Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183980 | XP_013443805.1 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 1.09e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183980 | I3SHZ2 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 5.18e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043290 | Msa1183980 | 0.853384 | 2.476682e-61 | -8.615850e-47 |
| Msa0096490 | Msa1183980 | 0.802146 | 6.442632e-49 | -8.615850e-47 |
| Msa0616510 | Msa1183980 | 0.831923 | 1.267455e-55 | -8.615850e-47 |
| Msa0699840 | Msa1183980 | 0.844339 | 8.039023e-59 | -8.615850e-47 |
| Msa0137210 | Msa1183980 | 0.813215 | 2.865197e-51 | -8.615850e-47 |
| Msa0164400 | Msa1183980 | 0.808411 | 3.138290e-50 | -8.615850e-47 |
| Msa0194820 | Msa1183980 | 0.808902 | 2.465027e-50 | -8.615850e-47 |
| Msa0194840 | Msa1183980 | 0.800012 | 1.759767e-48 | -8.615850e-47 |
| Msa0418970 | Msa1183980 | 0.818139 | 2.290429e-52 | -8.615850e-47 |
| Msa0460550 | Msa1183980 | 0.806025 | 1.005012e-49 | -8.615850e-47 |
| Msa0471460 | Msa1183980 | 0.815494 | 8.982929e-52 | -8.615850e-47 |
| Msa1020630 | Msa1183980 | 0.801829 | 7.484018e-49 | -8.615850e-47 |
| Msa1183980 | Msa1226840 | 0.909067 | 8.576812e-82 | -8.615850e-47 |
| Msa1183980 | Msa1228390 | 0.956652 | 1.778574e-114 | -8.615850e-47 |
| Msa1183980 | Msa1228420 | 0.997977 | 2.657878e-253 | -8.615850e-47 |
| Msa1183980 | Msa1341890 | 0.833419 | 5.390452e-56 | -8.615850e-47 |
| Msa1183980 | Msa1405340 | 0.997321 | 1.665597e-240 | -8.615850e-47 |
| Msa0562620 | Msa1183980 | 0.852067 | 5.886365e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183980 | MtrunA17_Chr8g0335231 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 9.98e-115 | 322 |
| Msa1183980 | MtrunA17_Chr4g0052031 | 63.333 | 90 | 31 | 2 | 72 | 160 | 120 | 208 | 9.93e-32 | 115 |
| Msa1183980 | MtrunA17_Chr8g0337391 | 28.333 | 120 | 83 | 2 | 32 | 148 | 33 | 152 | 4.07e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183980 | AT4G37445.1 | 52.201 | 159 | 75 | 1 | 6 | 163 | 3 | 161 | 1.70e-54 | 170 |
| Msa1183980 | AT4G37445.2 | 53.472 | 144 | 67 | 0 | 20 | 163 | 2 | 145 | 1.21e-51 | 162 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAAGTGAAAATTAAAT+AGG | 0.234371 | 8_1:-19513474 | None:intergenic |
| TATATACACAAATATATATT+TGG | 0.268577 | 8_1:+19512333 | Msa1183980:five_prime_UTR |
| CATTGATTTCATGATCAATA+AGG | 0.282087 | 8_1:+19513245 | Msa1183980:CDS |
| TTTCTTGAATGACATTCTTT+TGG | 0.312655 | 8_1:-19513603 | None:intergenic |
| TTTCTTCAATGACATACTTT+TGG | 0.319686 | 8_1:-19513445 | None:intergenic |
| ACCATCACACAAGGAAATTA+AGG | 0.323749 | 8_1:+19513167 | Msa1183980:CDS |
| GATGATTCTATGATGATAAC+TGG | 0.356747 | 8_1:+19513285 | Msa1183980:CDS |
| CAGACATTAGATCTTGTATC+AGG | 0.382635 | 8_1:+19512583 | Msa1183980:CDS |
| CTTGTCCACTGATGTTAATA+AGG | 0.387576 | 8_1:+19513553 | Msa1183980:three_prime_UTR |
| CTGATACAAGATCTAATGTC+TGG | 0.398337 | 8_1:-19512582 | None:intergenic |
| ATAGCACAATTACAAGCAAT+TGG | 0.429151 | 8_1:-19513519 | None:intergenic |
| ATGAGTTACATGGGAGGATC+AGG | 0.435033 | 8_1:+19512408 | Msa1183980:CDS |
| TATGATGATAACTGGAATAG+TGG | 0.452300 | 8_1:+19513293 | Msa1183980:CDS |
| GCTATGGTAGCTAAGAGAAC+AGG | 0.456395 | 8_1:+19513327 | Msa1183980:CDS |
| CTCTTAGCTACCATAGCTGC+TGG | 0.471596 | 8_1:-19513321 | None:intergenic |
| ATGTTTCTTCTTATCTTCCT+CGG | 0.474190 | 8_1:-19513217 | None:intergenic |
| AGTGGCTCTTATTGCTGTAA+AGG | 0.481060 | 8_1:+19513577 | Msa1183980:three_prime_UTR |
| ACTATTAACATGGCCTTGCC+TGG | 0.488789 | 8_1:+19513129 | Msa1183980:CDS |
| TCCTTAATTTCCTTGTGTGA+TGG | 0.508644 | 8_1:-19513168 | None:intergenic |
| ATCATAATGCTTACCAGGCA+AGG | 0.514482 | 8_1:-19513142 | None:intergenic |
| GAGCTAAAATAGTAGCTGTT+GGG | 0.514762 | 8_1:-19513404 | None:intergenic |
| GTTGGGACAAAGATAACATC+AGG | 0.516476 | 8_1:-19513387 | None:intergenic |
| ATCAAGAATGGCAGTGTGGA+AGG | 0.518421 | 8_1:-19512653 | None:intergenic |
| AGAGCTAAAATAGTAGCTGT+TGG | 0.518631 | 8_1:-19513405 | None:intergenic |
| AGTGGCACCTCCAGCAGCTA+TGG | 0.520301 | 8_1:+19513311 | Msa1183980:CDS |
| TTACTTGAAGATATCAAGAA+TGG | 0.537162 | 8_1:-19512665 | None:intergenic |
| GGGGATGATCATGAGTTACA+TGG | 0.552167 | 8_1:+19512398 | Msa1183980:CDS |
| GGTACATCATAATGCTTACC+AGG | 0.555755 | 8_1:-19513147 | None:intergenic |
| CACTGATGTTAATAAGGCAG+TGG | 0.559465 | 8_1:+19513559 | Msa1183980:three_prime_UTR |
| GACAAAGATAACATCAGGAA+TGG | 0.591291 | 8_1:-19513382 | None:intergenic |
| TGATACAAGATCTAATGTCT+GGG | 0.602501 | 8_1:-19512581 | None:intergenic |
| CACTGCCTTATTAACATCAG+TGG | 0.624636 | 8_1:-19513558 | None:intergenic |
| TTAGCTACCATAGCTGCTGG+AGG | 0.629958 | 8_1:-19513318 | None:intergenic |
| GCTTTCATAACACTTAGTTG+AGG | 0.635041 | 8_1:-19513360 | None:intergenic |
| GGGATGATCATGAGTTACAT+GGG | 0.647259 | 8_1:+19512399 | Msa1183980:CDS |
| AAACTGGAATAAAACATCCG+AGG | 0.684088 | 8_1:+19513200 | Msa1183980:CDS |
| TTATGATGTACCATCACACA+AGG | 0.699802 | 8_1:+19513158 | Msa1183980:CDS |
| AGATATCAAGAATGGCAGTG+TGG | 0.711163 | 8_1:-19512657 | None:intergenic |
| ATGATCATGAGTTACATGGG+AGG | 0.727517 | 8_1:+19512402 | Msa1183980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | chr8_1:19512318-19512337 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | chr8_1:19512333-19512352 | Msa1183980:five_prime_UTR | 10.0% |
| !! | CTTGTAAAAAAAAAAAAAAA+AGG | + | chr8_1:19512722-19512741 | Msa1183980:intron | 10.0% |
| !!! | AAACATGAATATTATTTTAA+AGG | + | chr8_1:19512810-19512829 | Msa1183980:intron | 10.0% |
| !! | ATTAAAAGTGAAAATTAAAT+AGG | - | chr8_1:19513477-19513496 | None:intergenic | 10.0% |
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | chr8_1:19512318-19512337 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | chr8_1:19512333-19512352 | Msa1183980:five_prime_UTR | 10.0% |
| !! | CTTGTAAAAAAAAAAAAAAA+AGG | + | chr8_1:19512722-19512741 | Msa1183980:intron | 10.0% |
| !!! | AAACATGAATATTATTTTAA+AGG | + | chr8_1:19512810-19512829 | Msa1183980:intron | 10.0% |
| !! | ATTAAAAGTGAAAATTAAAT+AGG | - | chr8_1:19513477-19513496 | None:intergenic | 10.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | chr8_1:19512378-19512397 | Msa1183980:exon | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | chr8_1:19512544-19512563 | Msa1183980:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | chr8_1:19512729-19512748 | Msa1183980:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | chr8_1:19512730-19512749 | Msa1183980:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | chr8_1:19512843-19512862 | Msa1183980:intron | 15.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | chr8_1:19512378-19512397 | Msa1183980:exon | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | chr8_1:19512544-19512563 | Msa1183980:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | chr8_1:19512729-19512748 | Msa1183980:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | chr8_1:19512730-19512749 | Msa1183980:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | chr8_1:19512843-19512862 | Msa1183980:intron | 15.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | chr8_1:19512377-19512396 | Msa1183980:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | chr8_1:19512379-19512398 | Msa1183980:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | chr8_1:19512456-19512475 | None:intergenic | 20.0% |
| !! | AGCAATAAAAAAAAAACTAG+TGG | - | chr8_1:19512465-19512484 | None:intergenic | 20.0% |
| !!! | CTAGTTTTTTTTTTATTGCT+AGG | + | chr8_1:19512465-19512484 | Msa1183980:intron | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | chr8_1:19512731-19512750 | Msa1183980:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | chr8_1:19512784-19512803 | Msa1183980:intron | 20.0% |
| !! | TTGATATCAAATGTTGAATA+TGG | - | chr8_1:19513064-19513083 | None:intergenic | 20.0% |
| !! | TTCAACATTTGATATCAATT+TGG | + | chr8_1:19513066-19513085 | Msa1183980:intron | 20.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | chr8_1:19512377-19512396 | Msa1183980:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | chr8_1:19512379-19512398 | Msa1183980:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | chr8_1:19512456-19512475 | None:intergenic | 20.0% |
| !! | AGCAATAAAAAAAAAACTAG+TGG | - | chr8_1:19512465-19512484 | None:intergenic | 20.0% |
| !!! | CTAGTTTTTTTTTTATTGCT+AGG | + | chr8_1:19512465-19512484 | Msa1183980:intron | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | chr8_1:19512731-19512750 | Msa1183980:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | chr8_1:19512784-19512803 | Msa1183980:intron | 20.0% |
| !! | TTGATATCAAATGTTGAATA+TGG | - | chr8_1:19513064-19513083 | None:intergenic | 20.0% |
| !! | TTCAACATTTGATATCAATT+TGG | + | chr8_1:19513066-19513085 | Msa1183980:intron | 20.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | chr8_1:19512345-19512364 | Msa1183980:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | chr8_1:19512668-19512687 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | chr8_1:19512849-19512868 | Msa1183980:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | chr8_1:19512860-19512879 | Msa1183980:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | chr8_1:19512952-19512971 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | chr8_1:19513003-19513022 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | chr8_1:19513004-19513023 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | chr8_1:19513119-19513138 | Msa1183980:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | chr8_1:19513245-19513264 | Msa1183980:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | chr8_1:19513448-19513467 | None:intergenic | 25.0% |
| !! | TTTCTTGAATGACATTCTTT+TGG | - | chr8_1:19513606-19513625 | None:intergenic | 25.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | chr8_1:19512345-19512364 | Msa1183980:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | chr8_1:19512668-19512687 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | chr8_1:19512849-19512868 | Msa1183980:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | chr8_1:19512860-19512879 | Msa1183980:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | chr8_1:19512952-19512971 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | chr8_1:19513003-19513022 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | chr8_1:19513004-19513023 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | chr8_1:19513119-19513138 | Msa1183980:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | chr8_1:19513245-19513264 | Msa1183980:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | chr8_1:19513448-19513467 | None:intergenic | 25.0% |
| !! | TTTCTTGAATGACATTCTTT+TGG | - | chr8_1:19513606-19513625 | None:intergenic | 25.0% |
| TTAAGAAAAAATGTGGACCT+AGG | - | chr8_1:19512311-19512330 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | chr8_1:19512549-19512568 | Msa1183980:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | chr8_1:19512550-19512569 | Msa1183980:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | chr8_1:19512584-19512603 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | chr8_1:19513000-19513019 | Msa1183980:intron | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | chr8_1:19513184-19513203 | Msa1183980:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | chr8_1:19513220-19513239 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | chr8_1:19513285-19513304 | Msa1183980:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | chr8_1:19513293-19513312 | Msa1183980:CDS | 30.0% | |
| ATAGCACAATTACAAGCAAT+TGG | - | chr8_1:19513522-19513541 | None:intergenic | 30.0% | |
| TTAAGAAAAAATGTGGACCT+AGG | - | chr8_1:19512311-19512330 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | chr8_1:19512549-19512568 | Msa1183980:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | chr8_1:19512550-19512569 | Msa1183980:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | chr8_1:19512584-19512603 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | chr8_1:19513000-19513019 | Msa1183980:intron | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | chr8_1:19513184-19513203 | Msa1183980:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | chr8_1:19513220-19513239 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | chr8_1:19513285-19513304 | Msa1183980:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | chr8_1:19513293-19513312 | Msa1183980:CDS | 30.0% | |
| ATAGCACAATTACAAGCAAT+TGG | - | chr8_1:19513522-19513541 | None:intergenic | 30.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | chr8_1:19512585-19512604 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | chr8_1:19512583-19512602 | Msa1183980:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | chr8_1:19512925-19512944 | None:intergenic | 35.0% | |
| TTATGATGTACCATCACACA+AGG | + | chr8_1:19513158-19513177 | Msa1183980:CDS | 35.0% | |
| ACCATCACACAAGGAAATTA+AGG | + | chr8_1:19513167-19513186 | Msa1183980:CDS | 35.0% | |
| TCCTTAATTTCCTTGTGTGA+TGG | - | chr8_1:19513171-19513190 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | chr8_1:19513200-19513219 | Msa1183980:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | chr8_1:19513363-19513382 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | chr8_1:19513385-19513404 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | chr8_1:19513407-19513426 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | chr8_1:19513408-19513427 | None:intergenic | 35.0% | |
| CTTGTCCACTGATGTTAATA+AGG | + | chr8_1:19513553-19513572 | Msa1183980:three_prime_UTR | 35.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | chr8_1:19512585-19512604 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | chr8_1:19512583-19512602 | Msa1183980:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | chr8_1:19512925-19512944 | None:intergenic | 35.0% | |
| TTATGATGTACCATCACACA+AGG | + | chr8_1:19513158-19513177 | Msa1183980:CDS | 35.0% | |
| ACCATCACACAAGGAAATTA+AGG | + | chr8_1:19513167-19513186 | Msa1183980:CDS | 35.0% | |
| TCCTTAATTTCCTTGTGTGA+TGG | - | chr8_1:19513171-19513190 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | chr8_1:19513200-19513219 | Msa1183980:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | chr8_1:19513363-19513382 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | chr8_1:19513385-19513404 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | chr8_1:19513407-19513426 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | chr8_1:19513408-19513427 | None:intergenic | 35.0% | |
| CTTGTCCACTGATGTTAATA+AGG | + | chr8_1:19513553-19513572 | Msa1183980:three_prime_UTR | 35.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | chr8_1:19512399-19512418 | Msa1183980:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | chr8_1:19512402-19512421 | Msa1183980:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | chr8_1:19512660-19512679 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | chr8_1:19512916-19512935 | Msa1183980:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | chr8_1:19512920-19512939 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | chr8_1:19513145-19513164 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | chr8_1:19513150-19513169 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | chr8_1:19513390-19513409 | None:intergenic | 40.0% | |
| ! | CACTGCCTTATTAACATCAG+TGG | - | chr8_1:19513561-19513580 | None:intergenic | 40.0% |
| CACTGATGTTAATAAGGCAG+TGG | + | chr8_1:19513559-19513578 | Msa1183980:three_prime_UTR | 40.0% | |
| AGTGGCTCTTATTGCTGTAA+AGG | + | chr8_1:19513577-19513596 | Msa1183980:three_prime_UTR | 40.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | chr8_1:19512399-19512418 | Msa1183980:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | chr8_1:19512402-19512421 | Msa1183980:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | chr8_1:19512660-19512679 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | chr8_1:19512916-19512935 | Msa1183980:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | chr8_1:19512920-19512939 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | chr8_1:19513145-19513164 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | chr8_1:19513150-19513169 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | chr8_1:19513390-19513409 | None:intergenic | 40.0% | |
| ! | CACTGCCTTATTAACATCAG+TGG | - | chr8_1:19513561-19513580 | None:intergenic | 40.0% |
| CACTGATGTTAATAAGGCAG+TGG | + | chr8_1:19513559-19513578 | Msa1183980:three_prime_UTR | 40.0% | |
| AGTGGCTCTTATTGCTGTAA+AGG | + | chr8_1:19513577-19513596 | Msa1183980:three_prime_UTR | 40.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | chr8_1:19512398-19512417 | Msa1183980:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | chr8_1:19512408-19512427 | Msa1183980:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | chr8_1:19512656-19512675 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | chr8_1:19513129-19513148 | Msa1183980:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | chr8_1:19513327-19513346 | Msa1183980:CDS | 45.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | chr8_1:19512398-19512417 | Msa1183980:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | chr8_1:19512408-19512427 | Msa1183980:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | chr8_1:19512656-19512675 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | chr8_1:19513129-19513148 | Msa1183980:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | chr8_1:19513327-19513346 | Msa1183980:CDS | 45.0% | |
| TTAGCTACCATAGCTGCTGG+AGG | - | chr8_1:19513321-19513340 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | chr8_1:19513324-19513343 | None:intergenic | 50.0% | |
| TTAGCTACCATAGCTGCTGG+AGG | - | chr8_1:19513321-19513340 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | chr8_1:19513324-19513343 | None:intergenic | 50.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | chr8_1:19513311-19513330 | Msa1183980:CDS | 60.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | chr8_1:19513311-19513330 | Msa1183980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 19512307 | 19513704 | 19512307 | ID=Msa1183980;Name=Msa1183980 |
| chr8_1 | mRNA | 19512307 | 19513704 | 19512307 | ID=Msa1183980-mRNA-1;Parent=Msa1183980;Name=Msa1183980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|3|222|168 |
| chr8_1 | exon | 19512307 | 19512429 | 19512307 | ID=Msa1183980-mRNA-1:exon:7530;Parent=Msa1183980-mRNA-1 |
| chr8_1 | exon | 19512566 | 19512683 | 19512566 | ID=Msa1183980-mRNA-1:exon:7531;Parent=Msa1183980-mRNA-1 |
| chr8_1 | exon | 19513128 | 19513704 | 19513128 | ID=Msa1183980-mRNA-1:exon:7532;Parent=Msa1183980-mRNA-1 |
| chr8_1 | five_prime_UTR | 19512307 | 19512395 | 19512307 | ID=Msa1183980-mRNA-1:five_prime_utr;Parent=Msa1183980-mRNA-1 |
| chr8_1 | CDS | 19512396 | 19512429 | 19512396 | ID=Msa1183980-mRNA-1:cds;Parent=Msa1183980-mRNA-1 |
| chr8_1 | CDS | 19512566 | 19512683 | 19512566 | ID=Msa1183980-mRNA-1:cds;Parent=Msa1183980-mRNA-1 |
| chr8_1 | CDS | 19513128 | 19513482 | 19513128 | ID=Msa1183980-mRNA-1:cds;Parent=Msa1183980-mRNA-1 |
| chr8_1 | three_prime_UTR | 19513483 | 19513704 | 19513483 | ID=Msa1183980-mRNA-1:three_prime_utr;Parent=Msa1183980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
