AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097070 MtrunA17_Chr1g0152951 98.720 547 7 0 1 547 1 547 0.0 1095
Msa0097070 MtrunA17_Chr4g0053361 54.472 492 218 3 52 538 34 524 0.0 538
Msa0097070 MtrunA17_Chr2g0286991 28.541 466 251 16 59 449 5 463 1.76e-29 122
Msa0097070 MtrunA17_Chr2g0286991 26.171 363 224 12 98 453 245 570 1.49e-17 85.9
Msa0097070 MtrunA17_Chr4g0048391 23.061 490 246 18 57 443 19 480 2.12e-17 85.5
Msa0097070 MtrunA17_Chr7g0251831 24.390 492 259 17 61 446 1 485 5.88e-16 80.9
Msa0097070 MtrunA17_Chr1g0196061 21.756 501 256 17 64 446 14 496 1.66e-15 79.7
Msa0097070 MtrunA17_Chr1g0212071 24.471 425 230 13 66 455 23 391 4.63e-15 77.4
Msa0097070 MtrunA17_Chr4g0004901 26.923 260 181 6 187 443 365 618 5.54e-15 78.2
Msa0097070 MtrunA17_Chr4g0004901 29.600 250 168 6 134 381 389 632 6.16e-15 78.2
Msa0097070 MtrunA17_Chr4g0004901 26.265 415 227 13 103 450 146 548 1.25e-11 67.4
Msa0097070 MtrunA17_Chr8g0347711 25.272 368 218 13 61 383 12 367 3.53e-14 74.3
Msa0097070 MtrunA17_Chr4g0041191 24.520 469 247 16 54 470 3 416 6.12e-14 74.7
Msa0097070 MtrunA17_Chr1g0149351 24.012 329 206 12 134 450 224 520 7.19e-14 74.3
Msa0097070 MtrunA17_Chr1g0149351 30.370 135 66 3 320 453 177 284 9.13e-12 67.8
Msa0097070 MtrunA17_Chr3g0137771 37.143 140 82 4 320 453 143 282 7.11e-13 71.2
Msa0097070 MtrunA17_Chr3g0137771 22.179 514 259 15 61 434 68 580 1.34e-11 67.4
Msa0097070 MtrunA17_Chr3g0137771 30.052 193 98 7 294 453 200 388 3.48e-11 65.9
Msa0097070 MtrunA17_Chr1g0176031 27.668 253 159 9 120 361 77 316 1.06e-12 69.7
Msa0097070 MtrunA17_Chr7g0272131 26.149 348 215 13 138 453 197 534 3.01e-12 69.3
Msa0097070 MtrunA17_Chr4g0000931 28.179 291 158 11 64 341 40 292 9.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097070 AT1G47056.1 66.116 484 158 4 55 536 34 513 0.0 626
Msa0097070 AT4G07400.1 61.154 520 185 6 14 531 35 539 0.0 605
Msa0097070 AT5G67250.1 55.985 543 209 6 1 538 1 518 0.0 552
Msa0097070 AT3G50080.1 56.790 486 200 6 56 538 36 514 0.0 530
Msa0097070 AT4G15475.1 29.394 330 211 13 127 447 274 590 6.21e-23 103
Msa0097070 AT4G15475.1 27.696 408 243 12 51 453 3 363 3.65e-22 100
Msa0097070 AT2G25490.1 26.107 429 273 16 61 453 64 484 4.91e-17 85.1
Msa0097070 AT2G25490.1 25.000 360 203 9 134 432 212 565 3.66e-14 75.9
Msa0097070 AT5G27920.1 27.019 359 213 13 137 459 158 503 7.71e-16 81.3
Msa0097070 AT5G27920.1 26.087 299 148 9 158 446 332 567 1.61e-11 67.4
Msa0097070 AT1G12820.1 24.590 427 252 13 61 443 1 401 9.96e-15 77.4
Msa0097070 AT5G01720.1 28.516 256 165 6 134 382 338 582 5.25e-14 75.5
Msa0097070 AT5G01720.1 23.780 492 264 17 64 452 16 499 4.54e-12 69.3
Msa0097070 AT5G23340.1 25.740 338 181 13 64 365 10 313 1.82e-13 72.8
Msa0097070 AT1G80570.2 23.448 435 267 15 55 453 8 412 2.50e-13 72.8
Msa0097070 AT3G26810.1 24.700 417 262 16 61 443 1 399 2.54e-13 73.2
Msa0097070 AT3G07550.1 24.451 364 217 14 61 377 15 367 5.18e-13 71.2
Msa0097070 AT3G07550.2 24.451 364 217 14 61 377 15 367 5.18e-13 71.2
Msa0097070 AT1G80570.1 24.242 429 259 17 61 453 1 399 8.72e-13 70.9
Msa0097070 AT1G80570.3 24.242 429 259 17 61 453 1 399 8.72e-13 70.9
Msa0097070 AT5G25350.1 32.653 196 89 7 294 453 180 368 4.81e-12 68.9
Msa0097070 AT4G03190.1 22.426 437 243 13 80 443 22 435 4.82e-11 65.9

Find 150 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCACCAATTCTTGCAAATT+AGG 0.147721 1_3:+2865739 None:intergenic
GACCTTCACTTTCACCAAAT+TGG 0.167556 1_3:+2865510 None:intergenic
TATTTCGAATTGTTCGAATT+TGG 0.247249 1_3:-2865914 Msa0097070:CDS
AGTTGTCCTGTTTCTGATCT+TGG 0.260446 1_3:-2865559 Msa0097070:CDS
AGGCTTCAGATTAGTGATAT+TGG 0.286479 1_3:-2865946 Msa0097070:CDS
TTGCAAGAATTGGTGCTTAT+TGG 0.291569 1_3:-2865733 Msa0097070:CDS
TCGTGTGGATCTTGTACTTT+TGG 0.297932 1_3:-2866270 Msa0097070:CDS
CTTTATAATGGACAGTGTTT+TGG 0.307331 1_3:-2866096 Msa0097070:CDS
ATCGGTTGCCTGCACTTTCC+CGG 0.307896 1_3:+2866778 None:intergenic
GACACCTGAGTGTACTGATA+TGG 0.308361 1_3:-2865872 Msa0097070:CDS
TGATCTTGGGATGGAAGCTT+TGG 0.309384 1_3:-2865545 Msa0097070:CDS
GCACCAATTCTTGCAAATTA+GGG 0.310819 1_3:+2865740 None:intergenic
GGCGGTGGATCTGTTGGTTT+TGG 0.323583 1_3:+2866752 None:intergenic
TTGCCCTAATTTGCAAGAAT+TGG 0.326430 1_3:-2865743 Msa0097070:CDS
CTGAAAGATGTAAGTTGTTA+AGG 0.328374 1_3:-2865834 Msa0097070:CDS
ACCTTCACTTTCACCAAATT+GGG 0.329278 1_3:+2865511 None:intergenic
GGCACATGGGTGTCCCAATT+TGG 0.331746 1_3:-2865524 Msa0097070:CDS
CTCAACCAATCCCCGCCTTC+AGG 0.338516 1_3:+2865466 None:intergenic
ATCAGTGTTCACTCGTTTGC+CGG 0.338793 1_3:-2866572 Msa0097070:CDS
TGTTTGAAGGAACTTTATAA+TGG 0.338946 1_3:-2866108 Msa0097070:CDS
TATTTCGATGTTCCGGTGAT+TGG 0.339573 1_3:-2866032 Msa0097070:CDS
CTAAGAATTGTAAGGGTTTG+AGG 0.347732 1_3:-2866299 Msa0097070:CDS
AATTGTCGGTGAAGCGGCTT+AGG 0.348422 1_3:-2866200 Msa0097070:CDS
GTTGTCCTGTTTCTGATCTT+GGG 0.350129 1_3:-2865558 Msa0097070:CDS
CGCGACACGCGCGGAGCTTA+AGG 0.354968 1_3:+2866352 None:intergenic
TTGCATTGCTGCAAAGTGTT+TGG 0.356470 1_3:-2865605 Msa0097070:CDS
CGCGAAGTTTGATCTTCTTC+CGG 0.356911 1_3:-2866502 Msa0097070:CDS
TTGAAGCTATTTCGATGTTC+CGG 0.378035 1_3:-2866039 Msa0097070:CDS
TAACCCAACGAGAGTGAGTT+TGG 0.378471 1_3:-2865707 Msa0097070:CDS
AGTTCATTCAAGCAAAGGTT+AGG 0.388373 1_3:-2865274 Msa0097070:CDS
AAAGCCAATCTCTCTAGATT+CGG 0.392075 1_3:+2865664 None:intergenic
GTTGAAGACGATTTGTTTGA+AGG 0.397116 1_3:-2866121 Msa0097070:CDS
TTAAGGAAGCTACATATTGA+TGG 0.408793 1_3:-2865817 Msa0097070:CDS
CGATGTAGATGCCGCGGAGC+CGG 0.410875 1_3:+2865330 None:intergenic
GCCGCGGAGCCGGGCATTGA+AGG 0.418437 1_3:+2865340 None:intergenic
ATTTCGATGTTCCGGTGATT+GGG 0.419025 1_3:-2866031 Msa0097070:CDS
GGTTTCCGTAGCTGTGAATC+TGG 0.427319 1_3:-2865434 Msa0097070:CDS
GGGATTGGTTGAGGCACACT+AGG 0.428246 1_3:-2865456 Msa0097070:CDS
ACTTTCCCGGCGGTTGGTTC+CGG 0.430973 1_3:+2866791 None:intergenic
CCGCGCGTGTCGCGAACTTA+CGG 0.432226 1_3:-2866343 Msa0097070:CDS
GATGTAGATGCCGCGGAGCC+GGG 0.436914 1_3:+2865331 None:intergenic
GCCTGCACTTTCCCGGCGGT+TGG 0.443897 1_3:+2866785 None:intergenic
GTTCACTCGTTTGCCGGCGG+TGG 0.448947 1_3:-2866566 Msa0097070:CDS
GGGATGGAAGCTTTGGCACA+TGG 0.450411 1_3:-2865538 Msa0097070:CDS
GCAAATCGGATTGGCGATGA+AGG 0.452211 1_3:-2865787 Msa0097070:CDS
TGGCTAGCACTTTGAGAAGA+TGG 0.454655 1_3:-2865228 Msa0097070:CDS
TTGCCCGAATCTAGAGAGAT+TGG 0.454730 1_3:-2865668 Msa0097070:CDS
TTAAACAGAGAAGGAATTAC+CGG 0.456733 1_3:+2866483 None:intergenic
CGGTGACGATGTTGCAGATC+CGG 0.458209 1_3:-2866700 Msa0097070:CDS
TCGTTACCGTCACCGTCAAC+CGG 0.458796 1_3:+2866681 None:intergenic
CGGCGGTGGCTTCACGTTGA+AGG 0.459312 1_3:-2866552 Msa0097070:CDS
TGTCGCGAACTTACGGATGC+TGG 0.459477 1_3:-2866336 Msa0097070:CDS
CGAACTTACGGATGCTGGAA+TGG 0.461081 1_3:-2866331 Msa0097070:CDS
CAAAGGTTAGGGCTACTGTC+CGG 0.463095 1_3:-2865262 Msa0097070:CDS
AGGTAGTTCTGATATATAAT+CGG 0.463807 1_3:+2866644 None:intergenic
AGCTTAAGGCGCGTGAGATT+AGG 0.464192 1_3:+2866366 None:intergenic
TCCTGTTTCTGATCTTGGGA+TGG 0.465939 1_3:-2865554 Msa0097070:CDS
TCCATCCCAAGATCAGAAAC+AGG 0.475671 1_3:+2865553 None:intergenic
AGTGAAGGTCAAGAAGTGTA+AGG 0.477496 1_3:-2865497 Msa0097070:CDS
CGCCGCGCTCGAGGAATTGT+CGG 0.479472 1_3:-2866214 Msa0097070:CDS
AAGCCAATCTCTCTAGATTC+GGG 0.481744 1_3:+2865665 None:intergenic
TTGATGGATGGAAGGCAAAT+CGG 0.482279 1_3:-2865801 Msa0097070:CDS
TTTCCAAACTCACTCTCGTT+GGG 0.487824 1_3:+2865704 None:intergenic
GATGGTGGAGCACAAGAGAA+TGG 0.489500 1_3:-2865373 Msa0097070:CDS
CGGTGACCGTGGAAGCTGCT+TGG 0.490935 1_3:+2866811 None:intergenic
GCGGCCACACCCGGTCCAAT+CGG 0.492352 1_3:+2866150 None:intergenic
TTACACCTGAAGGCGGGGAT+TGG 0.492516 1_3:-2865471 Msa0097070:CDS
GGTGGCTGAGCCGATTGGAC+CGG 0.494009 1_3:-2866160 Msa0097070:CDS
AAAGGTTAGGGCTACTGTCC+GGG 0.502510 1_3:-2865261 Msa0097070:CDS
CAAGCAGCTTCCACGGTCAC+CGG 0.502543 1_3:-2866810 Msa0097070:CDS
ACACCTGAGTGTACTGATAT+GGG 0.505583 1_3:-2865871 Msa0097070:CDS
ATTGAATTTCCTTCAATGCC+CGG 0.508171 1_3:-2865349 Msa0097070:CDS
ACCAACCGCCGGGAAAGTGC+AGG 0.508208 1_3:-2866786 Msa0097070:CDS
GATCGAGTTCATTCAAGCAA+AGG 0.510836 1_3:-2865279 Msa0097070:CDS
ATTTCCAAACTCACTCTCGT+TGG 0.512369 1_3:+2865703 None:intergenic
CTGAAGGCGGGGATTGGTTG+AGG 0.513919 1_3:-2865465 Msa0097070:CDS
GCAGCAATGCAAGATATCTC+AGG 0.514016 1_3:+2865616 None:intergenic
ATTGTCGGTGAAGCGGCTTA+GGG 0.516744 1_3:-2866199 Msa0097070:CDS
GAGAGTGAGTTTGGAAATGT+TGG 0.516798 1_3:-2865698 Msa0097070:CDS
CGGCTCCGCGGCATCTACAT+CGG 0.517144 1_3:-2865329 Msa0097070:CDS
AGCACTTTGAGAAGATGGTC+AGG 0.520658 1_3:-2865223 Msa0097070:CDS
CTCTTGTCTCTAACCATGAC+GGG 0.521217 1_3:+2865186 None:intergenic
CGGTCACCGGAACCAACCGC+CGG 0.521564 1_3:-2866797 Msa0097070:CDS
AACCAACAGATCCACCGCCT+TGG 0.526292 1_3:-2866748 Msa0097070:CDS
ATGGTGGAGCACAAGAGAAT+GGG 0.527565 1_3:-2865372 Msa0097070:CDS
ACAATCGCTAAACATTCATC+AGG 0.529545 1_3:+2866624 None:intergenic
ACTGCGGTGGCTGAGCCGAT+TGG 0.531430 1_3:-2866165 Msa0097070:CDS
AACCAAGGCGGTGGATCTGT+TGG 0.533705 1_3:+2866746 None:intergenic
AGGGTGTTACACCTGAAGGC+GGG 0.535285 1_3:-2865477 Msa0097070:CDS
GGTGACGGTAACGACGGAAT+CGG 0.538000 1_3:-2866672 Msa0097070:CDS
GATGGGCCAAGCAGCTTCCA+CGG 0.538513 1_3:-2866817 Msa0097070:CDS
TCCTTCAATGCCCGGCTCCG+CGG 0.540180 1_3:-2865341 Msa0097070:CDS
GGATGGAAGCTTTGGCACAT+GGG 0.540954 1_3:-2865537 Msa0097070:CDS
GGATGGAAGGCAAATCGGAT+TGG 0.542728 1_3:-2865796 Msa0097070:CDS
TGAAAATTGCGCCGCGCTCG+AGG 0.548189 1_3:-2866223 Msa0097070:CDS
GTTCATTCAAGCAAAGGTTA+GGG 0.551510 1_3:-2865273 Msa0097070:CDS
GTGGCTGAGCCGATTGGACC+GGG 0.559010 1_3:-2866159 Msa0097070:CDS
CATCGGAGAAACCAAGGCGG+TGG 0.561191 1_3:+2866737 None:intergenic
AACGACGCAGCGGCCACACC+CGG 0.561295 1_3:+2866141 None:intergenic
TCAAATCGATTAAACAGAGA+AGG 0.563215 1_3:+2866474 None:intergenic
CGTAGCTGTGAATCTGGACG+CGG 0.571152 1_3:-2865428 Msa0097070:CDS
GGTCACCGGAACCAACCGCC+GGG 0.573207 1_3:-2866796 Msa0097070:CDS
CTTCAACGTGAAGCCACCGC+CGG 0.574094 1_3:+2866553 None:intergenic
GGATTGGTTGAGGCACACTA+GGG 0.579593 1_3:-2865455 Msa0097070:CDS
CCGTAAGTTCGCGACACGCG+CGG 0.579903 1_3:+2866343 None:intergenic
TGAGCCGATTGGACCGGGTG+TGG 0.583172 1_3:-2866154 Msa0097070:CDS
CGCGTCCAGATTCACAGCTA+CGG 0.591102 1_3:+2865429 None:intergenic
GCAGATCCGGTTGACGGTGA+CGG 0.594512 1_3:-2866687 Msa0097070:CDS
TCGAGGAATTGTCGGTGAAG+CGG 0.594693 1_3:-2866206 Msa0097070:CDS
CCGTCGTCTGTGGAGATCAT+CGG 0.595495 1_3:+2866720 None:intergenic
AGTCGTTGAATCCCTCTGAT+CGG 0.596436 1_3:-2866596 Msa0097070:CDS
CACCGACAATTCCTCGAGCG+CGG 0.597818 1_3:+2866212 None:intergenic
GGAAGCTACATATTGATGGA+TGG 0.598307 1_3:-2865813 Msa0097070:CDS
GCTACATATTGATGGATGGA+AGG 0.601245 1_3:-2865809 Msa0097070:CDS
GCGGTTGGTTCCGGTGACCG+TGG 0.602758 1_3:+2866800 None:intergenic
TGAACACTGATTCCGATCAG+AGG 0.604053 1_3:+2866584 None:intergenic
TAGGGGAATTGCTGAGACTG+CGG 0.604704 1_3:-2866181 Msa0097070:CDS
GTGAAGGTCAAGAAGTGTAA+GGG 0.606922 1_3:-2865496 Msa0097070:CDS
TGTAAGGGTGTTACACCTGA+AGG 0.607758 1_3:-2865481 Msa0097070:CDS
GCTCTTGTCTCTAACCATGA+CGG 0.610454 1_3:+2865185 None:intergenic
GAACACTGATTCCGATCAGA+GGG 0.612028 1_3:+2866585 None:intergenic
GATGCTAGTGCTAGTGATGG+TGG 0.613432 1_3:-2865388 Msa0097070:CDS
TTGAAGGACAGAGTCGTCAA+CGG 0.623455 1_3:-2866536 Msa0097070:CDS
TTGTCGGTGAAGCGGCTTAG+GGG 0.627341 1_3:-2866198 Msa0097070:CDS
CAAATCGGATTGGCGATGAA+GGG 0.628264 1_3:-2865786 Msa0097070:CDS
AACATCGTCACCGTCGTCTG+TGG 0.629183 1_3:+2866710 None:intergenic
GGGTGTTACACCTGAAGGCG+GGG 0.630505 1_3:-2865476 Msa0097070:CDS
TGGCGATGAAGGGTTAATTG+CGG 0.631783 1_3:-2865776 Msa0097070:CDS
TCCCAATTTGGTGAAAGTGA+AGG 0.632374 1_3:-2865512 Msa0097070:CDS
TTGTGTGCAAGTGATACTGT+TGG 0.633448 1_3:-2865643 Msa0097070:CDS
AGTGTTCACTCGTTTGCCGG+CGG 0.634069 1_3:-2866569 Msa0097070:CDS
GATGTTGCAGATCCGGTTGA+CGG 0.647651 1_3:-2866693 Msa0097070:CDS
GGGAATTGCTGAGACTGCGG+TGG 0.651918 1_3:-2866178 Msa0097070:CDS
GGAGATCATCGGAGAAACCA+AGG 0.659542 1_3:+2866731 None:intergenic
ATTTGCCGATGTAGATGCCG+CGG 0.660814 1_3:+2865324 None:intergenic
GGTAGCACTAGTGCCCGTCA+TGG 0.661122 1_3:-2865199 Msa0097070:CDS
CCGATGATCTCCACAGACGA+CGG 0.673550 1_3:-2866720 Msa0097070:CDS
CAAGATGCTAGTGCTAGTGA+TGG 0.682263 1_3:-2865391 Msa0097070:CDS
GGTTTGAGGAAATTATCGTG+TGG 0.686243 1_3:-2866285 Msa0097070:CDS
AGTGTCGAGTATGATTGTTG+AGG 0.687601 1_3:-2865980 Msa0097070:CDS
AAGGGTGTTACACCTGAAGG+CGG 0.687864 1_3:-2865478 Msa0097070:CDS
ACTGTCCGGGAGGAAAATTG+TGG 0.692257 1_3:-2865248 Msa0097070:CDS
ACTTTGAGAAGATGGTCAGG+TGG 0.698161 1_3:-2865220 Msa0097070:CDS
GTTGACGGTGACGGTAACGA+CGG 0.702577 1_3:-2866678 Msa0097070:CDS
AATCGTCTTCAACGACGCAG+CGG 0.706961 1_3:+2866131 None:intergenic
GGTTGCCTGCACTTTCCCGG+CGG 0.709663 1_3:+2866781 None:intergenic
GGTTAGGGCTACTGTCCGGG+AGG 0.714520 1_3:-2865258 Msa0097070:CDS
AGTCCCATATCAGTACACTC+AGG 0.721622 1_3:+2865868 None:intergenic
TGGATCTAAAGGTATGAACG+CGG 0.726086 1_3:-2866250 Msa0097070:CDS
GATCATCGGAGAAACCAAGG+CGG 0.832722 1_3:+2866734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGTAGTTCTGATATATAAT+CGG + chr1_3:2865370-2865389 None:intergenic 25.0%
! TGTTTGAAGGAACTTTATAA+TGG - chr1_3:2865903-2865922 Msa0097070:CDS 25.0%
! TATTTCGAATTGTTCGAATT+TGG - chr1_3:2866097-2866116 Msa0097070:CDS 25.0%
!!! AGGTAGTTCTGATATATAAT+CGG + chr1_3:2865370-2865389 None:intergenic 25.0%
! TGTTTGAAGGAACTTTATAA+TGG - chr1_3:2865903-2865922 Msa0097070:CDS 25.0%
! TATTTCGAATTGTTCGAATT+TGG - chr1_3:2866097-2866116 Msa0097070:CDS 25.0%
TTAAACAGAGAAGGAATTAC+CGG + chr1_3:2865531-2865550 None:intergenic 30.0%
TCAAATCGATTAAACAGAGA+AGG + chr1_3:2865540-2865559 None:intergenic 30.0%
! AGCTTTTGCTAAGAATTGTA+AGG - chr1_3:2865704-2865723 Msa0097070:CDS 30.0%
! GCTTTTGCTAAGAATTGTAA+GGG - chr1_3:2865705-2865724 Msa0097070:CDS 30.0%
! TCTTGTACTTTTGGATCTAA+AGG - chr1_3:2865750-2865769 Msa0097070:CDS 30.0%
!!! CTTTATAATGGACAGTGTTT+TGG - chr1_3:2865915-2865934 Msa0097070:CDS 30.0%
!!! TGTTTTGGTTCGTTGATTTT+AGG - chr1_3:2865930-2865949 Msa0097070:CDS 30.0%
CTGAAAGATGTAAGTTGTTA+AGG - chr1_3:2866177-2866196 Msa0097070:CDS 30.0%
TTAAGGAAGCTACATATTGA+TGG - chr1_3:2866194-2866213 Msa0097070:CDS 30.0%
TTAAACAGAGAAGGAATTAC+CGG + chr1_3:2865531-2865550 None:intergenic 30.0%
TCAAATCGATTAAACAGAGA+AGG + chr1_3:2865540-2865559 None:intergenic 30.0%
! AGCTTTTGCTAAGAATTGTA+AGG - chr1_3:2865704-2865723 Msa0097070:CDS 30.0%
! GCTTTTGCTAAGAATTGTAA+GGG - chr1_3:2865705-2865724 Msa0097070:CDS 30.0%
! TCTTGTACTTTTGGATCTAA+AGG - chr1_3:2865750-2865769 Msa0097070:CDS 30.0%
!!! CTTTATAATGGACAGTGTTT+TGG - chr1_3:2865915-2865934 Msa0097070:CDS 30.0%
!!! TGTTTTGGTTCGTTGATTTT+AGG - chr1_3:2865930-2865949 Msa0097070:CDS 30.0%
CTGAAAGATGTAAGTTGTTA+AGG - chr1_3:2866177-2866196 Msa0097070:CDS 30.0%
TTAAGGAAGCTACATATTGA+TGG - chr1_3:2866194-2866213 Msa0097070:CDS 30.0%
!!! ATCTGTTGGTTTTGGTAGAT+CGG + chr1_3:2865254-2865273 None:intergenic 35.0%
ACAATCGCTAAACATTCATC+AGG + chr1_3:2865390-2865409 None:intergenic 35.0%
CTAAGAATTGTAAGGGTTTG+AGG - chr1_3:2865712-2865731 Msa0097070:CDS 35.0%
! GTTGAAGACGATTTGTTTGA+AGG - chr1_3:2865890-2865909 Msa0097070:CDS 35.0%
! TTGAAGCTATTTCGATGTTC+CGG - chr1_3:2865972-2865991 Msa0097070:CDS 35.0%
!! GGATACGCTTTTTACACTTA+TGG - chr1_3:2866001-2866020 Msa0097070:CDS 35.0%
! TTGTTGAGGTTCATTTTGAG+AGG - chr1_3:2866045-2866064 Msa0097070:CDS 35.0%
AGGCTTCAGATTAGTGATAT+TGG - chr1_3:2866065-2866084 Msa0097070:CDS 35.0%
! TTGCCCTAATTTGCAAGAAT+TGG - chr1_3:2866268-2866287 Msa0097070:CDS 35.0%
GCACCAATTCTTGCAAATTA+GGG + chr1_3:2866274-2866293 None:intergenic 35.0%
AGCACCAATTCTTGCAAATT+AGG + chr1_3:2866275-2866294 None:intergenic 35.0%
! TTGCAAGAATTGGTGCTTAT+TGG - chr1_3:2866278-2866297 Msa0097070:CDS 35.0%
AAAGCCAATCTCTCTAGATT+CGG + chr1_3:2866350-2866369 None:intergenic 35.0%
ACCTTCACTTTCACCAAATT+GGG + chr1_3:2866503-2866522 None:intergenic 35.0%
ATTGAATTTCCTTCAATGCC+CGG - chr1_3:2866662-2866681 Msa0097070:CDS 35.0%
AGTTCATTCAAGCAAAGGTT+AGG - chr1_3:2866737-2866756 Msa0097070:CDS 35.0%
GTTCATTCAAGCAAAGGTTA+GGG - chr1_3:2866738-2866757 Msa0097070:CDS 35.0%
!!! ATCTGTTGGTTTTGGTAGAT+CGG + chr1_3:2865254-2865273 None:intergenic 35.0%
ACAATCGCTAAACATTCATC+AGG + chr1_3:2865390-2865409 None:intergenic 35.0%
CTAAGAATTGTAAGGGTTTG+AGG - chr1_3:2865712-2865731 Msa0097070:CDS 35.0%
! GTTGAAGACGATTTGTTTGA+AGG - chr1_3:2865890-2865909 Msa0097070:CDS 35.0%
! TTGAAGCTATTTCGATGTTC+CGG - chr1_3:2865972-2865991 Msa0097070:CDS 35.0%
!! GGATACGCTTTTTACACTTA+TGG - chr1_3:2866001-2866020 Msa0097070:CDS 35.0%
! TTGTTGAGGTTCATTTTGAG+AGG - chr1_3:2866045-2866064 Msa0097070:CDS 35.0%
AGGCTTCAGATTAGTGATAT+TGG - chr1_3:2866065-2866084 Msa0097070:CDS 35.0%
! TTGCCCTAATTTGCAAGAAT+TGG - chr1_3:2866268-2866287 Msa0097070:CDS 35.0%
GCACCAATTCTTGCAAATTA+GGG + chr1_3:2866274-2866293 None:intergenic 35.0%
AGCACCAATTCTTGCAAATT+AGG + chr1_3:2866275-2866294 None:intergenic 35.0%
! TTGCAAGAATTGGTGCTTAT+TGG - chr1_3:2866278-2866297 Msa0097070:CDS 35.0%
AAAGCCAATCTCTCTAGATT+CGG + chr1_3:2866350-2866369 None:intergenic 35.0%
ACCTTCACTTTCACCAAATT+GGG + chr1_3:2866503-2866522 None:intergenic 35.0%
ATTGAATTTCCTTCAATGCC+CGG - chr1_3:2866662-2866681 Msa0097070:CDS 35.0%
AGTTCATTCAAGCAAAGGTT+AGG - chr1_3:2866737-2866756 Msa0097070:CDS 35.0%
GTTCATTCAAGCAAAGGTTA+GGG - chr1_3:2866738-2866757 Msa0097070:CDS 35.0%
GGTTTGAGGAAATTATCGTG+TGG - chr1_3:2865726-2865745 Msa0097070:CDS 40.0%
! TCGTGTGGATCTTGTACTTT+TGG - chr1_3:2865741-2865760 Msa0097070:CDS 40.0%
! TGGATCTAAAGGTATGAACG+CGG - chr1_3:2865761-2865780 Msa0097070:CDS 40.0%
TATTTCGATGTTCCGGTGAT+TGG - chr1_3:2865979-2865998 Msa0097070:CDS 40.0%
ATTTCGATGTTCCGGTGATT+GGG - chr1_3:2865980-2865999 Msa0097070:CDS 40.0%
! AAAAAGCGTATCCCAATCAC+CGG + chr1_3:2865994-2866013 None:intergenic 40.0%
! AGTGTCGAGTATGATTGTTG+AGG - chr1_3:2866031-2866050 Msa0097070:CDS 40.0%
! ACACCTGAGTGTACTGATAT+GGG - chr1_3:2866140-2866159 Msa0097070:CDS 40.0%
GGAAGCTACATATTGATGGA+TGG - chr1_3:2866198-2866217 Msa0097070:CDS 40.0%
! GCTACATATTGATGGATGGA+AGG - chr1_3:2866202-2866221 Msa0097070:CDS 40.0%
! TTGATGGATGGAAGGCAAAT+CGG - chr1_3:2866210-2866229 Msa0097070:CDS 40.0%
TTTCCAAACTCACTCTCGTT+GGG + chr1_3:2866310-2866329 None:intergenic 40.0%
ATTTCCAAACTCACTCTCGT+TGG + chr1_3:2866311-2866330 None:intergenic 40.0%
GAGAGTGAGTTTGGAAATGT+TGG - chr1_3:2866313-2866332 Msa0097070:CDS 40.0%
AAGCCAATCTCTCTAGATTC+GGG + chr1_3:2866349-2866368 None:intergenic 40.0%
TTGTGTGCAAGTGATACTGT+TGG - chr1_3:2866368-2866387 Msa0097070:CDS 40.0%
! TTGCATTGCTGCAAAGTGTT+TGG - chr1_3:2866406-2866425 Msa0097070:CDS 40.0%
!! AGTTGTCCTGTTTCTGATCT+TGG - chr1_3:2866452-2866471 Msa0097070:CDS 40.0%
!! GTTGTCCTGTTTCTGATCTT+GGG - chr1_3:2866453-2866472 Msa0097070:CDS 40.0%
! TCCCAATTTGGTGAAAGTGA+AGG - chr1_3:2866499-2866518 Msa0097070:CDS 40.0%
GACCTTCACTTTCACCAAAT+TGG + chr1_3:2866504-2866523 None:intergenic 40.0%
! AGTGAAGGTCAAGAAGTGTA+AGG - chr1_3:2866514-2866533 Msa0097070:CDS 40.0%
! GTGAAGGTCAAGAAGTGTAA+GGG - chr1_3:2866515-2866534 Msa0097070:CDS 40.0%
GATCGAGTTCATTCAAGCAA+AGG - chr1_3:2866732-2866751 Msa0097070:CDS 40.0%
GGTTTGAGGAAATTATCGTG+TGG - chr1_3:2865726-2865745 Msa0097070:CDS 40.0%
! TCGTGTGGATCTTGTACTTT+TGG - chr1_3:2865741-2865760 Msa0097070:CDS 40.0%
! TGGATCTAAAGGTATGAACG+CGG - chr1_3:2865761-2865780 Msa0097070:CDS 40.0%
TATTTCGATGTTCCGGTGAT+TGG - chr1_3:2865979-2865998 Msa0097070:CDS 40.0%
ATTTCGATGTTCCGGTGATT+GGG - chr1_3:2865980-2865999 Msa0097070:CDS 40.0%
! AAAAAGCGTATCCCAATCAC+CGG + chr1_3:2865994-2866013 None:intergenic 40.0%
! AGTGTCGAGTATGATTGTTG+AGG - chr1_3:2866031-2866050 Msa0097070:CDS 40.0%
! ACACCTGAGTGTACTGATAT+GGG - chr1_3:2866140-2866159 Msa0097070:CDS 40.0%
GGAAGCTACATATTGATGGA+TGG - chr1_3:2866198-2866217 Msa0097070:CDS 40.0%
! GCTACATATTGATGGATGGA+AGG - chr1_3:2866202-2866221 Msa0097070:CDS 40.0%
! TTGATGGATGGAAGGCAAAT+CGG - chr1_3:2866210-2866229 Msa0097070:CDS 40.0%
TTTCCAAACTCACTCTCGTT+GGG + chr1_3:2866310-2866329 None:intergenic 40.0%
ATTTCCAAACTCACTCTCGT+TGG + chr1_3:2866311-2866330 None:intergenic 40.0%
GAGAGTGAGTTTGGAAATGT+TGG - chr1_3:2866313-2866332 Msa0097070:CDS 40.0%
AAGCCAATCTCTCTAGATTC+GGG + chr1_3:2866349-2866368 None:intergenic 40.0%
TTGTGTGCAAGTGATACTGT+TGG - chr1_3:2866368-2866387 Msa0097070:CDS 40.0%
! TTGCATTGCTGCAAAGTGTT+TGG - chr1_3:2866406-2866425 Msa0097070:CDS 40.0%
!! AGTTGTCCTGTTTCTGATCT+TGG - chr1_3:2866452-2866471 Msa0097070:CDS 40.0%
!! GTTGTCCTGTTTCTGATCTT+GGG - chr1_3:2866453-2866472 Msa0097070:CDS 40.0%
! TCCCAATTTGGTGAAAGTGA+AGG - chr1_3:2866499-2866518 Msa0097070:CDS 40.0%
GACCTTCACTTTCACCAAAT+TGG + chr1_3:2866504-2866523 None:intergenic 40.0%
! AGTGAAGGTCAAGAAGTGTA+AGG - chr1_3:2866514-2866533 Msa0097070:CDS 40.0%
! GTGAAGGTCAAGAAGTGTAA+GGG - chr1_3:2866515-2866534 Msa0097070:CDS 40.0%
GATCGAGTTCATTCAAGCAA+AGG - chr1_3:2866732-2866751 Msa0097070:CDS 40.0%
AGTCGTTGAATCCCTCTGAT+CGG - chr1_3:2865415-2865434 Msa0097070:CDS 45.0%
!! GAACACTGATTCCGATCAGA+GGG + chr1_3:2865429-2865448 None:intergenic 45.0%
!! TGAACACTGATTCCGATCAG+AGG + chr1_3:2865430-2865449 None:intergenic 45.0%
ATCAGTGTTCACTCGTTTGC+CGG - chr1_3:2865439-2865458 Msa0097070:CDS 45.0%
TTGAAGGACAGAGTCGTCAA+CGG - chr1_3:2865475-2865494 Msa0097070:CDS 45.0%
CGCGAAGTTTGATCTTCTTC+CGG - chr1_3:2865509-2865528 Msa0097070:CDS 45.0%
! GACACCTGAGTGTACTGATA+TGG - chr1_3:2866139-2866158 Msa0097070:CDS 45.0%
AGTCCCATATCAGTACACTC+AGG + chr1_3:2866146-2866165 None:intergenic 45.0%
!! CAAATCGGATTGGCGATGAA+GGG - chr1_3:2866225-2866244 Msa0097070:CDS 45.0%
TGGCGATGAAGGGTTAATTG+CGG - chr1_3:2866235-2866254 Msa0097070:CDS 45.0%
TAACCCAACGAGAGTGAGTT+TGG - chr1_3:2866304-2866323 Msa0097070:CDS 45.0%
TTGCCCGAATCTAGAGAGAT+TGG - chr1_3:2866343-2866362 Msa0097070:CDS 45.0%
GCAGCAATGCAAGATATCTC+AGG + chr1_3:2866398-2866417 None:intergenic 45.0%
!! TCCTGTTTCTGATCTTGGGA+TGG - chr1_3:2866457-2866476 Msa0097070:CDS 45.0%
TCCATCCCAAGATCAGAAAC+AGG + chr1_3:2866461-2866480 None:intergenic 45.0%
TGATCTTGGGATGGAAGCTT+TGG - chr1_3:2866466-2866485 Msa0097070:CDS 45.0%
!! TGTAAGGGTGTTACACCTGA+AGG - chr1_3:2866530-2866549 Msa0097070:CDS 45.0%
CAAGATGCTAGTGCTAGTGA+TGG - chr1_3:2866620-2866639 Msa0097070:CDS 45.0%
! ATGGTGGAGCACAAGAGAAT+GGG - chr1_3:2866639-2866658 Msa0097070:CDS 45.0%
! TGGCTAGCACTTTGAGAAGA+TGG - chr1_3:2866783-2866802 Msa0097070:CDS 45.0%
! AGCACTTTGAGAAGATGGTC+AGG - chr1_3:2866788-2866807 Msa0097070:CDS 45.0%
! ACTTTGAGAAGATGGTCAGG+TGG - chr1_3:2866791-2866810 Msa0097070:CDS 45.0%
AGTCGTTGAATCCCTCTGAT+CGG - chr1_3:2865415-2865434 Msa0097070:CDS 45.0%
!! GAACACTGATTCCGATCAGA+GGG + chr1_3:2865429-2865448 None:intergenic 45.0%
!! TGAACACTGATTCCGATCAG+AGG + chr1_3:2865430-2865449 None:intergenic 45.0%
ATCAGTGTTCACTCGTTTGC+CGG - chr1_3:2865439-2865458 Msa0097070:CDS 45.0%
TTGAAGGACAGAGTCGTCAA+CGG - chr1_3:2865475-2865494 Msa0097070:CDS 45.0%
CGCGAAGTTTGATCTTCTTC+CGG - chr1_3:2865509-2865528 Msa0097070:CDS 45.0%
! GACACCTGAGTGTACTGATA+TGG - chr1_3:2866139-2866158 Msa0097070:CDS 45.0%
AGTCCCATATCAGTACACTC+AGG + chr1_3:2866146-2866165 None:intergenic 45.0%
!! CAAATCGGATTGGCGATGAA+GGG - chr1_3:2866225-2866244 Msa0097070:CDS 45.0%
TGGCGATGAAGGGTTAATTG+CGG - chr1_3:2866235-2866254 Msa0097070:CDS 45.0%
TAACCCAACGAGAGTGAGTT+TGG - chr1_3:2866304-2866323 Msa0097070:CDS 45.0%
TTGCCCGAATCTAGAGAGAT+TGG - chr1_3:2866343-2866362 Msa0097070:CDS 45.0%
GCAGCAATGCAAGATATCTC+AGG + chr1_3:2866398-2866417 None:intergenic 45.0%
!! TCCTGTTTCTGATCTTGGGA+TGG - chr1_3:2866457-2866476 Msa0097070:CDS 45.0%
TCCATCCCAAGATCAGAAAC+AGG + chr1_3:2866461-2866480 None:intergenic 45.0%
TGATCTTGGGATGGAAGCTT+TGG - chr1_3:2866466-2866485 Msa0097070:CDS 45.0%
!! TGTAAGGGTGTTACACCTGA+AGG - chr1_3:2866530-2866549 Msa0097070:CDS 45.0%
CAAGATGCTAGTGCTAGTGA+TGG - chr1_3:2866620-2866639 Msa0097070:CDS 45.0%
! ATGGTGGAGCACAAGAGAAT+GGG - chr1_3:2866639-2866658 Msa0097070:CDS 45.0%
! TGGCTAGCACTTTGAGAAGA+TGG - chr1_3:2866783-2866802 Msa0097070:CDS 45.0%
! AGCACTTTGAGAAGATGGTC+AGG - chr1_3:2866788-2866807 Msa0097070:CDS 45.0%
! ACTTTGAGAAGATGGTCAGG+TGG - chr1_3:2866791-2866810 Msa0097070:CDS 45.0%
GATCATCGGAGAAACCAAGG+CGG + chr1_3:2865280-2865299 None:intergenic 50.0%
GGAGATCATCGGAGAAACCA+AGG + chr1_3:2865283-2865302 None:intergenic 50.0%
GATGTTGCAGATCCGGTTGA+CGG - chr1_3:2865318-2865337 Msa0097070:CDS 50.0%
AGCTTAAGGCGCGTGAGATT+AGG + chr1_3:2865648-2865667 None:intergenic 50.0%
CGAACTTACGGATGCTGGAA+TGG - chr1_3:2865680-2865699 Msa0097070:CDS 50.0%
TCGAGGAATTGTCGGTGAAG+CGG - chr1_3:2865805-2865824 Msa0097070:CDS 50.0%
AATTGTCGGTGAAGCGGCTT+AGG - chr1_3:2865811-2865830 Msa0097070:CDS 50.0%
ATTGTCGGTGAAGCGGCTTA+GGG - chr1_3:2865812-2865831 Msa0097070:CDS 50.0%
TAGGGGAATTGCTGAGACTG+CGG - chr1_3:2865830-2865849 Msa0097070:CDS 50.0%
AATCGTCTTCAACGACGCAG+CGG + chr1_3:2865883-2865902 None:intergenic 50.0%
GGATGGAAGGCAAATCGGAT+TGG - chr1_3:2866215-2866234 Msa0097070:CDS 50.0%
!! GCAAATCGGATTGGCGATGA+AGG - chr1_3:2866224-2866243 Msa0097070:CDS 50.0%
! GGATGGAAGCTTTGGCACAT+GGG - chr1_3:2866474-2866493 Msa0097070:CDS 50.0%
!! AAGGGTGTTACACCTGAAGG+CGG - chr1_3:2866533-2866552 Msa0097070:CDS 50.0%
!! GGATTGGTTGAGGCACACTA+GGG - chr1_3:2866556-2866575 Msa0097070:CDS 50.0%
GGTTTCCGTAGCTGTGAATC+TGG - chr1_3:2866577-2866596 Msa0097070:CDS 50.0%
GATGCTAGTGCTAGTGATGG+TGG - chr1_3:2866623-2866642 Msa0097070:CDS 50.0%
!! GATGGTGGAGCACAAGAGAA+TGG - chr1_3:2866638-2866657 Msa0097070:CDS 50.0%
ATTTGCCGATGTAGATGCCG+CGG + chr1_3:2866690-2866709 None:intergenic 50.0%
CAAAGGTTAGGGCTACTGTC+CGG - chr1_3:2866749-2866768 Msa0097070:CDS 50.0%
AAAGGTTAGGGCTACTGTCC+GGG - chr1_3:2866750-2866769 Msa0097070:CDS 50.0%
ACTGTCCGGGAGGAAAATTG+TGG - chr1_3:2866763-2866782 Msa0097070:CDS 50.0%
! GCTAGCCACAATTTTCCTCC+CGG + chr1_3:2866771-2866790 None:intergenic 50.0%
GATCATCGGAGAAACCAAGG+CGG + chr1_3:2865280-2865299 None:intergenic 50.0%
GGAGATCATCGGAGAAACCA+AGG + chr1_3:2865283-2865302 None:intergenic 50.0%
GATGTTGCAGATCCGGTTGA+CGG - chr1_3:2865318-2865337 Msa0097070:CDS 50.0%
AGCTTAAGGCGCGTGAGATT+AGG + chr1_3:2865648-2865667 None:intergenic 50.0%
CGAACTTACGGATGCTGGAA+TGG - chr1_3:2865680-2865699 Msa0097070:CDS 50.0%
TCGAGGAATTGTCGGTGAAG+CGG - chr1_3:2865805-2865824 Msa0097070:CDS 50.0%
AATTGTCGGTGAAGCGGCTT+AGG - chr1_3:2865811-2865830 Msa0097070:CDS 50.0%
ATTGTCGGTGAAGCGGCTTA+GGG - chr1_3:2865812-2865831 Msa0097070:CDS 50.0%
TAGGGGAATTGCTGAGACTG+CGG - chr1_3:2865830-2865849 Msa0097070:CDS 50.0%
AATCGTCTTCAACGACGCAG+CGG + chr1_3:2865883-2865902 None:intergenic 50.0%
GGATGGAAGGCAAATCGGAT+TGG - chr1_3:2866215-2866234 Msa0097070:CDS 50.0%
!! GCAAATCGGATTGGCGATGA+AGG - chr1_3:2866224-2866243 Msa0097070:CDS 50.0%
! GGATGGAAGCTTTGGCACAT+GGG - chr1_3:2866474-2866493 Msa0097070:CDS 50.0%
!! AAGGGTGTTACACCTGAAGG+CGG - chr1_3:2866533-2866552 Msa0097070:CDS 50.0%
!! GGATTGGTTGAGGCACACTA+GGG - chr1_3:2866556-2866575 Msa0097070:CDS 50.0%
GGTTTCCGTAGCTGTGAATC+TGG - chr1_3:2866577-2866596 Msa0097070:CDS 50.0%
GATGCTAGTGCTAGTGATGG+TGG - chr1_3:2866623-2866642 Msa0097070:CDS 50.0%
!! GATGGTGGAGCACAAGAGAA+TGG - chr1_3:2866638-2866657 Msa0097070:CDS 50.0%
ATTTGCCGATGTAGATGCCG+CGG + chr1_3:2866690-2866709 None:intergenic 50.0%
CAAAGGTTAGGGCTACTGTC+CGG - chr1_3:2866749-2866768 Msa0097070:CDS 50.0%
AAAGGTTAGGGCTACTGTCC+GGG - chr1_3:2866750-2866769 Msa0097070:CDS 50.0%
ACTGTCCGGGAGGAAAATTG+TGG - chr1_3:2866763-2866782 Msa0097070:CDS 50.0%
! GCTAGCCACAATTTTCCTCC+CGG + chr1_3:2866771-2866790 None:intergenic 50.0%
ATCGGTTGCCTGCACTTTCC+CGG + chr1_3:2865236-2865255 None:intergenic 55.0%
!!! GGCGGTGGATCTGTTGGTTT+TGG + chr1_3:2865262-2865281 None:intergenic 55.0%
AACCAACAGATCCACCGCCT+TGG - chr1_3:2865263-2865282 Msa0097070:CDS 55.0%
AACCAAGGCGGTGGATCTGT+TGG + chr1_3:2865268-2865287 None:intergenic 55.0%
CCGTCGTCTGTGGAGATCAT+CGG + chr1_3:2865294-2865313 None:intergenic 55.0%
CCGATGATCTCCACAGACGA+CGG - chr1_3:2865291-2865310 Msa0097070:CDS 55.0%
AACATCGTCACCGTCGTCTG+TGG + chr1_3:2865304-2865323 None:intergenic 55.0%
CGGTGACGATGTTGCAGATC+CGG - chr1_3:2865311-2865330 Msa0097070:CDS 55.0%
TCGTTACCGTCACCGTCAAC+CGG + chr1_3:2865333-2865352 None:intergenic 55.0%
! GTTGACGGTGACGGTAACGA+CGG - chr1_3:2865333-2865352 Msa0097070:CDS 55.0%
! GGTGACGGTAACGACGGAAT+CGG - chr1_3:2865339-2865358 Msa0097070:CDS 55.0%
AGTGTTCACTCGTTTGCCGG+CGG - chr1_3:2865442-2865461 Msa0097070:CDS 55.0%
TGTCGCGAACTTACGGATGC+TGG - chr1_3:2865675-2865694 Msa0097070:CDS 55.0%
TTGTCGGTGAAGCGGCTTAG+GGG - chr1_3:2865813-2865832 Msa0097070:CDS 55.0%
! GGGATGGAAGCTTTGGCACA+TGG - chr1_3:2866473-2866492 Msa0097070:CDS 55.0%
GGCACATGGGTGTCCCAATT+TGG - chr1_3:2866487-2866506 Msa0097070:CDS 55.0%
! AGGGTGTTACACCTGAAGGC+GGG - chr1_3:2866534-2866553 Msa0097070:CDS 55.0%
TTACACCTGAAGGCGGGGAT+TGG - chr1_3:2866540-2866559 Msa0097070:CDS 55.0%
!! GGGATTGGTTGAGGCACACT+AGG - chr1_3:2866555-2866574 Msa0097070:CDS 55.0%
CGCGTCCAGATTCACAGCTA+CGG + chr1_3:2866585-2866604 None:intergenic 55.0%
CGTAGCTGTGAATCTGGACG+CGG - chr1_3:2866583-2866602 Msa0097070:CDS 55.0%
ATCGGTTGCCTGCACTTTCC+CGG + chr1_3:2865236-2865255 None:intergenic 55.0%
!!! GGCGGTGGATCTGTTGGTTT+TGG + chr1_3:2865262-2865281 None:intergenic 55.0%
AACCAACAGATCCACCGCCT+TGG - chr1_3:2865263-2865282 Msa0097070:CDS 55.0%
AACCAAGGCGGTGGATCTGT+TGG + chr1_3:2865268-2865287 None:intergenic 55.0%
CCGTCGTCTGTGGAGATCAT+CGG + chr1_3:2865294-2865313 None:intergenic 55.0%
CCGATGATCTCCACAGACGA+CGG - chr1_3:2865291-2865310 Msa0097070:CDS 55.0%
AACATCGTCACCGTCGTCTG+TGG + chr1_3:2865304-2865323 None:intergenic 55.0%
CGGTGACGATGTTGCAGATC+CGG - chr1_3:2865311-2865330 Msa0097070:CDS 55.0%
TCGTTACCGTCACCGTCAAC+CGG + chr1_3:2865333-2865352 None:intergenic 55.0%
! GTTGACGGTGACGGTAACGA+CGG - chr1_3:2865333-2865352 Msa0097070:CDS 55.0%
! GGTGACGGTAACGACGGAAT+CGG - chr1_3:2865339-2865358 Msa0097070:CDS 55.0%
AGTGTTCACTCGTTTGCCGG+CGG - chr1_3:2865442-2865461 Msa0097070:CDS 55.0%
TGTCGCGAACTTACGGATGC+TGG - chr1_3:2865675-2865694 Msa0097070:CDS 55.0%
TTGTCGGTGAAGCGGCTTAG+GGG - chr1_3:2865813-2865832 Msa0097070:CDS 55.0%
! GGGATGGAAGCTTTGGCACA+TGG - chr1_3:2866473-2866492 Msa0097070:CDS 55.0%
GGCACATGGGTGTCCCAATT+TGG - chr1_3:2866487-2866506 Msa0097070:CDS 55.0%
! AGGGTGTTACACCTGAAGGC+GGG - chr1_3:2866534-2866553 Msa0097070:CDS 55.0%
TTACACCTGAAGGCGGGGAT+TGG - chr1_3:2866540-2866559 Msa0097070:CDS 55.0%
!! GGGATTGGTTGAGGCACACT+AGG - chr1_3:2866555-2866574 Msa0097070:CDS 55.0%
CGCGTCCAGATTCACAGCTA+CGG + chr1_3:2866585-2866604 None:intergenic 55.0%
CGTAGCTGTGAATCTGGACG+CGG - chr1_3:2866583-2866602 Msa0097070:CDS 55.0%
CAAGCAGCTTCCACGGTCAC+CGG - chr1_3:2865201-2865220 Msa0097070:CDS 60.0%
! ACTTTCCCGGCGGTTGGTTC+CGG + chr1_3:2865223-2865242 None:intergenic 60.0%
CATCGGAGAAACCAAGGCGG+TGG + chr1_3:2865277-2865296 None:intergenic 60.0%
GCAGATCCGGTTGACGGTGA+CGG - chr1_3:2865324-2865343 Msa0097070:CDS 60.0%
CTTCAACGTGAAGCCACCGC+CGG + chr1_3:2865461-2865480 None:intergenic 60.0%
TGAAAATTGCGCCGCGCTCG+AGG - chr1_3:2865788-2865807 Msa0097070:CDS 60.0%
CACCGACAATTCCTCGAGCG+CGG + chr1_3:2865802-2865821 None:intergenic 60.0%
GGGAATTGCTGAGACTGCGG+TGG - chr1_3:2865833-2865852 Msa0097070:CDS 60.0%
! GGGTGTTACACCTGAAGGCG+GGG - chr1_3:2866535-2866554 Msa0097070:CDS 60.0%
CTCAACCAATCCCCGCCTTC+AGG + chr1_3:2866548-2866567 None:intergenic 60.0%
!! CTGAAGGCGGGGATTGGTTG+AGG - chr1_3:2866546-2866565 Msa0097070:CDS 60.0%
GGTAGCACTAGTGCCCGTCA+TGG - chr1_3:2866812-2866831 Msa0097070:CDS 60.0%
CAAGCAGCTTCCACGGTCAC+CGG - chr1_3:2865201-2865220 Msa0097070:CDS 60.0%
! ACTTTCCCGGCGGTTGGTTC+CGG + chr1_3:2865223-2865242 None:intergenic 60.0%
CATCGGAGAAACCAAGGCGG+TGG + chr1_3:2865277-2865296 None:intergenic 60.0%
GCAGATCCGGTTGACGGTGA+CGG - chr1_3:2865324-2865343 Msa0097070:CDS 60.0%
CTTCAACGTGAAGCCACCGC+CGG + chr1_3:2865461-2865480 None:intergenic 60.0%
TGAAAATTGCGCCGCGCTCG+AGG - chr1_3:2865788-2865807 Msa0097070:CDS 60.0%
CACCGACAATTCCTCGAGCG+CGG + chr1_3:2865802-2865821 None:intergenic 60.0%
GGGAATTGCTGAGACTGCGG+TGG - chr1_3:2865833-2865852 Msa0097070:CDS 60.0%
! GGGTGTTACACCTGAAGGCG+GGG - chr1_3:2866535-2866554 Msa0097070:CDS 60.0%
CTCAACCAATCCCCGCCTTC+AGG + chr1_3:2866548-2866567 None:intergenic 60.0%
!! CTGAAGGCGGGGATTGGTTG+AGG - chr1_3:2866546-2866565 Msa0097070:CDS 60.0%
GGTAGCACTAGTGCCCGTCA+TGG - chr1_3:2866812-2866831 Msa0097070:CDS 60.0%
CGGTGACCGTGGAAGCTGCT+TGG + chr1_3:2865203-2865222 None:intergenic 65.0%
! ACCAACCGCCGGGAAAGTGC+AGG - chr1_3:2865225-2865244 Msa0097070:CDS 65.0%
GGTTGCCTGCACTTTCCCGG+CGG + chr1_3:2865233-2865252 None:intergenic 65.0%
GTTCACTCGTTTGCCGGCGG+TGG - chr1_3:2865445-2865464 Msa0097070:CDS 65.0%
CGGCGGTGGCTTCACGTTGA+AGG - chr1_3:2865459-2865478 Msa0097070:CDS 65.0%
CCGTAAGTTCGCGACACGCG+CGG + chr1_3:2865671-2865690 None:intergenic 65.0%
CCGCGCGTGTCGCGAACTTA+CGG - chr1_3:2865668-2865687 Msa0097070:CDS 65.0%
CGCCGCGCTCGAGGAATTGT+CGG - chr1_3:2865797-2865816 Msa0097070:CDS 65.0%
ACTGCGGTGGCTGAGCCGAT+TGG - chr1_3:2865846-2865865 Msa0097070:CDS 65.0%
GGTGGCTGAGCCGATTGGAC+CGG - chr1_3:2865851-2865870 Msa0097070:CDS 65.0%
GTGGCTGAGCCGATTGGACC+GGG - chr1_3:2865852-2865871 Msa0097070:CDS 65.0%
TGAGCCGATTGGACCGGGTG+TGG - chr1_3:2865857-2865876 Msa0097070:CDS 65.0%
TCCTTCAATGCCCGGCTCCG+CGG - chr1_3:2866670-2866689 Msa0097070:CDS 65.0%
GATGTAGATGCCGCGGAGCC+GGG + chr1_3:2866683-2866702 None:intergenic 65.0%
CGATGTAGATGCCGCGGAGC+CGG + chr1_3:2866684-2866703 None:intergenic 65.0%
CGGCTCCGCGGCATCTACAT+CGG - chr1_3:2866682-2866701 Msa0097070:CDS 65.0%
GGTTAGGGCTACTGTCCGGG+AGG - chr1_3:2866753-2866772 Msa0097070:CDS 65.0%
CGGTGACCGTGGAAGCTGCT+TGG + chr1_3:2865203-2865222 None:intergenic 65.0%
! ACCAACCGCCGGGAAAGTGC+AGG - chr1_3:2865225-2865244 Msa0097070:CDS 65.0%
GGTTGCCTGCACTTTCCCGG+CGG + chr1_3:2865233-2865252 None:intergenic 65.0%
GTTCACTCGTTTGCCGGCGG+TGG - chr1_3:2865445-2865464 Msa0097070:CDS 65.0%
CGGCGGTGGCTTCACGTTGA+AGG - chr1_3:2865459-2865478 Msa0097070:CDS 65.0%
CCGTAAGTTCGCGACACGCG+CGG + chr1_3:2865671-2865690 None:intergenic 65.0%
CCGCGCGTGTCGCGAACTTA+CGG - chr1_3:2865668-2865687 Msa0097070:CDS 65.0%
CGCCGCGCTCGAGGAATTGT+CGG - chr1_3:2865797-2865816 Msa0097070:CDS 65.0%
ACTGCGGTGGCTGAGCCGAT+TGG - chr1_3:2865846-2865865 Msa0097070:CDS 65.0%
GGTGGCTGAGCCGATTGGAC+CGG - chr1_3:2865851-2865870 Msa0097070:CDS 65.0%
GTGGCTGAGCCGATTGGACC+GGG - chr1_3:2865852-2865871 Msa0097070:CDS 65.0%
TGAGCCGATTGGACCGGGTG+TGG - chr1_3:2865857-2865876 Msa0097070:CDS 65.0%
TCCTTCAATGCCCGGCTCCG+CGG - chr1_3:2866670-2866689 Msa0097070:CDS 65.0%
GATGTAGATGCCGCGGAGCC+GGG + chr1_3:2866683-2866702 None:intergenic 65.0%
CGATGTAGATGCCGCGGAGC+CGG + chr1_3:2866684-2866703 None:intergenic 65.0%
CGGCTCCGCGGCATCTACAT+CGG - chr1_3:2866682-2866701 Msa0097070:CDS 65.0%
GGTTAGGGCTACTGTCCGGG+AGG - chr1_3:2866753-2866772 Msa0097070:CDS 65.0%
! GCGGTTGGTTCCGGTGACCG+TGG + chr1_3:2865214-2865233 None:intergenic 70.0%
CGGTCACCGGAACCAACCGC+CGG - chr1_3:2865214-2865233 Msa0097070:CDS 70.0%
GGTCACCGGAACCAACCGCC+GGG - chr1_3:2865215-2865234 Msa0097070:CDS 70.0%
GCCTGCACTTTCCCGGCGGT+TGG + chr1_3:2865229-2865248 None:intergenic 70.0%
CGCGACACGCGCGGAGCTTA+AGG + chr1_3:2865662-2865681 None:intergenic 70.0%
GCGGCCACACCCGGTCCAAT+CGG + chr1_3:2865864-2865883 None:intergenic 70.0%
AACGACGCAGCGGCCACACC+CGG + chr1_3:2865873-2865892 None:intergenic 70.0%
! GCGGTTGGTTCCGGTGACCG+TGG + chr1_3:2865214-2865233 None:intergenic 70.0%
CGGTCACCGGAACCAACCGC+CGG - chr1_3:2865214-2865233 Msa0097070:CDS 70.0%
GGTCACCGGAACCAACCGCC+GGG - chr1_3:2865215-2865234 Msa0097070:CDS 70.0%
GCCTGCACTTTCCCGGCGGT+TGG + chr1_3:2865229-2865248 None:intergenic 70.0%
CGCGACACGCGCGGAGCTTA+AGG + chr1_3:2865662-2865681 None:intergenic 70.0%
GCGGCCACACCCGGTCCAAT+CGG + chr1_3:2865864-2865883 None:intergenic 70.0%
AACGACGCAGCGGCCACACC+CGG + chr1_3:2865873-2865892 None:intergenic 70.0%
!! GCCGCGGAGCCGGGCATTGA+AGG + chr1_3:2866674-2866693 None:intergenic 75.0%
!! GCCGCGGAGCCGGGCATTGA+AGG + chr1_3:2866674-2866693 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2865195 2866838 2865195 ID=Msa0097070;Name=Msa0097070
chr1_3 mRNA 2865195 2866838 2865195 ID=Msa0097070-mRNA-1;Parent=Msa0097070;Name=Msa0097070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|547
chr1_3 exon 2865195 2866838 2865195 ID=Msa0097070-mRNA-1:exon:785;Parent=Msa0097070-mRNA-1
chr1_3 CDS 2865195 2866838 2865195 ID=Msa0097070-mRNA-1:cds;Parent=Msa0097070-mRNA-1
Gene Sequence

>Msa0097070

ATGGGCCAAGCAGCTTCCACGGTCACCGGAACCAACCGCCGGGAAAGTGCAGGCAACCGATCTACCAAAACCAACAGATCCACCGCCTTGGTTTCTCCGATGATCTCCACAGACGACGGTGACGATGTTGCAGATCCGGTTGACGGTGACGGTAACGACGGAATCGGAAACTCCGATTATATATCAGAACTACCTGATGAATGTTTAGCGATTGTGTTTCAGTCGTTGAATCCCTCTGATCGGAATCAGTGTTCACTCGTTTGCCGGCGGTGGCTTCACGTTGAAGGACAGAGTCGTCAACGGCTTTCGTTGAACGCGAAGTTTGATCTTCTTCCGGTAATTCCTTCTCTGTTTAATCGATTTGATTCAGTGACGAAATTAGCGTTGAAGTGTGATCGTAGATCTGCGAGTATTAGAGATGAAGCGCTTGTGATAATCTCTGAGCGTTGTCCTAATCTCACGCGCCTTAAGCTCCGCGCGTGTCGCGAACTTACGGATGCTGGAATGGAAGCTTTTGCTAAGAATTGTAAGGGTTTGAGGAAATTATCGTGTGGATCTTGTACTTTTGGATCTAAAGGTATGAACGCGGTGCTTGAAAATTGCGCCGCGCTCGAGGAATTGTCGGTGAAGCGGCTTAGGGGAATTGCTGAGACTGCGGTGGCTGAGCCGATTGGACCGGGTGTGGCCGCTGCGTCGTTGAAGACGATTTGTTTGAAGGAACTTTATAATGGACAGTGTTTTGGTTCGTTGATTTTAGGTGCTAAGAATTTGAAGACTTTGAAGCTATTTCGATGTTCCGGTGATTGGGATACGCTTTTTACACTTATGGCTGAAAGAGTGTCGAGTATGATTGTTGAGGTTCATTTTGAGAGGCTTCAGATTAGTGATATTGGATTGCAAGCTATTTCGAATTGTTCGAATTTGGAGATTTTGCATCTTGTTAAGACACCTGAGTGTACTGATATGGGACTTGTTGCGATTGCTGAAAGATGTAAGTTGTTAAGGAAGCTACATATTGATGGATGGAAGGCAAATCGGATTGGCGATGAAGGGTTAATTGCGGTTGCAAAGTTTTGCCCTAATTTGCAAGAATTGGTGCTTATTGGTGTTAACCCAACGAGAGTGAGTTTGGAAATGTTGGCATCGAATTGCCCGAATCTAGAGAGATTGGCTTTGTGTGCAAGTGATACTGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTTTGGCTTTGAAGAAACTTTGCATCAAGAGTTGTCCTGTTTCTGATCTTGGGATGGAAGCTTTGGCACATGGGTGTCCCAATTTGGTGAAAGTGAAGGTCAAGAAGTGTAAGGGTGTTACACCTGAAGGCGGGGATTGGTTGAGGCACACTAGGGTTTCCGTAGCTGTGAATCTGGACGCGGTTGAAGCAGAACTTCAAGATGCTAGTGCTAGTGATGGTGGAGCACAAGAGAATGGGATTGAATTTCCTTCAATGCCCGGCTCCGCGGCATCTACATCGGCAAATATTGCATCGAGAAGTACTGTTCGATCGAGTTCATTCAAGCAAAGGTTAGGGCTACTGTCCGGGAGGAAAATTGTGGCTAGCACTTTGAGAAGATGGTCAGGTGGTAGCACTAGTGCCCGTCATGGTTAG

Protein sequence

>Msa0097070

MGQAASTVTGTNRRESAGNRSTKTNRSTALVSPMISTDDGDDVADPVDGDGNDGIGNSDYISELPDECLAIVFQSLNPSDRNQCSLVCRRWLHVEGQSRQRLSLNAKFDLLPVIPSLFNRFDSVTKLALKCDRRSASIRDEALVIISERCPNLTRLKLRACRELTDAGMEAFAKNCKGLRKLSCGSCTFGSKGMNAVLENCAALEELSVKRLRGIAETAVAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVSSMIVEVHFERLQISDIGLQAISNCSNLEILHLVKTPECTDMGLVAIAERCKLLRKLHIDGWKANRIGDEGLIAVAKFCPNLQELVLIGVNPTRVSLEMLASNCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVSDLGMEALAHGCPNLVKVKVKKCKGVTPEGGDWLRHTRVSVAVNLDAVEAELQDASASDGGAQENGIEFPSMPGSAASTSANIASRSTVRSSSFKQRLGLLSGRKIVASTLRRWSGGSTSARHG*