Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099800 | AES59048.1 | 98.438 | 64 | 1 | 0 | 1 | 64 | 1 | 64 | 2.32e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099800 | G7I7J6 | 98.438 | 64 | 1 | 0 | 1 | 64 | 1 | 64 | 1.11e-36 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005420 | Msa0099800 | 0.837812 | 4.166471e-57 | -8.615850e-47 |
| Msa0005430 | Msa0099800 | 0.856564 | 2.953363e-62 | -8.615850e-47 |
| Msa0099800 | Msa1412530 | 0.805026 | 1.627841e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099800 | MtrunA17_Chr1g0150441 | 98.438 | 64 | 1 | 0 | 1 | 64 | 1 | 64 | 2.14e-40 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099800 | AT5G10745.1 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
| Msa0099800 | AT5G10745.3 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
| Msa0099800 | AT5G10745.2 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
Find 30 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACACACTCTGAATTATA+TGG | 0.262823 | 1_3:+6094662 | None:intergenic |
| TTCTTCTATTTCAGGTGTAT+TGG | 0.265942 | 1_3:-6097337 | Msa0099800:intron |
| CCTCTACGCAGTTCCTTTGT+TGG | 0.316353 | 1_3:-6097476 | Msa0099800:CDS |
| CGCATTTCATGTCCTCGCTT+TGG | 0.342769 | 1_3:-6097440 | Msa0099800:intron |
| TGCTCGGAACATGGAGTGTT+CGG | 0.344526 | 1_3:+6097636 | None:intergenic |
| CAGGTATTATGTTAGATCAT+TGG | 0.345785 | 1_3:-6095081 | Msa0099800:three_prime_UTR |
| CTAGTGAATTCGCCATTGTT+AGG | 0.378454 | 1_3:+6097518 | None:intergenic |
| GAGCAACAGAGAGGGATCTT+TGG | 0.379779 | 1_3:-6097618 | Msa0099800:five_prime_UTR |
| AGTATCTTGGGATGTTGCTT+TGG | 0.408343 | 1_3:-6095016 | Msa0099800:intron |
| CACTCTGAATTATATGGGTC+TGG | 0.418705 | 1_3:+6094668 | None:intergenic |
| CCTCTCTGTTGCTCGGAACA+TGG | 0.451735 | 1_3:+6097627 | None:intergenic |
| GCTCGGAACATGGAGTGTTC+GGG | 0.452606 | 1_3:+6097637 | None:intergenic |
| GTAGAGCCAGACCAGTATCT+TGG | 0.463781 | 1_3:-6095029 | Msa0099800:three_prime_UTR |
| TGTTGTAGTGTCTGTTGTTG+TGG | 0.489081 | 1_3:+6097287 | None:intergenic |
| TAGAGCCAGACCAGTATCTT+GGG | 0.505768 | 1_3:-6095028 | Msa0099800:three_prime_UTR |
| CGGTGAAGGATGTGGCAATA+CGG | 0.516675 | 1_3:+6097554 | None:intergenic |
| AAAGCAACATCCCAAGATAC+TGG | 0.517738 | 1_3:+6095018 | None:intergenic |
| ACACACACTCTGAATTATAT+GGG | 0.523466 | 1_3:+6094663 | None:intergenic |
| AACATCCCAAGATACTGGTC+TGG | 0.525580 | 1_3:+6095023 | None:intergenic |
| CACTAGAGCAATCTCGTCCA+TGG | 0.558619 | 1_3:-6097501 | Msa0099800:CDS |
| AATTGAAACGGTGAAGGATG+TGG | 0.561795 | 1_3:+6097546 | None:intergenic |
| ACAACAGCAACAGAGGAGAA+AGG | 0.567130 | 1_3:-6097252 | Msa0099800:CDS |
| AAAGATCCCTCTCTGTTGCT+CGG | 0.569041 | 1_3:+6097620 | None:intergenic |
| TTCAGCAACAACAGCAACAG+AGG | 0.580372 | 1_3:-6097259 | Msa0099800:CDS |
| TCGAAAATGATTGATGATTG+AGG | 0.595475 | 1_3:-6094587 | Msa0099800:three_prime_UTR |
| TTCAATTCAAAACCTAACAA+TGG | 0.603527 | 1_3:-6097530 | Msa0099800:exon |
| CATGTTCCGAGCAACAGAGA+GGG | 0.640554 | 1_3:-6097626 | Msa0099800:five_prime_UTR |
| GGAACTGCGTAGAGGAACCA+TGG | 0.645531 | 1_3:+6097484 | None:intergenic |
| CCAACAAAGGAACTGCGTAG+AGG | 0.689308 | 1_3:+6097476 | None:intergenic |
| CCATGTTCCGAGCAACAGAG+AGG | 0.703225 | 1_3:-6097627 | Msa0099800:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATTTTTGTTTTAAT+AGG | - | chr1_3:6096852-6096871 | Msa0099800:intron | 10.0% |
| !! | AAATTTATAAATACATATGT+TGG | - | chr1_3:6096895-6096914 | Msa0099800:intron | 10.0% |
| !! | TGAAAAAAAAAGGAAAAATT+GGG | + | chr1_3:6094771-6094790 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAAGGAAAAAT+TGG | + | chr1_3:6094772-6094791 | None:intergenic | 15.0% |
| !! | AATTTCACATTTCAAAAATT+AGG | + | chr1_3:6094805-6094824 | None:intergenic | 15.0% |
| !!! | AATTTTAAGTTGTTAAATTG+AGG | - | chr1_3:6095280-6095299 | Msa0099800:intron | 15.0% |
| !!! | AATTTTAAGTTGTTAAATTG+AGG | - | chr1_3:6095280-6095299 | Msa0099800:intron | 15.0% |
| !!! | CATAAAAGATTTTTTTCTTT+AGG | - | chr1_3:6095874-6095893 | Msa0099800:intron | 15.0% |
| !! | TATGAAAATGAGTTATAAAA+TGG | - | chr1_3:6096996-6097015 | Msa0099800:intron | 15.0% |
| !! | AAGTTATCAATTTACTTTAT+TGG | - | chr1_3:6097211-6097230 | Msa0099800:intron | 15.0% |
| !! | TTAGTAGAATTTGAAGAAAT+TGG | - | chr1_3:6095084-6095103 | Msa0099800:intron | 20.0% |
| !! | AAATTGAGGTTATATTAAGA+AGG | - | chr1_3:6095294-6095313 | Msa0099800:intron | 20.0% |
| !! | TTAGTAGAATTTGAAGAAAT+TGG | - | chr1_3:6095084-6095103 | Msa0099800:intron | 20.0% |
| !! | AAATTGAGGTTATATTAAGA+AGG | - | chr1_3:6095294-6095313 | Msa0099800:intron | 20.0% |
| !! | TTGCATGTAATTATGTTAAA+TGG | - | chr1_3:6095691-6095710 | Msa0099800:intron | 20.0% |
| !!! | AAAAGATTTTTTTCTTTAGG+TGG | - | chr1_3:6095877-6095896 | Msa0099800:intron | 20.0% |
| !!! | AAAGATTTTTTTCTTTAGGT+GGG | - | chr1_3:6095878-6095897 | Msa0099800:intron | 20.0% |
| !!! | TTTGTCATAAACTTAGTTTT+TGG | - | chr1_3:6095941-6095960 | Msa0099800:intron | 20.0% |
| !!! | ATACTTGTTTTGATAAAAGA+AGG | + | chr1_3:6096006-6096025 | None:intergenic | 20.0% |
| !!! | TTCCTCTGTTTTTATTTTTT+AGG | - | chr1_3:6096065-6096084 | Msa0099800:intron | 20.0% |
| !! | AACCTAAAAAATAAAAACAG+AGG | + | chr1_3:6096070-6096089 | None:intergenic | 20.0% |
| !! | TTAAGCTTGAAATATATACA+TGG | - | chr1_3:6096143-6096162 | Msa0099800:intron | 20.0% |
| !! | AATATGAAAATGAGATACAT+GGG | + | chr1_3:6096555-6096574 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTAATAGGAAAAG+AGG | - | chr1_3:6096860-6096879 | Msa0099800:intron | 20.0% |
| !!! | TAAAGTAAATTGATAACTTG+TGG | + | chr1_3:6097210-6097229 | None:intergenic | 20.0% |
| !! | ATATCATATCTGTAATAAAC+AGG | + | chr1_3:6097474-6097493 | None:intergenic | 20.0% |
| !!! | TGTTAGGTTTTGAATTGAAA+CGG | + | chr1_3:6094642-6094661 | None:intergenic | 25.0% |
| ! | TTCAATTCAAAACCTAACAA+TGG | - | chr1_3:6094643-6094662 | Msa0099800:three_prime_UTR | 25.0% |
| ! | ATCAAAAGAAAAACCAACAA+AGG | + | chr1_3:6094713-6094732 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAAATTGGGTTA+GGG | + | chr1_3:6094765-6094784 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAAAATTGGGTT+AGG | + | chr1_3:6094766-6094785 | None:intergenic | 25.0% |
| ! | TGCTTAATGTTGTTACAAAT+AGG | - | chr1_3:6095041-6095060 | Msa0099800:three_prime_UTR | 25.0% |
| ! | TTAATGTTGTTACAAATAGG+AGG | - | chr1_3:6095044-6095063 | Msa0099800:three_prime_UTR | 25.0% |
| !!! | ACAATACCGATTATATGTTT+TGG | - | chr1_3:6095215-6095234 | Msa0099800:intron | 25.0% |
| ! | CCAAAACCAAAACATATAAT+CGG | + | chr1_3:6095224-6095243 | None:intergenic | 25.0% |
| ! | TGCTTAATGTTGTTACAAAT+AGG | - | chr1_3:6095041-6095060 | Msa0099800:three_prime_UTR | 25.0% |
| ! | TTAATGTTGTTACAAATAGG+AGG | - | chr1_3:6095044-6095063 | Msa0099800:three_prime_UTR | 25.0% |
| !!! | ACAATACCGATTATATGTTT+TGG | - | chr1_3:6095215-6095234 | Msa0099800:intron | 25.0% |
| ! | CCAAAACCAAAACATATAAT+CGG | + | chr1_3:6095224-6095243 | None:intergenic | 25.0% |
| ! | TGATATTGTTGAAACTGAAA+AGG | - | chr1_3:6095782-6095801 | Msa0099800:intron | 25.0% |
| !!! | CATAAACTTAGTTTTTGGTA+AGG | - | chr1_3:6095946-6095965 | Msa0099800:intron | 25.0% |
| ! | AACAAGTATTAAAGAACTTG+TGG | - | chr1_3:6096017-6096036 | Msa0099800:intron | 25.0% |
| ! | CAATATGAAAATGAGATACA+TGG | + | chr1_3:6096556-6096575 | None:intergenic | 25.0% |
| !!! | CAATATCCTTTTAGTTTTAG+TGG | - | chr1_3:6096588-6096607 | Msa0099800:intron | 25.0% |
| !! | AGATAAAAGATTTTCCAAAG+AGG | - | chr1_3:6096820-6096839 | Msa0099800:intron | 25.0% |
| ! | CAAAAAATTTCTAACCTCTT+TGG | + | chr1_3:6096837-6096856 | None:intergenic | 25.0% |
| ! | ATAAATACATATGTTGGCAT+TGG | - | chr1_3:6096901-6096920 | Msa0099800:intron | 25.0% |
| !! | TCATCTTTTGCTTAAGAATT+AGG | - | chr1_3:6096953-6096972 | Msa0099800:intron | 25.0% |
| ! | TAACATAATACCTGAAGTTA+AGG | + | chr1_3:6097086-6097105 | None:intergenic | 25.0% |
| ! | ACATTAGATGAAGTTATACT+TGG | + | chr1_3:6097350-6097369 | None:intergenic | 25.0% |
| ! | AGAGAATATGCATATAATTG+TGG | - | chr1_3:6097422-6097441 | Msa0099800:intron | 25.0% |
| ! | TTCTTCTATTTCAGGTGTAT+TGG | - | chr1_3:6094836-6094855 | Msa0099800:intron | 30.0% |
| !!! | CATATAGCTGTTGTTTTGAA+AGG | - | chr1_3:6094993-6095012 | Msa0099800:intron | 30.0% |
| !!! | CCGATTATATGTTTTGGTTT+TGG | - | chr1_3:6095221-6095240 | Msa0099800:intron | 30.0% |
| !!! | CATATAGCTGTTGTTTTGAA+AGG | - | chr1_3:6094993-6095012 | Msa0099800:intron | 30.0% |
| !!! | CCGATTATATGTTTTGGTTT+TGG | - | chr1_3:6095221-6095240 | Msa0099800:intron | 30.0% |
| ATTATGTTAAATGGTGTGCT+AGG | - | chr1_3:6095700-6095719 | Msa0099800:intron | 30.0% | |
| TTATGTTAAATGGTGTGCTA+GGG | - | chr1_3:6095701-6095720 | Msa0099800:intron | 30.0% | |
| GATCATGTAGAAGACAAATT+TGG | - | chr1_3:6095745-6095764 | Msa0099800:intron | 30.0% | |
| TATTGTTGAAACTGAAAAGG+AGG | - | chr1_3:6095785-6095804 | Msa0099800:intron | 30.0% | |
| GACAAAAACAAATATTGCAC+AGG | + | chr1_3:6095841-6095860 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCTTTAGGTGGGA+GGG | - | chr1_3:6095882-6095901 | Msa0099800:intron | 30.0% |
| TTTGGTAAGGTCATATTTAG+AGG | - | chr1_3:6095959-6095978 | Msa0099800:intron | 30.0% | |
| AAACCAATAAGGAGAACAAA+GGG | + | chr1_3:6096103-6096122 | None:intergenic | 30.0% | |
| AAAACCAATAAGGAGAACAA+AGG | + | chr1_3:6096104-6096123 | None:intergenic | 30.0% | |
| GTGAAAAGAGAAAACCAATA+AGG | + | chr1_3:6096114-6096133 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTGAGTTTTTGAT+AGG | - | chr1_3:6096217-6096236 | Msa0099800:intron | 30.0% |
| CTTTCTTCTATAATATGCCT+AGG | + | chr1_3:6096246-6096265 | None:intergenic | 30.0% | |
| AGGCATATTATAGAAGAAAG+TGG | - | chr1_3:6096246-6096265 | Msa0099800:intron | 30.0% | |
| GGCATATTATAGAAGAAAGT+GGG | - | chr1_3:6096247-6096266 | Msa0099800:intron | 30.0% | |
| GCATATTATAGAAGAAAGTG+GGG | - | chr1_3:6096248-6096267 | Msa0099800:intron | 30.0% | |
| AATATACTGTGAGTAGAAAG+TGG | - | chr1_3:6096342-6096361 | Msa0099800:intron | 30.0% | |
| ATATACTGTGAGTAGAAAGT+GGG | - | chr1_3:6096343-6096362 | Msa0099800:intron | 30.0% | |
| GTTATGAGATAATATCTGTC+TGG | - | chr1_3:6096399-6096418 | Msa0099800:intron | 30.0% | |
| CATAGAAGCTCTACAATATA+AGG | + | chr1_3:6096455-6096474 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGAGTTCTATCAT+TGG | - | chr1_3:6096516-6096535 | Msa0099800:intron | 30.0% |
| ! | TCTCATTTTCATATTGCATC+AGG | - | chr1_3:6096560-6096579 | Msa0099800:intron | 30.0% |
| ! | CTCATTTTCATATTGCATCA+GGG | - | chr1_3:6096561-6096580 | Msa0099800:intron | 30.0% |
| ! | TCATTTTCATATTGCATCAG+GGG | - | chr1_3:6096562-6096581 | Msa0099800:intron | 30.0% |
| !!! | CTTTTAGTTTTAGTGGTAGT+GGG | - | chr1_3:6096595-6096614 | Msa0099800:intron | 30.0% |
| !!! | TTTTAGTTTTAGTGGTAGTG+GGG | - | chr1_3:6096596-6096615 | Msa0099800:intron | 30.0% |
| GATATGAAACATACTCTTGT+GGG | + | chr1_3:6096643-6096662 | None:intergenic | 30.0% | |
| TGAAACACATTTGTAGAAAC+AGG | - | chr1_3:6096770-6096789 | Msa0099800:intron | 30.0% | |
| TTATTCTATTCTATGCGACT+TGG | - | chr1_3:6097024-6097043 | Msa0099800:intron | 30.0% | |
| ATTTATGTTGCCTTAACTTC+AGG | - | chr1_3:6097073-6097092 | Msa0099800:intron | 30.0% | |
| CAGGTATTATGTTAGATCAT+TGG | - | chr1_3:6097092-6097111 | Msa0099800:intron | 30.0% | |
| ! | AGTCAGTGGTACATTTTTAA+GGG | - | chr1_3:6097236-6097255 | Msa0099800:exon | 30.0% |
| !! | ATTTTTAAGGGATGGGTATT+GGG | - | chr1_3:6097248-6097267 | Msa0099800:CDS | 30.0% |
| GAATGTGAAGTTTATTTGTG+TGG | + | chr1_3:6097298-6097317 | None:intergenic | 30.0% | |
| AAACTTCACATTCTCCTTAT+AGG | - | chr1_3:6097305-6097324 | Msa0099800:CDS | 30.0% | |
| ! | GGTATTTTCACAAACCTATA+AGG | + | chr1_3:6097322-6097341 | None:intergenic | 30.0% |
| ATGAAGTTATACTTGGAAAG+TGG | + | chr1_3:6097343-6097362 | None:intergenic | 30.0% | |
| TTCACTTGATTTCTGAACTT+GGG | - | chr1_3:6097445-6097464 | Msa0099800:CDS | 30.0% | |
| ACACACACTCTGAATTATAT+GGG | + | chr1_3:6097513-6097532 | None:intergenic | 30.0% | |
| ! | TCGAAAATGATTGATGATTG+AGG | - | chr1_3:6097586-6097605 | Msa0099800:five_prime_UTR | 30.0% |
| !! | GTTTTGAATTGAAACGGTGA+AGG | + | chr1_3:6094636-6094655 | None:intergenic | 35.0% |
| CCTGAAATAGAAGAAGAACA+TGG | + | chr1_3:6094831-6094850 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTCTATTTC+AGG | - | chr1_3:6094828-6094847 | Msa0099800:intron | 35.0% | |
| ACAACTTAAAATTCTCGCAC+AGG | + | chr1_3:6095273-6095292 | None:intergenic | 35.0% | |
| ACAACTTAAAATTCTCGCAC+AGG | + | chr1_3:6095273-6095292 | None:intergenic | 35.0% | |
| ! | GAAGACAAATTTGGAATGTG+TGG | - | chr1_3:6095754-6095773 | Msa0099800:intron | 35.0% |
| ! | TGAAACTGAAAAGGAGGTAT+TGG | - | chr1_3:6095791-6095810 | Msa0099800:intron | 35.0% |
| !!! | GATTTTTTTCTTTAGGTGGG+AGG | - | chr1_3:6095881-6095900 | Msa0099800:intron | 35.0% |
| AAGGTCATATTTAGAGGTAG+TGG | - | chr1_3:6095965-6095984 | Msa0099800:intron | 35.0% | |
| TTTCCCTTTGTTCTCCTTAT+TGG | - | chr1_3:6096097-6096116 | Msa0099800:intron | 35.0% | |
| ! | AACTTCCATTTTCTCCCATA+TGG | + | chr1_3:6096274-6096293 | None:intergenic | 35.0% |
| ! | ATTCTAGGAGAGTATGTTAG+AGG | - | chr1_3:6096314-6096333 | Msa0099800:intron | 35.0% |
| TATACTGTGAGTAGAAAGTG+GGG | - | chr1_3:6096344-6096363 | Msa0099800:intron | 35.0% | |
| GAGCATTATTGTTAACGAGT+TGG | - | chr1_3:6096377-6096396 | Msa0099800:intron | 35.0% | |
| GGTATTAGAGTCTCTAACTT+TGG | - | chr1_3:6096420-6096439 | Msa0099800:intron | 35.0% | |
| CCACTACCACTAAAACTAAA+AGG | + | chr1_3:6096597-6096616 | None:intergenic | 35.0% | |
| !!! | CCTTTTAGTTTTAGTGGTAG+TGG | - | chr1_3:6096594-6096613 | Msa0099800:intron | 35.0% |
| !!! | TTTAGTTTTAGTGGTAGTGG+GGG | - | chr1_3:6096597-6096616 | Msa0099800:intron | 35.0% |
| CGATATGAAACATACTCTTG+TGG | + | chr1_3:6096644-6096663 | None:intergenic | 35.0% | |
| TTACTTTATTGGTCAGTCAG+TGG | - | chr1_3:6097222-6097241 | Msa0099800:intron | 35.0% | |
| ! | CAGTCAGTGGTACATTTTTA+AGG | - | chr1_3:6097235-6097254 | Msa0099800:exon | 35.0% |
| !! | AGTGGTACATTTTTAAGGGA+TGG | - | chr1_3:6097240-6097259 | Msa0099800:exon | 35.0% |
| !! | GTGGTACATTTTTAAGGGAT+GGG | - | chr1_3:6097241-6097260 | Msa0099800:exon | 35.0% |
| !! | CATTTTTAAGGGATGGGTAT+TGG | - | chr1_3:6097247-6097266 | Msa0099800:CDS | 35.0% |
| AATAATCAGCAAACAGCAAC+AGG | + | chr1_3:6097396-6097415 | None:intergenic | 35.0% | |
| GTTCACTTGATTTCTGAACT+TGG | - | chr1_3:6097444-6097463 | Msa0099800:CDS | 35.0% | |
| GACACACACTCTGAATTATA+TGG | + | chr1_3:6097514-6097533 | None:intergenic | 35.0% | |
| !!! | GAGTGTGTGTCTTTTGAAAT+TGG | - | chr1_3:6097523-6097542 | Msa0099800:exon | 35.0% |
| AATTGAAACGGTGAAGGATG+TGG | + | chr1_3:6094630-6094649 | None:intergenic | 40.0% | |
| CTAGTGAATTCGCCATTGTT+AGG | + | chr1_3:6094658-6094677 | None:intergenic | 40.0% | |
| ! | TTAGGGTTTTTACCAAAGCG+AGG | + | chr1_3:6094748-6094767 | None:intergenic | 40.0% |
| TGTTGTAGTGTCTGTTGTTG+TGG | + | chr1_3:6094889-6094908 | None:intergenic | 40.0% | |
| !!! | TGCTGCCTGATGTTTTAGAA+CGG | - | chr1_3:6096192-6096211 | Msa0099800:intron | 40.0% |
| !! | AACACCCGTTCTAAAACATC+AGG | + | chr1_3:6096200-6096219 | None:intergenic | 40.0% |
| ! | GAGTTTTTGATAGGACACCT+AGG | - | chr1_3:6096226-6096245 | Msa0099800:intron | 40.0% |
| AGTTCTATCATTGGTCCTCA+TGG | - | chr1_3:6096525-6096544 | Msa0099800:intron | 40.0% | |
| AAAGCAACATCCCAAGATAC+TGG | + | chr1_3:6097158-6097177 | None:intergenic | 40.0% | |
| ! | AGTATCTTGGGATGTTGCTT+TGG | - | chr1_3:6097157-6097176 | Msa0099800:intron | 40.0% |
| CACTCTGAATTATATGGGTC+TGG | + | chr1_3:6097508-6097527 | None:intergenic | 40.0% | |
| AAAGATCCCTCTCTGTTGCT+CGG | + | chr1_3:6094556-6094575 | None:intergenic | 45.0% | |
| TTCAGCAACAACAGCAACAG+AGG | - | chr1_3:6094914-6094933 | Msa0099800:intron | 45.0% | |
| ACAACAGCAACAGAGGAGAA+AGG | - | chr1_3:6094921-6094940 | Msa0099800:intron | 45.0% | |
| TAAATGGTGTGCTAGGGTTG+TGG | - | chr1_3:6095707-6095726 | Msa0099800:intron | 45.0% | |
| AAATGGTGTGCTAGGGTTGT+GGG | - | chr1_3:6095708-6095727 | Msa0099800:intron | 45.0% | |
| TTTCTTTAGGTGGGAGGGAA+TGG | - | chr1_3:6095887-6095906 | Msa0099800:intron | 45.0% | |
| !! | TGGGAGGGAATGGATTACTA+TGG | - | chr1_3:6095897-6095916 | Msa0099800:intron | 45.0% |
| !! | GGGAGGGAATGGATTACTAT+GGG | - | chr1_3:6095898-6095917 | Msa0099800:intron | 45.0% |
| !! | GGAGGGAATGGATTACTATG+GGG | - | chr1_3:6095899-6095918 | Msa0099800:intron | 45.0% |
| !!! | GCTGCCTGATGTTTTAGAAC+GGG | - | chr1_3:6096193-6096212 | Msa0099800:intron | 45.0% |
| TAGAAGAAAGTGGGGCCATA+TGG | - | chr1_3:6096256-6096275 | Msa0099800:intron | 45.0% | |
| AGAAGAAAGTGGGGCCATAT+GGG | - | chr1_3:6096257-6096276 | Msa0099800:intron | 45.0% | |
| CCTAGAATCTAACTCTGCGT+CGG | + | chr1_3:6096302-6096321 | None:intergenic | 45.0% | |
| TGTGAGTAGAAAGTGGGGAA+GGG | - | chr1_3:6096349-6096368 | Msa0099800:intron | 45.0% | |
| AGATACATGGGTATGCCATG+AGG | + | chr1_3:6096543-6096562 | None:intergenic | 45.0% | |
| ATGCATCTGTGGTGTATGGT+AGG | - | chr1_3:6096925-6096944 | Msa0099800:intron | 45.0% | |
| TAGAGCCAGACCAGTATCTT+GGG | - | chr1_3:6097145-6097164 | Msa0099800:intron | 45.0% | |
| AACATCCCAAGATACTGGTC+TGG | + | chr1_3:6097153-6097172 | None:intergenic | 45.0% | |
| !! | AAAATTAAAATGAAAAAAAA+AGG | + | chr1_3:6094781-6094800 | None:intergenic | 5.0% |
| CATGTTCCGAGCAACAGAGA+GGG | - | chr1_3:6094547-6094566 | Msa0099800:three_prime_UTR | 50.0% | |
| GAGCAACAGAGAGGGATCTT+TGG | - | chr1_3:6094555-6094574 | Msa0099800:three_prime_UTR | 50.0% | |
| CGGTGAAGGATGTGGCAATA+CGG | + | chr1_3:6094622-6094641 | None:intergenic | 50.0% | |
| CACTAGAGCAATCTCGTCCA+TGG | - | chr1_3:6094672-6094691 | Msa0099800:three_prime_UTR | 50.0% | |
| CCAACAAAGGAACTGCGTAG+AGG | + | chr1_3:6094700-6094719 | None:intergenic | 50.0% | |
| CCTCTACGCAGTTCCTTTGT+TGG | - | chr1_3:6094697-6094716 | Msa0099800:intron | 50.0% | |
| CGCATTTCATGTCCTCGCTT+TGG | - | chr1_3:6094733-6094752 | Msa0099800:intron | 50.0% | |
| AGCACACAACAACAAGCGGT+AGG | + | chr1_3:6096176-6096195 | None:intergenic | 50.0% | |
| AGGCAGCACACAACAACAAG+CGG | + | chr1_3:6096180-6096199 | None:intergenic | 50.0% | |
| TGGGGCCATATGGGAGAAAA+TGG | - | chr1_3:6096266-6096285 | Msa0099800:intron | 50.0% | |
| CCGACGCAGAGTTAGATTCT+AGG | - | chr1_3:6096299-6096318 | Msa0099800:intron | 50.0% | |
| CTGTGAGTAGAAAGTGGGGA+AGG | - | chr1_3:6096348-6096367 | Msa0099800:intron | 50.0% | |
| TGCGACATGAGCACAATTGC+AGG | + | chr1_3:6096710-6096729 | None:intergenic | 50.0% | |
| !! | TTGGCATTGGCATGCATCTG+TGG | - | chr1_3:6096914-6096933 | Msa0099800:intron | 50.0% |
| TGGCATGCATCTGTGGTGTA+TGG | - | chr1_3:6096921-6096940 | Msa0099800:intron | 50.0% | |
| !!! | TGGTCTGGCTCTACGTTTTG+TGG | + | chr1_3:6097138-6097157 | None:intergenic | 50.0% |
| GTAGAGCCAGACCAGTATCT+TGG | - | chr1_3:6097144-6097163 | Msa0099800:intron | 50.0% | |
| CCTCTCTGTTGCTCGGAACA+TGG | + | chr1_3:6094549-6094568 | None:intergenic | 55.0% | |
| CCATGTTCCGAGCAACAGAG+AGG | - | chr1_3:6094546-6094565 | Msa0099800:three_prime_UTR | 55.0% | |
| GGAACTGCGTAGAGGAACCA+TGG | + | chr1_3:6094692-6094711 | None:intergenic | 55.0% | |
| GTGTGCTAGGGTTGTGGGTA+GGG | - | chr1_3:6095713-6095732 | Msa0099800:intron | 55.0% | |
| CACAACAACAAGCGGTAGGC+AGG | + | chr1_3:6096172-6096191 | None:intergenic | 55.0% | |
| !! | GATGGGTATTGGGCAGTCAG+CGG | - | chr1_3:6097258-6097277 | Msa0099800:CDS | 55.0% |
| GGTGTGCTAGGGTTGTGGGT+AGG | - | chr1_3:6095712-6095731 | Msa0099800:intron | 60.0% | |
| TGCTAGGGTTGTGGGTAGGG+TGG | - | chr1_3:6095716-6095735 | Msa0099800:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 6094539 | 6097656 | 6094539 | ID=Msa0099800;Name=Msa0099800 |
| chr1_3 | mRNA | 6094539 | 6097656 | 6094539 | ID=Msa0099800-mRNA-1;Parent=Msa0099800;Name=Msa0099800-mRNA-1;_AED=0.26;_eAED=0.26;_QI=123|1|1|1|0.33|0.25|4|276|64 |
| chr1_3 | exon | 6094539 | 6094710 | 6094539 | ID=Msa0099800-mRNA-1:exon:2342;Parent=Msa0099800-mRNA-1 |
| chr1_3 | exon | 6095017 | 6095100 | 6095017 | ID=Msa0099800-mRNA-1:exon:2341;Parent=Msa0099800-mRNA-1 |
| chr1_3 | exon | 6097224 | 6097345 | 6097224 | ID=Msa0099800-mRNA-1:exon:2340;Parent=Msa0099800-mRNA-1 |
| chr1_3 | exon | 6097441 | 6097656 | 6097441 | ID=Msa0099800-mRNA-1:exon:2339;Parent=Msa0099800-mRNA-1 |
| chr1_3 | five_prime_UTR | 6097534 | 6097656 | 6097534 | ID=Msa0099800-mRNA-1:five_prime_utr;Parent=Msa0099800-mRNA-1 |
| chr1_3 | CDS | 6097441 | 6097533 | 6097441 | ID=Msa0099800-mRNA-1:cds;Parent=Msa0099800-mRNA-1 |
| chr1_3 | CDS | 6097244 | 6097345 | 6097244 | ID=Msa0099800-mRNA-1:cds;Parent=Msa0099800-mRNA-1 |
| chr1_3 | three_prime_UTR | 6097224 | 6097243 | 6097224 | ID=Msa0099800-mRNA-1:three_prime_utr;Parent=Msa0099800-mRNA-1 |
| chr1_3 | three_prime_UTR | 6095017 | 6095100 | 6095017 | ID=Msa0099800-mRNA-1:three_prime_utr;Parent=Msa0099800-mRNA-1 |
| chr1_3 | three_prime_UTR | 6094539 | 6094710 | 6094539 | ID=Msa0099800-mRNA-1:three_prime_utr;Parent=Msa0099800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
