Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0097070 | XP_003589128.1 | 98.720 | 547 | 7 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1095 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0097070 | sp|Q9C626|FB37_ARATH | 66.116 | 484 | 158 | 4 | 55 | 536 | 34 | 513 | 0.0 | 626 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0097070 | Q2HTR2 | 98.720 | 547 | 7 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1095 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0052440 | Msa0097070 | 0.868578 | 5.883109e-66 | -8.615850e-47 |
Msa0097070 | Msa0186620 | 0.999186 | 8.393098e-295 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0097070 | MtrunA17_Chr1g0152951 | 98.720 | 547 | 7 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1095 |
Msa0097070 | MtrunA17_Chr4g0053361 | 54.472 | 492 | 218 | 3 | 52 | 538 | 34 | 524 | 0.0 | 538 |
Msa0097070 | MtrunA17_Chr2g0286991 | 28.541 | 466 | 251 | 16 | 59 | 449 | 5 | 463 | 1.76e-29 | 122 |
Msa0097070 | MtrunA17_Chr2g0286991 | 26.171 | 363 | 224 | 12 | 98 | 453 | 245 | 570 | 1.49e-17 | 85.9 |
Msa0097070 | MtrunA17_Chr4g0048391 | 23.061 | 490 | 246 | 18 | 57 | 443 | 19 | 480 | 2.12e-17 | 85.5 |
Msa0097070 | MtrunA17_Chr7g0251831 | 24.390 | 492 | 259 | 17 | 61 | 446 | 1 | 485 | 5.88e-16 | 80.9 |
Msa0097070 | MtrunA17_Chr1g0196061 | 21.756 | 501 | 256 | 17 | 64 | 446 | 14 | 496 | 1.66e-15 | 79.7 |
Msa0097070 | MtrunA17_Chr1g0212071 | 24.471 | 425 | 230 | 13 | 66 | 455 | 23 | 391 | 4.63e-15 | 77.4 |
Msa0097070 | MtrunA17_Chr4g0004901 | 26.923 | 260 | 181 | 6 | 187 | 443 | 365 | 618 | 5.54e-15 | 78.2 |
Msa0097070 | MtrunA17_Chr4g0004901 | 29.600 | 250 | 168 | 6 | 134 | 381 | 389 | 632 | 6.16e-15 | 78.2 |
Msa0097070 | MtrunA17_Chr4g0004901 | 26.265 | 415 | 227 | 13 | 103 | 450 | 146 | 548 | 1.25e-11 | 67.4 |
Msa0097070 | MtrunA17_Chr8g0347711 | 25.272 | 368 | 218 | 13 | 61 | 383 | 12 | 367 | 3.53e-14 | 74.3 |
Msa0097070 | MtrunA17_Chr4g0041191 | 24.520 | 469 | 247 | 16 | 54 | 470 | 3 | 416 | 6.12e-14 | 74.7 |
Msa0097070 | MtrunA17_Chr1g0149351 | 24.012 | 329 | 206 | 12 | 134 | 450 | 224 | 520 | 7.19e-14 | 74.3 |
Msa0097070 | MtrunA17_Chr1g0149351 | 30.370 | 135 | 66 | 3 | 320 | 453 | 177 | 284 | 9.13e-12 | 67.8 |
Msa0097070 | MtrunA17_Chr3g0137771 | 37.143 | 140 | 82 | 4 | 320 | 453 | 143 | 282 | 7.11e-13 | 71.2 |
Msa0097070 | MtrunA17_Chr3g0137771 | 22.179 | 514 | 259 | 15 | 61 | 434 | 68 | 580 | 1.34e-11 | 67.4 |
Msa0097070 | MtrunA17_Chr3g0137771 | 30.052 | 193 | 98 | 7 | 294 | 453 | 200 | 388 | 3.48e-11 | 65.9 |
Msa0097070 | MtrunA17_Chr1g0176031 | 27.668 | 253 | 159 | 9 | 120 | 361 | 77 | 316 | 1.06e-12 | 69.7 |
Msa0097070 | MtrunA17_Chr7g0272131 | 26.149 | 348 | 215 | 13 | 138 | 453 | 197 | 534 | 3.01e-12 | 69.3 |
Msa0097070 | MtrunA17_Chr4g0000931 | 28.179 | 291 | 158 | 11 | 64 | 341 | 40 | 292 | 9.88e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0097070 | AT1G47056.1 | 66.116 | 484 | 158 | 4 | 55 | 536 | 34 | 513 | 0.0 | 626 |
Msa0097070 | AT4G07400.1 | 61.154 | 520 | 185 | 6 | 14 | 531 | 35 | 539 | 0.0 | 605 |
Msa0097070 | AT5G67250.1 | 55.985 | 543 | 209 | 6 | 1 | 538 | 1 | 518 | 0.0 | 552 |
Msa0097070 | AT3G50080.1 | 56.790 | 486 | 200 | 6 | 56 | 538 | 36 | 514 | 0.0 | 530 |
Msa0097070 | AT4G15475.1 | 29.394 | 330 | 211 | 13 | 127 | 447 | 274 | 590 | 6.21e-23 | 103 |
Msa0097070 | AT4G15475.1 | 27.696 | 408 | 243 | 12 | 51 | 453 | 3 | 363 | 3.65e-22 | 100 |
Msa0097070 | AT2G25490.1 | 26.107 | 429 | 273 | 16 | 61 | 453 | 64 | 484 | 4.91e-17 | 85.1 |
Msa0097070 | AT2G25490.1 | 25.000 | 360 | 203 | 9 | 134 | 432 | 212 | 565 | 3.66e-14 | 75.9 |
Msa0097070 | AT5G27920.1 | 27.019 | 359 | 213 | 13 | 137 | 459 | 158 | 503 | 7.71e-16 | 81.3 |
Msa0097070 | AT5G27920.1 | 26.087 | 299 | 148 | 9 | 158 | 446 | 332 | 567 | 1.61e-11 | 67.4 |
Msa0097070 | AT1G12820.1 | 24.590 | 427 | 252 | 13 | 61 | 443 | 1 | 401 | 9.96e-15 | 77.4 |
Msa0097070 | AT5G01720.1 | 28.516 | 256 | 165 | 6 | 134 | 382 | 338 | 582 | 5.25e-14 | 75.5 |
Msa0097070 | AT5G01720.1 | 23.780 | 492 | 264 | 17 | 64 | 452 | 16 | 499 | 4.54e-12 | 69.3 |
Msa0097070 | AT5G23340.1 | 25.740 | 338 | 181 | 13 | 64 | 365 | 10 | 313 | 1.82e-13 | 72.8 |
Msa0097070 | AT1G80570.2 | 23.448 | 435 | 267 | 15 | 55 | 453 | 8 | 412 | 2.50e-13 | 72.8 |
Msa0097070 | AT3G26810.1 | 24.700 | 417 | 262 | 16 | 61 | 443 | 1 | 399 | 2.54e-13 | 73.2 |
Msa0097070 | AT3G07550.1 | 24.451 | 364 | 217 | 14 | 61 | 377 | 15 | 367 | 5.18e-13 | 71.2 |
Msa0097070 | AT3G07550.2 | 24.451 | 364 | 217 | 14 | 61 | 377 | 15 | 367 | 5.18e-13 | 71.2 |
Msa0097070 | AT1G80570.1 | 24.242 | 429 | 259 | 17 | 61 | 453 | 1 | 399 | 8.72e-13 | 70.9 |
Msa0097070 | AT1G80570.3 | 24.242 | 429 | 259 | 17 | 61 | 453 | 1 | 399 | 8.72e-13 | 70.9 |
Msa0097070 | AT5G25350.1 | 32.653 | 196 | 89 | 7 | 294 | 453 | 180 | 368 | 4.81e-12 | 68.9 |
Msa0097070 | AT4G03190.1 | 22.426 | 437 | 243 | 13 | 80 | 443 | 22 | 435 | 4.82e-11 | 65.9 |
Find 150 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCACCAATTCTTGCAAATT+AGG | 0.147721 | 1_3:+2865739 | None:intergenic |
GACCTTCACTTTCACCAAAT+TGG | 0.167556 | 1_3:+2865510 | None:intergenic |
TATTTCGAATTGTTCGAATT+TGG | 0.247249 | 1_3:-2865914 | Msa0097070:CDS |
AGTTGTCCTGTTTCTGATCT+TGG | 0.260446 | 1_3:-2865559 | Msa0097070:CDS |
AGGCTTCAGATTAGTGATAT+TGG | 0.286479 | 1_3:-2865946 | Msa0097070:CDS |
TTGCAAGAATTGGTGCTTAT+TGG | 0.291569 | 1_3:-2865733 | Msa0097070:CDS |
TCGTGTGGATCTTGTACTTT+TGG | 0.297932 | 1_3:-2866270 | Msa0097070:CDS |
CTTTATAATGGACAGTGTTT+TGG | 0.307331 | 1_3:-2866096 | Msa0097070:CDS |
ATCGGTTGCCTGCACTTTCC+CGG | 0.307896 | 1_3:+2866778 | None:intergenic |
GACACCTGAGTGTACTGATA+TGG | 0.308361 | 1_3:-2865872 | Msa0097070:CDS |
TGATCTTGGGATGGAAGCTT+TGG | 0.309384 | 1_3:-2865545 | Msa0097070:CDS |
GCACCAATTCTTGCAAATTA+GGG | 0.310819 | 1_3:+2865740 | None:intergenic |
GGCGGTGGATCTGTTGGTTT+TGG | 0.323583 | 1_3:+2866752 | None:intergenic |
TTGCCCTAATTTGCAAGAAT+TGG | 0.326430 | 1_3:-2865743 | Msa0097070:CDS |
CTGAAAGATGTAAGTTGTTA+AGG | 0.328374 | 1_3:-2865834 | Msa0097070:CDS |
ACCTTCACTTTCACCAAATT+GGG | 0.329278 | 1_3:+2865511 | None:intergenic |
GGCACATGGGTGTCCCAATT+TGG | 0.331746 | 1_3:-2865524 | Msa0097070:CDS |
CTCAACCAATCCCCGCCTTC+AGG | 0.338516 | 1_3:+2865466 | None:intergenic |
ATCAGTGTTCACTCGTTTGC+CGG | 0.338793 | 1_3:-2866572 | Msa0097070:CDS |
TGTTTGAAGGAACTTTATAA+TGG | 0.338946 | 1_3:-2866108 | Msa0097070:CDS |
TATTTCGATGTTCCGGTGAT+TGG | 0.339573 | 1_3:-2866032 | Msa0097070:CDS |
CTAAGAATTGTAAGGGTTTG+AGG | 0.347732 | 1_3:-2866299 | Msa0097070:CDS |
AATTGTCGGTGAAGCGGCTT+AGG | 0.348422 | 1_3:-2866200 | Msa0097070:CDS |
GTTGTCCTGTTTCTGATCTT+GGG | 0.350129 | 1_3:-2865558 | Msa0097070:CDS |
CGCGACACGCGCGGAGCTTA+AGG | 0.354968 | 1_3:+2866352 | None:intergenic |
TTGCATTGCTGCAAAGTGTT+TGG | 0.356470 | 1_3:-2865605 | Msa0097070:CDS |
CGCGAAGTTTGATCTTCTTC+CGG | 0.356911 | 1_3:-2866502 | Msa0097070:CDS |
TTGAAGCTATTTCGATGTTC+CGG | 0.378035 | 1_3:-2866039 | Msa0097070:CDS |
TAACCCAACGAGAGTGAGTT+TGG | 0.378471 | 1_3:-2865707 | Msa0097070:CDS |
AGTTCATTCAAGCAAAGGTT+AGG | 0.388373 | 1_3:-2865274 | Msa0097070:CDS |
AAAGCCAATCTCTCTAGATT+CGG | 0.392075 | 1_3:+2865664 | None:intergenic |
GTTGAAGACGATTTGTTTGA+AGG | 0.397116 | 1_3:-2866121 | Msa0097070:CDS |
TTAAGGAAGCTACATATTGA+TGG | 0.408793 | 1_3:-2865817 | Msa0097070:CDS |
CGATGTAGATGCCGCGGAGC+CGG | 0.410875 | 1_3:+2865330 | None:intergenic |
GCCGCGGAGCCGGGCATTGA+AGG | 0.418437 | 1_3:+2865340 | None:intergenic |
ATTTCGATGTTCCGGTGATT+GGG | 0.419025 | 1_3:-2866031 | Msa0097070:CDS |
GGTTTCCGTAGCTGTGAATC+TGG | 0.427319 | 1_3:-2865434 | Msa0097070:CDS |
GGGATTGGTTGAGGCACACT+AGG | 0.428246 | 1_3:-2865456 | Msa0097070:CDS |
ACTTTCCCGGCGGTTGGTTC+CGG | 0.430973 | 1_3:+2866791 | None:intergenic |
CCGCGCGTGTCGCGAACTTA+CGG | 0.432226 | 1_3:-2866343 | Msa0097070:CDS |
GATGTAGATGCCGCGGAGCC+GGG | 0.436914 | 1_3:+2865331 | None:intergenic |
GCCTGCACTTTCCCGGCGGT+TGG | 0.443897 | 1_3:+2866785 | None:intergenic |
GTTCACTCGTTTGCCGGCGG+TGG | 0.448947 | 1_3:-2866566 | Msa0097070:CDS |
GGGATGGAAGCTTTGGCACA+TGG | 0.450411 | 1_3:-2865538 | Msa0097070:CDS |
GCAAATCGGATTGGCGATGA+AGG | 0.452211 | 1_3:-2865787 | Msa0097070:CDS |
TGGCTAGCACTTTGAGAAGA+TGG | 0.454655 | 1_3:-2865228 | Msa0097070:CDS |
TTGCCCGAATCTAGAGAGAT+TGG | 0.454730 | 1_3:-2865668 | Msa0097070:CDS |
TTAAACAGAGAAGGAATTAC+CGG | 0.456733 | 1_3:+2866483 | None:intergenic |
CGGTGACGATGTTGCAGATC+CGG | 0.458209 | 1_3:-2866700 | Msa0097070:CDS |
TCGTTACCGTCACCGTCAAC+CGG | 0.458796 | 1_3:+2866681 | None:intergenic |
CGGCGGTGGCTTCACGTTGA+AGG | 0.459312 | 1_3:-2866552 | Msa0097070:CDS |
TGTCGCGAACTTACGGATGC+TGG | 0.459477 | 1_3:-2866336 | Msa0097070:CDS |
CGAACTTACGGATGCTGGAA+TGG | 0.461081 | 1_3:-2866331 | Msa0097070:CDS |
CAAAGGTTAGGGCTACTGTC+CGG | 0.463095 | 1_3:-2865262 | Msa0097070:CDS |
AGGTAGTTCTGATATATAAT+CGG | 0.463807 | 1_3:+2866644 | None:intergenic |
AGCTTAAGGCGCGTGAGATT+AGG | 0.464192 | 1_3:+2866366 | None:intergenic |
TCCTGTTTCTGATCTTGGGA+TGG | 0.465939 | 1_3:-2865554 | Msa0097070:CDS |
TCCATCCCAAGATCAGAAAC+AGG | 0.475671 | 1_3:+2865553 | None:intergenic |
AGTGAAGGTCAAGAAGTGTA+AGG | 0.477496 | 1_3:-2865497 | Msa0097070:CDS |
CGCCGCGCTCGAGGAATTGT+CGG | 0.479472 | 1_3:-2866214 | Msa0097070:CDS |
AAGCCAATCTCTCTAGATTC+GGG | 0.481744 | 1_3:+2865665 | None:intergenic |
TTGATGGATGGAAGGCAAAT+CGG | 0.482279 | 1_3:-2865801 | Msa0097070:CDS |
TTTCCAAACTCACTCTCGTT+GGG | 0.487824 | 1_3:+2865704 | None:intergenic |
GATGGTGGAGCACAAGAGAA+TGG | 0.489500 | 1_3:-2865373 | Msa0097070:CDS |
CGGTGACCGTGGAAGCTGCT+TGG | 0.490935 | 1_3:+2866811 | None:intergenic |
GCGGCCACACCCGGTCCAAT+CGG | 0.492352 | 1_3:+2866150 | None:intergenic |
TTACACCTGAAGGCGGGGAT+TGG | 0.492516 | 1_3:-2865471 | Msa0097070:CDS |
GGTGGCTGAGCCGATTGGAC+CGG | 0.494009 | 1_3:-2866160 | Msa0097070:CDS |
AAAGGTTAGGGCTACTGTCC+GGG | 0.502510 | 1_3:-2865261 | Msa0097070:CDS |
CAAGCAGCTTCCACGGTCAC+CGG | 0.502543 | 1_3:-2866810 | Msa0097070:CDS |
ACACCTGAGTGTACTGATAT+GGG | 0.505583 | 1_3:-2865871 | Msa0097070:CDS |
ATTGAATTTCCTTCAATGCC+CGG | 0.508171 | 1_3:-2865349 | Msa0097070:CDS |
ACCAACCGCCGGGAAAGTGC+AGG | 0.508208 | 1_3:-2866786 | Msa0097070:CDS |
GATCGAGTTCATTCAAGCAA+AGG | 0.510836 | 1_3:-2865279 | Msa0097070:CDS |
ATTTCCAAACTCACTCTCGT+TGG | 0.512369 | 1_3:+2865703 | None:intergenic |
CTGAAGGCGGGGATTGGTTG+AGG | 0.513919 | 1_3:-2865465 | Msa0097070:CDS |
GCAGCAATGCAAGATATCTC+AGG | 0.514016 | 1_3:+2865616 | None:intergenic |
ATTGTCGGTGAAGCGGCTTA+GGG | 0.516744 | 1_3:-2866199 | Msa0097070:CDS |
GAGAGTGAGTTTGGAAATGT+TGG | 0.516798 | 1_3:-2865698 | Msa0097070:CDS |
CGGCTCCGCGGCATCTACAT+CGG | 0.517144 | 1_3:-2865329 | Msa0097070:CDS |
AGCACTTTGAGAAGATGGTC+AGG | 0.520658 | 1_3:-2865223 | Msa0097070:CDS |
CTCTTGTCTCTAACCATGAC+GGG | 0.521217 | 1_3:+2865186 | None:intergenic |
CGGTCACCGGAACCAACCGC+CGG | 0.521564 | 1_3:-2866797 | Msa0097070:CDS |
AACCAACAGATCCACCGCCT+TGG | 0.526292 | 1_3:-2866748 | Msa0097070:CDS |
ATGGTGGAGCACAAGAGAAT+GGG | 0.527565 | 1_3:-2865372 | Msa0097070:CDS |
ACAATCGCTAAACATTCATC+AGG | 0.529545 | 1_3:+2866624 | None:intergenic |
ACTGCGGTGGCTGAGCCGAT+TGG | 0.531430 | 1_3:-2866165 | Msa0097070:CDS |
AACCAAGGCGGTGGATCTGT+TGG | 0.533705 | 1_3:+2866746 | None:intergenic |
AGGGTGTTACACCTGAAGGC+GGG | 0.535285 | 1_3:-2865477 | Msa0097070:CDS |
GGTGACGGTAACGACGGAAT+CGG | 0.538000 | 1_3:-2866672 | Msa0097070:CDS |
GATGGGCCAAGCAGCTTCCA+CGG | 0.538513 | 1_3:-2866817 | Msa0097070:CDS |
TCCTTCAATGCCCGGCTCCG+CGG | 0.540180 | 1_3:-2865341 | Msa0097070:CDS |
GGATGGAAGCTTTGGCACAT+GGG | 0.540954 | 1_3:-2865537 | Msa0097070:CDS |
GGATGGAAGGCAAATCGGAT+TGG | 0.542728 | 1_3:-2865796 | Msa0097070:CDS |
TGAAAATTGCGCCGCGCTCG+AGG | 0.548189 | 1_3:-2866223 | Msa0097070:CDS |
GTTCATTCAAGCAAAGGTTA+GGG | 0.551510 | 1_3:-2865273 | Msa0097070:CDS |
GTGGCTGAGCCGATTGGACC+GGG | 0.559010 | 1_3:-2866159 | Msa0097070:CDS |
CATCGGAGAAACCAAGGCGG+TGG | 0.561191 | 1_3:+2866737 | None:intergenic |
AACGACGCAGCGGCCACACC+CGG | 0.561295 | 1_3:+2866141 | None:intergenic |
TCAAATCGATTAAACAGAGA+AGG | 0.563215 | 1_3:+2866474 | None:intergenic |
CGTAGCTGTGAATCTGGACG+CGG | 0.571152 | 1_3:-2865428 | Msa0097070:CDS |
GGTCACCGGAACCAACCGCC+GGG | 0.573207 | 1_3:-2866796 | Msa0097070:CDS |
CTTCAACGTGAAGCCACCGC+CGG | 0.574094 | 1_3:+2866553 | None:intergenic |
GGATTGGTTGAGGCACACTA+GGG | 0.579593 | 1_3:-2865455 | Msa0097070:CDS |
CCGTAAGTTCGCGACACGCG+CGG | 0.579903 | 1_3:+2866343 | None:intergenic |
TGAGCCGATTGGACCGGGTG+TGG | 0.583172 | 1_3:-2866154 | Msa0097070:CDS |
CGCGTCCAGATTCACAGCTA+CGG | 0.591102 | 1_3:+2865429 | None:intergenic |
GCAGATCCGGTTGACGGTGA+CGG | 0.594512 | 1_3:-2866687 | Msa0097070:CDS |
TCGAGGAATTGTCGGTGAAG+CGG | 0.594693 | 1_3:-2866206 | Msa0097070:CDS |
CCGTCGTCTGTGGAGATCAT+CGG | 0.595495 | 1_3:+2866720 | None:intergenic |
AGTCGTTGAATCCCTCTGAT+CGG | 0.596436 | 1_3:-2866596 | Msa0097070:CDS |
CACCGACAATTCCTCGAGCG+CGG | 0.597818 | 1_3:+2866212 | None:intergenic |
GGAAGCTACATATTGATGGA+TGG | 0.598307 | 1_3:-2865813 | Msa0097070:CDS |
GCTACATATTGATGGATGGA+AGG | 0.601245 | 1_3:-2865809 | Msa0097070:CDS |
GCGGTTGGTTCCGGTGACCG+TGG | 0.602758 | 1_3:+2866800 | None:intergenic |
TGAACACTGATTCCGATCAG+AGG | 0.604053 | 1_3:+2866584 | None:intergenic |
TAGGGGAATTGCTGAGACTG+CGG | 0.604704 | 1_3:-2866181 | Msa0097070:CDS |
GTGAAGGTCAAGAAGTGTAA+GGG | 0.606922 | 1_3:-2865496 | Msa0097070:CDS |
TGTAAGGGTGTTACACCTGA+AGG | 0.607758 | 1_3:-2865481 | Msa0097070:CDS |
GCTCTTGTCTCTAACCATGA+CGG | 0.610454 | 1_3:+2865185 | None:intergenic |
GAACACTGATTCCGATCAGA+GGG | 0.612028 | 1_3:+2866585 | None:intergenic |
GATGCTAGTGCTAGTGATGG+TGG | 0.613432 | 1_3:-2865388 | Msa0097070:CDS |
TTGAAGGACAGAGTCGTCAA+CGG | 0.623455 | 1_3:-2866536 | Msa0097070:CDS |
TTGTCGGTGAAGCGGCTTAG+GGG | 0.627341 | 1_3:-2866198 | Msa0097070:CDS |
CAAATCGGATTGGCGATGAA+GGG | 0.628264 | 1_3:-2865786 | Msa0097070:CDS |
AACATCGTCACCGTCGTCTG+TGG | 0.629183 | 1_3:+2866710 | None:intergenic |
GGGTGTTACACCTGAAGGCG+GGG | 0.630505 | 1_3:-2865476 | Msa0097070:CDS |
TGGCGATGAAGGGTTAATTG+CGG | 0.631783 | 1_3:-2865776 | Msa0097070:CDS |
TCCCAATTTGGTGAAAGTGA+AGG | 0.632374 | 1_3:-2865512 | Msa0097070:CDS |
TTGTGTGCAAGTGATACTGT+TGG | 0.633448 | 1_3:-2865643 | Msa0097070:CDS |
AGTGTTCACTCGTTTGCCGG+CGG | 0.634069 | 1_3:-2866569 | Msa0097070:CDS |
GATGTTGCAGATCCGGTTGA+CGG | 0.647651 | 1_3:-2866693 | Msa0097070:CDS |
GGGAATTGCTGAGACTGCGG+TGG | 0.651918 | 1_3:-2866178 | Msa0097070:CDS |
GGAGATCATCGGAGAAACCA+AGG | 0.659542 | 1_3:+2866731 | None:intergenic |
ATTTGCCGATGTAGATGCCG+CGG | 0.660814 | 1_3:+2865324 | None:intergenic |
GGTAGCACTAGTGCCCGTCA+TGG | 0.661122 | 1_3:-2865199 | Msa0097070:CDS |
CCGATGATCTCCACAGACGA+CGG | 0.673550 | 1_3:-2866720 | Msa0097070:CDS |
CAAGATGCTAGTGCTAGTGA+TGG | 0.682263 | 1_3:-2865391 | Msa0097070:CDS |
GGTTTGAGGAAATTATCGTG+TGG | 0.686243 | 1_3:-2866285 | Msa0097070:CDS |
AGTGTCGAGTATGATTGTTG+AGG | 0.687601 | 1_3:-2865980 | Msa0097070:CDS |
AAGGGTGTTACACCTGAAGG+CGG | 0.687864 | 1_3:-2865478 | Msa0097070:CDS |
ACTGTCCGGGAGGAAAATTG+TGG | 0.692257 | 1_3:-2865248 | Msa0097070:CDS |
ACTTTGAGAAGATGGTCAGG+TGG | 0.698161 | 1_3:-2865220 | Msa0097070:CDS |
GTTGACGGTGACGGTAACGA+CGG | 0.702577 | 1_3:-2866678 | Msa0097070:CDS |
AATCGTCTTCAACGACGCAG+CGG | 0.706961 | 1_3:+2866131 | None:intergenic |
GGTTGCCTGCACTTTCCCGG+CGG | 0.709663 | 1_3:+2866781 | None:intergenic |
GGTTAGGGCTACTGTCCGGG+AGG | 0.714520 | 1_3:-2865258 | Msa0097070:CDS |
AGTCCCATATCAGTACACTC+AGG | 0.721622 | 1_3:+2865868 | None:intergenic |
TGGATCTAAAGGTATGAACG+CGG | 0.726086 | 1_3:-2866250 | Msa0097070:CDS |
GATCATCGGAGAAACCAAGG+CGG | 0.832722 | 1_3:+2866734 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGGTAGTTCTGATATATAAT+CGG | + | chr1_3:2865370-2865389 | None:intergenic | 25.0% |
! | TGTTTGAAGGAACTTTATAA+TGG | - | chr1_3:2865903-2865922 | Msa0097070:CDS | 25.0% |
! | TATTTCGAATTGTTCGAATT+TGG | - | chr1_3:2866097-2866116 | Msa0097070:CDS | 25.0% |
!!! | AGGTAGTTCTGATATATAAT+CGG | + | chr1_3:2865370-2865389 | None:intergenic | 25.0% |
! | TGTTTGAAGGAACTTTATAA+TGG | - | chr1_3:2865903-2865922 | Msa0097070:CDS | 25.0% |
! | TATTTCGAATTGTTCGAATT+TGG | - | chr1_3:2866097-2866116 | Msa0097070:CDS | 25.0% |
TTAAACAGAGAAGGAATTAC+CGG | + | chr1_3:2865531-2865550 | None:intergenic | 30.0% | |
TCAAATCGATTAAACAGAGA+AGG | + | chr1_3:2865540-2865559 | None:intergenic | 30.0% | |
! | AGCTTTTGCTAAGAATTGTA+AGG | - | chr1_3:2865704-2865723 | Msa0097070:CDS | 30.0% |
! | GCTTTTGCTAAGAATTGTAA+GGG | - | chr1_3:2865705-2865724 | Msa0097070:CDS | 30.0% |
! | TCTTGTACTTTTGGATCTAA+AGG | - | chr1_3:2865750-2865769 | Msa0097070:CDS | 30.0% |
!!! | CTTTATAATGGACAGTGTTT+TGG | - | chr1_3:2865915-2865934 | Msa0097070:CDS | 30.0% |
!!! | TGTTTTGGTTCGTTGATTTT+AGG | - | chr1_3:2865930-2865949 | Msa0097070:CDS | 30.0% |
CTGAAAGATGTAAGTTGTTA+AGG | - | chr1_3:2866177-2866196 | Msa0097070:CDS | 30.0% | |
TTAAGGAAGCTACATATTGA+TGG | - | chr1_3:2866194-2866213 | Msa0097070:CDS | 30.0% | |
TTAAACAGAGAAGGAATTAC+CGG | + | chr1_3:2865531-2865550 | None:intergenic | 30.0% | |
TCAAATCGATTAAACAGAGA+AGG | + | chr1_3:2865540-2865559 | None:intergenic | 30.0% | |
! | AGCTTTTGCTAAGAATTGTA+AGG | - | chr1_3:2865704-2865723 | Msa0097070:CDS | 30.0% |
! | GCTTTTGCTAAGAATTGTAA+GGG | - | chr1_3:2865705-2865724 | Msa0097070:CDS | 30.0% |
! | TCTTGTACTTTTGGATCTAA+AGG | - | chr1_3:2865750-2865769 | Msa0097070:CDS | 30.0% |
!!! | CTTTATAATGGACAGTGTTT+TGG | - | chr1_3:2865915-2865934 | Msa0097070:CDS | 30.0% |
!!! | TGTTTTGGTTCGTTGATTTT+AGG | - | chr1_3:2865930-2865949 | Msa0097070:CDS | 30.0% |
CTGAAAGATGTAAGTTGTTA+AGG | - | chr1_3:2866177-2866196 | Msa0097070:CDS | 30.0% | |
TTAAGGAAGCTACATATTGA+TGG | - | chr1_3:2866194-2866213 | Msa0097070:CDS | 30.0% | |
!!! | ATCTGTTGGTTTTGGTAGAT+CGG | + | chr1_3:2865254-2865273 | None:intergenic | 35.0% |
ACAATCGCTAAACATTCATC+AGG | + | chr1_3:2865390-2865409 | None:intergenic | 35.0% | |
CTAAGAATTGTAAGGGTTTG+AGG | - | chr1_3:2865712-2865731 | Msa0097070:CDS | 35.0% | |
! | GTTGAAGACGATTTGTTTGA+AGG | - | chr1_3:2865890-2865909 | Msa0097070:CDS | 35.0% |
! | TTGAAGCTATTTCGATGTTC+CGG | - | chr1_3:2865972-2865991 | Msa0097070:CDS | 35.0% |
!! | GGATACGCTTTTTACACTTA+TGG | - | chr1_3:2866001-2866020 | Msa0097070:CDS | 35.0% |
! | TTGTTGAGGTTCATTTTGAG+AGG | - | chr1_3:2866045-2866064 | Msa0097070:CDS | 35.0% |
AGGCTTCAGATTAGTGATAT+TGG | - | chr1_3:2866065-2866084 | Msa0097070:CDS | 35.0% | |
! | TTGCCCTAATTTGCAAGAAT+TGG | - | chr1_3:2866268-2866287 | Msa0097070:CDS | 35.0% |
GCACCAATTCTTGCAAATTA+GGG | + | chr1_3:2866274-2866293 | None:intergenic | 35.0% | |
AGCACCAATTCTTGCAAATT+AGG | + | chr1_3:2866275-2866294 | None:intergenic | 35.0% | |
! | TTGCAAGAATTGGTGCTTAT+TGG | - | chr1_3:2866278-2866297 | Msa0097070:CDS | 35.0% |
AAAGCCAATCTCTCTAGATT+CGG | + | chr1_3:2866350-2866369 | None:intergenic | 35.0% | |
ACCTTCACTTTCACCAAATT+GGG | + | chr1_3:2866503-2866522 | None:intergenic | 35.0% | |
ATTGAATTTCCTTCAATGCC+CGG | - | chr1_3:2866662-2866681 | Msa0097070:CDS | 35.0% | |
AGTTCATTCAAGCAAAGGTT+AGG | - | chr1_3:2866737-2866756 | Msa0097070:CDS | 35.0% | |
GTTCATTCAAGCAAAGGTTA+GGG | - | chr1_3:2866738-2866757 | Msa0097070:CDS | 35.0% | |
!!! | ATCTGTTGGTTTTGGTAGAT+CGG | + | chr1_3:2865254-2865273 | None:intergenic | 35.0% |
ACAATCGCTAAACATTCATC+AGG | + | chr1_3:2865390-2865409 | None:intergenic | 35.0% | |
CTAAGAATTGTAAGGGTTTG+AGG | - | chr1_3:2865712-2865731 | Msa0097070:CDS | 35.0% | |
! | GTTGAAGACGATTTGTTTGA+AGG | - | chr1_3:2865890-2865909 | Msa0097070:CDS | 35.0% |
! | TTGAAGCTATTTCGATGTTC+CGG | - | chr1_3:2865972-2865991 | Msa0097070:CDS | 35.0% |
!! | GGATACGCTTTTTACACTTA+TGG | - | chr1_3:2866001-2866020 | Msa0097070:CDS | 35.0% |
! | TTGTTGAGGTTCATTTTGAG+AGG | - | chr1_3:2866045-2866064 | Msa0097070:CDS | 35.0% |
AGGCTTCAGATTAGTGATAT+TGG | - | chr1_3:2866065-2866084 | Msa0097070:CDS | 35.0% | |
! | TTGCCCTAATTTGCAAGAAT+TGG | - | chr1_3:2866268-2866287 | Msa0097070:CDS | 35.0% |
GCACCAATTCTTGCAAATTA+GGG | + | chr1_3:2866274-2866293 | None:intergenic | 35.0% | |
AGCACCAATTCTTGCAAATT+AGG | + | chr1_3:2866275-2866294 | None:intergenic | 35.0% | |
! | TTGCAAGAATTGGTGCTTAT+TGG | - | chr1_3:2866278-2866297 | Msa0097070:CDS | 35.0% |
AAAGCCAATCTCTCTAGATT+CGG | + | chr1_3:2866350-2866369 | None:intergenic | 35.0% | |
ACCTTCACTTTCACCAAATT+GGG | + | chr1_3:2866503-2866522 | None:intergenic | 35.0% | |
ATTGAATTTCCTTCAATGCC+CGG | - | chr1_3:2866662-2866681 | Msa0097070:CDS | 35.0% | |
AGTTCATTCAAGCAAAGGTT+AGG | - | chr1_3:2866737-2866756 | Msa0097070:CDS | 35.0% | |
GTTCATTCAAGCAAAGGTTA+GGG | - | chr1_3:2866738-2866757 | Msa0097070:CDS | 35.0% | |
GGTTTGAGGAAATTATCGTG+TGG | - | chr1_3:2865726-2865745 | Msa0097070:CDS | 40.0% | |
! | TCGTGTGGATCTTGTACTTT+TGG | - | chr1_3:2865741-2865760 | Msa0097070:CDS | 40.0% |
! | TGGATCTAAAGGTATGAACG+CGG | - | chr1_3:2865761-2865780 | Msa0097070:CDS | 40.0% |
TATTTCGATGTTCCGGTGAT+TGG | - | chr1_3:2865979-2865998 | Msa0097070:CDS | 40.0% | |
ATTTCGATGTTCCGGTGATT+GGG | - | chr1_3:2865980-2865999 | Msa0097070:CDS | 40.0% | |
! | AAAAAGCGTATCCCAATCAC+CGG | + | chr1_3:2865994-2866013 | None:intergenic | 40.0% |
! | AGTGTCGAGTATGATTGTTG+AGG | - | chr1_3:2866031-2866050 | Msa0097070:CDS | 40.0% |
! | ACACCTGAGTGTACTGATAT+GGG | - | chr1_3:2866140-2866159 | Msa0097070:CDS | 40.0% |
GGAAGCTACATATTGATGGA+TGG | - | chr1_3:2866198-2866217 | Msa0097070:CDS | 40.0% | |
! | GCTACATATTGATGGATGGA+AGG | - | chr1_3:2866202-2866221 | Msa0097070:CDS | 40.0% |
! | TTGATGGATGGAAGGCAAAT+CGG | - | chr1_3:2866210-2866229 | Msa0097070:CDS | 40.0% |
TTTCCAAACTCACTCTCGTT+GGG | + | chr1_3:2866310-2866329 | None:intergenic | 40.0% | |
ATTTCCAAACTCACTCTCGT+TGG | + | chr1_3:2866311-2866330 | None:intergenic | 40.0% | |
GAGAGTGAGTTTGGAAATGT+TGG | - | chr1_3:2866313-2866332 | Msa0097070:CDS | 40.0% | |
AAGCCAATCTCTCTAGATTC+GGG | + | chr1_3:2866349-2866368 | None:intergenic | 40.0% | |
TTGTGTGCAAGTGATACTGT+TGG | - | chr1_3:2866368-2866387 | Msa0097070:CDS | 40.0% | |
! | TTGCATTGCTGCAAAGTGTT+TGG | - | chr1_3:2866406-2866425 | Msa0097070:CDS | 40.0% |
!! | AGTTGTCCTGTTTCTGATCT+TGG | - | chr1_3:2866452-2866471 | Msa0097070:CDS | 40.0% |
!! | GTTGTCCTGTTTCTGATCTT+GGG | - | chr1_3:2866453-2866472 | Msa0097070:CDS | 40.0% |
! | TCCCAATTTGGTGAAAGTGA+AGG | - | chr1_3:2866499-2866518 | Msa0097070:CDS | 40.0% |
GACCTTCACTTTCACCAAAT+TGG | + | chr1_3:2866504-2866523 | None:intergenic | 40.0% | |
! | AGTGAAGGTCAAGAAGTGTA+AGG | - | chr1_3:2866514-2866533 | Msa0097070:CDS | 40.0% |
! | GTGAAGGTCAAGAAGTGTAA+GGG | - | chr1_3:2866515-2866534 | Msa0097070:CDS | 40.0% |
GATCGAGTTCATTCAAGCAA+AGG | - | chr1_3:2866732-2866751 | Msa0097070:CDS | 40.0% | |
GGTTTGAGGAAATTATCGTG+TGG | - | chr1_3:2865726-2865745 | Msa0097070:CDS | 40.0% | |
! | TCGTGTGGATCTTGTACTTT+TGG | - | chr1_3:2865741-2865760 | Msa0097070:CDS | 40.0% |
! | TGGATCTAAAGGTATGAACG+CGG | - | chr1_3:2865761-2865780 | Msa0097070:CDS | 40.0% |
TATTTCGATGTTCCGGTGAT+TGG | - | chr1_3:2865979-2865998 | Msa0097070:CDS | 40.0% | |
ATTTCGATGTTCCGGTGATT+GGG | - | chr1_3:2865980-2865999 | Msa0097070:CDS | 40.0% | |
! | AAAAAGCGTATCCCAATCAC+CGG | + | chr1_3:2865994-2866013 | None:intergenic | 40.0% |
! | AGTGTCGAGTATGATTGTTG+AGG | - | chr1_3:2866031-2866050 | Msa0097070:CDS | 40.0% |
! | ACACCTGAGTGTACTGATAT+GGG | - | chr1_3:2866140-2866159 | Msa0097070:CDS | 40.0% |
GGAAGCTACATATTGATGGA+TGG | - | chr1_3:2866198-2866217 | Msa0097070:CDS | 40.0% | |
! | GCTACATATTGATGGATGGA+AGG | - | chr1_3:2866202-2866221 | Msa0097070:CDS | 40.0% |
! | TTGATGGATGGAAGGCAAAT+CGG | - | chr1_3:2866210-2866229 | Msa0097070:CDS | 40.0% |
TTTCCAAACTCACTCTCGTT+GGG | + | chr1_3:2866310-2866329 | None:intergenic | 40.0% | |
ATTTCCAAACTCACTCTCGT+TGG | + | chr1_3:2866311-2866330 | None:intergenic | 40.0% | |
GAGAGTGAGTTTGGAAATGT+TGG | - | chr1_3:2866313-2866332 | Msa0097070:CDS | 40.0% | |
AAGCCAATCTCTCTAGATTC+GGG | + | chr1_3:2866349-2866368 | None:intergenic | 40.0% | |
TTGTGTGCAAGTGATACTGT+TGG | - | chr1_3:2866368-2866387 | Msa0097070:CDS | 40.0% | |
! | TTGCATTGCTGCAAAGTGTT+TGG | - | chr1_3:2866406-2866425 | Msa0097070:CDS | 40.0% |
!! | AGTTGTCCTGTTTCTGATCT+TGG | - | chr1_3:2866452-2866471 | Msa0097070:CDS | 40.0% |
!! | GTTGTCCTGTTTCTGATCTT+GGG | - | chr1_3:2866453-2866472 | Msa0097070:CDS | 40.0% |
! | TCCCAATTTGGTGAAAGTGA+AGG | - | chr1_3:2866499-2866518 | Msa0097070:CDS | 40.0% |
GACCTTCACTTTCACCAAAT+TGG | + | chr1_3:2866504-2866523 | None:intergenic | 40.0% | |
! | AGTGAAGGTCAAGAAGTGTA+AGG | - | chr1_3:2866514-2866533 | Msa0097070:CDS | 40.0% |
! | GTGAAGGTCAAGAAGTGTAA+GGG | - | chr1_3:2866515-2866534 | Msa0097070:CDS | 40.0% |
GATCGAGTTCATTCAAGCAA+AGG | - | chr1_3:2866732-2866751 | Msa0097070:CDS | 40.0% | |
AGTCGTTGAATCCCTCTGAT+CGG | - | chr1_3:2865415-2865434 | Msa0097070:CDS | 45.0% | |
!! | GAACACTGATTCCGATCAGA+GGG | + | chr1_3:2865429-2865448 | None:intergenic | 45.0% |
!! | TGAACACTGATTCCGATCAG+AGG | + | chr1_3:2865430-2865449 | None:intergenic | 45.0% |
ATCAGTGTTCACTCGTTTGC+CGG | - | chr1_3:2865439-2865458 | Msa0097070:CDS | 45.0% | |
TTGAAGGACAGAGTCGTCAA+CGG | - | chr1_3:2865475-2865494 | Msa0097070:CDS | 45.0% | |
CGCGAAGTTTGATCTTCTTC+CGG | - | chr1_3:2865509-2865528 | Msa0097070:CDS | 45.0% | |
! | GACACCTGAGTGTACTGATA+TGG | - | chr1_3:2866139-2866158 | Msa0097070:CDS | 45.0% |
AGTCCCATATCAGTACACTC+AGG | + | chr1_3:2866146-2866165 | None:intergenic | 45.0% | |
!! | CAAATCGGATTGGCGATGAA+GGG | - | chr1_3:2866225-2866244 | Msa0097070:CDS | 45.0% |
TGGCGATGAAGGGTTAATTG+CGG | - | chr1_3:2866235-2866254 | Msa0097070:CDS | 45.0% | |
TAACCCAACGAGAGTGAGTT+TGG | - | chr1_3:2866304-2866323 | Msa0097070:CDS | 45.0% | |
TTGCCCGAATCTAGAGAGAT+TGG | - | chr1_3:2866343-2866362 | Msa0097070:CDS | 45.0% | |
GCAGCAATGCAAGATATCTC+AGG | + | chr1_3:2866398-2866417 | None:intergenic | 45.0% | |
!! | TCCTGTTTCTGATCTTGGGA+TGG | - | chr1_3:2866457-2866476 | Msa0097070:CDS | 45.0% |
TCCATCCCAAGATCAGAAAC+AGG | + | chr1_3:2866461-2866480 | None:intergenic | 45.0% | |
TGATCTTGGGATGGAAGCTT+TGG | - | chr1_3:2866466-2866485 | Msa0097070:CDS | 45.0% | |
!! | TGTAAGGGTGTTACACCTGA+AGG | - | chr1_3:2866530-2866549 | Msa0097070:CDS | 45.0% |
CAAGATGCTAGTGCTAGTGA+TGG | - | chr1_3:2866620-2866639 | Msa0097070:CDS | 45.0% | |
! | ATGGTGGAGCACAAGAGAAT+GGG | - | chr1_3:2866639-2866658 | Msa0097070:CDS | 45.0% |
! | TGGCTAGCACTTTGAGAAGA+TGG | - | chr1_3:2866783-2866802 | Msa0097070:CDS | 45.0% |
! | AGCACTTTGAGAAGATGGTC+AGG | - | chr1_3:2866788-2866807 | Msa0097070:CDS | 45.0% |
! | ACTTTGAGAAGATGGTCAGG+TGG | - | chr1_3:2866791-2866810 | Msa0097070:CDS | 45.0% |
AGTCGTTGAATCCCTCTGAT+CGG | - | chr1_3:2865415-2865434 | Msa0097070:CDS | 45.0% | |
!! | GAACACTGATTCCGATCAGA+GGG | + | chr1_3:2865429-2865448 | None:intergenic | 45.0% |
!! | TGAACACTGATTCCGATCAG+AGG | + | chr1_3:2865430-2865449 | None:intergenic | 45.0% |
ATCAGTGTTCACTCGTTTGC+CGG | - | chr1_3:2865439-2865458 | Msa0097070:CDS | 45.0% | |
TTGAAGGACAGAGTCGTCAA+CGG | - | chr1_3:2865475-2865494 | Msa0097070:CDS | 45.0% | |
CGCGAAGTTTGATCTTCTTC+CGG | - | chr1_3:2865509-2865528 | Msa0097070:CDS | 45.0% | |
! | GACACCTGAGTGTACTGATA+TGG | - | chr1_3:2866139-2866158 | Msa0097070:CDS | 45.0% |
AGTCCCATATCAGTACACTC+AGG | + | chr1_3:2866146-2866165 | None:intergenic | 45.0% | |
!! | CAAATCGGATTGGCGATGAA+GGG | - | chr1_3:2866225-2866244 | Msa0097070:CDS | 45.0% |
TGGCGATGAAGGGTTAATTG+CGG | - | chr1_3:2866235-2866254 | Msa0097070:CDS | 45.0% | |
TAACCCAACGAGAGTGAGTT+TGG | - | chr1_3:2866304-2866323 | Msa0097070:CDS | 45.0% | |
TTGCCCGAATCTAGAGAGAT+TGG | - | chr1_3:2866343-2866362 | Msa0097070:CDS | 45.0% | |
GCAGCAATGCAAGATATCTC+AGG | + | chr1_3:2866398-2866417 | None:intergenic | 45.0% | |
!! | TCCTGTTTCTGATCTTGGGA+TGG | - | chr1_3:2866457-2866476 | Msa0097070:CDS | 45.0% |
TCCATCCCAAGATCAGAAAC+AGG | + | chr1_3:2866461-2866480 | None:intergenic | 45.0% | |
TGATCTTGGGATGGAAGCTT+TGG | - | chr1_3:2866466-2866485 | Msa0097070:CDS | 45.0% | |
!! | TGTAAGGGTGTTACACCTGA+AGG | - | chr1_3:2866530-2866549 | Msa0097070:CDS | 45.0% |
CAAGATGCTAGTGCTAGTGA+TGG | - | chr1_3:2866620-2866639 | Msa0097070:CDS | 45.0% | |
! | ATGGTGGAGCACAAGAGAAT+GGG | - | chr1_3:2866639-2866658 | Msa0097070:CDS | 45.0% |
! | TGGCTAGCACTTTGAGAAGA+TGG | - | chr1_3:2866783-2866802 | Msa0097070:CDS | 45.0% |
! | AGCACTTTGAGAAGATGGTC+AGG | - | chr1_3:2866788-2866807 | Msa0097070:CDS | 45.0% |
! | ACTTTGAGAAGATGGTCAGG+TGG | - | chr1_3:2866791-2866810 | Msa0097070:CDS | 45.0% |
GATCATCGGAGAAACCAAGG+CGG | + | chr1_3:2865280-2865299 | None:intergenic | 50.0% | |
GGAGATCATCGGAGAAACCA+AGG | + | chr1_3:2865283-2865302 | None:intergenic | 50.0% | |
GATGTTGCAGATCCGGTTGA+CGG | - | chr1_3:2865318-2865337 | Msa0097070:CDS | 50.0% | |
AGCTTAAGGCGCGTGAGATT+AGG | + | chr1_3:2865648-2865667 | None:intergenic | 50.0% | |
CGAACTTACGGATGCTGGAA+TGG | - | chr1_3:2865680-2865699 | Msa0097070:CDS | 50.0% | |
TCGAGGAATTGTCGGTGAAG+CGG | - | chr1_3:2865805-2865824 | Msa0097070:CDS | 50.0% | |
AATTGTCGGTGAAGCGGCTT+AGG | - | chr1_3:2865811-2865830 | Msa0097070:CDS | 50.0% | |
ATTGTCGGTGAAGCGGCTTA+GGG | - | chr1_3:2865812-2865831 | Msa0097070:CDS | 50.0% | |
TAGGGGAATTGCTGAGACTG+CGG | - | chr1_3:2865830-2865849 | Msa0097070:CDS | 50.0% | |
AATCGTCTTCAACGACGCAG+CGG | + | chr1_3:2865883-2865902 | None:intergenic | 50.0% | |
GGATGGAAGGCAAATCGGAT+TGG | - | chr1_3:2866215-2866234 | Msa0097070:CDS | 50.0% | |
!! | GCAAATCGGATTGGCGATGA+AGG | - | chr1_3:2866224-2866243 | Msa0097070:CDS | 50.0% |
! | GGATGGAAGCTTTGGCACAT+GGG | - | chr1_3:2866474-2866493 | Msa0097070:CDS | 50.0% |
!! | AAGGGTGTTACACCTGAAGG+CGG | - | chr1_3:2866533-2866552 | Msa0097070:CDS | 50.0% |
!! | GGATTGGTTGAGGCACACTA+GGG | - | chr1_3:2866556-2866575 | Msa0097070:CDS | 50.0% |
GGTTTCCGTAGCTGTGAATC+TGG | - | chr1_3:2866577-2866596 | Msa0097070:CDS | 50.0% | |
GATGCTAGTGCTAGTGATGG+TGG | - | chr1_3:2866623-2866642 | Msa0097070:CDS | 50.0% | |
!! | GATGGTGGAGCACAAGAGAA+TGG | - | chr1_3:2866638-2866657 | Msa0097070:CDS | 50.0% |
ATTTGCCGATGTAGATGCCG+CGG | + | chr1_3:2866690-2866709 | None:intergenic | 50.0% | |
CAAAGGTTAGGGCTACTGTC+CGG | - | chr1_3:2866749-2866768 | Msa0097070:CDS | 50.0% | |
AAAGGTTAGGGCTACTGTCC+GGG | - | chr1_3:2866750-2866769 | Msa0097070:CDS | 50.0% | |
ACTGTCCGGGAGGAAAATTG+TGG | - | chr1_3:2866763-2866782 | Msa0097070:CDS | 50.0% | |
! | GCTAGCCACAATTTTCCTCC+CGG | + | chr1_3:2866771-2866790 | None:intergenic | 50.0% |
GATCATCGGAGAAACCAAGG+CGG | + | chr1_3:2865280-2865299 | None:intergenic | 50.0% | |
GGAGATCATCGGAGAAACCA+AGG | + | chr1_3:2865283-2865302 | None:intergenic | 50.0% | |
GATGTTGCAGATCCGGTTGA+CGG | - | chr1_3:2865318-2865337 | Msa0097070:CDS | 50.0% | |
AGCTTAAGGCGCGTGAGATT+AGG | + | chr1_3:2865648-2865667 | None:intergenic | 50.0% | |
CGAACTTACGGATGCTGGAA+TGG | - | chr1_3:2865680-2865699 | Msa0097070:CDS | 50.0% | |
TCGAGGAATTGTCGGTGAAG+CGG | - | chr1_3:2865805-2865824 | Msa0097070:CDS | 50.0% | |
AATTGTCGGTGAAGCGGCTT+AGG | - | chr1_3:2865811-2865830 | Msa0097070:CDS | 50.0% | |
ATTGTCGGTGAAGCGGCTTA+GGG | - | chr1_3:2865812-2865831 | Msa0097070:CDS | 50.0% | |
TAGGGGAATTGCTGAGACTG+CGG | - | chr1_3:2865830-2865849 | Msa0097070:CDS | 50.0% | |
AATCGTCTTCAACGACGCAG+CGG | + | chr1_3:2865883-2865902 | None:intergenic | 50.0% | |
GGATGGAAGGCAAATCGGAT+TGG | - | chr1_3:2866215-2866234 | Msa0097070:CDS | 50.0% | |
!! | GCAAATCGGATTGGCGATGA+AGG | - | chr1_3:2866224-2866243 | Msa0097070:CDS | 50.0% |
! | GGATGGAAGCTTTGGCACAT+GGG | - | chr1_3:2866474-2866493 | Msa0097070:CDS | 50.0% |
!! | AAGGGTGTTACACCTGAAGG+CGG | - | chr1_3:2866533-2866552 | Msa0097070:CDS | 50.0% |
!! | GGATTGGTTGAGGCACACTA+GGG | - | chr1_3:2866556-2866575 | Msa0097070:CDS | 50.0% |
GGTTTCCGTAGCTGTGAATC+TGG | - | chr1_3:2866577-2866596 | Msa0097070:CDS | 50.0% | |
GATGCTAGTGCTAGTGATGG+TGG | - | chr1_3:2866623-2866642 | Msa0097070:CDS | 50.0% | |
!! | GATGGTGGAGCACAAGAGAA+TGG | - | chr1_3:2866638-2866657 | Msa0097070:CDS | 50.0% |
ATTTGCCGATGTAGATGCCG+CGG | + | chr1_3:2866690-2866709 | None:intergenic | 50.0% | |
CAAAGGTTAGGGCTACTGTC+CGG | - | chr1_3:2866749-2866768 | Msa0097070:CDS | 50.0% | |
AAAGGTTAGGGCTACTGTCC+GGG | - | chr1_3:2866750-2866769 | Msa0097070:CDS | 50.0% | |
ACTGTCCGGGAGGAAAATTG+TGG | - | chr1_3:2866763-2866782 | Msa0097070:CDS | 50.0% | |
! | GCTAGCCACAATTTTCCTCC+CGG | + | chr1_3:2866771-2866790 | None:intergenic | 50.0% |
ATCGGTTGCCTGCACTTTCC+CGG | + | chr1_3:2865236-2865255 | None:intergenic | 55.0% | |
!!! | GGCGGTGGATCTGTTGGTTT+TGG | + | chr1_3:2865262-2865281 | None:intergenic | 55.0% |
AACCAACAGATCCACCGCCT+TGG | - | chr1_3:2865263-2865282 | Msa0097070:CDS | 55.0% | |
AACCAAGGCGGTGGATCTGT+TGG | + | chr1_3:2865268-2865287 | None:intergenic | 55.0% | |
CCGTCGTCTGTGGAGATCAT+CGG | + | chr1_3:2865294-2865313 | None:intergenic | 55.0% | |
CCGATGATCTCCACAGACGA+CGG | - | chr1_3:2865291-2865310 | Msa0097070:CDS | 55.0% | |
AACATCGTCACCGTCGTCTG+TGG | + | chr1_3:2865304-2865323 | None:intergenic | 55.0% | |
CGGTGACGATGTTGCAGATC+CGG | - | chr1_3:2865311-2865330 | Msa0097070:CDS | 55.0% | |
TCGTTACCGTCACCGTCAAC+CGG | + | chr1_3:2865333-2865352 | None:intergenic | 55.0% | |
! | GTTGACGGTGACGGTAACGA+CGG | - | chr1_3:2865333-2865352 | Msa0097070:CDS | 55.0% |
! | GGTGACGGTAACGACGGAAT+CGG | - | chr1_3:2865339-2865358 | Msa0097070:CDS | 55.0% |
AGTGTTCACTCGTTTGCCGG+CGG | - | chr1_3:2865442-2865461 | Msa0097070:CDS | 55.0% | |
TGTCGCGAACTTACGGATGC+TGG | - | chr1_3:2865675-2865694 | Msa0097070:CDS | 55.0% | |
TTGTCGGTGAAGCGGCTTAG+GGG | - | chr1_3:2865813-2865832 | Msa0097070:CDS | 55.0% | |
! | GGGATGGAAGCTTTGGCACA+TGG | - | chr1_3:2866473-2866492 | Msa0097070:CDS | 55.0% |
GGCACATGGGTGTCCCAATT+TGG | - | chr1_3:2866487-2866506 | Msa0097070:CDS | 55.0% | |
! | AGGGTGTTACACCTGAAGGC+GGG | - | chr1_3:2866534-2866553 | Msa0097070:CDS | 55.0% |
TTACACCTGAAGGCGGGGAT+TGG | - | chr1_3:2866540-2866559 | Msa0097070:CDS | 55.0% | |
!! | GGGATTGGTTGAGGCACACT+AGG | - | chr1_3:2866555-2866574 | Msa0097070:CDS | 55.0% |
CGCGTCCAGATTCACAGCTA+CGG | + | chr1_3:2866585-2866604 | None:intergenic | 55.0% | |
CGTAGCTGTGAATCTGGACG+CGG | - | chr1_3:2866583-2866602 | Msa0097070:CDS | 55.0% | |
ATCGGTTGCCTGCACTTTCC+CGG | + | chr1_3:2865236-2865255 | None:intergenic | 55.0% | |
!!! | GGCGGTGGATCTGTTGGTTT+TGG | + | chr1_3:2865262-2865281 | None:intergenic | 55.0% |
AACCAACAGATCCACCGCCT+TGG | - | chr1_3:2865263-2865282 | Msa0097070:CDS | 55.0% | |
AACCAAGGCGGTGGATCTGT+TGG | + | chr1_3:2865268-2865287 | None:intergenic | 55.0% | |
CCGTCGTCTGTGGAGATCAT+CGG | + | chr1_3:2865294-2865313 | None:intergenic | 55.0% | |
CCGATGATCTCCACAGACGA+CGG | - | chr1_3:2865291-2865310 | Msa0097070:CDS | 55.0% | |
AACATCGTCACCGTCGTCTG+TGG | + | chr1_3:2865304-2865323 | None:intergenic | 55.0% | |
CGGTGACGATGTTGCAGATC+CGG | - | chr1_3:2865311-2865330 | Msa0097070:CDS | 55.0% | |
TCGTTACCGTCACCGTCAAC+CGG | + | chr1_3:2865333-2865352 | None:intergenic | 55.0% | |
! | GTTGACGGTGACGGTAACGA+CGG | - | chr1_3:2865333-2865352 | Msa0097070:CDS | 55.0% |
! | GGTGACGGTAACGACGGAAT+CGG | - | chr1_3:2865339-2865358 | Msa0097070:CDS | 55.0% |
AGTGTTCACTCGTTTGCCGG+CGG | - | chr1_3:2865442-2865461 | Msa0097070:CDS | 55.0% | |
TGTCGCGAACTTACGGATGC+TGG | - | chr1_3:2865675-2865694 | Msa0097070:CDS | 55.0% | |
TTGTCGGTGAAGCGGCTTAG+GGG | - | chr1_3:2865813-2865832 | Msa0097070:CDS | 55.0% | |
! | GGGATGGAAGCTTTGGCACA+TGG | - | chr1_3:2866473-2866492 | Msa0097070:CDS | 55.0% |
GGCACATGGGTGTCCCAATT+TGG | - | chr1_3:2866487-2866506 | Msa0097070:CDS | 55.0% | |
! | AGGGTGTTACACCTGAAGGC+GGG | - | chr1_3:2866534-2866553 | Msa0097070:CDS | 55.0% |
TTACACCTGAAGGCGGGGAT+TGG | - | chr1_3:2866540-2866559 | Msa0097070:CDS | 55.0% | |
!! | GGGATTGGTTGAGGCACACT+AGG | - | chr1_3:2866555-2866574 | Msa0097070:CDS | 55.0% |
CGCGTCCAGATTCACAGCTA+CGG | + | chr1_3:2866585-2866604 | None:intergenic | 55.0% | |
CGTAGCTGTGAATCTGGACG+CGG | - | chr1_3:2866583-2866602 | Msa0097070:CDS | 55.0% | |
CAAGCAGCTTCCACGGTCAC+CGG | - | chr1_3:2865201-2865220 | Msa0097070:CDS | 60.0% | |
! | ACTTTCCCGGCGGTTGGTTC+CGG | + | chr1_3:2865223-2865242 | None:intergenic | 60.0% |
CATCGGAGAAACCAAGGCGG+TGG | + | chr1_3:2865277-2865296 | None:intergenic | 60.0% | |
GCAGATCCGGTTGACGGTGA+CGG | - | chr1_3:2865324-2865343 | Msa0097070:CDS | 60.0% | |
CTTCAACGTGAAGCCACCGC+CGG | + | chr1_3:2865461-2865480 | None:intergenic | 60.0% | |
TGAAAATTGCGCCGCGCTCG+AGG | - | chr1_3:2865788-2865807 | Msa0097070:CDS | 60.0% | |
CACCGACAATTCCTCGAGCG+CGG | + | chr1_3:2865802-2865821 | None:intergenic | 60.0% | |
GGGAATTGCTGAGACTGCGG+TGG | - | chr1_3:2865833-2865852 | Msa0097070:CDS | 60.0% | |
! | GGGTGTTACACCTGAAGGCG+GGG | - | chr1_3:2866535-2866554 | Msa0097070:CDS | 60.0% |
CTCAACCAATCCCCGCCTTC+AGG | + | chr1_3:2866548-2866567 | None:intergenic | 60.0% | |
!! | CTGAAGGCGGGGATTGGTTG+AGG | - | chr1_3:2866546-2866565 | Msa0097070:CDS | 60.0% |
GGTAGCACTAGTGCCCGTCA+TGG | - | chr1_3:2866812-2866831 | Msa0097070:CDS | 60.0% | |
CAAGCAGCTTCCACGGTCAC+CGG | - | chr1_3:2865201-2865220 | Msa0097070:CDS | 60.0% | |
! | ACTTTCCCGGCGGTTGGTTC+CGG | + | chr1_3:2865223-2865242 | None:intergenic | 60.0% |
CATCGGAGAAACCAAGGCGG+TGG | + | chr1_3:2865277-2865296 | None:intergenic | 60.0% | |
GCAGATCCGGTTGACGGTGA+CGG | - | chr1_3:2865324-2865343 | Msa0097070:CDS | 60.0% | |
CTTCAACGTGAAGCCACCGC+CGG | + | chr1_3:2865461-2865480 | None:intergenic | 60.0% | |
TGAAAATTGCGCCGCGCTCG+AGG | - | chr1_3:2865788-2865807 | Msa0097070:CDS | 60.0% | |
CACCGACAATTCCTCGAGCG+CGG | + | chr1_3:2865802-2865821 | None:intergenic | 60.0% | |
GGGAATTGCTGAGACTGCGG+TGG | - | chr1_3:2865833-2865852 | Msa0097070:CDS | 60.0% | |
! | GGGTGTTACACCTGAAGGCG+GGG | - | chr1_3:2866535-2866554 | Msa0097070:CDS | 60.0% |
CTCAACCAATCCCCGCCTTC+AGG | + | chr1_3:2866548-2866567 | None:intergenic | 60.0% | |
!! | CTGAAGGCGGGGATTGGTTG+AGG | - | chr1_3:2866546-2866565 | Msa0097070:CDS | 60.0% |
GGTAGCACTAGTGCCCGTCA+TGG | - | chr1_3:2866812-2866831 | Msa0097070:CDS | 60.0% | |
CGGTGACCGTGGAAGCTGCT+TGG | + | chr1_3:2865203-2865222 | None:intergenic | 65.0% | |
! | ACCAACCGCCGGGAAAGTGC+AGG | - | chr1_3:2865225-2865244 | Msa0097070:CDS | 65.0% |
GGTTGCCTGCACTTTCCCGG+CGG | + | chr1_3:2865233-2865252 | None:intergenic | 65.0% | |
GTTCACTCGTTTGCCGGCGG+TGG | - | chr1_3:2865445-2865464 | Msa0097070:CDS | 65.0% | |
CGGCGGTGGCTTCACGTTGA+AGG | - | chr1_3:2865459-2865478 | Msa0097070:CDS | 65.0% | |
CCGTAAGTTCGCGACACGCG+CGG | + | chr1_3:2865671-2865690 | None:intergenic | 65.0% | |
CCGCGCGTGTCGCGAACTTA+CGG | - | chr1_3:2865668-2865687 | Msa0097070:CDS | 65.0% | |
CGCCGCGCTCGAGGAATTGT+CGG | - | chr1_3:2865797-2865816 | Msa0097070:CDS | 65.0% | |
ACTGCGGTGGCTGAGCCGAT+TGG | - | chr1_3:2865846-2865865 | Msa0097070:CDS | 65.0% | |
GGTGGCTGAGCCGATTGGAC+CGG | - | chr1_3:2865851-2865870 | Msa0097070:CDS | 65.0% | |
GTGGCTGAGCCGATTGGACC+GGG | - | chr1_3:2865852-2865871 | Msa0097070:CDS | 65.0% | |
TGAGCCGATTGGACCGGGTG+TGG | - | chr1_3:2865857-2865876 | Msa0097070:CDS | 65.0% | |
TCCTTCAATGCCCGGCTCCG+CGG | - | chr1_3:2866670-2866689 | Msa0097070:CDS | 65.0% | |
GATGTAGATGCCGCGGAGCC+GGG | + | chr1_3:2866683-2866702 | None:intergenic | 65.0% | |
CGATGTAGATGCCGCGGAGC+CGG | + | chr1_3:2866684-2866703 | None:intergenic | 65.0% | |
CGGCTCCGCGGCATCTACAT+CGG | - | chr1_3:2866682-2866701 | Msa0097070:CDS | 65.0% | |
GGTTAGGGCTACTGTCCGGG+AGG | - | chr1_3:2866753-2866772 | Msa0097070:CDS | 65.0% | |
CGGTGACCGTGGAAGCTGCT+TGG | + | chr1_3:2865203-2865222 | None:intergenic | 65.0% | |
! | ACCAACCGCCGGGAAAGTGC+AGG | - | chr1_3:2865225-2865244 | Msa0097070:CDS | 65.0% |
GGTTGCCTGCACTTTCCCGG+CGG | + | chr1_3:2865233-2865252 | None:intergenic | 65.0% | |
GTTCACTCGTTTGCCGGCGG+TGG | - | chr1_3:2865445-2865464 | Msa0097070:CDS | 65.0% | |
CGGCGGTGGCTTCACGTTGA+AGG | - | chr1_3:2865459-2865478 | Msa0097070:CDS | 65.0% | |
CCGTAAGTTCGCGACACGCG+CGG | + | chr1_3:2865671-2865690 | None:intergenic | 65.0% | |
CCGCGCGTGTCGCGAACTTA+CGG | - | chr1_3:2865668-2865687 | Msa0097070:CDS | 65.0% | |
CGCCGCGCTCGAGGAATTGT+CGG | - | chr1_3:2865797-2865816 | Msa0097070:CDS | 65.0% | |
ACTGCGGTGGCTGAGCCGAT+TGG | - | chr1_3:2865846-2865865 | Msa0097070:CDS | 65.0% | |
GGTGGCTGAGCCGATTGGAC+CGG | - | chr1_3:2865851-2865870 | Msa0097070:CDS | 65.0% | |
GTGGCTGAGCCGATTGGACC+GGG | - | chr1_3:2865852-2865871 | Msa0097070:CDS | 65.0% | |
TGAGCCGATTGGACCGGGTG+TGG | - | chr1_3:2865857-2865876 | Msa0097070:CDS | 65.0% | |
TCCTTCAATGCCCGGCTCCG+CGG | - | chr1_3:2866670-2866689 | Msa0097070:CDS | 65.0% | |
GATGTAGATGCCGCGGAGCC+GGG | + | chr1_3:2866683-2866702 | None:intergenic | 65.0% | |
CGATGTAGATGCCGCGGAGC+CGG | + | chr1_3:2866684-2866703 | None:intergenic | 65.0% | |
CGGCTCCGCGGCATCTACAT+CGG | - | chr1_3:2866682-2866701 | Msa0097070:CDS | 65.0% | |
GGTTAGGGCTACTGTCCGGG+AGG | - | chr1_3:2866753-2866772 | Msa0097070:CDS | 65.0% | |
! | GCGGTTGGTTCCGGTGACCG+TGG | + | chr1_3:2865214-2865233 | None:intergenic | 70.0% |
CGGTCACCGGAACCAACCGC+CGG | - | chr1_3:2865214-2865233 | Msa0097070:CDS | 70.0% | |
GGTCACCGGAACCAACCGCC+GGG | - | chr1_3:2865215-2865234 | Msa0097070:CDS | 70.0% | |
GCCTGCACTTTCCCGGCGGT+TGG | + | chr1_3:2865229-2865248 | None:intergenic | 70.0% | |
CGCGACACGCGCGGAGCTTA+AGG | + | chr1_3:2865662-2865681 | None:intergenic | 70.0% | |
GCGGCCACACCCGGTCCAAT+CGG | + | chr1_3:2865864-2865883 | None:intergenic | 70.0% | |
AACGACGCAGCGGCCACACC+CGG | + | chr1_3:2865873-2865892 | None:intergenic | 70.0% | |
! | GCGGTTGGTTCCGGTGACCG+TGG | + | chr1_3:2865214-2865233 | None:intergenic | 70.0% |
CGGTCACCGGAACCAACCGC+CGG | - | chr1_3:2865214-2865233 | Msa0097070:CDS | 70.0% | |
GGTCACCGGAACCAACCGCC+GGG | - | chr1_3:2865215-2865234 | Msa0097070:CDS | 70.0% | |
GCCTGCACTTTCCCGGCGGT+TGG | + | chr1_3:2865229-2865248 | None:intergenic | 70.0% | |
CGCGACACGCGCGGAGCTTA+AGG | + | chr1_3:2865662-2865681 | None:intergenic | 70.0% | |
GCGGCCACACCCGGTCCAAT+CGG | + | chr1_3:2865864-2865883 | None:intergenic | 70.0% | |
AACGACGCAGCGGCCACACC+CGG | + | chr1_3:2865873-2865892 | None:intergenic | 70.0% | |
!! | GCCGCGGAGCCGGGCATTGA+AGG | + | chr1_3:2866674-2866693 | None:intergenic | 75.0% |
!! | GCCGCGGAGCCGGGCATTGA+AGG | + | chr1_3:2866674-2866693 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 2865195 | 2866838 | 2865195 | ID=Msa0097070;Name=Msa0097070 |
chr1_3 | mRNA | 2865195 | 2866838 | 2865195 | ID=Msa0097070-mRNA-1;Parent=Msa0097070;Name=Msa0097070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|547 |
chr1_3 | exon | 2865195 | 2866838 | 2865195 | ID=Msa0097070-mRNA-1:exon:785;Parent=Msa0097070-mRNA-1 |
chr1_3 | CDS | 2865195 | 2866838 | 2865195 | ID=Msa0097070-mRNA-1:cds;Parent=Msa0097070-mRNA-1 |
Gene Sequence |
Protein sequence |