Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186620 | XP_003589128.1 | 98.720 | 547 | 7 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1095 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186620 | sp|Q9C626|FB37_ARATH | 66.116 | 484 | 158 | 4 | 55 | 536 | 34 | 513 | 0.0 | 626 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186620 | Q2HTR2 | 98.720 | 547 | 7 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1095 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0052440 | Msa0186620 | 0.870610 | 1.281610e-66 | -8.615850e-47 |
Msa0097070 | Msa0186620 | 0.999186 | 8.393098e-295 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186620 | MtrunA17_Chr1g0152951 | 98.720 | 547 | 7 | 0 | 1 | 547 | 1 | 547 | 0.0 | 1095 |
Msa0186620 | MtrunA17_Chr4g0053361 | 54.472 | 492 | 218 | 3 | 52 | 538 | 34 | 524 | 0.0 | 538 |
Msa0186620 | MtrunA17_Chr2g0286991 | 28.541 | 466 | 251 | 16 | 59 | 449 | 5 | 463 | 1.76e-29 | 122 |
Msa0186620 | MtrunA17_Chr2g0286991 | 26.171 | 363 | 224 | 12 | 98 | 453 | 245 | 570 | 1.49e-17 | 85.9 |
Msa0186620 | MtrunA17_Chr4g0048391 | 23.061 | 490 | 246 | 18 | 57 | 443 | 19 | 480 | 2.12e-17 | 85.5 |
Msa0186620 | MtrunA17_Chr7g0251831 | 24.390 | 492 | 259 | 17 | 61 | 446 | 1 | 485 | 5.88e-16 | 80.9 |
Msa0186620 | MtrunA17_Chr1g0196061 | 21.756 | 501 | 256 | 17 | 64 | 446 | 14 | 496 | 1.66e-15 | 79.7 |
Msa0186620 | MtrunA17_Chr1g0212071 | 24.471 | 425 | 230 | 13 | 66 | 455 | 23 | 391 | 4.63e-15 | 77.4 |
Msa0186620 | MtrunA17_Chr4g0004901 | 26.923 | 260 | 181 | 6 | 187 | 443 | 365 | 618 | 5.54e-15 | 78.2 |
Msa0186620 | MtrunA17_Chr4g0004901 | 29.600 | 250 | 168 | 6 | 134 | 381 | 389 | 632 | 6.16e-15 | 78.2 |
Msa0186620 | MtrunA17_Chr4g0004901 | 26.265 | 415 | 227 | 13 | 103 | 450 | 146 | 548 | 1.25e-11 | 67.4 |
Msa0186620 | MtrunA17_Chr8g0347711 | 25.272 | 368 | 218 | 13 | 61 | 383 | 12 | 367 | 3.53e-14 | 74.3 |
Msa0186620 | MtrunA17_Chr4g0041191 | 24.520 | 469 | 247 | 16 | 54 | 470 | 3 | 416 | 6.12e-14 | 74.7 |
Msa0186620 | MtrunA17_Chr1g0149351 | 24.012 | 329 | 206 | 12 | 134 | 450 | 224 | 520 | 7.19e-14 | 74.3 |
Msa0186620 | MtrunA17_Chr1g0149351 | 30.370 | 135 | 66 | 3 | 320 | 453 | 177 | 284 | 9.13e-12 | 67.8 |
Msa0186620 | MtrunA17_Chr3g0137771 | 37.143 | 140 | 82 | 4 | 320 | 453 | 143 | 282 | 7.11e-13 | 71.2 |
Msa0186620 | MtrunA17_Chr3g0137771 | 22.179 | 514 | 259 | 15 | 61 | 434 | 68 | 580 | 1.34e-11 | 67.4 |
Msa0186620 | MtrunA17_Chr3g0137771 | 30.052 | 193 | 98 | 7 | 294 | 453 | 200 | 388 | 3.48e-11 | 65.9 |
Msa0186620 | MtrunA17_Chr1g0176031 | 27.668 | 253 | 159 | 9 | 120 | 361 | 77 | 316 | 1.06e-12 | 69.7 |
Msa0186620 | MtrunA17_Chr7g0272131 | 26.149 | 348 | 215 | 13 | 138 | 453 | 197 | 534 | 3.01e-12 | 69.3 |
Msa0186620 | MtrunA17_Chr4g0000931 | 28.179 | 291 | 158 | 11 | 64 | 341 | 40 | 292 | 9.88e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186620 | AT1G47056.1 | 66.116 | 484 | 158 | 4 | 55 | 536 | 34 | 513 | 0.0 | 626 |
Msa0186620 | AT4G07400.1 | 61.154 | 520 | 185 | 6 | 14 | 531 | 35 | 539 | 0.0 | 605 |
Msa0186620 | AT5G67250.1 | 55.985 | 543 | 209 | 6 | 1 | 538 | 1 | 518 | 0.0 | 552 |
Msa0186620 | AT3G50080.1 | 56.790 | 486 | 200 | 6 | 56 | 538 | 36 | 514 | 0.0 | 530 |
Msa0186620 | AT4G15475.1 | 29.394 | 330 | 211 | 13 | 127 | 447 | 274 | 590 | 6.21e-23 | 103 |
Msa0186620 | AT4G15475.1 | 27.696 | 408 | 243 | 12 | 51 | 453 | 3 | 363 | 3.65e-22 | 100 |
Msa0186620 | AT2G25490.1 | 26.107 | 429 | 273 | 16 | 61 | 453 | 64 | 484 | 4.91e-17 | 85.1 |
Msa0186620 | AT2G25490.1 | 25.000 | 360 | 203 | 9 | 134 | 432 | 212 | 565 | 3.66e-14 | 75.9 |
Msa0186620 | AT5G27920.1 | 27.019 | 359 | 213 | 13 | 137 | 459 | 158 | 503 | 7.71e-16 | 81.3 |
Msa0186620 | AT5G27920.1 | 26.087 | 299 | 148 | 9 | 158 | 446 | 332 | 567 | 1.61e-11 | 67.4 |
Msa0186620 | AT1G12820.1 | 24.590 | 427 | 252 | 13 | 61 | 443 | 1 | 401 | 9.96e-15 | 77.4 |
Msa0186620 | AT5G01720.1 | 28.516 | 256 | 165 | 6 | 134 | 382 | 338 | 582 | 5.25e-14 | 75.5 |
Msa0186620 | AT5G01720.1 | 23.780 | 492 | 264 | 17 | 64 | 452 | 16 | 499 | 4.54e-12 | 69.3 |
Msa0186620 | AT5G23340.1 | 25.740 | 338 | 181 | 13 | 64 | 365 | 10 | 313 | 1.82e-13 | 72.8 |
Msa0186620 | AT1G80570.2 | 23.448 | 435 | 267 | 15 | 55 | 453 | 8 | 412 | 2.50e-13 | 72.8 |
Msa0186620 | AT3G26810.1 | 24.700 | 417 | 262 | 16 | 61 | 443 | 1 | 399 | 2.54e-13 | 73.2 |
Msa0186620 | AT3G07550.1 | 24.451 | 364 | 217 | 14 | 61 | 377 | 15 | 367 | 5.18e-13 | 71.2 |
Msa0186620 | AT3G07550.2 | 24.451 | 364 | 217 | 14 | 61 | 377 | 15 | 367 | 5.18e-13 | 71.2 |
Msa0186620 | AT1G80570.1 | 24.242 | 429 | 259 | 17 | 61 | 453 | 1 | 399 | 8.72e-13 | 70.9 |
Msa0186620 | AT1G80570.3 | 24.242 | 429 | 259 | 17 | 61 | 453 | 1 | 399 | 8.72e-13 | 70.9 |
Msa0186620 | AT5G25350.1 | 32.653 | 196 | 89 | 7 | 294 | 453 | 180 | 368 | 4.81e-12 | 68.9 |
Msa0186620 | AT4G03190.1 | 22.426 | 437 | 243 | 13 | 80 | 443 | 22 | 435 | 4.82e-11 | 65.9 |
Find 150 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCACCAATTCTTGCAAATT+AGG | 0.147721 | 2_1:+1348145 | None:intergenic |
GACCTTCACTTTCACCAAAT+TGG | 0.167556 | 2_1:+1347916 | None:intergenic |
TATTTCGAATTGTTCGAATT+TGG | 0.247249 | 2_1:-1348320 | Msa0186620:CDS |
AGTTGTCCTGTTTCTGATCT+TGG | 0.260446 | 2_1:-1347965 | Msa0186620:CDS |
AGGCTTCAGATTAGTGATAT+TGG | 0.286479 | 2_1:-1348352 | Msa0186620:CDS |
TTGCAAGAATTGGTGCTTAT+TGG | 0.291569 | 2_1:-1348139 | Msa0186620:CDS |
TCGTGTGGATCTTGTACTTT+TGG | 0.297932 | 2_1:-1348676 | Msa0186620:CDS |
CTTTATAATGGACAGTGTTT+TGG | 0.307331 | 2_1:-1348502 | Msa0186620:CDS |
ATCGGTTGCCTGCACTTTCC+CGG | 0.307896 | 2_1:+1349184 | None:intergenic |
GACACCTGAGTGTACTGATA+TGG | 0.308361 | 2_1:-1348278 | Msa0186620:CDS |
TGATCTTGGGATGGAAGCTT+TGG | 0.309384 | 2_1:-1347951 | Msa0186620:CDS |
GCACCAATTCTTGCAAATTA+GGG | 0.310819 | 2_1:+1348146 | None:intergenic |
GGCGGTGGATCTGTTGGTTT+TGG | 0.323583 | 2_1:+1349158 | None:intergenic |
TTGCCCTAATTTGCAAGAAT+TGG | 0.326430 | 2_1:-1348149 | Msa0186620:CDS |
CTGAAAGATGTAAGTTGTTA+AGG | 0.328374 | 2_1:-1348240 | Msa0186620:CDS |
ACCTTCACTTTCACCAAATT+GGG | 0.329278 | 2_1:+1347917 | None:intergenic |
GGCACATGGGTGTCCCAATT+TGG | 0.331746 | 2_1:-1347930 | Msa0186620:CDS |
CTCAACCAATCCCCGCCTTC+AGG | 0.338516 | 2_1:+1347872 | None:intergenic |
ATCAGTGTTCACTCGTTTGC+CGG | 0.338793 | 2_1:-1348978 | Msa0186620:CDS |
TGTTTGAAGGAACTTTATAA+TGG | 0.338946 | 2_1:-1348514 | Msa0186620:CDS |
TATTTCGATGTTCCGGTGAT+TGG | 0.339573 | 2_1:-1348438 | Msa0186620:CDS |
CTAAGAATTGTAAGGGTTTG+AGG | 0.347732 | 2_1:-1348705 | Msa0186620:CDS |
AATTGTCGGTGAAGCGGCTT+AGG | 0.348422 | 2_1:-1348606 | Msa0186620:CDS |
GTTGTCCTGTTTCTGATCTT+GGG | 0.350129 | 2_1:-1347964 | Msa0186620:CDS |
CGCGACACGCGCGGAGCTTA+AGG | 0.354968 | 2_1:+1348758 | None:intergenic |
TTGCATTGCTGCAAAGTGTT+TGG | 0.356470 | 2_1:-1348011 | Msa0186620:CDS |
CGCGAAGTTTGATCTTCTTC+CGG | 0.356911 | 2_1:-1348908 | Msa0186620:CDS |
TTGAAGCTATTTCGATGTTC+CGG | 0.378035 | 2_1:-1348445 | Msa0186620:CDS |
TAACCCAACGAGAGTGAGTT+TGG | 0.378471 | 2_1:-1348113 | Msa0186620:CDS |
AGTTCATTCAAGCAAAGGTT+AGG | 0.388373 | 2_1:-1347680 | Msa0186620:CDS |
AAAGCCAATCTCTCTAGATT+CGG | 0.392075 | 2_1:+1348070 | None:intergenic |
GTTGAAGACGATTTGTTTGA+AGG | 0.397116 | 2_1:-1348527 | Msa0186620:CDS |
TTAAGGAAGCTACATATTGA+TGG | 0.408793 | 2_1:-1348223 | Msa0186620:CDS |
CGATGTAGATGCCGCGGAGC+CGG | 0.410875 | 2_1:+1347736 | None:intergenic |
GCCGCGGAGCCGGGCATTGA+AGG | 0.418437 | 2_1:+1347746 | None:intergenic |
ATTTCGATGTTCCGGTGATT+GGG | 0.419025 | 2_1:-1348437 | Msa0186620:CDS |
GGTTTCCGTAGCTGTGAATC+TGG | 0.427319 | 2_1:-1347840 | Msa0186620:CDS |
GGGATTGGTTGAGGCACACT+AGG | 0.428246 | 2_1:-1347862 | Msa0186620:CDS |
ACTTTCCCGGCGGTTGGTTC+CGG | 0.430973 | 2_1:+1349197 | None:intergenic |
CCGCGCGTGTCGCGAACTTA+CGG | 0.432226 | 2_1:-1348749 | Msa0186620:CDS |
GATGTAGATGCCGCGGAGCC+GGG | 0.436914 | 2_1:+1347737 | None:intergenic |
GCCTGCACTTTCCCGGCGGT+TGG | 0.443897 | 2_1:+1349191 | None:intergenic |
GTTCACTCGTTTGCCGGCGG+TGG | 0.448947 | 2_1:-1348972 | Msa0186620:CDS |
GGGATGGAAGCTTTGGCACA+TGG | 0.450411 | 2_1:-1347944 | Msa0186620:CDS |
GCAAATCGGATTGGCGATGA+AGG | 0.452211 | 2_1:-1348193 | Msa0186620:CDS |
TGGCTAGCACTTTGAGAAGA+TGG | 0.454655 | 2_1:-1347634 | Msa0186620:CDS |
TTGCCCGAATCTAGAGAGAT+TGG | 0.454730 | 2_1:-1348074 | Msa0186620:CDS |
TTAAACAGAGAAGGAATTAC+CGG | 0.456733 | 2_1:+1348889 | None:intergenic |
CGGTGACGATGTTGCAGATC+CGG | 0.458209 | 2_1:-1349106 | Msa0186620:CDS |
TCGTTACCGTCACCGTCAAC+CGG | 0.458796 | 2_1:+1349087 | None:intergenic |
CGGCGGTGGCTTCACGTTGA+AGG | 0.459312 | 2_1:-1348958 | Msa0186620:CDS |
TGTCGCGAACTTACGGATGC+TGG | 0.459477 | 2_1:-1348742 | Msa0186620:CDS |
CGAACTTACGGATGCTGGAA+TGG | 0.461081 | 2_1:-1348737 | Msa0186620:CDS |
CAAAGGTTAGGGCTACTGTC+CGG | 0.463095 | 2_1:-1347668 | Msa0186620:CDS |
AGGTAGTTCTGATATATAAT+CGG | 0.463807 | 2_1:+1349050 | None:intergenic |
AGCTTAAGGCGCGTGAGATT+AGG | 0.464192 | 2_1:+1348772 | None:intergenic |
TCCTGTTTCTGATCTTGGGA+TGG | 0.465939 | 2_1:-1347960 | Msa0186620:CDS |
TCCATCCCAAGATCAGAAAC+AGG | 0.475671 | 2_1:+1347959 | None:intergenic |
AGTGAAGGTCAAGAAGTGTA+AGG | 0.477496 | 2_1:-1347903 | Msa0186620:CDS |
CGCCGCGCTCGAGGAATTGT+CGG | 0.479472 | 2_1:-1348620 | Msa0186620:CDS |
AAGCCAATCTCTCTAGATTC+GGG | 0.481744 | 2_1:+1348071 | None:intergenic |
TTGATGGATGGAAGGCAAAT+CGG | 0.482279 | 2_1:-1348207 | Msa0186620:CDS |
TTTCCAAACTCACTCTCGTT+GGG | 0.487824 | 2_1:+1348110 | None:intergenic |
GATGGTGGAGCACAAGAGAA+TGG | 0.489500 | 2_1:-1347779 | Msa0186620:CDS |
CGGTGACCGTGGAAGCTGCT+TGG | 0.490935 | 2_1:+1349217 | None:intergenic |
GCGGCCACACCCGGTCCAAT+CGG | 0.492352 | 2_1:+1348556 | None:intergenic |
TTACACCTGAAGGCGGGGAT+TGG | 0.492516 | 2_1:-1347877 | Msa0186620:CDS |
GGTGGCTGAGCCGATTGGAC+CGG | 0.494009 | 2_1:-1348566 | Msa0186620:CDS |
AAAGGTTAGGGCTACTGTCC+GGG | 0.502510 | 2_1:-1347667 | Msa0186620:CDS |
CAAGCAGCTTCCACGGTCAC+CGG | 0.502543 | 2_1:-1349216 | Msa0186620:CDS |
ACACCTGAGTGTACTGATAT+GGG | 0.505583 | 2_1:-1348277 | Msa0186620:CDS |
ATTGAATTTCCTTCAATGCC+CGG | 0.508171 | 2_1:-1347755 | Msa0186620:CDS |
ACCAACCGCCGGGAAAGTGC+AGG | 0.508208 | 2_1:-1349192 | Msa0186620:CDS |
GATCGAGTTCATTCAAGCAA+AGG | 0.510836 | 2_1:-1347685 | Msa0186620:CDS |
ATTTCCAAACTCACTCTCGT+TGG | 0.512369 | 2_1:+1348109 | None:intergenic |
CTGAAGGCGGGGATTGGTTG+AGG | 0.513919 | 2_1:-1347871 | Msa0186620:CDS |
GCAGCAATGCAAGATATCTC+AGG | 0.514016 | 2_1:+1348022 | None:intergenic |
ATTGTCGGTGAAGCGGCTTA+GGG | 0.516744 | 2_1:-1348605 | Msa0186620:CDS |
GAGAGTGAGTTTGGAAATGT+TGG | 0.516798 | 2_1:-1348104 | Msa0186620:CDS |
CGGCTCCGCGGCATCTACAT+CGG | 0.517144 | 2_1:-1347735 | Msa0186620:CDS |
AGCACTTTGAGAAGATGGTC+AGG | 0.520658 | 2_1:-1347629 | Msa0186620:CDS |
CTCTTGTCTCTAACCATGAC+GGG | 0.521217 | 2_1:+1347592 | None:intergenic |
CGGTCACCGGAACCAACCGC+CGG | 0.521564 | 2_1:-1349203 | Msa0186620:CDS |
AACCAACAGATCCACCGCCT+TGG | 0.526292 | 2_1:-1349154 | Msa0186620:CDS |
ATGGTGGAGCACAAGAGAAT+GGG | 0.527565 | 2_1:-1347778 | Msa0186620:CDS |
ACAATCGCTAAACATTCATC+AGG | 0.529545 | 2_1:+1349030 | None:intergenic |
ACTGCGGTGGCTGAGCCGAT+TGG | 0.531430 | 2_1:-1348571 | Msa0186620:CDS |
AACCAAGGCGGTGGATCTGT+TGG | 0.533705 | 2_1:+1349152 | None:intergenic |
AGGGTGTTACACCTGAAGGC+GGG | 0.535285 | 2_1:-1347883 | Msa0186620:CDS |
GGTGACGGTAACGACGGAAT+CGG | 0.538000 | 2_1:-1349078 | Msa0186620:CDS |
GATGGGCCAAGCAGCTTCCA+CGG | 0.538513 | 2_1:-1349223 | Msa0186620:CDS |
TCCTTCAATGCCCGGCTCCG+CGG | 0.540180 | 2_1:-1347747 | Msa0186620:CDS |
GGATGGAAGCTTTGGCACAT+GGG | 0.540954 | 2_1:-1347943 | Msa0186620:CDS |
GGATGGAAGGCAAATCGGAT+TGG | 0.542728 | 2_1:-1348202 | Msa0186620:CDS |
TGAAAATTGCGCCGCGCTCG+AGG | 0.548189 | 2_1:-1348629 | Msa0186620:CDS |
GTTCATTCAAGCAAAGGTTA+GGG | 0.551510 | 2_1:-1347679 | Msa0186620:CDS |
GTGGCTGAGCCGATTGGACC+GGG | 0.559010 | 2_1:-1348565 | Msa0186620:CDS |
CATCGGAGAAACCAAGGCGG+TGG | 0.561191 | 2_1:+1349143 | None:intergenic |
AACGACGCAGCGGCCACACC+CGG | 0.561295 | 2_1:+1348547 | None:intergenic |
TCAAATCGATTAAACAGAGA+AGG | 0.563215 | 2_1:+1348880 | None:intergenic |
CGTAGCTGTGAATCTGGACG+CGG | 0.571152 | 2_1:-1347834 | Msa0186620:CDS |
GGTCACCGGAACCAACCGCC+GGG | 0.573207 | 2_1:-1349202 | Msa0186620:CDS |
CTTCAACGTGAAGCCACCGC+CGG | 0.574094 | 2_1:+1348959 | None:intergenic |
GGATTGGTTGAGGCACACTA+GGG | 0.579593 | 2_1:-1347861 | Msa0186620:CDS |
CCGTAAGTTCGCGACACGCG+CGG | 0.579903 | 2_1:+1348749 | None:intergenic |
TGAGCCGATTGGACCGGGTG+TGG | 0.583172 | 2_1:-1348560 | Msa0186620:CDS |
CGCGTCCAGATTCACAGCTA+CGG | 0.591102 | 2_1:+1347835 | None:intergenic |
GCAGATCCGGTTGACGGTGA+CGG | 0.594512 | 2_1:-1349093 | Msa0186620:CDS |
TCGAGGAATTGTCGGTGAAG+CGG | 0.594693 | 2_1:-1348612 | Msa0186620:CDS |
CCGTCGTCTGTGGAGATCAT+CGG | 0.595495 | 2_1:+1349126 | None:intergenic |
AGTCGTTGAATCCCTCTGAT+CGG | 0.596436 | 2_1:-1349002 | Msa0186620:CDS |
CACCGACAATTCCTCGAGCG+CGG | 0.597818 | 2_1:+1348618 | None:intergenic |
GGAAGCTACATATTGATGGA+TGG | 0.598307 | 2_1:-1348219 | Msa0186620:CDS |
GCTACATATTGATGGATGGA+AGG | 0.601245 | 2_1:-1348215 | Msa0186620:CDS |
GCGGTTGGTTCCGGTGACCG+TGG | 0.602758 | 2_1:+1349206 | None:intergenic |
TGAACACTGATTCCGATCAG+AGG | 0.604053 | 2_1:+1348990 | None:intergenic |
TAGGGGAATTGCTGAGACTG+CGG | 0.604704 | 2_1:-1348587 | Msa0186620:CDS |
GTGAAGGTCAAGAAGTGTAA+GGG | 0.606922 | 2_1:-1347902 | Msa0186620:CDS |
TGTAAGGGTGTTACACCTGA+AGG | 0.607758 | 2_1:-1347887 | Msa0186620:CDS |
GCTCTTGTCTCTAACCATGA+CGG | 0.610454 | 2_1:+1347591 | None:intergenic |
GAACACTGATTCCGATCAGA+GGG | 0.612028 | 2_1:+1348991 | None:intergenic |
GATGCTAGTGCTAGTGATGG+TGG | 0.613432 | 2_1:-1347794 | Msa0186620:CDS |
TTGAAGGACAGAGTCGTCAA+CGG | 0.623455 | 2_1:-1348942 | Msa0186620:CDS |
TTGTCGGTGAAGCGGCTTAG+GGG | 0.627341 | 2_1:-1348604 | Msa0186620:CDS |
CAAATCGGATTGGCGATGAA+GGG | 0.628264 | 2_1:-1348192 | Msa0186620:CDS |
AACATCGTCACCGTCGTCTG+TGG | 0.629183 | 2_1:+1349116 | None:intergenic |
GGGTGTTACACCTGAAGGCG+GGG | 0.630505 | 2_1:-1347882 | Msa0186620:CDS |
TGGCGATGAAGGGTTAATTG+CGG | 0.631783 | 2_1:-1348182 | Msa0186620:CDS |
TCCCAATTTGGTGAAAGTGA+AGG | 0.632374 | 2_1:-1347918 | Msa0186620:CDS |
TTGTGTGCAAGTGATACTGT+TGG | 0.633448 | 2_1:-1348049 | Msa0186620:CDS |
AGTGTTCACTCGTTTGCCGG+CGG | 0.634069 | 2_1:-1348975 | Msa0186620:CDS |
GATGTTGCAGATCCGGTTGA+CGG | 0.647651 | 2_1:-1349099 | Msa0186620:CDS |
GGGAATTGCTGAGACTGCGG+TGG | 0.651918 | 2_1:-1348584 | Msa0186620:CDS |
GGAGATCATCGGAGAAACCA+AGG | 0.659542 | 2_1:+1349137 | None:intergenic |
ATTTGCCGATGTAGATGCCG+CGG | 0.660814 | 2_1:+1347730 | None:intergenic |
GGTAGCACTAGTGCCCGTCA+TGG | 0.661122 | 2_1:-1347605 | Msa0186620:CDS |
CCGATGATCTCCACAGACGA+CGG | 0.673550 | 2_1:-1349126 | Msa0186620:CDS |
CAAGATGCTAGTGCTAGTGA+TGG | 0.682263 | 2_1:-1347797 | Msa0186620:CDS |
GGTTTGAGGAAATTATCGTG+TGG | 0.686243 | 2_1:-1348691 | Msa0186620:CDS |
AGTGTCGAGTATGATTGTTG+AGG | 0.687601 | 2_1:-1348386 | Msa0186620:CDS |
AAGGGTGTTACACCTGAAGG+CGG | 0.687864 | 2_1:-1347884 | Msa0186620:CDS |
ACTGTCCGGGAGGAAAATTG+TGG | 0.692257 | 2_1:-1347654 | Msa0186620:CDS |
ACTTTGAGAAGATGGTCAGG+TGG | 0.698161 | 2_1:-1347626 | Msa0186620:CDS |
GTTGACGGTGACGGTAACGA+CGG | 0.702577 | 2_1:-1349084 | Msa0186620:CDS |
AATCGTCTTCAACGACGCAG+CGG | 0.706961 | 2_1:+1348537 | None:intergenic |
GGTTGCCTGCACTTTCCCGG+CGG | 0.709663 | 2_1:+1349187 | None:intergenic |
GGTTAGGGCTACTGTCCGGG+AGG | 0.714520 | 2_1:-1347664 | Msa0186620:CDS |
AGTCCCATATCAGTACACTC+AGG | 0.721622 | 2_1:+1348274 | None:intergenic |
TGGATCTAAAGGTATGAACG+CGG | 0.726086 | 2_1:-1348656 | Msa0186620:CDS |
GATCATCGGAGAAACCAAGG+CGG | 0.832722 | 2_1:+1349140 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGGTAGTTCTGATATATAAT+CGG | + | chr2_1:1347776-1347795 | None:intergenic | 25.0% |
! | TGTTTGAAGGAACTTTATAA+TGG | - | chr2_1:1348309-1348328 | Msa0186620:CDS | 25.0% |
! | TATTTCGAATTGTTCGAATT+TGG | - | chr2_1:1348503-1348522 | Msa0186620:CDS | 25.0% |
!!! | AGGTAGTTCTGATATATAAT+CGG | + | chr2_1:1347776-1347795 | None:intergenic | 25.0% |
! | TGTTTGAAGGAACTTTATAA+TGG | - | chr2_1:1348309-1348328 | Msa0186620:CDS | 25.0% |
! | TATTTCGAATTGTTCGAATT+TGG | - | chr2_1:1348503-1348522 | Msa0186620:CDS | 25.0% |
TTAAACAGAGAAGGAATTAC+CGG | + | chr2_1:1347937-1347956 | None:intergenic | 30.0% | |
TCAAATCGATTAAACAGAGA+AGG | + | chr2_1:1347946-1347965 | None:intergenic | 30.0% | |
! | AGCTTTTGCTAAGAATTGTA+AGG | - | chr2_1:1348110-1348129 | Msa0186620:CDS | 30.0% |
! | GCTTTTGCTAAGAATTGTAA+GGG | - | chr2_1:1348111-1348130 | Msa0186620:CDS | 30.0% |
! | TCTTGTACTTTTGGATCTAA+AGG | - | chr2_1:1348156-1348175 | Msa0186620:CDS | 30.0% |
!!! | CTTTATAATGGACAGTGTTT+TGG | - | chr2_1:1348321-1348340 | Msa0186620:CDS | 30.0% |
!!! | TGTTTTGGTTCGTTGATTTT+AGG | - | chr2_1:1348336-1348355 | Msa0186620:CDS | 30.0% |
CTGAAAGATGTAAGTTGTTA+AGG | - | chr2_1:1348583-1348602 | Msa0186620:CDS | 30.0% | |
TTAAGGAAGCTACATATTGA+TGG | - | chr2_1:1348600-1348619 | Msa0186620:CDS | 30.0% | |
TTAAACAGAGAAGGAATTAC+CGG | + | chr2_1:1347937-1347956 | None:intergenic | 30.0% | |
TCAAATCGATTAAACAGAGA+AGG | + | chr2_1:1347946-1347965 | None:intergenic | 30.0% | |
! | AGCTTTTGCTAAGAATTGTA+AGG | - | chr2_1:1348110-1348129 | Msa0186620:CDS | 30.0% |
! | GCTTTTGCTAAGAATTGTAA+GGG | - | chr2_1:1348111-1348130 | Msa0186620:CDS | 30.0% |
! | TCTTGTACTTTTGGATCTAA+AGG | - | chr2_1:1348156-1348175 | Msa0186620:CDS | 30.0% |
!!! | CTTTATAATGGACAGTGTTT+TGG | - | chr2_1:1348321-1348340 | Msa0186620:CDS | 30.0% |
!!! | TGTTTTGGTTCGTTGATTTT+AGG | - | chr2_1:1348336-1348355 | Msa0186620:CDS | 30.0% |
CTGAAAGATGTAAGTTGTTA+AGG | - | chr2_1:1348583-1348602 | Msa0186620:CDS | 30.0% | |
TTAAGGAAGCTACATATTGA+TGG | - | chr2_1:1348600-1348619 | Msa0186620:CDS | 30.0% | |
!!! | ATCTGTTGGTTTTGGTAGAT+CGG | + | chr2_1:1347660-1347679 | None:intergenic | 35.0% |
ACAATCGCTAAACATTCATC+AGG | + | chr2_1:1347796-1347815 | None:intergenic | 35.0% | |
CTAAGAATTGTAAGGGTTTG+AGG | - | chr2_1:1348118-1348137 | Msa0186620:CDS | 35.0% | |
! | GTTGAAGACGATTTGTTTGA+AGG | - | chr2_1:1348296-1348315 | Msa0186620:CDS | 35.0% |
! | TTGAAGCTATTTCGATGTTC+CGG | - | chr2_1:1348378-1348397 | Msa0186620:CDS | 35.0% |
!! | GGATACGCTTTTTACACTTA+TGG | - | chr2_1:1348407-1348426 | Msa0186620:CDS | 35.0% |
! | TTGTTGAGGTTCATTTTGAG+AGG | - | chr2_1:1348451-1348470 | Msa0186620:CDS | 35.0% |
AGGCTTCAGATTAGTGATAT+TGG | - | chr2_1:1348471-1348490 | Msa0186620:CDS | 35.0% | |
! | TTGCCCTAATTTGCAAGAAT+TGG | - | chr2_1:1348674-1348693 | Msa0186620:CDS | 35.0% |
GCACCAATTCTTGCAAATTA+GGG | + | chr2_1:1348680-1348699 | None:intergenic | 35.0% | |
AGCACCAATTCTTGCAAATT+AGG | + | chr2_1:1348681-1348700 | None:intergenic | 35.0% | |
! | TTGCAAGAATTGGTGCTTAT+TGG | - | chr2_1:1348684-1348703 | Msa0186620:CDS | 35.0% |
AAAGCCAATCTCTCTAGATT+CGG | + | chr2_1:1348756-1348775 | None:intergenic | 35.0% | |
ACCTTCACTTTCACCAAATT+GGG | + | chr2_1:1348909-1348928 | None:intergenic | 35.0% | |
ATTGAATTTCCTTCAATGCC+CGG | - | chr2_1:1349068-1349087 | Msa0186620:CDS | 35.0% | |
AGTTCATTCAAGCAAAGGTT+AGG | - | chr2_1:1349143-1349162 | Msa0186620:CDS | 35.0% | |
GTTCATTCAAGCAAAGGTTA+GGG | - | chr2_1:1349144-1349163 | Msa0186620:CDS | 35.0% | |
!!! | ATCTGTTGGTTTTGGTAGAT+CGG | + | chr2_1:1347660-1347679 | None:intergenic | 35.0% |
ACAATCGCTAAACATTCATC+AGG | + | chr2_1:1347796-1347815 | None:intergenic | 35.0% | |
CTAAGAATTGTAAGGGTTTG+AGG | - | chr2_1:1348118-1348137 | Msa0186620:CDS | 35.0% | |
! | GTTGAAGACGATTTGTTTGA+AGG | - | chr2_1:1348296-1348315 | Msa0186620:CDS | 35.0% |
! | TTGAAGCTATTTCGATGTTC+CGG | - | chr2_1:1348378-1348397 | Msa0186620:CDS | 35.0% |
!! | GGATACGCTTTTTACACTTA+TGG | - | chr2_1:1348407-1348426 | Msa0186620:CDS | 35.0% |
! | TTGTTGAGGTTCATTTTGAG+AGG | - | chr2_1:1348451-1348470 | Msa0186620:CDS | 35.0% |
AGGCTTCAGATTAGTGATAT+TGG | - | chr2_1:1348471-1348490 | Msa0186620:CDS | 35.0% | |
! | TTGCCCTAATTTGCAAGAAT+TGG | - | chr2_1:1348674-1348693 | Msa0186620:CDS | 35.0% |
GCACCAATTCTTGCAAATTA+GGG | + | chr2_1:1348680-1348699 | None:intergenic | 35.0% | |
AGCACCAATTCTTGCAAATT+AGG | + | chr2_1:1348681-1348700 | None:intergenic | 35.0% | |
! | TTGCAAGAATTGGTGCTTAT+TGG | - | chr2_1:1348684-1348703 | Msa0186620:CDS | 35.0% |
AAAGCCAATCTCTCTAGATT+CGG | + | chr2_1:1348756-1348775 | None:intergenic | 35.0% | |
ACCTTCACTTTCACCAAATT+GGG | + | chr2_1:1348909-1348928 | None:intergenic | 35.0% | |
ATTGAATTTCCTTCAATGCC+CGG | - | chr2_1:1349068-1349087 | Msa0186620:CDS | 35.0% | |
AGTTCATTCAAGCAAAGGTT+AGG | - | chr2_1:1349143-1349162 | Msa0186620:CDS | 35.0% | |
GTTCATTCAAGCAAAGGTTA+GGG | - | chr2_1:1349144-1349163 | Msa0186620:CDS | 35.0% | |
GGTTTGAGGAAATTATCGTG+TGG | - | chr2_1:1348132-1348151 | Msa0186620:CDS | 40.0% | |
! | TCGTGTGGATCTTGTACTTT+TGG | - | chr2_1:1348147-1348166 | Msa0186620:CDS | 40.0% |
! | TGGATCTAAAGGTATGAACG+CGG | - | chr2_1:1348167-1348186 | Msa0186620:CDS | 40.0% |
TATTTCGATGTTCCGGTGAT+TGG | - | chr2_1:1348385-1348404 | Msa0186620:CDS | 40.0% | |
ATTTCGATGTTCCGGTGATT+GGG | - | chr2_1:1348386-1348405 | Msa0186620:CDS | 40.0% | |
! | AAAAAGCGTATCCCAATCAC+CGG | + | chr2_1:1348400-1348419 | None:intergenic | 40.0% |
! | AGTGTCGAGTATGATTGTTG+AGG | - | chr2_1:1348437-1348456 | Msa0186620:CDS | 40.0% |
! | ACACCTGAGTGTACTGATAT+GGG | - | chr2_1:1348546-1348565 | Msa0186620:CDS | 40.0% |
GGAAGCTACATATTGATGGA+TGG | - | chr2_1:1348604-1348623 | Msa0186620:CDS | 40.0% | |
! | GCTACATATTGATGGATGGA+AGG | - | chr2_1:1348608-1348627 | Msa0186620:CDS | 40.0% |
! | TTGATGGATGGAAGGCAAAT+CGG | - | chr2_1:1348616-1348635 | Msa0186620:CDS | 40.0% |
TTTCCAAACTCACTCTCGTT+GGG | + | chr2_1:1348716-1348735 | None:intergenic | 40.0% | |
ATTTCCAAACTCACTCTCGT+TGG | + | chr2_1:1348717-1348736 | None:intergenic | 40.0% | |
GAGAGTGAGTTTGGAAATGT+TGG | - | chr2_1:1348719-1348738 | Msa0186620:CDS | 40.0% | |
AAGCCAATCTCTCTAGATTC+GGG | + | chr2_1:1348755-1348774 | None:intergenic | 40.0% | |
TTGTGTGCAAGTGATACTGT+TGG | - | chr2_1:1348774-1348793 | Msa0186620:CDS | 40.0% | |
! | TTGCATTGCTGCAAAGTGTT+TGG | - | chr2_1:1348812-1348831 | Msa0186620:CDS | 40.0% |
!! | AGTTGTCCTGTTTCTGATCT+TGG | - | chr2_1:1348858-1348877 | Msa0186620:CDS | 40.0% |
!! | GTTGTCCTGTTTCTGATCTT+GGG | - | chr2_1:1348859-1348878 | Msa0186620:CDS | 40.0% |
! | TCCCAATTTGGTGAAAGTGA+AGG | - | chr2_1:1348905-1348924 | Msa0186620:CDS | 40.0% |
GACCTTCACTTTCACCAAAT+TGG | + | chr2_1:1348910-1348929 | None:intergenic | 40.0% | |
! | AGTGAAGGTCAAGAAGTGTA+AGG | - | chr2_1:1348920-1348939 | Msa0186620:CDS | 40.0% |
! | GTGAAGGTCAAGAAGTGTAA+GGG | - | chr2_1:1348921-1348940 | Msa0186620:CDS | 40.0% |
GATCGAGTTCATTCAAGCAA+AGG | - | chr2_1:1349138-1349157 | Msa0186620:CDS | 40.0% | |
GGTTTGAGGAAATTATCGTG+TGG | - | chr2_1:1348132-1348151 | Msa0186620:CDS | 40.0% | |
! | TCGTGTGGATCTTGTACTTT+TGG | - | chr2_1:1348147-1348166 | Msa0186620:CDS | 40.0% |
! | TGGATCTAAAGGTATGAACG+CGG | - | chr2_1:1348167-1348186 | Msa0186620:CDS | 40.0% |
TATTTCGATGTTCCGGTGAT+TGG | - | chr2_1:1348385-1348404 | Msa0186620:CDS | 40.0% | |
ATTTCGATGTTCCGGTGATT+GGG | - | chr2_1:1348386-1348405 | Msa0186620:CDS | 40.0% | |
! | AAAAAGCGTATCCCAATCAC+CGG | + | chr2_1:1348400-1348419 | None:intergenic | 40.0% |
! | AGTGTCGAGTATGATTGTTG+AGG | - | chr2_1:1348437-1348456 | Msa0186620:CDS | 40.0% |
! | ACACCTGAGTGTACTGATAT+GGG | - | chr2_1:1348546-1348565 | Msa0186620:CDS | 40.0% |
GGAAGCTACATATTGATGGA+TGG | - | chr2_1:1348604-1348623 | Msa0186620:CDS | 40.0% | |
! | GCTACATATTGATGGATGGA+AGG | - | chr2_1:1348608-1348627 | Msa0186620:CDS | 40.0% |
! | TTGATGGATGGAAGGCAAAT+CGG | - | chr2_1:1348616-1348635 | Msa0186620:CDS | 40.0% |
TTTCCAAACTCACTCTCGTT+GGG | + | chr2_1:1348716-1348735 | None:intergenic | 40.0% | |
ATTTCCAAACTCACTCTCGT+TGG | + | chr2_1:1348717-1348736 | None:intergenic | 40.0% | |
GAGAGTGAGTTTGGAAATGT+TGG | - | chr2_1:1348719-1348738 | Msa0186620:CDS | 40.0% | |
AAGCCAATCTCTCTAGATTC+GGG | + | chr2_1:1348755-1348774 | None:intergenic | 40.0% | |
TTGTGTGCAAGTGATACTGT+TGG | - | chr2_1:1348774-1348793 | Msa0186620:CDS | 40.0% | |
! | TTGCATTGCTGCAAAGTGTT+TGG | - | chr2_1:1348812-1348831 | Msa0186620:CDS | 40.0% |
!! | AGTTGTCCTGTTTCTGATCT+TGG | - | chr2_1:1348858-1348877 | Msa0186620:CDS | 40.0% |
!! | GTTGTCCTGTTTCTGATCTT+GGG | - | chr2_1:1348859-1348878 | Msa0186620:CDS | 40.0% |
! | TCCCAATTTGGTGAAAGTGA+AGG | - | chr2_1:1348905-1348924 | Msa0186620:CDS | 40.0% |
GACCTTCACTTTCACCAAAT+TGG | + | chr2_1:1348910-1348929 | None:intergenic | 40.0% | |
! | AGTGAAGGTCAAGAAGTGTA+AGG | - | chr2_1:1348920-1348939 | Msa0186620:CDS | 40.0% |
! | GTGAAGGTCAAGAAGTGTAA+GGG | - | chr2_1:1348921-1348940 | Msa0186620:CDS | 40.0% |
GATCGAGTTCATTCAAGCAA+AGG | - | chr2_1:1349138-1349157 | Msa0186620:CDS | 40.0% | |
AGTCGTTGAATCCCTCTGAT+CGG | - | chr2_1:1347821-1347840 | Msa0186620:CDS | 45.0% | |
!! | GAACACTGATTCCGATCAGA+GGG | + | chr2_1:1347835-1347854 | None:intergenic | 45.0% |
!! | TGAACACTGATTCCGATCAG+AGG | + | chr2_1:1347836-1347855 | None:intergenic | 45.0% |
ATCAGTGTTCACTCGTTTGC+CGG | - | chr2_1:1347845-1347864 | Msa0186620:CDS | 45.0% | |
TTGAAGGACAGAGTCGTCAA+CGG | - | chr2_1:1347881-1347900 | Msa0186620:CDS | 45.0% | |
CGCGAAGTTTGATCTTCTTC+CGG | - | chr2_1:1347915-1347934 | Msa0186620:CDS | 45.0% | |
! | GACACCTGAGTGTACTGATA+TGG | - | chr2_1:1348545-1348564 | Msa0186620:CDS | 45.0% |
AGTCCCATATCAGTACACTC+AGG | + | chr2_1:1348552-1348571 | None:intergenic | 45.0% | |
!! | CAAATCGGATTGGCGATGAA+GGG | - | chr2_1:1348631-1348650 | Msa0186620:CDS | 45.0% |
TGGCGATGAAGGGTTAATTG+CGG | - | chr2_1:1348641-1348660 | Msa0186620:CDS | 45.0% | |
TAACCCAACGAGAGTGAGTT+TGG | - | chr2_1:1348710-1348729 | Msa0186620:CDS | 45.0% | |
TTGCCCGAATCTAGAGAGAT+TGG | - | chr2_1:1348749-1348768 | Msa0186620:CDS | 45.0% | |
GCAGCAATGCAAGATATCTC+AGG | + | chr2_1:1348804-1348823 | None:intergenic | 45.0% | |
!! | TCCTGTTTCTGATCTTGGGA+TGG | - | chr2_1:1348863-1348882 | Msa0186620:CDS | 45.0% |
TCCATCCCAAGATCAGAAAC+AGG | + | chr2_1:1348867-1348886 | None:intergenic | 45.0% | |
TGATCTTGGGATGGAAGCTT+TGG | - | chr2_1:1348872-1348891 | Msa0186620:CDS | 45.0% | |
!! | TGTAAGGGTGTTACACCTGA+AGG | - | chr2_1:1348936-1348955 | Msa0186620:CDS | 45.0% |
CAAGATGCTAGTGCTAGTGA+TGG | - | chr2_1:1349026-1349045 | Msa0186620:CDS | 45.0% | |
! | ATGGTGGAGCACAAGAGAAT+GGG | - | chr2_1:1349045-1349064 | Msa0186620:CDS | 45.0% |
! | TGGCTAGCACTTTGAGAAGA+TGG | - | chr2_1:1349189-1349208 | Msa0186620:CDS | 45.0% |
! | AGCACTTTGAGAAGATGGTC+AGG | - | chr2_1:1349194-1349213 | Msa0186620:CDS | 45.0% |
! | ACTTTGAGAAGATGGTCAGG+TGG | - | chr2_1:1349197-1349216 | Msa0186620:CDS | 45.0% |
AGTCGTTGAATCCCTCTGAT+CGG | - | chr2_1:1347821-1347840 | Msa0186620:CDS | 45.0% | |
!! | GAACACTGATTCCGATCAGA+GGG | + | chr2_1:1347835-1347854 | None:intergenic | 45.0% |
!! | TGAACACTGATTCCGATCAG+AGG | + | chr2_1:1347836-1347855 | None:intergenic | 45.0% |
ATCAGTGTTCACTCGTTTGC+CGG | - | chr2_1:1347845-1347864 | Msa0186620:CDS | 45.0% | |
TTGAAGGACAGAGTCGTCAA+CGG | - | chr2_1:1347881-1347900 | Msa0186620:CDS | 45.0% | |
CGCGAAGTTTGATCTTCTTC+CGG | - | chr2_1:1347915-1347934 | Msa0186620:CDS | 45.0% | |
! | GACACCTGAGTGTACTGATA+TGG | - | chr2_1:1348545-1348564 | Msa0186620:CDS | 45.0% |
AGTCCCATATCAGTACACTC+AGG | + | chr2_1:1348552-1348571 | None:intergenic | 45.0% | |
!! | CAAATCGGATTGGCGATGAA+GGG | - | chr2_1:1348631-1348650 | Msa0186620:CDS | 45.0% |
TGGCGATGAAGGGTTAATTG+CGG | - | chr2_1:1348641-1348660 | Msa0186620:CDS | 45.0% | |
TAACCCAACGAGAGTGAGTT+TGG | - | chr2_1:1348710-1348729 | Msa0186620:CDS | 45.0% | |
TTGCCCGAATCTAGAGAGAT+TGG | - | chr2_1:1348749-1348768 | Msa0186620:CDS | 45.0% | |
GCAGCAATGCAAGATATCTC+AGG | + | chr2_1:1348804-1348823 | None:intergenic | 45.0% | |
!! | TCCTGTTTCTGATCTTGGGA+TGG | - | chr2_1:1348863-1348882 | Msa0186620:CDS | 45.0% |
TCCATCCCAAGATCAGAAAC+AGG | + | chr2_1:1348867-1348886 | None:intergenic | 45.0% | |
TGATCTTGGGATGGAAGCTT+TGG | - | chr2_1:1348872-1348891 | Msa0186620:CDS | 45.0% | |
!! | TGTAAGGGTGTTACACCTGA+AGG | - | chr2_1:1348936-1348955 | Msa0186620:CDS | 45.0% |
CAAGATGCTAGTGCTAGTGA+TGG | - | chr2_1:1349026-1349045 | Msa0186620:CDS | 45.0% | |
! | ATGGTGGAGCACAAGAGAAT+GGG | - | chr2_1:1349045-1349064 | Msa0186620:CDS | 45.0% |
! | TGGCTAGCACTTTGAGAAGA+TGG | - | chr2_1:1349189-1349208 | Msa0186620:CDS | 45.0% |
! | AGCACTTTGAGAAGATGGTC+AGG | - | chr2_1:1349194-1349213 | Msa0186620:CDS | 45.0% |
! | ACTTTGAGAAGATGGTCAGG+TGG | - | chr2_1:1349197-1349216 | Msa0186620:CDS | 45.0% |
GATCATCGGAGAAACCAAGG+CGG | + | chr2_1:1347686-1347705 | None:intergenic | 50.0% | |
GGAGATCATCGGAGAAACCA+AGG | + | chr2_1:1347689-1347708 | None:intergenic | 50.0% | |
GATGTTGCAGATCCGGTTGA+CGG | - | chr2_1:1347724-1347743 | Msa0186620:CDS | 50.0% | |
AGCTTAAGGCGCGTGAGATT+AGG | + | chr2_1:1348054-1348073 | None:intergenic | 50.0% | |
CGAACTTACGGATGCTGGAA+TGG | - | chr2_1:1348086-1348105 | Msa0186620:CDS | 50.0% | |
TCGAGGAATTGTCGGTGAAG+CGG | - | chr2_1:1348211-1348230 | Msa0186620:CDS | 50.0% | |
AATTGTCGGTGAAGCGGCTT+AGG | - | chr2_1:1348217-1348236 | Msa0186620:CDS | 50.0% | |
ATTGTCGGTGAAGCGGCTTA+GGG | - | chr2_1:1348218-1348237 | Msa0186620:CDS | 50.0% | |
TAGGGGAATTGCTGAGACTG+CGG | - | chr2_1:1348236-1348255 | Msa0186620:CDS | 50.0% | |
AATCGTCTTCAACGACGCAG+CGG | + | chr2_1:1348289-1348308 | None:intergenic | 50.0% | |
GGATGGAAGGCAAATCGGAT+TGG | - | chr2_1:1348621-1348640 | Msa0186620:CDS | 50.0% | |
!! | GCAAATCGGATTGGCGATGA+AGG | - | chr2_1:1348630-1348649 | Msa0186620:CDS | 50.0% |
! | GGATGGAAGCTTTGGCACAT+GGG | - | chr2_1:1348880-1348899 | Msa0186620:CDS | 50.0% |
!! | AAGGGTGTTACACCTGAAGG+CGG | - | chr2_1:1348939-1348958 | Msa0186620:CDS | 50.0% |
!! | GGATTGGTTGAGGCACACTA+GGG | - | chr2_1:1348962-1348981 | Msa0186620:CDS | 50.0% |
GGTTTCCGTAGCTGTGAATC+TGG | - | chr2_1:1348983-1349002 | Msa0186620:CDS | 50.0% | |
GATGCTAGTGCTAGTGATGG+TGG | - | chr2_1:1349029-1349048 | Msa0186620:CDS | 50.0% | |
!! | GATGGTGGAGCACAAGAGAA+TGG | - | chr2_1:1349044-1349063 | Msa0186620:CDS | 50.0% |
ATTTGCCGATGTAGATGCCG+CGG | + | chr2_1:1349096-1349115 | None:intergenic | 50.0% | |
CAAAGGTTAGGGCTACTGTC+CGG | - | chr2_1:1349155-1349174 | Msa0186620:CDS | 50.0% | |
AAAGGTTAGGGCTACTGTCC+GGG | - | chr2_1:1349156-1349175 | Msa0186620:CDS | 50.0% | |
ACTGTCCGGGAGGAAAATTG+TGG | - | chr2_1:1349169-1349188 | Msa0186620:CDS | 50.0% | |
! | GCTAGCCACAATTTTCCTCC+CGG | + | chr2_1:1349177-1349196 | None:intergenic | 50.0% |
GATCATCGGAGAAACCAAGG+CGG | + | chr2_1:1347686-1347705 | None:intergenic | 50.0% | |
GGAGATCATCGGAGAAACCA+AGG | + | chr2_1:1347689-1347708 | None:intergenic | 50.0% | |
GATGTTGCAGATCCGGTTGA+CGG | - | chr2_1:1347724-1347743 | Msa0186620:CDS | 50.0% | |
AGCTTAAGGCGCGTGAGATT+AGG | + | chr2_1:1348054-1348073 | None:intergenic | 50.0% | |
CGAACTTACGGATGCTGGAA+TGG | - | chr2_1:1348086-1348105 | Msa0186620:CDS | 50.0% | |
TCGAGGAATTGTCGGTGAAG+CGG | - | chr2_1:1348211-1348230 | Msa0186620:CDS | 50.0% | |
AATTGTCGGTGAAGCGGCTT+AGG | - | chr2_1:1348217-1348236 | Msa0186620:CDS | 50.0% | |
ATTGTCGGTGAAGCGGCTTA+GGG | - | chr2_1:1348218-1348237 | Msa0186620:CDS | 50.0% | |
TAGGGGAATTGCTGAGACTG+CGG | - | chr2_1:1348236-1348255 | Msa0186620:CDS | 50.0% | |
AATCGTCTTCAACGACGCAG+CGG | + | chr2_1:1348289-1348308 | None:intergenic | 50.0% | |
GGATGGAAGGCAAATCGGAT+TGG | - | chr2_1:1348621-1348640 | Msa0186620:CDS | 50.0% | |
!! | GCAAATCGGATTGGCGATGA+AGG | - | chr2_1:1348630-1348649 | Msa0186620:CDS | 50.0% |
! | GGATGGAAGCTTTGGCACAT+GGG | - | chr2_1:1348880-1348899 | Msa0186620:CDS | 50.0% |
!! | AAGGGTGTTACACCTGAAGG+CGG | - | chr2_1:1348939-1348958 | Msa0186620:CDS | 50.0% |
!! | GGATTGGTTGAGGCACACTA+GGG | - | chr2_1:1348962-1348981 | Msa0186620:CDS | 50.0% |
GGTTTCCGTAGCTGTGAATC+TGG | - | chr2_1:1348983-1349002 | Msa0186620:CDS | 50.0% | |
GATGCTAGTGCTAGTGATGG+TGG | - | chr2_1:1349029-1349048 | Msa0186620:CDS | 50.0% | |
!! | GATGGTGGAGCACAAGAGAA+TGG | - | chr2_1:1349044-1349063 | Msa0186620:CDS | 50.0% |
ATTTGCCGATGTAGATGCCG+CGG | + | chr2_1:1349096-1349115 | None:intergenic | 50.0% | |
CAAAGGTTAGGGCTACTGTC+CGG | - | chr2_1:1349155-1349174 | Msa0186620:CDS | 50.0% | |
AAAGGTTAGGGCTACTGTCC+GGG | - | chr2_1:1349156-1349175 | Msa0186620:CDS | 50.0% | |
ACTGTCCGGGAGGAAAATTG+TGG | - | chr2_1:1349169-1349188 | Msa0186620:CDS | 50.0% | |
! | GCTAGCCACAATTTTCCTCC+CGG | + | chr2_1:1349177-1349196 | None:intergenic | 50.0% |
ATCGGTTGCCTGCACTTTCC+CGG | + | chr2_1:1347642-1347661 | None:intergenic | 55.0% | |
!!! | GGCGGTGGATCTGTTGGTTT+TGG | + | chr2_1:1347668-1347687 | None:intergenic | 55.0% |
AACCAACAGATCCACCGCCT+TGG | - | chr2_1:1347669-1347688 | Msa0186620:CDS | 55.0% | |
AACCAAGGCGGTGGATCTGT+TGG | + | chr2_1:1347674-1347693 | None:intergenic | 55.0% | |
CCGTCGTCTGTGGAGATCAT+CGG | + | chr2_1:1347700-1347719 | None:intergenic | 55.0% | |
CCGATGATCTCCACAGACGA+CGG | - | chr2_1:1347697-1347716 | Msa0186620:CDS | 55.0% | |
AACATCGTCACCGTCGTCTG+TGG | + | chr2_1:1347710-1347729 | None:intergenic | 55.0% | |
CGGTGACGATGTTGCAGATC+CGG | - | chr2_1:1347717-1347736 | Msa0186620:CDS | 55.0% | |
TCGTTACCGTCACCGTCAAC+CGG | + | chr2_1:1347739-1347758 | None:intergenic | 55.0% | |
! | GTTGACGGTGACGGTAACGA+CGG | - | chr2_1:1347739-1347758 | Msa0186620:CDS | 55.0% |
! | GGTGACGGTAACGACGGAAT+CGG | - | chr2_1:1347745-1347764 | Msa0186620:CDS | 55.0% |
AGTGTTCACTCGTTTGCCGG+CGG | - | chr2_1:1347848-1347867 | Msa0186620:CDS | 55.0% | |
TGTCGCGAACTTACGGATGC+TGG | - | chr2_1:1348081-1348100 | Msa0186620:CDS | 55.0% | |
TTGTCGGTGAAGCGGCTTAG+GGG | - | chr2_1:1348219-1348238 | Msa0186620:CDS | 55.0% | |
! | GGGATGGAAGCTTTGGCACA+TGG | - | chr2_1:1348879-1348898 | Msa0186620:CDS | 55.0% |
GGCACATGGGTGTCCCAATT+TGG | - | chr2_1:1348893-1348912 | Msa0186620:CDS | 55.0% | |
! | AGGGTGTTACACCTGAAGGC+GGG | - | chr2_1:1348940-1348959 | Msa0186620:CDS | 55.0% |
TTACACCTGAAGGCGGGGAT+TGG | - | chr2_1:1348946-1348965 | Msa0186620:CDS | 55.0% | |
!! | GGGATTGGTTGAGGCACACT+AGG | - | chr2_1:1348961-1348980 | Msa0186620:CDS | 55.0% |
CGCGTCCAGATTCACAGCTA+CGG | + | chr2_1:1348991-1349010 | None:intergenic | 55.0% | |
CGTAGCTGTGAATCTGGACG+CGG | - | chr2_1:1348989-1349008 | Msa0186620:CDS | 55.0% | |
ATCGGTTGCCTGCACTTTCC+CGG | + | chr2_1:1347642-1347661 | None:intergenic | 55.0% | |
!!! | GGCGGTGGATCTGTTGGTTT+TGG | + | chr2_1:1347668-1347687 | None:intergenic | 55.0% |
AACCAACAGATCCACCGCCT+TGG | - | chr2_1:1347669-1347688 | Msa0186620:CDS | 55.0% | |
AACCAAGGCGGTGGATCTGT+TGG | + | chr2_1:1347674-1347693 | None:intergenic | 55.0% | |
CCGTCGTCTGTGGAGATCAT+CGG | + | chr2_1:1347700-1347719 | None:intergenic | 55.0% | |
CCGATGATCTCCACAGACGA+CGG | - | chr2_1:1347697-1347716 | Msa0186620:CDS | 55.0% | |
AACATCGTCACCGTCGTCTG+TGG | + | chr2_1:1347710-1347729 | None:intergenic | 55.0% | |
CGGTGACGATGTTGCAGATC+CGG | - | chr2_1:1347717-1347736 | Msa0186620:CDS | 55.0% | |
TCGTTACCGTCACCGTCAAC+CGG | + | chr2_1:1347739-1347758 | None:intergenic | 55.0% | |
! | GTTGACGGTGACGGTAACGA+CGG | - | chr2_1:1347739-1347758 | Msa0186620:CDS | 55.0% |
! | GGTGACGGTAACGACGGAAT+CGG | - | chr2_1:1347745-1347764 | Msa0186620:CDS | 55.0% |
AGTGTTCACTCGTTTGCCGG+CGG | - | chr2_1:1347848-1347867 | Msa0186620:CDS | 55.0% | |
TGTCGCGAACTTACGGATGC+TGG | - | chr2_1:1348081-1348100 | Msa0186620:CDS | 55.0% | |
TTGTCGGTGAAGCGGCTTAG+GGG | - | chr2_1:1348219-1348238 | Msa0186620:CDS | 55.0% | |
! | GGGATGGAAGCTTTGGCACA+TGG | - | chr2_1:1348879-1348898 | Msa0186620:CDS | 55.0% |
GGCACATGGGTGTCCCAATT+TGG | - | chr2_1:1348893-1348912 | Msa0186620:CDS | 55.0% | |
! | AGGGTGTTACACCTGAAGGC+GGG | - | chr2_1:1348940-1348959 | Msa0186620:CDS | 55.0% |
TTACACCTGAAGGCGGGGAT+TGG | - | chr2_1:1348946-1348965 | Msa0186620:CDS | 55.0% | |
!! | GGGATTGGTTGAGGCACACT+AGG | - | chr2_1:1348961-1348980 | Msa0186620:CDS | 55.0% |
CGCGTCCAGATTCACAGCTA+CGG | + | chr2_1:1348991-1349010 | None:intergenic | 55.0% | |
CGTAGCTGTGAATCTGGACG+CGG | - | chr2_1:1348989-1349008 | Msa0186620:CDS | 55.0% | |
CAAGCAGCTTCCACGGTCAC+CGG | - | chr2_1:1347607-1347626 | Msa0186620:CDS | 60.0% | |
! | ACTTTCCCGGCGGTTGGTTC+CGG | + | chr2_1:1347629-1347648 | None:intergenic | 60.0% |
CATCGGAGAAACCAAGGCGG+TGG | + | chr2_1:1347683-1347702 | None:intergenic | 60.0% | |
GCAGATCCGGTTGACGGTGA+CGG | - | chr2_1:1347730-1347749 | Msa0186620:CDS | 60.0% | |
CTTCAACGTGAAGCCACCGC+CGG | + | chr2_1:1347867-1347886 | None:intergenic | 60.0% | |
TGAAAATTGCGCCGCGCTCG+AGG | - | chr2_1:1348194-1348213 | Msa0186620:CDS | 60.0% | |
CACCGACAATTCCTCGAGCG+CGG | + | chr2_1:1348208-1348227 | None:intergenic | 60.0% | |
GGGAATTGCTGAGACTGCGG+TGG | - | chr2_1:1348239-1348258 | Msa0186620:CDS | 60.0% | |
! | GGGTGTTACACCTGAAGGCG+GGG | - | chr2_1:1348941-1348960 | Msa0186620:CDS | 60.0% |
CTCAACCAATCCCCGCCTTC+AGG | + | chr2_1:1348954-1348973 | None:intergenic | 60.0% | |
!! | CTGAAGGCGGGGATTGGTTG+AGG | - | chr2_1:1348952-1348971 | Msa0186620:CDS | 60.0% |
GGTAGCACTAGTGCCCGTCA+TGG | - | chr2_1:1349218-1349237 | Msa0186620:CDS | 60.0% | |
CAAGCAGCTTCCACGGTCAC+CGG | - | chr2_1:1347607-1347626 | Msa0186620:CDS | 60.0% | |
! | ACTTTCCCGGCGGTTGGTTC+CGG | + | chr2_1:1347629-1347648 | None:intergenic | 60.0% |
CATCGGAGAAACCAAGGCGG+TGG | + | chr2_1:1347683-1347702 | None:intergenic | 60.0% | |
GCAGATCCGGTTGACGGTGA+CGG | - | chr2_1:1347730-1347749 | Msa0186620:CDS | 60.0% | |
CTTCAACGTGAAGCCACCGC+CGG | + | chr2_1:1347867-1347886 | None:intergenic | 60.0% | |
TGAAAATTGCGCCGCGCTCG+AGG | - | chr2_1:1348194-1348213 | Msa0186620:CDS | 60.0% | |
CACCGACAATTCCTCGAGCG+CGG | + | chr2_1:1348208-1348227 | None:intergenic | 60.0% | |
GGGAATTGCTGAGACTGCGG+TGG | - | chr2_1:1348239-1348258 | Msa0186620:CDS | 60.0% | |
! | GGGTGTTACACCTGAAGGCG+GGG | - | chr2_1:1348941-1348960 | Msa0186620:CDS | 60.0% |
CTCAACCAATCCCCGCCTTC+AGG | + | chr2_1:1348954-1348973 | None:intergenic | 60.0% | |
!! | CTGAAGGCGGGGATTGGTTG+AGG | - | chr2_1:1348952-1348971 | Msa0186620:CDS | 60.0% |
GGTAGCACTAGTGCCCGTCA+TGG | - | chr2_1:1349218-1349237 | Msa0186620:CDS | 60.0% | |
CGGTGACCGTGGAAGCTGCT+TGG | + | chr2_1:1347609-1347628 | None:intergenic | 65.0% | |
! | ACCAACCGCCGGGAAAGTGC+AGG | - | chr2_1:1347631-1347650 | Msa0186620:CDS | 65.0% |
GGTTGCCTGCACTTTCCCGG+CGG | + | chr2_1:1347639-1347658 | None:intergenic | 65.0% | |
GTTCACTCGTTTGCCGGCGG+TGG | - | chr2_1:1347851-1347870 | Msa0186620:CDS | 65.0% | |
CGGCGGTGGCTTCACGTTGA+AGG | - | chr2_1:1347865-1347884 | Msa0186620:CDS | 65.0% | |
CCGTAAGTTCGCGACACGCG+CGG | + | chr2_1:1348077-1348096 | None:intergenic | 65.0% | |
CCGCGCGTGTCGCGAACTTA+CGG | - | chr2_1:1348074-1348093 | Msa0186620:CDS | 65.0% | |
CGCCGCGCTCGAGGAATTGT+CGG | - | chr2_1:1348203-1348222 | Msa0186620:CDS | 65.0% | |
ACTGCGGTGGCTGAGCCGAT+TGG | - | chr2_1:1348252-1348271 | Msa0186620:CDS | 65.0% | |
GGTGGCTGAGCCGATTGGAC+CGG | - | chr2_1:1348257-1348276 | Msa0186620:CDS | 65.0% | |
GTGGCTGAGCCGATTGGACC+GGG | - | chr2_1:1348258-1348277 | Msa0186620:CDS | 65.0% | |
TGAGCCGATTGGACCGGGTG+TGG | - | chr2_1:1348263-1348282 | Msa0186620:CDS | 65.0% | |
TCCTTCAATGCCCGGCTCCG+CGG | - | chr2_1:1349076-1349095 | Msa0186620:CDS | 65.0% | |
GATGTAGATGCCGCGGAGCC+GGG | + | chr2_1:1349089-1349108 | None:intergenic | 65.0% | |
CGATGTAGATGCCGCGGAGC+CGG | + | chr2_1:1349090-1349109 | None:intergenic | 65.0% | |
CGGCTCCGCGGCATCTACAT+CGG | - | chr2_1:1349088-1349107 | Msa0186620:CDS | 65.0% | |
GGTTAGGGCTACTGTCCGGG+AGG | - | chr2_1:1349159-1349178 | Msa0186620:CDS | 65.0% | |
CGGTGACCGTGGAAGCTGCT+TGG | + | chr2_1:1347609-1347628 | None:intergenic | 65.0% | |
! | ACCAACCGCCGGGAAAGTGC+AGG | - | chr2_1:1347631-1347650 | Msa0186620:CDS | 65.0% |
GGTTGCCTGCACTTTCCCGG+CGG | + | chr2_1:1347639-1347658 | None:intergenic | 65.0% | |
GTTCACTCGTTTGCCGGCGG+TGG | - | chr2_1:1347851-1347870 | Msa0186620:CDS | 65.0% | |
CGGCGGTGGCTTCACGTTGA+AGG | - | chr2_1:1347865-1347884 | Msa0186620:CDS | 65.0% | |
CCGTAAGTTCGCGACACGCG+CGG | + | chr2_1:1348077-1348096 | None:intergenic | 65.0% | |
CCGCGCGTGTCGCGAACTTA+CGG | - | chr2_1:1348074-1348093 | Msa0186620:CDS | 65.0% | |
CGCCGCGCTCGAGGAATTGT+CGG | - | chr2_1:1348203-1348222 | Msa0186620:CDS | 65.0% | |
ACTGCGGTGGCTGAGCCGAT+TGG | - | chr2_1:1348252-1348271 | Msa0186620:CDS | 65.0% | |
GGTGGCTGAGCCGATTGGAC+CGG | - | chr2_1:1348257-1348276 | Msa0186620:CDS | 65.0% | |
GTGGCTGAGCCGATTGGACC+GGG | - | chr2_1:1348258-1348277 | Msa0186620:CDS | 65.0% | |
TGAGCCGATTGGACCGGGTG+TGG | - | chr2_1:1348263-1348282 | Msa0186620:CDS | 65.0% | |
TCCTTCAATGCCCGGCTCCG+CGG | - | chr2_1:1349076-1349095 | Msa0186620:CDS | 65.0% | |
GATGTAGATGCCGCGGAGCC+GGG | + | chr2_1:1349089-1349108 | None:intergenic | 65.0% | |
CGATGTAGATGCCGCGGAGC+CGG | + | chr2_1:1349090-1349109 | None:intergenic | 65.0% | |
CGGCTCCGCGGCATCTACAT+CGG | - | chr2_1:1349088-1349107 | Msa0186620:CDS | 65.0% | |
GGTTAGGGCTACTGTCCGGG+AGG | - | chr2_1:1349159-1349178 | Msa0186620:CDS | 65.0% | |
! | GCGGTTGGTTCCGGTGACCG+TGG | + | chr2_1:1347620-1347639 | None:intergenic | 70.0% |
CGGTCACCGGAACCAACCGC+CGG | - | chr2_1:1347620-1347639 | Msa0186620:CDS | 70.0% | |
GGTCACCGGAACCAACCGCC+GGG | - | chr2_1:1347621-1347640 | Msa0186620:CDS | 70.0% | |
GCCTGCACTTTCCCGGCGGT+TGG | + | chr2_1:1347635-1347654 | None:intergenic | 70.0% | |
CGCGACACGCGCGGAGCTTA+AGG | + | chr2_1:1348068-1348087 | None:intergenic | 70.0% | |
GCGGCCACACCCGGTCCAAT+CGG | + | chr2_1:1348270-1348289 | None:intergenic | 70.0% | |
AACGACGCAGCGGCCACACC+CGG | + | chr2_1:1348279-1348298 | None:intergenic | 70.0% | |
! | GCGGTTGGTTCCGGTGACCG+TGG | + | chr2_1:1347620-1347639 | None:intergenic | 70.0% |
CGGTCACCGGAACCAACCGC+CGG | - | chr2_1:1347620-1347639 | Msa0186620:CDS | 70.0% | |
GGTCACCGGAACCAACCGCC+GGG | - | chr2_1:1347621-1347640 | Msa0186620:CDS | 70.0% | |
GCCTGCACTTTCCCGGCGGT+TGG | + | chr2_1:1347635-1347654 | None:intergenic | 70.0% | |
CGCGACACGCGCGGAGCTTA+AGG | + | chr2_1:1348068-1348087 | None:intergenic | 70.0% | |
GCGGCCACACCCGGTCCAAT+CGG | + | chr2_1:1348270-1348289 | None:intergenic | 70.0% | |
AACGACGCAGCGGCCACACC+CGG | + | chr2_1:1348279-1348298 | None:intergenic | 70.0% | |
!! | GCCGCGGAGCCGGGCATTGA+AGG | + | chr2_1:1349080-1349099 | None:intergenic | 75.0% |
!! | GCCGCGGAGCCGGGCATTGA+AGG | + | chr2_1:1349080-1349099 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 1347601 | 1349244 | 1347601 | ID=Msa0186620;Name=Msa0186620 |
chr2_1 | mRNA | 1347601 | 1349244 | 1347601 | ID=Msa0186620-mRNA-1;Parent=Msa0186620;Name=Msa0186620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|547 |
chr2_1 | exon | 1347601 | 1349244 | 1347601 | ID=Msa0186620-mRNA-1:exon:572;Parent=Msa0186620-mRNA-1 |
chr2_1 | CDS | 1347601 | 1349244 | 1347601 | ID=Msa0186620-mRNA-1:cds;Parent=Msa0186620-mRNA-1 |
Gene Sequence |
Protein sequence |