTGTTAATAG+TGG | - | chr1_3:2197664-2197683 | Msa0096490:intron | 25.0% |
| !! | AAGATGCTCATAATTTTCAT+CGG | - | chr1_3:2194313-2194332 | Msa0096490:intron | 25.0% |
| ! | TATATTCATGATTGTGATGT+TGG | - | chr1_3:2197999-2198018 | Msa0096490:intron | 25.0% |
| !! | TCAAGGAGTAACAATATTTT+CGG | - | chr1_3:2198217-2198236 | Msa0096490:intron | 25.0% |
| !!! | ACAATATTTTCGGGAATATT+TGG | - | chr1_3:2198227-2198246 | Msa0096490:intron | 25.0% |
| ! | TAAAATGTAGGAACATCTTT+AGG | + | chr1_3:2198268-2198287 | None:intergenic | 25.0% |
| !! | TAAAGATGTTCCTACATTTT+AGG | - | chr1_3:2198267-2198286 | Msa0096490:intron | 25.0% |
| ! | ACAAGAATCAGTAACAAATA+TGG | + | chr1_3:2198298-2198317 | None:intergenic | 25.0% |
| ! | CATATATACTGAAGCAATAT+GGG | + | chr1_3:2198376-2198395 | None:intergenic | 25.0% |
| !!! | TGTTTTAATTTGAAAGTCAC+AGG | - | chr1_3:2198653-2198672 | Msa0096490:intron | 25.0% |
| !!! | GTTTTAATTTGAAAGTCACA+GGG | - | chr1_3:2198654-2198673 | Msa0096490:intron | 25.0% |
| !!! | TTTTAATTTGAAAGTCACAG+GGG | - | chr1_3:2198655-2198674 | Msa0096490:intron | 25.0% |
| !!! | TTTTGTTTTTTGAGCGAATA+AGG | - | chr1_3:2199525-2199544 | Msa0096490:CDS | 25.0% |
| ! | GATTATTATTGAATGAAGAG+TGG | + | chr1_3:2199589-2199608 | None:intergenic | 25.0% |
| !! | TCATCTCTTATTTAAGTTCA+AGG | - | chr1_3:2199739-2199758 | Msa0096490:intron | 25.0% |
| !! | CACTCTTAATTTGAGTATTT+AGG | - | chr1_3:2199776-2199795 | Msa0096490:CDS | 25.0% |
| !!! | AGTATTTATTCTAGTTTCGT+TGG | + | chr1_3:2200354-2200373 | None:intergenic | 25.0% |
| ! | AGAATAAATACTATCATCTC+TGG | - | chr1_3:2200362-2200381 | Msa0096490:intron | 25.0% |
| ! | TATAATCTGAATGTAATGCT+CGG | + | chr1_3:2200390-2200409 | None:intergenic | 25.0% |
| !!! | ACATTATCTGATTTTAGCTA+AGG | + | chr1_3:2200595-2200614 | None:intergenic | 25.0% |
| ! | CTAAAATCAGATAATGTTCT+AGG | - | chr1_3:2200598-2200617 | Msa0096490:intron | 25.0% |
| ! | TAGTAAGACACAAATTTAAC+AGG | + | chr1_3:2200625-2200644 | None:intergenic | 25.0% |
| CATAAATTCTCCATTCTACT+GGG | + | chr1_3:2193792-2193811 | None:intergenic | 30.0% | |
| AGAATTTATGGAGTCAAATG+AGG | - | chr1_3:2193802-2193821 | Msa0096490:CDS | 30.0% | |
| TTTCTTTCCACACATCTTAT+TGG | - | chr1_3:2193840-2193859 | Msa0096490:CDS | 30.0% | |
| ATGGAGATTCTCTATAGTAT+TGG | + | chr1_3:2194089-2194108 | None:intergenic | 30.0% | |
| TGATTATGATGTTTGGATGA+TGG | + | chr1_3:2194108-2194127 | None:intergenic | 30.0% | |
| CCTTAAAATAAAATGGTGTG+AGG | + | chr1_3:2194149-2194168 | None:intergenic | 30.0% | |
| !!! | CCTCACACCATTTTATTTTA+AGG | - | chr1_3:2194146-2194165 | Msa0096490:intron | 30.0% |
| ! | TTTAAGGGTCTTGATTTTAC+AGG | - | chr1_3:2194162-2194181 | Msa0096490:intron | 30.0% |
| TGATATAGCTATCATTGATC+GGG | + | chr1_3:2194218-2194237 | None:intergenic | 30.0% | |
| ! | AAAGATTGGGTTTTCTGTAT+AGG | + | chr1_3:2194434-2194453 | None:intergenic | 30.0% |
| AATGAGAGAAATGAAGGTAA+GGG | + | chr1_3:2194484-2194503 | None:intergenic | 30.0% | |
| ACTAACAATGAGAGAAATGA+AGG | + | chr1_3:2194490-2194509 | None:intergenic | 30.0% | |
| TATTTCAATCACTCTCCAAT+GGG | + | chr1_3:2194545-2194564 | None:intergenic | 30.0% | |
| TTATTTCAATCACTCTCCAA+TGG | + | chr1_3:2194546-2194565 | None:intergenic | 30.0% | |
| GGATAATGCATAATATATGC+AGG | - | chr1_3:2194682-2194701 | Msa0096490:intron | 30.0% | |
| CATAATATATGCAGGGTTTA+TGG | - | chr1_3:2194690-2194709 | Msa0096490:intron | 30.0% | |
| !!! | TTTATTTTTTGGTGGTGTCT+GGG | + | chr1_3:2194723-2194742 | None:intergenic | 30.0% |
| !!! | TTTTATTTTTTGGTGGTGTC+TGG | + | chr1_3:2194724-2194743 | None:intergenic | 30.0% |
| AGACACCACCAAAAAATAAA+AGG | - | chr1_3:2194723-2194742 | Msa0096490:intron | 30.0% | |
| ATTTAGATCTAAAGATGACC+AGG | - | chr1_3:2195206-2195225 | Msa0096490:intron | 30.0% | |
| TTTAGATCTAAAGATGACCA+GGG | - | chr1_3:2195207-2195226 | Msa0096490:intron | 30.0% | |
| ! | TTTCTTTTCTTCTACAACTG+AGG | + | chr1_3:2195250-2195269 | None:intergenic | 30.0% |
| AGTTGTAGAAGAAAAGAAAC+CGG | - | chr1_3:2195251-2195270 | Msa0096490:intron | 30.0% | |
| !! | ATCTCTGAAGTCTTCATAAT+TGG | + | chr1_3:2195387-2195406 | None:intergenic | 30.0% |
| ! | TGAAAATGTTGATAGATTCC+TGG | - | chr1_3:2195639-2195658 | Msa0096490:intron | 30.0% |
| ! | GAAAATGTTGATAGATTCCT+GGG | - | chr1_3:2195640-2195659 | Msa0096490:intron | 30.0% |
| ATAAAAGAAACTAGAAAGGC+CGG | - | chr1_3:2195825-2195844 | Msa0096490:intron | 30.0% | |
| TTCTAAATTGCAGAGTGAAA+TGG | - | chr1_3:2195893-2195912 | Msa0096490:intron | 30.0% | |
| TATGTAAATCTAGTTGCAGA+CGG | - | chr1_3:2195963-2195982 | Msa0096490:intron | 30.0% | |
| !!! | CTTGTAGCTCTTCATTTTTT+CGG | + | chr1_3:2196013-2196032 | None:intergenic | 30.0% |
| !! | AAGTTTAGCTTTCCTTGTTT+AGG | - | chr1_3:2196273-2196292 | Msa0096490:intron | 30.0% |
| !! | AGTTTAGCTTTCCTTGTTTA+GGG | - | chr1_3:2196274-2196293 | Msa0096490:intron | 30.0% |
| CAAAACTAAATCCCTAAACA+AGG | + | chr1_3:2196288-2196307 | None:intergenic | 30.0% | |
| !! | CTTGTTTAGGGATTTAGTTT+TGG | - | chr1_3:2196286-2196305 | Msa0096490:intron | 30.0% |
| !! | TCAACTTCATTTTTCGGAAA+TGG | - | chr1_3:2196325-2196344 | Msa0096490:intron | 30.0% |
| ATTTACCACTCTCAAAACTA+GGG | + | chr1_3:2196428-2196447 | None:intergenic | 30.0% | |
| AATTTACCACTCTCAAAACT+AGG | + | chr1_3:2196429-2196448 | None:intergenic | 30.0% | |
| !!! | AGTTTTGAGAGTGGTAAATT+CGG | - | chr1_3:2196429-2196448 | Msa0096490:intron | 30.0% |
| GTGGACGTTTAATGTTAAAT+TGG | + | chr1_3:2196460-2196479 | None:intergenic | 30.0% | |
| !! | AATGTGTTGTTTGAACAATC+TGG | + | chr1_3:2196714-2196733 | None:intergenic | 30.0% |
| GTGCTTATACAACATAGATT+TGG | - | chr1_3:2197062-2197081 | Msa0096490:intron | 30.0% | |
| !! | AACATAGATTTGGGATGTTT+TGG | - | chr1_3:2197072-2197091 | Msa0096490:intron | 30.0% |
| ! | ATAGTATTGAGAGCAAAGAT+TGG | - | chr1_3:2197176-2197195 | Msa0096490:intron | 30.0% |
| ! | TAGTATTGAGAGCAAAGATT+GGG | - | chr1_3:2197177-2197196 | Msa0096490:intron | 30.0% |
| !! | TTATGAGTTTTGTCCAAAAG+AGG | - | chr1_3:2197290-2197309 | Msa0096490:intron | 30.0% |
| ! | GTAAATTGTTTGACCTCTTT+TGG | + | chr1_3:2197306-2197325 | None:intergenic | 30.0% |
| CTTAGATTCTGATCAAACAT+GGG | + | chr1_3:2197766-2197785 | None:intergenic | 30.0% | |
| TCTTAGATTCTGATCAAACA+TGG | + | chr1_3:2197767-2197786 | None:intergenic | 30.0% | |
| ! | ACCATGTTCAAACATGTTTT+AGG | - | chr1_3:2198024-2198043 | Msa0096490:intron | 30.0% |
| GTACAAATAGGCATAAAACA+AGG | + | chr1_3:2198105-2198124 | None:intergenic | 30.0% | |
| TATCTATACAGAATCAGTTG+TGG | - | chr1_3:2198185-2198204 | Msa0096490:intron | 30.0% | |
| GAAAATATTGTTACTCCTTG+AGG | + | chr1_3:2198218-2198237 | None:intergenic | 30.0% | |
| ! | CAAGGAGTAACAATATTTTC+GGG | - | chr1_3:2198218-2198237 | Msa0096490:intron | 30.0% |
| TATGGAAAGTCCTAAAATGT+AGG | + | chr1_3:2198280-2198299 | None:intergenic | 30.0% | |
| CCATATATACTGAAGCAATA+TGG | + | chr1_3:2198377-2198396 | None:intergenic | 30.0% | |
| CCATATTGCTTCAGTATATA+TGG | - | chr1_3:2198374-2198393 | Msa0096490:intron | 30.0% | |
| !! | TATCGTTTTGATGCAAGTAT+AGG | - | chr1_3:2198492-2198511 | Msa0096490:intron | 30.0% |
| GTATCAAGATGATACAAGAA+AGG | + | chr1_3:2198537-2198556 | None:intergenic | 30.0% | |
| ! | TTATGTTTGTTAGCATGATG+TGG | - | chr1_3:2198922-2198941 | Msa0096490:intron | 30.0% |
| ! | TATGTTTGTTAGCATGATGT+GGG | - | chr1_3:2198923-2198942 | Msa0096490:intron | 30.0% |
| !!! | GGAACCAAGGTTTTAAAAAA+CGG | - | chr1_3:2198944-2198963 | Msa0096490:intron | 30.0% |
| !!! | GAACCAAGGTTTTAAAAAAC+GGG | - | chr1_3:2198945-2198964 | Msa0096490:intron | 30.0% |
| TTTCTTTCTCAGCGTTAAAA+GGG | + | chr1_3:2199031-2199050 | None:intergenic | 30.0% | |
| ATTTCTTTCTCAGCGTTAAA+AGG | + | chr1_3:2199032-2199051 | None:intergenic | 30.0% | |
| AACCACAAAAATACAAGAAC+AGG | - | chr1_3:2199176-2199195 | Msa0096490:CDS | 30.0% | |
| ACCACAAAAATACAAGAACA+GGG | - | chr1_3:2199177-2199196 | Msa0096490:CDS | 30.0% | |
| AATCAATTACTTCCCTTCTT+TGG | - | chr1_3:2199275-2199294 | Msa0096490:intron | 30.0% | |
| TAGAACATCTTGATATTGTG+TGG | - | chr1_3:2200227-2200246 | Msa0096490:intron | 30.0% | |
| !! | GAAAGAGTTGATAGATTCAT+GGG | - | chr1_3:2200444-2200463 | Msa0096490:CDS | 30.0% |
| CATTTAATCCTTCTTTAAGC+AGG | - | chr1_3:2200556-2200575 | Msa0096490:intron | 30.0% | |
| AAAAAAAAAACTAGAGAGGC+CGG | - | chr1_3:2200678-2200697 | Msa0096490:intron | 30.0% | |
| TGAAGAAAGGTTGAAATCTT+TGG | - | chr1_3:2200779-2200798 | Msa0096490:intron | 30.0% | |
| TATGTAAAACTAGTTGCAGA+CGG | - | chr1_3:2200825-2200844 | Msa0096490:intron | 30.0% | |
| AGGAAAGCCAAAAGAAAATT+CGG | - | chr1_3:2200865-2200884 | Msa0096490:intron | 30.0% | |
| CCATAAATTCTCCATTCTAC+TGG | + | chr1_3:2193793-2193812 | None:intergenic | 35.0% | |
| CCAGTAGAATGGAGAATTTA+TGG | - | chr1_3:2193790-2193809 | Msa0096490:CDS | 35.0% | |
| ! | TCAAATGAGGTTAGTTGTTC+TGG | - | chr1_3:2193815-2193834 | Msa0096490:CDS | 35.0% |
| TTTCCACACATCTTATTGGA+TGG | - | chr1_3:2193844-2193863 | Msa0096490:CDS | 35.0% | |
| TTACCATCCAATAAGATGTG+TGG | + | chr1_3:2193850-2193869 | None:intergenic | 35.0% | |
| !!! | AAAAGCTAGTTTTTCAAGGC+TGG | - | chr1_3:2193952-2193971 | Msa0096490:CDS | 35.0% |
| ! | AGATTTTCAATGGAGAGAGT+CGG | + | chr1_3:2194040-2194059 | None:intergenic | 35.0% |
| ATATAGCTATCATTGATCGG+GGG | + | chr1_3:2194216-2194235 | None:intergenic | 35.0% | |
| GATATAGCTATCATTGATCG+GGG | + | chr1_3:2194217-2194236 | None:intergenic | 35.0% | |
| TTTGTTAGGGTACAACTTAC+CGG | - | chr1_3:2194359-2194378 | Msa0096490:CDS | 35.0% | |
| CAGAAAACCCAATCTTTCAA+AGG | - | chr1_3:2194437-2194456 | Msa0096490:intron | 35.0% | |
| ATGAGAGAAATGAAGGTAAG+GGG | + | chr1_3:2194483-2194502 | None:intergenic | 35.0% | |
| CAATGAGAGAAATGAAGGTA+AGG | + | chr1_3:2194485-2194504 | None:intergenic | 35.0% | |
| CATCTTATTATGTACCCCAT+TGG | - | chr1_3:2194527-2194546 | Msa0096490:intron | 35.0% | |
| ATTTCAATCACTCTCCAATG+GGG | + | chr1_3:2194544-2194563 | None:intergenic | 35.0% | |
| !!! | TTATTTTTTGGTGGTGTCTG+GGG | + | chr1_3:2194722-2194741 | None:intergenic | 35.0% |
| TTCTTCTTCTCTGTTGAACA+TGG | + | chr1_3:2194839-2194858 | None:intergenic | 35.0% | |
| ATGTTCAACAGAGAAGAAGA+AGG | - | chr1_3:2194838-2194857 | Msa0096490:intron | 35.0% | |
| TGTTCAACAGAGAAGAAGAA+GGG | - | chr1_3:2194839-2194858 | Msa0096490:intron | 35.0% | |
| ! | AAACAGCTTTCAGGTAAAAC+AGG | - | chr1_3:2194878-2194897 | Msa0096490:intron | 35.0% |
| TTTCTATGTGGTCGTAATCA+TGG | + | chr1_3:2194904-2194923 | None:intergenic | 35.0% | |
| TGATTACGACCACATAGAAA+TGG | - | chr1_3:2194904-2194923 | Msa0096490:intron | 35.0% | |
| ACTTTGTCTGCATCATGTTT+AGG | - | chr1_3:2195180-2195199 | Msa0096490:intron | 35.0% | |
| AGAAGAAAAGAAACCGGAAA+AGG | - | chr1_3:2195257-2195276 | Msa0096490:intron | 35.0% | |
| !! | GTTGCAGTCTTTTTCATTGT+TGG | + | chr1_3:2195297-2195316 | None:intergenic | 35.0% |
| AAAAAGACTGCAACTTTCAC+TGG | - | chr1_3:2195303-2195322 | Msa0096490:intron | 35.0% | |
| ! | TCTGAAGTCTTCATAATTGG+TGG | + | chr1_3:2195384-2195403 | None:intergenic | 35.0% |
| ACTACAACAGGATCAAACAA+TGG | - | chr1_3:2195426-2195445 | Msa0096490:intron | 35.0% | |
| CTACAACAGGATCAAACAAT+GGG | - | chr1_3:2195427-2195446 | Msa0096490:intron | 35.0% | |
| TACAACAGGATCAAACAATG+GGG | - | chr1_3:2195428-2195447 | Msa0096490:intron | 35.0% | |
| AACTCGACAAGATCAAACAA+AGG | - | chr1_3:2195481-2195500 | Msa0096490:intron | 35.0% | |
| !! | CAAGATCAAACAAAGGTACT+TGG | - | chr1_3:2195488-2195507 | Msa0096490:intron | 35.0% |
| CTGAATGTAATGCTTGATTC+AGG | + | chr1_3:2195580-2195599 | None:intergenic | 35.0% | |
| TCCTTATTAGCTGTCTAGTA+TGG | - | chr1_3:2195785-2195804 | Msa0096490:intron | 35.0% | |
| TCCATACTAGACAGCTAATA+AGG | + | chr1_3:2195789-2195808 | None:intergenic | 35.0% | |
| TAAAAGAAACTAGAAAGGCC+GGG | - | chr1_3:2195826-2195845 | Msa0096490:intron | 35.0% | |
| AATTGCAGAGTGAAATGGAA+CGG | - | chr1_3:2195898-2195917 | Msa0096490:intron | 35.0% | |
| AATGAAGAGCTACAAGCAAA+AGG | - | chr1_3:2196017-2196036 | Msa0096490:intron | 35.0% | |
| ATGAAGAGCTACAAGCAAAA+GGG | - | chr1_3:2196018-2196037 | Msa0096490:intron | 35.0% | |
| TCACTAATTGCCAAACATCA+AGG | - | chr1_3:2196100-2196119 | Msa0096490:intron | 35.0% | |
| !! | CGACTGTCAACTTCATTTTT+CGG | - | chr1_3:2196319-2196338 | Msa0096490:intron | 35.0% |
| ! | GATCAATTTTGTGTCAGATC+AGG | - | chr1_3:2196381-2196400 | Msa0096490:intron | 35.0% |
| CTCTCAAAACTAGGGTTAAT+AGG | + | chr1_3:2196420-2196439 | None:intergenic | 35.0% | |
| !!! | ATTAACCCTAGTTTTGAGAG+TGG | - | chr1_3:2196420-2196439 | Msa0096490:intron | 35.0% |
| !!! | GTTTTGAGAGTGGTAAATTC+GGG | - | chr1_3:2196430-2196449 | Msa0096490:intron | 35.0% |
| TTTAGGTCAAATACCGTTTG+CGG | + | chr1_3:2196607-2196626 | None:intergenic | 35.0% | |
| CAAGAGTTAGTGAGTATATC+TGG | - | chr1_3:2196677-2196696 | Msa0096490:intron | 35.0% | |
| GATATTTATCCACATAGCGA+TGG | + | chr1_3:2196893-2196912 | None:intergenic | 35.0% | |
| GAAAAAACTGCCACATAACT+TGG | + | chr1_3:2196923-2196942 | None:intergenic | 35.0% | |
| TAGACTTATAGTGCAAGCAA+AGG | - | chr1_3:2196984-2197003 | Msa0096490:intron | 35.0% | |
| AAGCAAAGGTAGTAGTTTGA+AGG | - | chr1_3:2196998-2197017 | Msa0096490:intron | 35.0% | |
| ! | GGAGATTTTACCAAAAGAGT+TGG | - | chr1_3:2197031-2197050 | Msa0096490:intron | 35.0% |
| ! | ACTACAAAGACCAACTCTTT+TGG | + | chr1_3:2197044-2197063 | None:intergenic | 35.0% |
| !! | TAGATTTGGGATGTTTTGGA+AGG | - | chr1_3:2197076-2197095 | Msa0096490:intron | 35.0% |
| CAACACAATTGTTCTCTTCA+CGG | + | chr1_3:2197225-2197244 | None:intergenic | 35.0% | |
| ! | GAACAATTGTGTTGATGCAA+TGG | - | chr1_3:2197231-2197250 | Msa0096490:intron | 35.0% |
| AGGTCAAACAATTTACTCCA+CGG | - | chr1_3:2197310-2197329 | Msa0096490:intron | 35.0% | |
| CACTATGCAAGATATATGAC+TGG | + | chr1_3:2197640-2197659 | None:intergenic | 35.0% | |
| TCTTGTTGCCACTATTAACA+AGG | + | chr1_3:2197675-2197694 | None:intergenic | 35.0% | |
| TTAGGGAGCAACAAAATGAA+TGG | - | chr1_3:2197933-2197952 | Msa0096490:intron | 35.0% | |
| TAGGGAGCAACAAAATGAAT+GGG | - | chr1_3:2197934-2197953 | Msa0096490:intron | 35.0% | |
| !! | AAAATGAATGGGAGAGTGTT+CGG | - | chr1_3:2197945-2197964 | Msa0096490:intron | 35.0% |
| ! | AGAGTGTTCGGTATTTGTAT+TGG | - | chr1_3:2197957-2197976 | Msa0096490:intron | 35.0% |
| GCCTAAAACATGTTTGAACA+TGG | + | chr1_3:2198028-2198047 | None:intergenic | 35.0% | |
| !!! | ACGCGCGTTTTTTCTTATTA+AGG | - | chr1_3:2198123-2198142 | Msa0096490:intron | 35.0% |
| !!! | AGTTGTGGTTTTATTCCTCA+AGG | - | chr1_3:2198200-2198219 | Msa0096490:intron | 35.0% |
| GACGGCTTGAATGAATAATT+AGG | + | chr1_3:2198412-2198431 | None:intergenic | 35.0% | |
| !! | TACACCAAAACTTTGAAGCA+AGG | - | chr1_3:2198594-2198613 | Msa0096490:intron | 35.0% |
| ! | ACAACCTTGCTTCAAAGTTT+TGG | + | chr1_3:2198601-2198620 | None:intergenic | 35.0% |
| ! | AGGTTGTAGTTTGTGTTTGA+AGG | - | chr1_3:2198614-2198633 | Msa0096490:intron | 35.0% |
| !! | ATGAGTTTGTTGACACAGTT+CGG | + | chr1_3:2198862-2198881 | None:intergenic | 35.0% |
| TTCTTTCTCAGCGTTAAAAG+GGG | + | chr1_3:2199030-2199049 | None:intergenic | 35.0% | |
| CCACAAAAATACAAGAACAG+GGG | - | chr1_3:2199178-2199197 | Msa0096490:CDS | 35.0% | |
| ! | TACAAAAGATTTGAGATGCC+TGG | + | chr1_3:2199230-2199249 | None:intergenic | 35.0% |
| ! | ACATTCGTTTTCTGTGTACT+TGG | - | chr1_3:2200189-2200208 | Msa0096490:intron | 35.0% |
| !! | CAAGATCAAACAAAGGTACT+TGG | - | chr1_3:2195488-2195507 | Msa0096490:intron | 35.0% |
| !! | AAACAAAGGTACTTGGAAGA+AGG | - | chr1_3:2195495-2195514 | Msa0096490:intron | 35.0% |
| !! | GGAAAGAGTTGATAGATTCA+TGG | - | chr1_3:2200443-2200462 | Msa0096490:CDS | 35.0% |
| ATTCATGGGAAGACAAGAAA+AGG | - | chr1_3:2200458-2200477 | Msa0096490:intron | 35.0% | |
| ! | TCTCTCAGACACTCTTTTTA+AGG | - | chr1_3:2200517-2200536 | Msa0096490:intron | 35.0% |
| TTTCATGACCTGCTTAAAGA+AGG | + | chr1_3:2200567-2200586 | None:intergenic | 35.0% | |
| AAAAAAAAACTAGAGAGGCC+GGG | - | chr1_3:2200679-2200698 | Msa0096490:intron | 35.0% | |
| ! | GTTCACTCCGAATTTTCTTT+TGG | + | chr1_3:2200875-2200894 | None:intergenic | 35.0% |
| ! | TTCAATTCTTCGGCTTTTCT+CGG | + | chr1_3:2200985-2201004 | None:intergenic | 35.0% |
| CTTGTAGCTCTTCAATTCTT+CGG | + | chr1_3:2200995-2201014 | None:intergenic | 35.0% | |
| AATTCTCCATTCTACTGGGA+GGG | + | chr1_3:2193788-2193807 | None:intergenic | 40.0% | |
| AAATTCTCCATTCTACTGGG+AGG | + | chr1_3:2193789-2193808 | None:intergenic | 40.0% | |
| TCTTGTTGCCACCATTAACA+TGG | + | chr1_3:2193928-2193947 | None:intergenic | 40.0% | |
| ! | GGGTATCGTTGATCAAACAT+GGG | + | chr1_3:2194019-2194038 | None:intergenic | 40.0% |
| ! | GATTTTCAATGGAGAGAGTC+GGG | + | chr1_3:2194039-2194058 | None:intergenic | 40.0% |
| ! | AGGTATTTTCCGATCTCTTG+TGG | + | chr1_3:2194414-2194433 | None:intergenic | 40.0% |
| TACCAACTGAGCTAAGTTCA+CGG | + | chr1_3:2194661-2194680 | None:intergenic | 40.0% | |
| ! | TGAACTTAGCTCAGTTGGTA+AGG | - | chr1_3:2194661-2194680 | Msa0096490:intron | 40.0% |
| !!! | GCTGTTTTTGCAACCAATTC+TGG | + | chr1_3:2194865-2194884 | None:intergenic | 40.0% |
| TGGTTGCAAAAACAGCTTTC+AGG | - | chr1_3:2194869-2194888 | Msa0096490:intron | 40.0% | |
| TAGTGCATCCAAGCGATTAT+CGG | - | chr1_3:2195069-2195088 | Msa0096490:intron | 40.0% | |
| ATCTTTACCCGATAATCGCT+TGG | + | chr1_3:2195080-2195099 | None:intergenic | 40.0% | |
| !! | GTCTTTTTCATTGTTGGCGT+AGG | + | chr1_3:2195291-2195310 | None:intergenic | 40.0% |
| GAAGTCTTCATAATTGGTGG+TGG | + | chr1_3:2195381-2195400 | None:intergenic | 40.0% | |
| GTAATGCTTGATTCAGGAGA+TGG | + | chr1_3:2195574-2195593 | None:intergenic | 40.0% | |
| ATTCCTGGGAAGACAAGAAA+AGG | - | chr1_3:2195654-2195673 | Msa0096490:intron | 40.0% | |
| !! | TTGCTTCATTAGCTTGCGTT+TGG | + | chr1_3:2195687-2195706 | None:intergenic | 40.0% |
| ACGGAGAAGGTTAAAAGCTT+TGG | - | chr1_3:2195917-2195936 | Msa0096490:intron | 40.0% | |
| CTCTCAAACTCCTTGATGTT+TGG | + | chr1_3:2196113-2196132 | None:intergenic | 40.0% | |
| CAAACATCAAGGAGTTTGAG+AGG | - | chr1_3:2196111-2196130 | Msa0096490:intron | 40.0% | |
| ATCATTCCGACCAAGTTATG+TGG | - | chr1_3:2196910-2196929 | Msa0096490:intron | 40.0% | |
| AAACTGCCACATAACTTGGT+CGG | + | chr1_3:2196919-2196938 | None:intergenic | 40.0% | |
| TAGTTTGAAGGAGAGTGGTT+TGG | - | chr1_3:2197010-2197029 | Msa0096490:intron | 40.0% | |
| !!! | TGTTTTGGAAGGTTTGAAGC+TGG | - | chr1_3:2197087-2197106 | Msa0096490:intron | 40.0% |
| ! | TTATAGCGTTGAGTTGTGTG+TGG | - | chr1_3:2197126-2197145 | Msa0096490:intron | 40.0% |
| TGTTGATGCAATGGCGAAAA+TGG | - | chr1_3:2197240-2197259 | Msa0096490:intron | 40.0% | |
| GCAATGGCGAAAATGGTAAT+TGG | - | chr1_3:2197247-2197266 | Msa0096490:intron | 40.0% | |
| CATTACAACAGAACTAACCG+TGG | + | chr1_3:2197330-2197349 | None:intergenic | 40.0% | |
| TAAATCCTCCTCCATTCTTC+CGG | + | chr1_3:2197537-2197556 | None:intergenic | 40.0% | |
| GAAGAATGGAGGAGGATTTA+TGG | - | chr1_3:2197537-2197556 | Msa0096490:intron | 40.0% | |
| AGGATTTATGGAGGCAAATG+AGG | - | chr1_3:2197549-2197568 | Msa0096490:intron | 40.0% | |
| ! | TAGGCATTTTCACGAGATGT+TGG | - | chr1_3:2198043-2198062 | Msa0096490:intron | 40.0% |
| GATGTTTCAACATCCTGACA+CGG | - | chr1_3:2198070-2198089 | Msa0096490:intron | 40.0% | |
| GAAAAAACGCGCGTACAAAT+AGG | + | chr1_3:2198117-2198136 | None:intergenic | 40.0% | |
| TGCTTGGTCAACAAGATATG+TGG | + | chr1_3:2198158-2198177 | None:intergenic | 40.0% | |
| ! | GTATAGATATGCGTGTTGCT+TGG | + | chr1_3:2198174-2198193 | None:intergenic | 40.0% |
| ATGGGCTCAATAACCTTGTT+GGG | + | chr1_3:2198358-2198377 | None:intergenic | 40.0% | |
| TATGGGCTCAATAACCTTGT+TGG | + | chr1_3:2198359-2198378 | None:intergenic | 40.0% | |
| CAGGGGTTGTGATTGATTAT+AGG | - | chr1_3:2198672-2198691 | Msa0096490:intron | 40.0% | |
| TGAGATGAGATCTCAGATCT+AGG | - | chr1_3:2198699-2198718 | Msa0096490:intron | 40.0% | |
| TCTCAGATCTAGGAATTCCT+AGG | - | chr1_3:2198709-2198728 | Msa0096490:intron | 40.0% | |
| ACACGTCTAGATTTCAACCT+AGG | + | chr1_3:2198729-2198748 | None:intergenic | 40.0% | |
| TAGTGATTTCCTTCCTTGCT+TGG | - | chr1_3:2198809-2198828 | Msa0096490:CDS | 40.0% | |
| !!! | CGTCCCGTTTTTTAAAACCT+TGG | + | chr1_3:2198951-2198970 | None:intergenic | 40.0% |
| !!! | ATTTGTAACGGCCGTTTTTG+CGG | + | chr1_3:2198977-2198996 | None:intergenic | 40.0% |
| CAAAAACGGCCGTTACAAAT+CGG | - | chr1_3:2198977-2198996 | Msa0096490:intron | 40.0% | |
| AAAAGGGGCAAAAACGGTAA+CGG | + | chr1_3:2199015-2199034 | None:intergenic | 40.0% | |
| AGCGTTAAAAGGGGCAAAAA+CGG | + | chr1_3:2199021-2199040 | None:intergenic | 40.0% | |
| TCACAGAAAAAACGCCGTTA+CGG | - | chr1_3:2199052-2199071 | Msa0096490:intron | 40.0% | |
| AACAGAAGAACAGGAGAAGA+AGG | - | chr1_3:2199122-2199141 | Msa0096490:intron | 40.0% | |
| !! | CCCCTGTTCTTGTATTTTTG+TGG | + | chr1_3:2199181-2199200 | None:intergenic | 40.0% |
| AAATACAAGAACAGGGGAAG+AGG | - | chr1_3:2199184-2199203 | Msa0096490:CDS | 40.0% | |
| ! | TCTTATCTTTTGTACCAGCC+AGG | - | chr1_3:2199209-2199228 | Msa0096490:intron | 40.0% |
| CAATTACTTCCCTTCTTTGG+TGG | - | chr1_3:2199278-2199297 | Msa0096490:intron | 40.0% | |
| AGAATCACACCACCAAAGAA+GGG | + | chr1_3:2199290-2199309 | None:intergenic | 40.0% | |
| AAGAATCACACCACCAAAGA+AGG | + | chr1_3:2199291-2199310 | None:intergenic | 40.0% | |
| GATACAAATAACGGTCTTCG+CGG | + | chr1_3:2200079-2200098 | None:intergenic | 40.0% | |
| !! | AAGGTTCTAAAAAACGGTCG+CGG | + | chr1_3:2200150-2200169 | None:intergenic | 40.0% |
| !!! | ACCGTTTTTTAGAACCTTGG+TGG | - | chr1_3:2200152-2200171 | Msa0096490:intron | 40.0% |
| !! | CCCACCAAGGTTCTAAAAAA+CGG | + | chr1_3:2200156-2200175 | None:intergenic | 40.0% |
| !!! | CCGTTTTTTAGAACCTTGGT+GGG | - | chr1_3:2200153-2200172 | Msa0096490:intron | 40.0% |
| !!! | GTTTTCTGTGTACTTGGTGT+TGG | - | chr1_3:2200195-2200214 | Msa0096490:intron | 40.0% |
| GCGTGACATGATCAAACAAT+GGG | - | chr1_3:2200256-2200275 | Msa0096490:intron | 40.0% | |
| AGCTCGACAAGATCAAACAA+AGG | - | chr1_3:2200300-2200319 | Msa0096490:intron | 40.0% | |
| ACATTGTCAGGTATGAGAAG+TGG | - | chr1_3:2195618-2195637 | Msa0096490:intron | 40.0% | |
| !!! | CTCCCACAACATTTTTTACC+CGG | + | chr1_3:2200700-2200719 | None:intergenic | 40.0% |
| TGCAGAGTGAACTTGAAGAA+AGG | - | chr1_3:2200766-2200785 | Msa0096490:intron | 40.0% | |
| ACAGCGAAGGTTGAAATCTA+AGG | - | chr1_3:2200899-2200918 | Msa0096490:intron | 40.0% | |
| GCAAGTACAATTCCAACAAC+AGG | - | chr1_3:2201026-2201045 | Msa0096490:exon | 40.0% | |
| CAGAAGCAGAAATACTTCTG+TGG | + | chr1_3:2201059-2201078 | None:intergenic | 40.0% | |
| ACAAAACCCTCCCAGTAGAA+TGG | - | chr1_3:2193779-2193798 | Msa0096490:CDS | 45.0% | |
| CAACAAGCTAGGTATGTGTC+TGG | + | chr1_3:2193893-2193912 | None:intergenic | 45.0% | |
| ! | CGGGTATCGTTGATCAAACA+TGG | + | chr1_3:2194020-2194039 | None:intergenic | 45.0% |
| AGGACCATATTGTCCCTGAA+GGG | - | chr1_3:2194182-2194201 | Msa0096490:intron | 45.0% | |
| CTATCATTGATCGGGGGAAA+GGG | + | chr1_3:2194210-2194229 | None:intergenic | 45.0% | |
| TAGGGTACAACTTACCGGTA+CGG | - | chr1_3:2194364-2194383 | Msa0096490:CDS | 45.0% | |
| GAGGAGAACAAAGCTGATCT+TGG | - | chr1_3:2194386-2194405 | Msa0096490:CDS | 45.0% | |
| !! | ATCTTGGTGCCACAAGAGAT+CGG | - | chr1_3:2194402-2194421 | Msa0096490:intron | 45.0% |
| AGAAGAAGAAGGGCCAGAAT+TGG | - | chr1_3:2194849-2194868 | Msa0096490:intron | 45.0% | |
| CAGCATGCACCATTTCTATG+TGG | + | chr1_3:2194916-2194935 | None:intergenic | 45.0% | |
| AAGCTCAAAAGCAAGGTGGA+CGG | - | chr1_3:2195019-2195038 | Msa0096490:intron | 45.0% | |
| CTTGGATGCACTACTGAGAA+GGG | + | chr1_3:2195062-2195081 | None:intergenic | 45.0% | |
| AGTGCATCCAAGCGATTATC+GGG | - | chr1_3:2195070-2195089 | Msa0096490:intron | 45.0% | |
| TAAAGATGACCAGGGTGACA+AGG | - | chr1_3:2195215-2195234 | Msa0096490:intron | 45.0% | |
| ! | GTAGGAGTAATGGCCTTTTC+CGG | + | chr1_3:2195273-2195292 | None:intergenic | 45.0% |
| CATTGTTGGCGTAGGAGTAA+TGG | + | chr1_3:2195283-2195302 | None:intergenic | 45.0% | |
| !! | GTCTTCATAATTGGTGGTGG+CGG | + | chr1_3:2195378-2195397 | None:intergenic | 45.0% |
| GTAGTCTGTCTTAGAGGATC+AGG | + | chr1_3:2195411-2195430 | None:intergenic | 45.0% | |
| CCTGTTGTAGTCTGTCTTAG+AGG | + | chr1_3:2195417-2195436 | None:intergenic | 45.0% | |
| !! | CCTCTAAGACAGACTACAAC+AGG | - | chr1_3:2195414-2195433 | Msa0096490:intron | 45.0% |
| GGAGACAGATGCAGATGAAT+GGG | - | chr1_3:2195449-2195468 | Msa0096490:intron | 45.0% | |
| ! | CATCCTTTTCTTGTCTTCCC+AGG | + | chr1_3:2195660-2195679 | None:intergenic | 45.0% |
| ACGCAAGCTAATGAAGCAAG+AGG | - | chr1_3:2195688-2195707 | Msa0096490:intron | 45.0% | |
| AGGCCGGGTAAAAAATGTTG+TGG | - | chr1_3:2195841-2195860 | Msa0096490:intron | 45.0% | |
| GGCCGGGTAAAAAATGTTGT+GGG | - | chr1_3:2195842-2195861 | Msa0096490:intron | 45.0% | |
| !!! | CGCCCACAACATTTTTTACC+CGG | + | chr1_3:2195847-2195866 | None:intergenic | 45.0% |
| AGAGTGAAATGGAACGGAGA+AGG | - | chr1_3:2195904-2195923 | Msa0096490:intron | 45.0% | |
| AGAGCTACAAGCAAAAGGGA+AGG | - | chr1_3:2196022-2196041 | Msa0096490:intron | 45.0% | |
| CAGAAGCAGAAATACATCCG+TGG | + | chr1_3:2196077-2196096 | None:intergenic | 45.0% | |
| ! | CGGATGTATTTCTGCTTCTG+AGG | - | chr1_3:2196077-2196096 | Msa0096490:intron | 45.0% |
| CTGTCTTAAAGGACCGCAAA+CGG | - | chr1_3:2196591-2196610 | Msa0096490:intron | 45.0% | |
| ATCCACATAGCGATGGCTAA+TGG | + | chr1_3:2196886-2196905 | None:intergenic | 45.0% | |
| !!! | GTGGCAGTTTTTTCCTTCTC+TGG | - | chr1_3:2196929-2196948 | Msa0096490:intron | 45.0% |
| GGTAGTAGTTTGAAGGAGAG+TGG | - | chr1_3:2197005-2197024 | Msa0096490:intron | 45.0% | |
| ACCAGAGAATAAAACCCACC+CGG | - | chr1_3:2197515-2197534 | Msa0096490:intron | 45.0% | |
| ATAAAACCCACCCGGAAGAA+TGG | - | chr1_3:2197523-2197542 | Msa0096490:intron | 45.0% | |
| AAATCCTCCTCCATTCTTCC+GGG | + | chr1_3:2197536-2197555 | None:intergenic | 45.0% | |
| GAATGGAGGAGGATTTATGG+AGG | - | chr1_3:2197540-2197559 | Msa0096490:intron | 45.0% | |
| ! | GGCAAATGAGGTTAGTTGCT+CGG | - | chr1_3:2197561-2197580 | Msa0096490:intron | 45.0% |
| GTCAACAAGATATGTGGACG+TGG | + | chr1_3:2198152-2198171 | None:intergenic | 45.0% | |
| !! | CATTGTTCTGAAGCCCAACA+AGG | - | chr1_3:2198342-2198361 | Msa0096490:intron | 45.0% |
| TGACATACACACCTACTCTG+GGG | + | chr1_3:2198839-2198858 | None:intergenic | 45.0% | |
| GTGACATACACACCTACTCT+GGG | + | chr1_3:2198840-2198859 | None:intergenic | 45.0% | |
| TTAGCATGATGTGGGAACCA+AGG | - | chr1_3:2198931-2198950 | Msa0096490:intron | 45.0% | |
| !! | CTGCCGATACCGATTTGTAA+CGG | + | chr1_3:2198989-2199008 | None:intergenic | 45.0% |
| !! | TTACAAATCGGTATCGGCAG+TGG | - | chr1_3:2198989-2199008 | Msa0096490:intron | 45.0% |
| TCTCCTGTTCTTCTGTTTCG+CGG | + | chr1_3:2199119-2199138 | None:intergenic | 45.0% | |
| AAGAACAGGAGAAGAAGGAC+AGG | - | chr1_3:2199127-2199146 | Msa0096490:intron | 45.0% | |
| ! | AAAGATTTGAGATGCCTGGC+TGG | + | chr1_3:2199226-2199245 | None:intergenic | 45.0% |
| CACTTATCACAAACCTGCCT+GGG | + | chr1_3:2199496-2199515 | None:intergenic | 45.0% | |
| TCACTTATCACAAACCTGCC+TGG | + | chr1_3:2199497-2199516 | None:intergenic | 45.0% | |
| GGACGCTGCGATACAAATAA+CGG | + | chr1_3:2200088-2200107 | None:intergenic | 45.0% | |
| CGTTAAGGTTGTCGCGATTT+CGG | + | chr1_3:2200118-2200137 | None:intergenic | 45.0% | |
| !!! | GCGACCGTTTTTTAGAACCT+TGG | - | chr1_3:2200149-2200168 | Msa0096490:intron | 45.0% |
| TGCGTTTAATGTTCCCACCA+AGG | + | chr1_3:2200169-2200188 | None:intergenic | 45.0% | |
| CGCGTGACATGATCAAACAA+TGG | - | chr1_3:2200255-2200274 | Msa0096490:intron | 45.0% | |
| TCAAACAATGGGCACGAGAA+TGG | - | chr1_3:2200267-2200286 | Msa0096490:intron | 45.0% | |
| CAAACAATGGGCACGAGAAT+GGG | - | chr1_3:2200268-2200287 | Msa0096490:intron | 45.0% | |
| ! | TTCCTTCACTAGCTTGCGTT+TGG | + | chr1_3:2200491-2200510 | None:intergenic | 45.0% |
| AGGCCGGGTAAAAAATGTTG+TGG | - | chr1_3:2195841-2195860 | Msa0096490:intron | 45.0% | |
| GGCCGGGTAAAAAATGTTGT+GGG | - | chr1_3:2195842-2195861 | Msa0096490:intron | 45.0% | |
| AGAGCTACAAGCAAGAGAGA+AGG | - | chr1_3:2201004-2201023 | Msa0096490:intron | 45.0% | |
| !!! | ACTGGGAGGGTTTTGTTCTC+AGG | + | chr1_3:2193775-2193794 | None:intergenic | 50.0% |
| CAGGACCATATTGTCCCTGA+AGG | - | chr1_3:2194181-2194200 | Msa0096490:intron | 50.0% | |
| GGTTCCCTTCAGGGACAATA+TGG | + | chr1_3:2194189-2194208 | None:intergenic | 50.0% | |
| GCTATCATTGATCGGGGGAA+AGG | + | chr1_3:2194211-2194230 | None:intergenic | 50.0% | |
| !! | AGCTTTGTTCTCCTCCGTAC+CGG | + | chr1_3:2194381-2194400 | None:intergenic | 50.0% |
| CTCCGTGAACTTAGCTCAGT+TGG | - | chr1_3:2194656-2194675 | Msa0096490:intron | 50.0% | |
| ATCGGCCAAGCTCAAAAGCA+AGG | - | chr1_3:2195012-2195031 | Msa0096490:intron | 50.0% | |
| !! | GTCCACCTTGCTTTTGAGCT+TGG | + | chr1_3:2195020-2195039 | None:intergenic | 50.0% |
| GCTTGGATGCACTACTGAGA+AGG | + | chr1_3:2195063-2195082 | None:intergenic | 50.0% | |
| !! | TTCATAATTGGTGGTGGCGG+TGG | + | chr1_3:2195375-2195394 | None:intergenic | 50.0% |
| GGGAGACAGATGCAGATGAA+TGG | - | chr1_3:2195448-2195467 | Msa0096490:intron | 50.0% | |
| GAACAGCATGCAAACTGCCA+CGG | - | chr1_3:2196057-2196076 | Msa0096490:intron | 50.0% | |
| GTCCATTAGCCATCGCTATG+TGG | - | chr1_3:2196881-2196900 | Msa0096490:intron | 50.0% | |
| GCTATAAAAACCGCGCTCCT+TGG | + | chr1_3:2197113-2197132 | None:intergenic | 50.0% | |
| !!! | TCCGGGTGGGTTTTATTCTC+TGG | + | chr1_3:2197519-2197538 | None:intergenic | 50.0% |
| GACATACACACCTACTCTGG+GGG | + | chr1_3:2198838-2198857 | None:intergenic | 50.0% | |
| GGTGACATACACACCTACTC+TGG | + | chr1_3:2198841-2198860 | None:intergenic | 50.0% | |
| ACGGGACGTTACCGCAAAAA+CGG | - | chr1_3:2198963-2198982 | Msa0096490:intron | 50.0% | |
| CGGCCGTTACAAATCGGTAT+CGG | - | chr1_3:2198983-2199002 | Msa0096490:intron | 50.0% | |
| ACGACATTTCGCGGTCGTAA+CGG | + | chr1_3:2199091-2199110 | None:intergenic | 50.0% | |
| CTCCTGTTCTTCTGTTTCGC+GGG | + | chr1_3:2199118-2199137 | None:intergenic | 50.0% | |
| CAAATCGCAAGCAGGAAGGA+AGG | + | chr1_3:2199318-2199337 | None:intergenic | 50.0% | |
| ATCGCAAATCGCAAGCAGGA+AGG | + | chr1_3:2199322-2199341 | None:intergenic | 50.0% | |
| CAGAATCGCAAATCGCAAGC+AGG | + | chr1_3:2199326-2199345 | None:intergenic | 50.0% | |
| CTGCTTGCGATTTGCGATTC+TGG | - | chr1_3:2199324-2199343 | Msa0096490:intron | 50.0% | |
| GTTCGTTCTGCTTGCGATTC+TGG | - | chr1_3:2199348-2199367 | Msa0096490:CDS | 50.0% | |
| TGTCGCGATTTCGGCTGTAA+CGG | + | chr1_3:2200109-2200128 | None:intergenic | 50.0% | |
| AGCCAAACGCAAGCTAGTGA+AGG | - | chr1_3:2200486-2200505 | Msa0096490:intron | 50.0% | |
| ACGCAAGCTAGTGAAGGAAC+AGG | - | chr1_3:2200492-2200511 | Msa0096490:intron | 50.0% | |
| !!! | CTTTTGGCTTTCCTCAGCCT+TGG | + | chr1_3:2200859-2200878 | None:intergenic | 50.0% |
| GGAGTGAACTTGAACAGCGA+AGG | - | chr1_3:2200886-2200905 | Msa0096490:intron | 50.0% | |
| TGCAGATGCAGCGAGATTCA+AGG | - | chr1_3:2200959-2200978 | Msa0096490:intron | 50.0% | |
| TGTGGCAGTTTGCCTGTTGT+TGG | + | chr1_3:2201041-2201060 | None:intergenic | 50.0% | |
| GGTACAACTTACCGGTACGG+AGG | - | chr1_3:2194367-2194386 | Msa0096490:CDS | 55.0% | |
| TGAGCAGAAGAGTGAGAGCC+CGG | - | chr1_3:2194982-2195001 | Msa0096490:intron | 55.0% | |
| ! | GCTTTTGAGCTTGGCCGATG+AGG | + | chr1_3:2195011-2195030 | None:intergenic | 55.0% |
| GGCCAAGCTCAAAAGCAAGG+TGG | - | chr1_3:2195015-2195034 | Msa0096490:intron | 55.0% | |
| ATGTTGACGCCTTGTCACCC+TGG | + | chr1_3:2195227-2195246 | None:intergenic | 55.0% | |
| !! | ATAATTGGTGGTGGCGGTGG+CGG | + | chr1_3:2195372-2195391 | None:intergenic | 55.0% |
| CACTGCTGCAACTCCAGAGA+AGG | + | chr1_3:2196945-2196964 | None:intergenic | 55.0% | |
| !! | CTTCTCTGGAGTTGCAGCAG+TGG | - | chr1_3:2196943-2196962 | Msa0096490:intron | 55.0% |
| ! | TCTGGAGTTGCAGCAGTGGT+TGG | - | chr1_3:2196947-2196966 | Msa0096490:intron | 55.0% |
| ! | GGAAGGTTTGAAGCTGGCCA+AGG | - | chr1_3:2197093-2197112 | Msa0096490:intron | 55.0% |
| AAACCCACCCGGAAGAATGG+AGG | - | chr1_3:2197526-2197545 | Msa0096490:intron | 55.0% | |
| AAGGCACACTGAACCGTGTC+AGG | + | chr1_3:2198086-2198105 | None:intergenic | 55.0% | |
| AAACGCCGTTACGGCCGTTA+CGG | - | chr1_3:2199061-2199080 | Msa0096490:intron | 55.0% | |
| GTCGTAACGGCGTTCCGTAA+CGG | + | chr1_3:2199078-2199097 | None:intergenic | 55.0% | |
| CTAAAAAACGGTCGCGGTCG+CGG | + | chr1_3:2200144-2200163 | None:intergenic | 55.0% | |
| TGCAGACGGAGCAAATGCCA+AGG | - | chr1_3:2200839-2200858 | Msa0096490:intron | 55.0% | |
| GGGGGAAAGGGTTCCCTTCA+GGG | + | chr1_3:2194198-2194217 | None:intergenic | 60.0% | |
| !! | AGGAGGAGCATTTGGCGCTG+TGG | + | chr1_3:2195343-2195362 | None:intergenic | 60.0% |
| !! | TAATTGGTGGTGGCGGTGGC+GGG | + | chr1_3:2195371-2195390 | None:intergenic | 60.0% |
| TGCAGACGGCGCAAGAGCAA+AGG | - | chr1_3:2195977-2195996 | Msa0096490:intron | 60.0% | |
| TTGAAGCTGGCCAAGGAGCG+CGG | - | chr1_3:2197100-2197119 | Msa0096490:intron | 60.0% | |
| CCTCCTCCATTCTTCCGGGT+GGG | + | chr1_3:2197532-2197551 | None:intergenic | 60.0% | |
| TCCTCCTCCATTCTTCCGGG+TGG | + | chr1_3:2197533-2197552 | None:intergenic | 60.0% | |
| TGGGGGCTACCAAGCAAGGA+AGG | + | chr1_3:2198821-2198840 | None:intergenic | 60.0% | |
| ! | ACTCTGGGGGCTACCAAGCA+AGG | + | chr1_3:2198825-2198844 | None:intergenic | 60.0% |
| ! | TGCTTGGTAGCCCCCAGAGT+AGG | - | chr1_3:2198825-2198844 | Msa0096490:CDS | 60.0% |
| GCGTTCCGTAACGGCCGTAA+CGG | + | chr1_3:2199069-2199088 | None:intergenic | 60.0% | |
| GCGGGCGTAACGACATTTCG+CGG | + | chr1_3:2199100-2199119 | None:intergenic | 60.0% | |
| CGCCCGCGAAACAGAAGAAC+AGG | - | chr1_3:2199113-2199132 | Msa0096490:intron | 60.0% | |
| CACTTCTGCTTGCGTCTCCC+AGG | - | chr1_3:2199476-2199495 | Msa0096490:CDS | 60.0% | |
| CGGAGCAAATGCCAAGGCTG+AGG | - | chr1_3:2200845-2200864 | Msa0096490:intron | 60.0% | |
| CGGGGGAAAGGGTTCCCTTC+AGG | + | chr1_3:2194199-2194218 | None:intergenic | 65.0% | |
| GCAGAAGAGTGAGAGCCCGG+AGG | - | chr1_3:2194985-2195004 | Msa0096490:intron | 65.0% | |
| TGAGAGCCCGGAGGCCTCAT+CGG | - | chr1_3:2194994-2195013 | Msa0096490:intron | 65.0% | |
| AGCTTGGCCGATGAGGCCTC+CGG | + | chr1_3:2195004-2195023 | None:intergenic | 65.0% | |
| !! | GGGGGTGGAGGAGGAGCATT+TGG | + | chr1_3:2195351-2195370 | None:intergenic | 65.0% |
| !! | AATTGGTGGTGGCGGTGGCG+GGG | + | chr1_3:2195370-2195389 | None:intergenic | 65.0% |
| CGGCGCAAGAGCAAAGGTCG+AGG | - | chr1_3:2195983-2196002 | Msa0096490:intron | 65.0% | |
| CCCACCCGGAAGAATGGAGG+AGG | - | chr1_3:2197529-2197548 | Msa0096490:intron | 65.0% | |
| TCTGCTTGCGTCTCCCAGGC+AGG | - | chr1_3:2199480-2199499 | Msa0096490:CDS | 65.0% | |
| GCTTGGCCGATGAGGCCTCC+GGG | + | chr1_3:2195003-2195022 | None:intergenic | 70.0% | |
| !! | ATTGGTGGTGGCGGTGGCGG+GGG | + | chr1_3:2195369-2195388 | None:intergenic | 70.0% |
| TCGCGGTCGCGGTCGCGTTA+AGG | + | chr1_3:2200133-2200152 | None:intergenic | 70.0% | |
| !!! | GGCGGTGGCGGGGGTGGAGG+AGG | + | chr1_3:2195360-2195379 | None:intergenic | 85.0% |
| !!! | GGTGGCGGTGGCGGGGGTGG+AGG | + | chr1_3:2195363-2195382 | None:intergenic | 85.0% |
| !!! | GGTGGTGGCGGTGGCGGGGG+TGG | + | chr1_3:2195366-2195385 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 2193761 | 2201079 | 2193761 | ID=Msa0096490;Name=Msa0096490 |
| chr1_3 | mRNA | 2193761 | 2201079 | 2193761 | ID=Msa0096490-mRNA-1;Parent=Msa0096490;Name=Msa0096490-mRNA-1;_AED=0.29;_eAED=0.29;_QI=37|0.85|0.75|1|0.85|0.87|8|0|436 |
| chr1_3 | exon | 2193761 | 2194069 | 2193761 | ID=Msa0096490-mRNA-1:exon:564;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2194327 | 2194408 | 2194327 | ID=Msa0096490-mRNA-1:exon:563;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2198759 | 2198934 | 2198759 | ID=Msa0096490-mRNA-1:exon:562;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2199131 | 2199212 | 2199131 | ID=Msa0096490-mRNA-1:exon:561;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2199338 | 2199638 | 2199338 | ID=Msa0096490-mRNA-1:exon:560;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2199749 | 2199991 | 2199749 | ID=Msa0096490-mRNA-1:exon:559;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2200382 | 2200473 | 2200382 | ID=Msa0096490-mRNA-1:exon:558;Parent=Msa0096490-mRNA-1 |
| chr1_3 | exon | 2201017 | 2201079 | 2201017 | ID=Msa0096490-mRNA-1:exon:557;Parent=Msa0096490-mRNA-1 |
| chr1_3 | five_prime_UTR | 2201043 | 2201079 | 2201043 | ID=Msa0096490-mRNA-1:five_prime_utr;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2201017 | 2201042 | 2201017 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2200382 | 2200473 | 2200382 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2199749 | 2199991 | 2199749 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2199338 | 2199638 | 2199338 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2199131 | 2199212 | 2199131 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2198759 | 2198934 | 2198759 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2194327 | 2194408 | 2194327 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| chr1_3 | CDS | 2193761 | 2194069 | 2193761 | ID=Msa0096490-mRNA-1:cds;Parent=Msa0096490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
