Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005420 | Msa0005430 | 0.967099 | 8.187592e-127 | -8.615850e-47 |
| Msa0005420 | Msa0099800 | 0.837812 | 4.166471e-57 | -8.615850e-47 |
| Msa0005420 | Msa0189320 | 0.816713 | 4.799240e-52 | -8.615850e-47 |
| Msa0005420 | Msa0602390 | 0.800888 | 1.166482e-48 | -8.615850e-47 |
| Msa0005420 | Msa0607050 | 0.805269 | 1.448392e-49 | -8.615850e-47 |
| Msa0005420 | Msa0709400 | 0.801849 | 7.414405e-49 | -8.615850e-47 |
| Msa0005420 | Msa0945970 | 0.805575 | 1.249162e-49 | -8.615850e-47 |
| Msa0005420 | Msa1147280 | 0.824198 | 9.191772e-54 | -8.615850e-47 |
| Msa0005420 | Msa1165920 | 0.803267 | 3.782605e-49 | -8.615850e-47 |
| Msa0005420 | Msa1244600 | 0.811597 | 6.466657e-51 | -8.615850e-47 |
| Msa0005420 | Msa1374120 | 0.803697 | 3.080588e-49 | -8.615850e-47 |
| Msa0005420 | Msa1382620 | 0.800819 | 1.205099e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005420 | MtrunA17_Chr1g0150441 | 98.438 | 64 | 1 | 0 | 1 | 64 | 1 | 64 | 2.14e-40 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005420 | AT5G10745.1 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
| Msa0005420 | AT5G10745.3 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
| Msa0005420 | AT5G10745.2 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
Find 30 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACACACTCTGAATTATA+TGG | 0.262823 | 1_1:-7974317 | None:intergenic |
| TTCTTCTATTTCAGGTGTAT+TGG | 0.265942 | 1_1:+7971993 | Msa0005420:intron |
| CCTCTACGCAGTTCCTTTGT+TGG | 0.316353 | 1_1:+7971853 | Msa0005420:CDS |
| CGCATTTCATGTCCTCGCTT+TGG | 0.342769 | 1_1:+7971889 | Msa0005420:CDS |
| TGCTCGGAACATGGAGTGTT+CGG | 0.344526 | 1_1:-7971693 | None:intergenic |
| CAGGTATTATGTTAGATCAT+TGG | 0.345785 | 1_1:+7973898 | Msa0005420:intron |
| CTAGTGAATTCGCCATTGTT+AGG | 0.378454 | 1_1:-7971811 | None:intergenic |
| GAGCAACAGAGAGGGATCTT+TGG | 0.379779 | 1_1:+7971711 | Msa0005420:five_prime_UTR |
| AGTATCTTGGGATGTTGCTT+TGG | 0.408343 | 1_1:+7973963 | Msa0005420:three_prime_UTR |
| CACTCTGAATTATATGGGTC+TGG | 0.418705 | 1_1:-7974311 | None:intergenic |
| CCTCTCTGTTGCTCGGAACA+TGG | 0.451735 | 1_1:-7971702 | None:intergenic |
| GCTCGGAACATGGAGTGTTC+GGG | 0.452606 | 1_1:-7971692 | None:intergenic |
| GTAGAGCCAGACCAGTATCT+TGG | 0.463781 | 1_1:+7973950 | Msa0005420:three_prime_UTR |
| TGTTGTAGTGTCTGTTGTTG+TGG | 0.489081 | 1_1:-7972043 | None:intergenic |
| TAGAGCCAGACCAGTATCTT+GGG | 0.505768 | 1_1:+7973951 | Msa0005420:three_prime_UTR |
| CGGTGAAGGATGTGGCAATA+CGG | 0.516675 | 1_1:-7971775 | None:intergenic |
| AAAGCAACATCCCAAGATAC+TGG | 0.517738 | 1_1:-7973961 | None:intergenic |
| ACACACACTCTGAATTATAT+GGG | 0.523466 | 1_1:-7974316 | None:intergenic |
| AACATCCCAAGATACTGGTC+TGG | 0.525580 | 1_1:-7973956 | None:intergenic |
| CACTAGAGCAATCTCGTCCA+TGG | 0.558619 | 1_1:+7971828 | Msa0005420:CDS |
| AATTGAAACGGTGAAGGATG+TGG | 0.561795 | 1_1:-7971783 | None:intergenic |
| ACAACAGCAACAGAGGAGAA+AGG | 0.567130 | 1_1:+7972078 | Msa0005420:CDS |
| AAAGATCCCTCTCTGTTGCT+CGG | 0.569041 | 1_1:-7971709 | None:intergenic |
| TTCAGCAACAACAGCAACAG+AGG | 0.580372 | 1_1:+7972071 | Msa0005420:CDS |
| TCGAAAATGATTGATGATTG+AGG | 0.595475 | 1_1:+7974392 | Msa0005420:three_prime_UTR |
| TTCAATTCAAAACCTAACAA+TGG | 0.603527 | 1_1:+7971799 | Msa0005420:exon |
| CATGTTCCGAGCAACAGAGA+GGG | 0.640554 | 1_1:+7971703 | Msa0005420:five_prime_UTR |
| GGAACTGCGTAGAGGAACCA+TGG | 0.645531 | 1_1:-7971845 | None:intergenic |
| CCAACAAAGGAACTGCGTAG+AGG | 0.689308 | 1_1:-7971853 | None:intergenic |
| CCATGTTCCGAGCAACAGAG+AGG | 0.703225 | 1_1:+7971702 | Msa0005420:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATTTTTGTTTTAAT+AGG | + | chr1_1:7973658-7973677 | Msa0005420:intron | 10.0% |
| !! | AAATTTATAAATACATATGT+TGG | + | chr1_1:7973701-7973720 | Msa0005420:intron | 10.0% |
| !! | GAAAAAAAAAAGGAAAAATT+GGG | - | chr1_1:7971927-7971946 | None:intergenic | 15.0% |
| !! | TGAAAAAAAAAAGGAAAAAT+TGG | - | chr1_1:7971928-7971947 | None:intergenic | 15.0% |
| !! | AATTTCACATTTCAAAAATT+AGG | - | chr1_1:7971962-7971981 | None:intergenic | 15.0% |
| !!! | AATTTTAAGTTGTTAAATTG+AGG | + | chr1_1:7972437-7972456 | Msa0005420:intron | 15.0% |
| !!! | CATAAAAGATTTTTTTCTTT+AGG | + | chr1_1:7972680-7972699 | Msa0005420:intron | 15.0% |
| !! | TATGAAAATGAGTTATAAAA+TGG | + | chr1_1:7973802-7973821 | Msa0005420:intron | 15.0% |
| !! | AAGTTATCAATTTACTTTAT+TGG | + | chr1_1:7974017-7974036 | Msa0005420:intron | 15.0% |
| !! | TTAGTAGAATTTGAAGAAAT+TGG | + | chr1_1:7972241-7972260 | Msa0005420:intron | 20.0% |
| !! | GTTAAATTGAGGTTATATTA+AGG | + | chr1_1:7972448-7972467 | Msa0005420:intron | 20.0% |
| !! | TTGCATGTAATTATGTTAAA+TGG | + | chr1_1:7972497-7972516 | Msa0005420:intron | 20.0% |
| !!! | AAAAGATTTTTTTCTTTAGG+TGG | + | chr1_1:7972683-7972702 | Msa0005420:intron | 20.0% |
| !!! | AAAGATTTTTTTCTTTAGGT+GGG | + | chr1_1:7972684-7972703 | Msa0005420:intron | 20.0% |
| !!! | TTTGTCATAAACTTAGTTTT+TGG | + | chr1_1:7972747-7972766 | Msa0005420:intron | 20.0% |
| !!! | ATACTTGTTTTGATAAAAGA+AGG | - | chr1_1:7972812-7972831 | None:intergenic | 20.0% |
| !!! | TTCCTCTGTTTTTATTTTTT+AGG | + | chr1_1:7972871-7972890 | Msa0005420:intron | 20.0% |
| !! | AACCTAAAAAATAAAAACAG+AGG | - | chr1_1:7972876-7972895 | None:intergenic | 20.0% |
| !! | TTAAGCTTGAAATATATACA+TGG | + | chr1_1:7972949-7972968 | Msa0005420:intron | 20.0% |
| !! | AATATGAAAATGAGATACAT+GGG | - | chr1_1:7973361-7973380 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTAATAGGAAAAG+AGG | + | chr1_1:7973666-7973685 | Msa0005420:intron | 20.0% |
| !!! | TAAAGTAAATTGATAACTTG+TGG | - | chr1_1:7974016-7974035 | None:intergenic | 20.0% |
| !! | ATATCATATCTGTAATAAAC+AGG | - | chr1_1:7974280-7974299 | None:intergenic | 20.0% |
| !!! | TGTTAGGTTTTGAATTGAAA+CGG | - | chr1_1:7971798-7971817 | None:intergenic | 25.0% |
| ! | TTCAATTCAAAACCTAACAA+TGG | + | chr1_1:7971799-7971818 | Msa0005420:exon | 25.0% |
| ! | ATCAAAAGAAAAACCAACAA+AGG | - | chr1_1:7971869-7971888 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAAATTGGGTTA+GGG | - | chr1_1:7971921-7971940 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAAAATTGGGTT+AGG | - | chr1_1:7971922-7971941 | None:intergenic | 25.0% |
| ! | TGCTTAATGTTGTTACAAAT+AGG | + | chr1_1:7972198-7972217 | Msa0005420:intron | 25.0% |
| ! | TTAATGTTGTTACAAATAGG+AGG | + | chr1_1:7972201-7972220 | Msa0005420:intron | 25.0% |
| !!! | ACAATACCGATTATATGTTT+TGG | + | chr1_1:7972372-7972391 | Msa0005420:intron | 25.0% |
| ! | CCAAAACCAAAACATATAAT+CGG | - | chr1_1:7972381-7972400 | None:intergenic | 25.0% |
| ! | AAATTGAGGTTATATTAAGG+TGG | + | chr1_1:7972451-7972470 | Msa0005420:intron | 25.0% |
| ! | TGATATTGTTGAAACTGAAA+AGG | + | chr1_1:7972588-7972607 | Msa0005420:intron | 25.0% |
| !!! | CATAAACTTAGTTTTTGGTA+AGG | + | chr1_1:7972752-7972771 | Msa0005420:intron | 25.0% |
| ! | AACAAGTATTAAAGAACTTG+TGG | + | chr1_1:7972823-7972842 | Msa0005420:intron | 25.0% |
| ! | CAATATGAAAATGAGATACA+TGG | - | chr1_1:7973362-7973381 | None:intergenic | 25.0% |
| !!! | CAATATCCTTTTAGTTTTAG+TGG | + | chr1_1:7973394-7973413 | Msa0005420:intron | 25.0% |
| !! | AGATAAAAGATTTTCCAAAG+AGG | + | chr1_1:7973626-7973645 | Msa0005420:intron | 25.0% |
| ! | CAAAAAATTTCTAACCTCTT+TGG | - | chr1_1:7973643-7973662 | None:intergenic | 25.0% |
| ! | ATAAATACATATGTTGGCAT+TGG | + | chr1_1:7973707-7973726 | Msa0005420:intron | 25.0% |
| !! | TCATCTTTTGCTTAAGAATT+AGG | + | chr1_1:7973759-7973778 | Msa0005420:intron | 25.0% |
| ! | TAACATAATACCTGAAGTTA+AGG | - | chr1_1:7973892-7973911 | None:intergenic | 25.0% |
| ! | ACATTAGATGAAGTTATACT+TGG | - | chr1_1:7974156-7974175 | None:intergenic | 25.0% |
| ! | AGAGAATATGCATATAATTG+TGG | + | chr1_1:7974228-7974247 | Msa0005420:intron | 25.0% |
| ! | TTCTTCTATTTCAGGTGTAT+TGG | + | chr1_1:7971993-7972012 | Msa0005420:intron | 30.0% |
| !!! | CATATAGCTGTTGTTTTGAA+AGG | + | chr1_1:7972150-7972169 | Msa0005420:intron | 30.0% |
| !!! | CCGATTATATGTTTTGGTTT+TGG | + | chr1_1:7972378-7972397 | Msa0005420:intron | 30.0% |
| ATTATGTTAAATGGTGTGCT+AGG | + | chr1_1:7972506-7972525 | Msa0005420:intron | 30.0% | |
| TTATGTTAAATGGTGTGCTA+GGG | + | chr1_1:7972507-7972526 | Msa0005420:intron | 30.0% | |
| GATCATGTAGAAGACAAATT+TGG | + | chr1_1:7972551-7972570 | Msa0005420:intron | 30.0% | |
| TATTGTTGAAACTGAAAAGG+AGG | + | chr1_1:7972591-7972610 | Msa0005420:intron | 30.0% | |
| GACAAAAACAAATATTGCAC+AGG | - | chr1_1:7972647-7972666 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCTTTAGGTGGGA+GGG | + | chr1_1:7972688-7972707 | Msa0005420:intron | 30.0% |
| TTTGGTAAGGTCATATTTAG+AGG | + | chr1_1:7972765-7972784 | Msa0005420:intron | 30.0% | |
| AAACCAATAAGGAGAACAAA+GGG | - | chr1_1:7972909-7972928 | None:intergenic | 30.0% | |
| AAAACCAATAAGGAGAACAA+AGG | - | chr1_1:7972910-7972929 | None:intergenic | 30.0% | |
| GTGAAAAGAGAAAACCAATA+AGG | - | chr1_1:7972920-7972939 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTGAGTTTTTGAT+AGG | + | chr1_1:7973023-7973042 | Msa0005420:intron | 30.0% |
| CTTTCTTCTATAATATGCCT+AGG | - | chr1_1:7973052-7973071 | None:intergenic | 30.0% | |
| AGGCATATTATAGAAGAAAG+TGG | + | chr1_1:7973052-7973071 | Msa0005420:intron | 30.0% | |
| GGCATATTATAGAAGAAAGT+GGG | + | chr1_1:7973053-7973072 | Msa0005420:intron | 30.0% | |
| GCATATTATAGAAGAAAGTG+GGG | + | chr1_1:7973054-7973073 | Msa0005420:intron | 30.0% | |
| AATATACTGTGAGTAGAAAG+TGG | + | chr1_1:7973148-7973167 | Msa0005420:intron | 30.0% | |
| ATATACTGTGAGTAGAAAGT+GGG | + | chr1_1:7973149-7973168 | Msa0005420:intron | 30.0% | |
| GTTATGAGATAATATCTGTC+TGG | + | chr1_1:7973205-7973224 | Msa0005420:intron | 30.0% | |
| CATAGAAGCTCTACAATATA+AGG | - | chr1_1:7973261-7973280 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGAGTTCTATCAT+TGG | + | chr1_1:7973322-7973341 | Msa0005420:intron | 30.0% |
| ! | TCTCATTTTCATATTGCATC+AGG | + | chr1_1:7973366-7973385 | Msa0005420:intron | 30.0% |
| ! | CTCATTTTCATATTGCATCA+GGG | + | chr1_1:7973367-7973386 | Msa0005420:intron | 30.0% |
| ! | TCATTTTCATATTGCATCAG+GGG | + | chr1_1:7973368-7973387 | Msa0005420:intron | 30.0% |
| !!! | CTTTTAGTTTTAGTGGTAGT+GGG | + | chr1_1:7973401-7973420 | Msa0005420:intron | 30.0% |
| !!! | TTTTAGTTTTAGTGGTAGTG+GGG | + | chr1_1:7973402-7973421 | Msa0005420:intron | 30.0% |
| GATATGAAACATACTCTTGT+GGG | - | chr1_1:7973449-7973468 | None:intergenic | 30.0% | |
| TGAAACACATTTGTAGAAAC+AGG | + | chr1_1:7973576-7973595 | Msa0005420:intron | 30.0% | |
| TTATTCTATTCTATGCGACT+TGG | + | chr1_1:7973830-7973849 | Msa0005420:intron | 30.0% | |
| ATTTATGTTGCCTTAACTTC+AGG | + | chr1_1:7973879-7973898 | Msa0005420:intron | 30.0% | |
| CAGGTATTATGTTAGATCAT+TGG | + | chr1_1:7973898-7973917 | Msa0005420:intron | 30.0% | |
| ! | AGTCAGTGGTACATTTTTAA+GGG | + | chr1_1:7974042-7974061 | Msa0005420:intron | 30.0% |
| !! | ATTTTTAAGGGATGGGTATT+GGG | + | chr1_1:7974054-7974073 | Msa0005420:intron | 30.0% |
| GAATGTGAAGTTTATTTGTG+TGG | - | chr1_1:7974104-7974123 | None:intergenic | 30.0% | |
| AAACTTCACATTCTCCTTAT+AGG | + | chr1_1:7974111-7974130 | Msa0005420:intron | 30.0% | |
| ! | GGTATTTTCACAAACCTATA+AGG | - | chr1_1:7974128-7974147 | None:intergenic | 30.0% |
| ATGAAGTTATACTTGGAAAG+TGG | - | chr1_1:7974149-7974168 | None:intergenic | 30.0% | |
| TTCACTTGATTTCTGAACTT+GGG | + | chr1_1:7974251-7974270 | Msa0005420:intron | 30.0% | |
| ACACACACTCTGAATTATAT+GGG | - | chr1_1:7974319-7974338 | None:intergenic | 30.0% | |
| ! | TCGAAAATGATTGATGATTG+AGG | + | chr1_1:7974392-7974411 | Msa0005420:three_prime_UTR | 30.0% |
| !! | GTTTTGAATTGAAACGGTGA+AGG | - | chr1_1:7971792-7971811 | None:intergenic | 35.0% |
| CCTGAAATAGAAGAAGAACA+TGG | - | chr1_1:7971988-7972007 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTCTATTTC+AGG | + | chr1_1:7971985-7972004 | Msa0005420:intron | 35.0% | |
| ACAACTTAAAATTCTCGCAC+AGG | - | chr1_1:7972430-7972449 | None:intergenic | 35.0% | |
| ! | GAAGACAAATTTGGAATGTG+TGG | + | chr1_1:7972560-7972579 | Msa0005420:intron | 35.0% |
| ! | TGAAACTGAAAAGGAGGTAT+TGG | + | chr1_1:7972597-7972616 | Msa0005420:intron | 35.0% |
| !!! | GATTTTTTTCTTTAGGTGGG+AGG | + | chr1_1:7972687-7972706 | Msa0005420:intron | 35.0% |
| AAGGTCATATTTAGAGGTAG+TGG | + | chr1_1:7972771-7972790 | Msa0005420:intron | 35.0% | |
| TTTCCCTTTGTTCTCCTTAT+TGG | + | chr1_1:7972903-7972922 | Msa0005420:intron | 35.0% | |
| ! | AACTTCCATTTTCTCCCATA+TGG | - | chr1_1:7973080-7973099 | None:intergenic | 35.0% |
| ! | ATTCTAGGAGAGTATGTTAG+AGG | + | chr1_1:7973120-7973139 | Msa0005420:intron | 35.0% |
| TATACTGTGAGTAGAAAGTG+GGG | + | chr1_1:7973150-7973169 | Msa0005420:intron | 35.0% | |
| GAGCATTATTGTTAACGAGT+TGG | + | chr1_1:7973183-7973202 | Msa0005420:intron | 35.0% | |
| GGTATTAGAGTCTCTAACTT+TGG | + | chr1_1:7973226-7973245 | Msa0005420:intron | 35.0% | |
| CCACTACCACTAAAACTAAA+AGG | - | chr1_1:7973403-7973422 | None:intergenic | 35.0% | |
| !!! | CCTTTTAGTTTTAGTGGTAG+TGG | + | chr1_1:7973400-7973419 | Msa0005420:intron | 35.0% |
| !!! | TTTAGTTTTAGTGGTAGTGG+GGG | + | chr1_1:7973403-7973422 | Msa0005420:intron | 35.0% |
| CGATATGAAACATACTCTTG+TGG | - | chr1_1:7973450-7973469 | None:intergenic | 35.0% | |
| TTACTTTATTGGTCAGTCAG+TGG | + | chr1_1:7974028-7974047 | Msa0005420:intron | 35.0% | |
| ! | CAGTCAGTGGTACATTTTTA+AGG | + | chr1_1:7974041-7974060 | Msa0005420:intron | 35.0% |
| !! | AGTGGTACATTTTTAAGGGA+TGG | + | chr1_1:7974046-7974065 | Msa0005420:intron | 35.0% |
| !! | GTGGTACATTTTTAAGGGAT+GGG | + | chr1_1:7974047-7974066 | Msa0005420:intron | 35.0% |
| !! | CATTTTTAAGGGATGGGTAT+TGG | + | chr1_1:7974053-7974072 | Msa0005420:intron | 35.0% |
| AATAATCAGCAAACAGCAAC+AGG | - | chr1_1:7974202-7974221 | None:intergenic | 35.0% | |
| GTTCACTTGATTTCTGAACT+TGG | + | chr1_1:7974250-7974269 | Msa0005420:intron | 35.0% | |
| GACACACACTCTGAATTATA+TGG | - | chr1_1:7974320-7974339 | None:intergenic | 35.0% | |
| !!! | GAGTGTGTGTCTTTTGAAAT+TGG | + | chr1_1:7974329-7974348 | Msa0005420:three_prime_UTR | 35.0% |
| AATTGAAACGGTGAAGGATG+TGG | - | chr1_1:7971786-7971805 | None:intergenic | 40.0% | |
| CTAGTGAATTCGCCATTGTT+AGG | - | chr1_1:7971814-7971833 | None:intergenic | 40.0% | |
| ! | TTAGGGTTTTTACCAAAGCG+AGG | - | chr1_1:7971904-7971923 | None:intergenic | 40.0% |
| TGTTGTAGTGTCTGTTGTTG+TGG | - | chr1_1:7972046-7972065 | None:intergenic | 40.0% | |
| !!! | TGCTGCCTGATGTTTTAGAA+CGG | + | chr1_1:7972998-7973017 | Msa0005420:intron | 40.0% |
| !! | AACACCCGTTCTAAAACATC+AGG | - | chr1_1:7973006-7973025 | None:intergenic | 40.0% |
| ! | GAGTTTTTGATAGGACACCT+AGG | + | chr1_1:7973032-7973051 | Msa0005420:intron | 40.0% |
| AGTTCTATCATTGGTCCTCA+TGG | + | chr1_1:7973331-7973350 | Msa0005420:intron | 40.0% | |
| AAAGCAACATCCCAAGATAC+TGG | - | chr1_1:7973964-7973983 | None:intergenic | 40.0% | |
| ! | AGTATCTTGGGATGTTGCTT+TGG | + | chr1_1:7973963-7973982 | Msa0005420:three_prime_UTR | 40.0% |
| CACTCTGAATTATATGGGTC+TGG | - | chr1_1:7974314-7974333 | None:intergenic | 40.0% | |
| AAAGATCCCTCTCTGTTGCT+CGG | - | chr1_1:7971712-7971731 | None:intergenic | 45.0% | |
| TTCAGCAACAACAGCAACAG+AGG | + | chr1_1:7972071-7972090 | Msa0005420:CDS | 45.0% | |
| ACAACAGCAACAGAGGAGAA+AGG | + | chr1_1:7972078-7972097 | Msa0005420:CDS | 45.0% | |
| TAAATGGTGTGCTAGGGTTG+TGG | + | chr1_1:7972513-7972532 | Msa0005420:intron | 45.0% | |
| AAATGGTGTGCTAGGGTTGT+GGG | + | chr1_1:7972514-7972533 | Msa0005420:intron | 45.0% | |
| TTTCTTTAGGTGGGAGGGAA+TGG | + | chr1_1:7972693-7972712 | Msa0005420:intron | 45.0% | |
| !! | TGGGAGGGAATGGATTACTA+TGG | + | chr1_1:7972703-7972722 | Msa0005420:intron | 45.0% |
| !! | GGGAGGGAATGGATTACTAT+GGG | + | chr1_1:7972704-7972723 | Msa0005420:intron | 45.0% |
| !! | GGAGGGAATGGATTACTATG+GGG | + | chr1_1:7972705-7972724 | Msa0005420:intron | 45.0% |
| !!! | GCTGCCTGATGTTTTAGAAC+GGG | + | chr1_1:7972999-7973018 | Msa0005420:intron | 45.0% |
| TAGAAGAAAGTGGGGCCATA+TGG | + | chr1_1:7973062-7973081 | Msa0005420:intron | 45.0% | |
| AGAAGAAAGTGGGGCCATAT+GGG | + | chr1_1:7973063-7973082 | Msa0005420:intron | 45.0% | |
| CCTAGAATCTAACTCTGCGT+CGG | - | chr1_1:7973108-7973127 | None:intergenic | 45.0% | |
| TGTGAGTAGAAAGTGGGGAA+GGG | + | chr1_1:7973155-7973174 | Msa0005420:intron | 45.0% | |
| AGATACATGGGTATGCCATG+AGG | - | chr1_1:7973349-7973368 | None:intergenic | 45.0% | |
| ATGCATCTGTGGTGTATGGT+AGG | + | chr1_1:7973731-7973750 | Msa0005420:intron | 45.0% | |
| TAGAGCCAGACCAGTATCTT+GGG | + | chr1_1:7973951-7973970 | Msa0005420:three_prime_UTR | 45.0% | |
| AACATCCCAAGATACTGGTC+TGG | - | chr1_1:7973959-7973978 | None:intergenic | 45.0% | |
| !! | AAATTAAAATGAAAAAAAAA+AGG | - | chr1_1:7971937-7971956 | None:intergenic | 5.0% |
| CATGTTCCGAGCAACAGAGA+GGG | + | chr1_1:7971703-7971722 | Msa0005420:five_prime_UTR | 50.0% | |
| GAGCAACAGAGAGGGATCTT+TGG | + | chr1_1:7971711-7971730 | Msa0005420:five_prime_UTR | 50.0% | |
| CGGTGAAGGATGTGGCAATA+CGG | - | chr1_1:7971778-7971797 | None:intergenic | 50.0% | |
| CACTAGAGCAATCTCGTCCA+TGG | + | chr1_1:7971828-7971847 | Msa0005420:CDS | 50.0% | |
| CCAACAAAGGAACTGCGTAG+AGG | - | chr1_1:7971856-7971875 | None:intergenic | 50.0% | |
| CCTCTACGCAGTTCCTTTGT+TGG | + | chr1_1:7971853-7971872 | Msa0005420:CDS | 50.0% | |
| CGCATTTCATGTCCTCGCTT+TGG | + | chr1_1:7971889-7971908 | Msa0005420:CDS | 50.0% | |
| AGCACACAACAACAAGCGGT+AGG | - | chr1_1:7972982-7973001 | None:intergenic | 50.0% | |
| AGGCAGCACACAACAACAAG+CGG | - | chr1_1:7972986-7973005 | None:intergenic | 50.0% | |
| TGGGGCCATATGGGAGAAAA+TGG | + | chr1_1:7973072-7973091 | Msa0005420:intron | 50.0% | |
| CCGACGCAGAGTTAGATTCT+AGG | + | chr1_1:7973105-7973124 | Msa0005420:intron | 50.0% | |
| CTGTGAGTAGAAAGTGGGGA+AGG | + | chr1_1:7973154-7973173 | Msa0005420:intron | 50.0% | |
| TGCGACATGAGCACAATTGC+AGG | - | chr1_1:7973516-7973535 | None:intergenic | 50.0% | |
| !! | TTGGCATTGGCATGCATCTG+TGG | + | chr1_1:7973720-7973739 | Msa0005420:intron | 50.0% |
| TGGCATGCATCTGTGGTGTA+TGG | + | chr1_1:7973727-7973746 | Msa0005420:intron | 50.0% | |
| !!! | TGGTCTGGCTCTACGTTTTG+TGG | - | chr1_1:7973944-7973963 | None:intergenic | 50.0% |
| GTAGAGCCAGACCAGTATCT+TGG | + | chr1_1:7973950-7973969 | Msa0005420:three_prime_UTR | 50.0% | |
| CCTCTCTGTTGCTCGGAACA+TGG | - | chr1_1:7971705-7971724 | None:intergenic | 55.0% | |
| CCATGTTCCGAGCAACAGAG+AGG | + | chr1_1:7971702-7971721 | Msa0005420:five_prime_UTR | 55.0% | |
| GGAACTGCGTAGAGGAACCA+TGG | - | chr1_1:7971848-7971867 | None:intergenic | 55.0% | |
| GTGTGCTAGGGTTGTGGGTA+GGG | + | chr1_1:7972519-7972538 | Msa0005420:intron | 55.0% | |
| CACAACAACAAGCGGTAGGC+AGG | - | chr1_1:7972978-7972997 | None:intergenic | 55.0% | |
| !! | GATGGGTATTGGGCAGTCAG+CGG | + | chr1_1:7974064-7974083 | Msa0005420:intron | 55.0% |
| GGTGTGCTAGGGTTGTGGGT+AGG | + | chr1_1:7972518-7972537 | Msa0005420:intron | 60.0% | |
| TGCTAGGGTTGTGGGTAGGG+TGG | + | chr1_1:7972522-7972541 | Msa0005420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7971695 | 7974462 | 7971695 | ID=Msa0005420;Name=Msa0005420 |
| chr1_1 | mRNA | 7971695 | 7974462 | 7971695 | ID=Msa0005420-mRNA-1;Parent=Msa0005420;Name=Msa0005420-mRNA-1;_AED=0.29;_eAED=0.29;_QI=123|1|1|1|0.33|0.25|4|276|64 |
| chr1_1 | exon | 7971695 | 7971910 | 7971695 | ID=Msa0005420-mRNA-1:exon:2819;Parent=Msa0005420-mRNA-1 |
| chr1_1 | exon | 7972007 | 7972128 | 7972007 | ID=Msa0005420-mRNA-1:exon:2820;Parent=Msa0005420-mRNA-1 |
| chr1_1 | exon | 7973901 | 7973984 | 7973901 | ID=Msa0005420-mRNA-1:exon:2821;Parent=Msa0005420-mRNA-1 |
| chr1_1 | exon | 7974291 | 7974462 | 7974291 | ID=Msa0005420-mRNA-1:exon:2822;Parent=Msa0005420-mRNA-1 |
| chr1_1 | five_prime_UTR | 7971695 | 7971817 | 7971695 | ID=Msa0005420-mRNA-1:five_prime_utr;Parent=Msa0005420-mRNA-1 |
| chr1_1 | CDS | 7971818 | 7971910 | 7971818 | ID=Msa0005420-mRNA-1:cds;Parent=Msa0005420-mRNA-1 |
| chr1_1 | CDS | 7972007 | 7972108 | 7972007 | ID=Msa0005420-mRNA-1:cds;Parent=Msa0005420-mRNA-1 |
| chr1_1 | three_prime_UTR | 7972109 | 7972128 | 7972109 | ID=Msa0005420-mRNA-1:three_prime_utr;Parent=Msa0005420-mRNA-1 |
| chr1_1 | three_prime_UTR | 7973901 | 7973984 | 7973901 | ID=Msa0005420-mRNA-1:three_prime_utr;Parent=Msa0005420-mRNA-1 |
| chr1_1 | three_prime_UTR | 7974291 | 7974462 | 7974291 | ID=Msa0005420-mRNA-1:three_prime_utr;Parent=Msa0005420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
