Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005420 | Msa0005430 | 0.967099 | 8.187592e-127 | -8.615850e-47 |
| Msa0005430 | Msa0099800 | 0.856564 | 2.953363e-62 | -8.615850e-47 |
| Msa0005430 | Msa0189320 | 0.804795 | 1.820122e-49 | -8.615850e-47 |
| Msa0005430 | Msa0309770 | 0.810688 | 1.017781e-50 | -8.615850e-47 |
| Msa0005430 | Msa0577500 | 0.803593 | 3.236765e-49 | -8.615850e-47 |
| Msa0005430 | Msa0602390 | 0.814681 | 1.361460e-51 | -8.615850e-47 |
| Msa0005430 | Msa0607050 | 0.811997 | 5.289796e-51 | -8.615850e-47 |
| Msa0005430 | Msa0663390 | 0.803614 | 3.204433e-49 | -8.615850e-47 |
| Msa0005430 | Msa0688960 | 0.804079 | 2.565730e-49 | -8.615850e-47 |
| Msa0005430 | Msa0709400 | 0.808755 | 2.650214e-50 | -8.615850e-47 |
| Msa0005430 | Msa0945970 | 0.820869 | 5.460131e-53 | -8.615850e-47 |
| Msa0005430 | Msa0963270 | 0.804232 | 2.385024e-49 | -8.615850e-47 |
| Msa0005430 | Msa1075540 | 0.807157 | 5.798429e-50 | -8.615850e-47 |
| Msa0005430 | Msa1121440 | 0.813565 | 2.400657e-51 | -8.615850e-47 |
| Msa0005430 | Msa1124960 | 0.807905 | 4.021776e-50 | -8.615850e-47 |
| Msa0005430 | Msa1140210 | 0.810161 | 1.322779e-50 | -8.615850e-47 |
| Msa0005430 | Msa1142020 | 0.809797 | 1.584622e-50 | -8.615850e-47 |
| Msa0005430 | Msa1147280 | 0.831951 | 1.247748e-55 | -8.615850e-47 |
| Msa0005430 | Msa1244600 | 0.826136 | 3.200995e-54 | -8.615850e-47 |
| Msa0005430 | Msa1279400 | 0.801341 | 9.424052e-49 | -8.615850e-47 |
| Msa0005430 | Msa1306840 | 0.802398 | 5.717401e-49 | -8.615850e-47 |
| Msa0005430 | Msa1370070 | -0.808544 | 2.940002e-50 | -8.615850e-47 |
| Msa0005430 | Msa1382620 | 0.800417 | 1.455296e-48 | -8.615850e-47 |
| Msa0005430 | Msa1452240 | 0.809976 | 1.449679e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005430 | MtrunA17_Chr1g0150441 | 98.438 | 64 | 1 | 0 | 1 | 64 | 1 | 64 | 2.14e-40 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005430 | AT5G10745.1 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
| Msa0005430 | AT5G10745.3 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
| Msa0005430 | AT5G10745.2 | 66.667 | 39 | 13 | 0 | 9 | 47 | 8 | 46 | 3.49e-12 | 55.1 |
Find 30 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACACACTCTGAATTATA+TGG | 0.262823 | 1_1:-8015437 | None:intergenic |
| TTCTTCTATTTCAGGTGTAT+TGG | 0.265942 | 1_1:+8012763 | Msa0005430:intron |
| CCTCTACGCAGTTCCTTTGT+TGG | 0.316353 | 1_1:+8012624 | Msa0005430:CDS |
| CGCATTTCATGTCCTCGCTT+TGG | 0.342769 | 1_1:+8012660 | Msa0005430:CDS |
| TGCTCGGAACATGGAGTGTT+CGG | 0.344526 | 1_1:-8012464 | None:intergenic |
| CAGGTATTATGTTAGATCAT+TGG | 0.345785 | 1_1:+8015018 | Msa0005430:intron |
| CTAGTGAATTCGCCATTGTT+AGG | 0.378454 | 1_1:-8012582 | None:intergenic |
| GAGCAACAGAGAGGGATCTT+TGG | 0.379779 | 1_1:+8012482 | Msa0005430:five_prime_UTR |
| AGTATCTTGGGATGTTGCTT+TGG | 0.408343 | 1_1:+8015083 | Msa0005430:three_prime_UTR |
| CACTCTGAATTATATGGGTC+TGG | 0.418705 | 1_1:-8015431 | None:intergenic |
| CCTCTCTGTTGCTCGGAACA+TGG | 0.451735 | 1_1:-8012473 | None:intergenic |
| GCTCGGAACATGGAGTGTTC+GGG | 0.452606 | 1_1:-8012463 | None:intergenic |
| GTAGAGCCAGACCAGTATCT+TGG | 0.463781 | 1_1:+8015070 | Msa0005430:three_prime_UTR |
| TGTTGTAGTGTCTGTTGTTG+TGG | 0.489081 | 1_1:-8012813 | None:intergenic |
| TAGAGCCAGACCAGTATCTT+GGG | 0.505768 | 1_1:+8015071 | Msa0005430:three_prime_UTR |
| CGGTGAAGGATGTGGCAATA+CGG | 0.516675 | 1_1:-8012546 | None:intergenic |
| AAAGCAACATCCCAAGATAC+TGG | 0.517738 | 1_1:-8015081 | None:intergenic |
| ACACACACTCTGAATTATAT+GGG | 0.523466 | 1_1:-8015436 | None:intergenic |
| AACATCCCAAGATACTGGTC+TGG | 0.525580 | 1_1:-8015076 | None:intergenic |
| CACTAGAGCAATCTCGTCCA+TGG | 0.558619 | 1_1:+8012599 | Msa0005430:CDS |
| AATTGAAACGGTGAAGGATG+TGG | 0.561795 | 1_1:-8012554 | None:intergenic |
| ACAACAGCAACAGAGGAGAA+AGG | 0.567130 | 1_1:+8012848 | Msa0005430:CDS |
| AAAGATCCCTCTCTGTTGCT+CGG | 0.569041 | 1_1:-8012480 | None:intergenic |
| TTCAGCAACAACAGCAACAG+AGG | 0.580372 | 1_1:+8012841 | Msa0005430:CDS |
| TCGAAAATGATTGATGATTG+AGG | 0.595475 | 1_1:+8015512 | Msa0005430:three_prime_UTR |
| TTCAATTCAAAACCTAACAA+TGG | 0.603527 | 1_1:+8012570 | Msa0005430:exon |
| CATGTTCCGAGCAACAGAGA+GGG | 0.640554 | 1_1:+8012474 | Msa0005430:five_prime_UTR |
| GGAACTGCGTAGAGGAACCA+TGG | 0.645531 | 1_1:-8012616 | None:intergenic |
| CCAACAAAGGAACTGCGTAG+AGG | 0.689308 | 1_1:-8012624 | None:intergenic |
| CCATGTTCCGAGCAACAGAG+AGG | 0.703225 | 1_1:+8012473 | Msa0005430:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATTTTTGTTTTAAT+AGG | + | chr1_1:8014778-8014797 | Msa0005430:intron | 10.0% |
| !! | AAATTTATAAATACATATGT+TGG | + | chr1_1:8014821-8014840 | Msa0005430:intron | 10.0% |
| !! | TGAAAAAAAAAGGAAAAATT+GGG | - | chr1_1:8012698-8012717 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAAGGAAAAAT+TGG | - | chr1_1:8012699-8012718 | None:intergenic | 15.0% |
| !! | AATTTCACATTTCAAAAATT+AGG | - | chr1_1:8012732-8012751 | None:intergenic | 15.0% |
| !!! | AATTTTAAGTTGTTAAATTG+AGG | + | chr1_1:8013206-8013225 | Msa0005430:intron | 15.0% |
| !!! | AATTTTAAGTTGTTAAATTG+AGG | + | chr1_1:8013206-8013225 | Msa0005430:intron | 15.0% |
| !!! | CATAAAAGATTTTTTTCTTT+AGG | + | chr1_1:8013800-8013819 | Msa0005430:intron | 15.0% |
| !! | TATGAAAATGAGTTATAAAA+TGG | + | chr1_1:8014922-8014941 | Msa0005430:intron | 15.0% |
| !! | AAGTTATCAATTTACTTTAT+TGG | + | chr1_1:8015137-8015156 | Msa0005430:intron | 15.0% |
| !! | TTAGTAGAATTTGAAGAAAT+TGG | + | chr1_1:8013011-8013030 | Msa0005430:intron | 20.0% |
| !! | AAATTGAGGTTATATTAAGA+AGG | + | chr1_1:8013220-8013239 | Msa0005430:intron | 20.0% |
| !! | TTAGTAGAATTTGAAGAAAT+TGG | + | chr1_1:8013011-8013030 | Msa0005430:intron | 20.0% |
| !! | AAATTGAGGTTATATTAAGA+AGG | + | chr1_1:8013220-8013239 | Msa0005430:intron | 20.0% |
| !! | TTGCATGTAATTATGTTAAA+TGG | + | chr1_1:8013617-8013636 | Msa0005430:intron | 20.0% |
| !!! | AAAAGATTTTTTTCTTTAGG+TGG | + | chr1_1:8013803-8013822 | Msa0005430:intron | 20.0% |
| !!! | AAAGATTTTTTTCTTTAGGT+GGG | + | chr1_1:8013804-8013823 | Msa0005430:intron | 20.0% |
| !!! | TTTGTCATAAACTTAGTTTT+TGG | + | chr1_1:8013867-8013886 | Msa0005430:intron | 20.0% |
| !!! | ATACTTGTTTTGATAAAAGA+AGG | - | chr1_1:8013932-8013951 | None:intergenic | 20.0% |
| !!! | TTCCTCTGTTTTTATTTTTT+AGG | + | chr1_1:8013991-8014010 | Msa0005430:intron | 20.0% |
| !! | AACCTAAAAAATAAAAACAG+AGG | - | chr1_1:8013996-8014015 | None:intergenic | 20.0% |
| !! | TTAAGCTTGAAATATATACA+TGG | + | chr1_1:8014069-8014088 | Msa0005430:intron | 20.0% |
| !! | AATATGAAAATGAGATACAT+GGG | - | chr1_1:8014481-8014500 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTAATAGGAAAAG+AGG | + | chr1_1:8014786-8014805 | Msa0005430:intron | 20.0% |
| !!! | TAAAGTAAATTGATAACTTG+TGG | - | chr1_1:8015136-8015155 | None:intergenic | 20.0% |
| !! | ATATCATATCTGTAATAAAC+AGG | - | chr1_1:8015400-8015419 | None:intergenic | 20.0% |
| !!! | TGTTAGGTTTTGAATTGAAA+CGG | - | chr1_1:8012569-8012588 | None:intergenic | 25.0% |
| ! | TTCAATTCAAAACCTAACAA+TGG | + | chr1_1:8012570-8012589 | Msa0005430:exon | 25.0% |
| ! | ATCAAAAGAAAAACCAACAA+AGG | - | chr1_1:8012640-8012659 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAAATTGGGTTA+GGG | - | chr1_1:8012692-8012711 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAAAATTGGGTT+AGG | - | chr1_1:8012693-8012712 | None:intergenic | 25.0% |
| ! | TGCTTAATGTTGTTACAAAT+AGG | + | chr1_1:8012968-8012987 | Msa0005430:intron | 25.0% |
| ! | TTAATGTTGTTACAAATAGG+AGG | + | chr1_1:8012971-8012990 | Msa0005430:intron | 25.0% |
| !!! | ACAATACCGATTATATGTTT+TGG | + | chr1_1:8013141-8013160 | Msa0005430:intron | 25.0% |
| ! | CCAAAACCAAAACATATAAT+CGG | - | chr1_1:8013150-8013169 | None:intergenic | 25.0% |
| ! | TGCTTAATGTTGTTACAAAT+AGG | + | chr1_1:8012968-8012987 | Msa0005430:intron | 25.0% |
| ! | TTAATGTTGTTACAAATAGG+AGG | + | chr1_1:8012971-8012990 | Msa0005430:intron | 25.0% |
| !!! | ACAATACCGATTATATGTTT+TGG | + | chr1_1:8013141-8013160 | Msa0005430:intron | 25.0% |
| ! | CCAAAACCAAAACATATAAT+CGG | - | chr1_1:8013150-8013169 | None:intergenic | 25.0% |
| ! | TGATATTGTTGAAACTGAAA+AGG | + | chr1_1:8013708-8013727 | Msa0005430:intron | 25.0% |
| !!! | CATAAACTTAGTTTTTGGTA+AGG | + | chr1_1:8013872-8013891 | Msa0005430:intron | 25.0% |
| ! | AACAAGTATTAAAGAACTTG+TGG | + | chr1_1:8013943-8013962 | Msa0005430:intron | 25.0% |
| ! | CAATATGAAAATGAGATACA+TGG | - | chr1_1:8014482-8014501 | None:intergenic | 25.0% |
| !!! | CAATATCCTTTTAGTTTTAG+TGG | + | chr1_1:8014514-8014533 | Msa0005430:intron | 25.0% |
| !! | AGATAAAAGATTTTCCAAAG+AGG | + | chr1_1:8014746-8014765 | Msa0005430:intron | 25.0% |
| ! | CAAAAAATTTCTAACCTCTT+TGG | - | chr1_1:8014763-8014782 | None:intergenic | 25.0% |
| ! | ATAAATACATATGTTGGCAT+TGG | + | chr1_1:8014827-8014846 | Msa0005430:intron | 25.0% |
| !! | TCATCTTTTGCTTAAGAATT+AGG | + | chr1_1:8014879-8014898 | Msa0005430:intron | 25.0% |
| ! | TAACATAATACCTGAAGTTA+AGG | - | chr1_1:8015012-8015031 | None:intergenic | 25.0% |
| ! | ACATTAGATGAAGTTATACT+TGG | - | chr1_1:8015276-8015295 | None:intergenic | 25.0% |
| ! | AGAGAATATGCATATAATTG+TGG | + | chr1_1:8015348-8015367 | Msa0005430:intron | 25.0% |
| ! | TTCTTCTATTTCAGGTGTAT+TGG | + | chr1_1:8012763-8012782 | Msa0005430:intron | 30.0% |
| !!! | CATATAGCTGTTGTTTTGAA+AGG | + | chr1_1:8012920-8012939 | Msa0005430:intron | 30.0% |
| !!! | CCGATTATATGTTTTGGTTT+TGG | + | chr1_1:8013147-8013166 | Msa0005430:intron | 30.0% |
| !!! | CATATAGCTGTTGTTTTGAA+AGG | + | chr1_1:8012920-8012939 | Msa0005430:intron | 30.0% |
| !!! | CCGATTATATGTTTTGGTTT+TGG | + | chr1_1:8013147-8013166 | Msa0005430:intron | 30.0% |
| ATTATGTTAAATGGTGTGCT+AGG | + | chr1_1:8013626-8013645 | Msa0005430:intron | 30.0% | |
| TTATGTTAAATGGTGTGCTA+GGG | + | chr1_1:8013627-8013646 | Msa0005430:intron | 30.0% | |
| GATCATGTAGAAGACAAATT+TGG | + | chr1_1:8013671-8013690 | Msa0005430:intron | 30.0% | |
| TATTGTTGAAACTGAAAAGG+AGG | + | chr1_1:8013711-8013730 | Msa0005430:intron | 30.0% | |
| GACAAAAACAAATATTGCAC+AGG | - | chr1_1:8013767-8013786 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCTTTAGGTGGGA+GGG | + | chr1_1:8013808-8013827 | Msa0005430:intron | 30.0% |
| TTTGGTAAGGTCATATTTAG+AGG | + | chr1_1:8013885-8013904 | Msa0005430:intron | 30.0% | |
| AAACCAATAAGGAGAACAAA+GGG | - | chr1_1:8014029-8014048 | None:intergenic | 30.0% | |
| AAAACCAATAAGGAGAACAA+AGG | - | chr1_1:8014030-8014049 | None:intergenic | 30.0% | |
| GTGAAAAGAGAAAACCAATA+AGG | - | chr1_1:8014040-8014059 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTGAGTTTTTGAT+AGG | + | chr1_1:8014143-8014162 | Msa0005430:intron | 30.0% |
| CTTTCTTCTATAATATGCCT+AGG | - | chr1_1:8014172-8014191 | None:intergenic | 30.0% | |
| AGGCATATTATAGAAGAAAG+TGG | + | chr1_1:8014172-8014191 | Msa0005430:intron | 30.0% | |
| GGCATATTATAGAAGAAAGT+GGG | + | chr1_1:8014173-8014192 | Msa0005430:intron | 30.0% | |
| GCATATTATAGAAGAAAGTG+GGG | + | chr1_1:8014174-8014193 | Msa0005430:intron | 30.0% | |
| AATATACTGTGAGTAGAAAG+TGG | + | chr1_1:8014268-8014287 | Msa0005430:intron | 30.0% | |
| ATATACTGTGAGTAGAAAGT+GGG | + | chr1_1:8014269-8014288 | Msa0005430:intron | 30.0% | |
| GTTATGAGATAATATCTGTC+TGG | + | chr1_1:8014325-8014344 | Msa0005430:intron | 30.0% | |
| CATAGAAGCTCTACAATATA+AGG | - | chr1_1:8014381-8014400 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGAGTTCTATCAT+TGG | + | chr1_1:8014442-8014461 | Msa0005430:intron | 30.0% |
| ! | TCTCATTTTCATATTGCATC+AGG | + | chr1_1:8014486-8014505 | Msa0005430:intron | 30.0% |
| ! | CTCATTTTCATATTGCATCA+GGG | + | chr1_1:8014487-8014506 | Msa0005430:intron | 30.0% |
| ! | TCATTTTCATATTGCATCAG+GGG | + | chr1_1:8014488-8014507 | Msa0005430:intron | 30.0% |
| !!! | CTTTTAGTTTTAGTGGTAGT+GGG | + | chr1_1:8014521-8014540 | Msa0005430:intron | 30.0% |
| !!! | TTTTAGTTTTAGTGGTAGTG+GGG | + | chr1_1:8014522-8014541 | Msa0005430:intron | 30.0% |
| GATATGAAACATACTCTTGT+GGG | - | chr1_1:8014569-8014588 | None:intergenic | 30.0% | |
| TGAAACACATTTGTAGAAAC+AGG | + | chr1_1:8014696-8014715 | Msa0005430:intron | 30.0% | |
| TTATTCTATTCTATGCGACT+TGG | + | chr1_1:8014950-8014969 | Msa0005430:intron | 30.0% | |
| ATTTATGTTGCCTTAACTTC+AGG | + | chr1_1:8014999-8015018 | Msa0005430:intron | 30.0% | |
| CAGGTATTATGTTAGATCAT+TGG | + | chr1_1:8015018-8015037 | Msa0005430:intron | 30.0% | |
| ! | AGTCAGTGGTACATTTTTAA+GGG | + | chr1_1:8015162-8015181 | Msa0005430:intron | 30.0% |
| !! | ATTTTTAAGGGATGGGTATT+GGG | + | chr1_1:8015174-8015193 | Msa0005430:intron | 30.0% |
| GAATGTGAAGTTTATTTGTG+TGG | - | chr1_1:8015224-8015243 | None:intergenic | 30.0% | |
| AAACTTCACATTCTCCTTAT+AGG | + | chr1_1:8015231-8015250 | Msa0005430:intron | 30.0% | |
| ! | GGTATTTTCACAAACCTATA+AGG | - | chr1_1:8015248-8015267 | None:intergenic | 30.0% |
| ATGAAGTTATACTTGGAAAG+TGG | - | chr1_1:8015269-8015288 | None:intergenic | 30.0% | |
| TTCACTTGATTTCTGAACTT+GGG | + | chr1_1:8015371-8015390 | Msa0005430:intron | 30.0% | |
| ACACACACTCTGAATTATAT+GGG | - | chr1_1:8015439-8015458 | None:intergenic | 30.0% | |
| ! | TCGAAAATGATTGATGATTG+AGG | + | chr1_1:8015512-8015531 | Msa0005430:three_prime_UTR | 30.0% |
| !! | GTTTTGAATTGAAACGGTGA+AGG | - | chr1_1:8012563-8012582 | None:intergenic | 35.0% |
| CCTGAAATAGAAGAAGAACA+TGG | - | chr1_1:8012758-8012777 | None:intergenic | 35.0% | |
| CCATGTTCTTCTTCTATTTC+AGG | + | chr1_1:8012755-8012774 | Msa0005430:intron | 35.0% | |
| ACAACTTAAAATTCTCGCAC+AGG | - | chr1_1:8013199-8013218 | None:intergenic | 35.0% | |
| ACAACTTAAAATTCTCGCAC+AGG | - | chr1_1:8013199-8013218 | None:intergenic | 35.0% | |
| ! | GAAGACAAATTTGGAATGTG+TGG | + | chr1_1:8013680-8013699 | Msa0005430:intron | 35.0% |
| ! | TGAAACTGAAAAGGAGGTAT+TGG | + | chr1_1:8013717-8013736 | Msa0005430:intron | 35.0% |
| !!! | GATTTTTTTCTTTAGGTGGG+AGG | + | chr1_1:8013807-8013826 | Msa0005430:intron | 35.0% |
| AAGGTCATATTTAGAGGTAG+TGG | + | chr1_1:8013891-8013910 | Msa0005430:intron | 35.0% | |
| TTTCCCTTTGTTCTCCTTAT+TGG | + | chr1_1:8014023-8014042 | Msa0005430:intron | 35.0% | |
| ! | AACTTCCATTTTCTCCCATA+TGG | - | chr1_1:8014200-8014219 | None:intergenic | 35.0% |
| ! | ATTCTAGGAGAGTATGTTAG+AGG | + | chr1_1:8014240-8014259 | Msa0005430:intron | 35.0% |
| TATACTGTGAGTAGAAAGTG+GGG | + | chr1_1:8014270-8014289 | Msa0005430:intron | 35.0% | |
| GAGCATTATTGTTAACGAGT+TGG | + | chr1_1:8014303-8014322 | Msa0005430:intron | 35.0% | |
| GGTATTAGAGTCTCTAACTT+TGG | + | chr1_1:8014346-8014365 | Msa0005430:intron | 35.0% | |
| CCACTACCACTAAAACTAAA+AGG | - | chr1_1:8014523-8014542 | None:intergenic | 35.0% | |
| !!! | CCTTTTAGTTTTAGTGGTAG+TGG | + | chr1_1:8014520-8014539 | Msa0005430:intron | 35.0% |
| !!! | TTTAGTTTTAGTGGTAGTGG+GGG | + | chr1_1:8014523-8014542 | Msa0005430:intron | 35.0% |
| CGATATGAAACATACTCTTG+TGG | - | chr1_1:8014570-8014589 | None:intergenic | 35.0% | |
| TTACTTTATTGGTCAGTCAG+TGG | + | chr1_1:8015148-8015167 | Msa0005430:intron | 35.0% | |
| ! | CAGTCAGTGGTACATTTTTA+AGG | + | chr1_1:8015161-8015180 | Msa0005430:intron | 35.0% |
| !! | AGTGGTACATTTTTAAGGGA+TGG | + | chr1_1:8015166-8015185 | Msa0005430:intron | 35.0% |
| !! | GTGGTACATTTTTAAGGGAT+GGG | + | chr1_1:8015167-8015186 | Msa0005430:intron | 35.0% |
| !! | CATTTTTAAGGGATGGGTAT+TGG | + | chr1_1:8015173-8015192 | Msa0005430:intron | 35.0% |
| AATAATCAGCAAACAGCAAC+AGG | - | chr1_1:8015322-8015341 | None:intergenic | 35.0% | |
| GTTCACTTGATTTCTGAACT+TGG | + | chr1_1:8015370-8015389 | Msa0005430:intron | 35.0% | |
| GACACACACTCTGAATTATA+TGG | - | chr1_1:8015440-8015459 | None:intergenic | 35.0% | |
| !!! | GAGTGTGTGTCTTTTGAAAT+TGG | + | chr1_1:8015449-8015468 | Msa0005430:three_prime_UTR | 35.0% |
| AATTGAAACGGTGAAGGATG+TGG | - | chr1_1:8012557-8012576 | None:intergenic | 40.0% | |
| CTAGTGAATTCGCCATTGTT+AGG | - | chr1_1:8012585-8012604 | None:intergenic | 40.0% | |
| ! | TTAGGGTTTTTACCAAAGCG+AGG | - | chr1_1:8012675-8012694 | None:intergenic | 40.0% |
| TGTTGTAGTGTCTGTTGTTG+TGG | - | chr1_1:8012816-8012835 | None:intergenic | 40.0% | |
| !!! | TGCTGCCTGATGTTTTAGAA+CGG | + | chr1_1:8014118-8014137 | Msa0005430:intron | 40.0% |
| !! | AACACCCGTTCTAAAACATC+AGG | - | chr1_1:8014126-8014145 | None:intergenic | 40.0% |
| ! | GAGTTTTTGATAGGACACCT+AGG | + | chr1_1:8014152-8014171 | Msa0005430:intron | 40.0% |
| AGTTCTATCATTGGTCCTCA+TGG | + | chr1_1:8014451-8014470 | Msa0005430:intron | 40.0% | |
| AAAGCAACATCCCAAGATAC+TGG | - | chr1_1:8015084-8015103 | None:intergenic | 40.0% | |
| ! | AGTATCTTGGGATGTTGCTT+TGG | + | chr1_1:8015083-8015102 | Msa0005430:three_prime_UTR | 40.0% |
| CACTCTGAATTATATGGGTC+TGG | - | chr1_1:8015434-8015453 | None:intergenic | 40.0% | |
| AAAGATCCCTCTCTGTTGCT+CGG | - | chr1_1:8012483-8012502 | None:intergenic | 45.0% | |
| TTCAGCAACAACAGCAACAG+AGG | + | chr1_1:8012841-8012860 | Msa0005430:CDS | 45.0% | |
| ACAACAGCAACAGAGGAGAA+AGG | + | chr1_1:8012848-8012867 | Msa0005430:CDS | 45.0% | |
| TAAATGGTGTGCTAGGGTTG+TGG | + | chr1_1:8013633-8013652 | Msa0005430:intron | 45.0% | |
| AAATGGTGTGCTAGGGTTGT+GGG | + | chr1_1:8013634-8013653 | Msa0005430:intron | 45.0% | |
| TTTCTTTAGGTGGGAGGGAA+TGG | + | chr1_1:8013813-8013832 | Msa0005430:intron | 45.0% | |
| !! | TGGGAGGGAATGGATTACTA+TGG | + | chr1_1:8013823-8013842 | Msa0005430:intron | 45.0% |
| !! | GGGAGGGAATGGATTACTAT+GGG | + | chr1_1:8013824-8013843 | Msa0005430:intron | 45.0% |
| !! | GGAGGGAATGGATTACTATG+GGG | + | chr1_1:8013825-8013844 | Msa0005430:intron | 45.0% |
| !!! | GCTGCCTGATGTTTTAGAAC+GGG | + | chr1_1:8014119-8014138 | Msa0005430:intron | 45.0% |
| TAGAAGAAAGTGGGGCCATA+TGG | + | chr1_1:8014182-8014201 | Msa0005430:intron | 45.0% | |
| AGAAGAAAGTGGGGCCATAT+GGG | + | chr1_1:8014183-8014202 | Msa0005430:intron | 45.0% | |
| CCTAGAATCTAACTCTGCGT+CGG | - | chr1_1:8014228-8014247 | None:intergenic | 45.0% | |
| TGTGAGTAGAAAGTGGGGAA+GGG | + | chr1_1:8014275-8014294 | Msa0005430:intron | 45.0% | |
| AGATACATGGGTATGCCATG+AGG | - | chr1_1:8014469-8014488 | None:intergenic | 45.0% | |
| ATGCATCTGTGGTGTATGGT+AGG | + | chr1_1:8014851-8014870 | Msa0005430:intron | 45.0% | |
| TAGAGCCAGACCAGTATCTT+GGG | + | chr1_1:8015071-8015090 | Msa0005430:three_prime_UTR | 45.0% | |
| AACATCCCAAGATACTGGTC+TGG | - | chr1_1:8015079-8015098 | None:intergenic | 45.0% | |
| !! | AAAATTAAAATGAAAAAAAA+AGG | - | chr1_1:8012708-8012727 | None:intergenic | 5.0% |
| CATGTTCCGAGCAACAGAGA+GGG | + | chr1_1:8012474-8012493 | Msa0005430:five_prime_UTR | 50.0% | |
| GAGCAACAGAGAGGGATCTT+TGG | + | chr1_1:8012482-8012501 | Msa0005430:five_prime_UTR | 50.0% | |
| CGGTGAAGGATGTGGCAATA+CGG | - | chr1_1:8012549-8012568 | None:intergenic | 50.0% | |
| CACTAGAGCAATCTCGTCCA+TGG | + | chr1_1:8012599-8012618 | Msa0005430:CDS | 50.0% | |
| CCAACAAAGGAACTGCGTAG+AGG | - | chr1_1:8012627-8012646 | None:intergenic | 50.0% | |
| CCTCTACGCAGTTCCTTTGT+TGG | + | chr1_1:8012624-8012643 | Msa0005430:CDS | 50.0% | |
| CGCATTTCATGTCCTCGCTT+TGG | + | chr1_1:8012660-8012679 | Msa0005430:CDS | 50.0% | |
| AGCACACAACAACAAGCGGT+AGG | - | chr1_1:8014102-8014121 | None:intergenic | 50.0% | |
| AGGCAGCACACAACAACAAG+CGG | - | chr1_1:8014106-8014125 | None:intergenic | 50.0% | |
| TGGGGCCATATGGGAGAAAA+TGG | + | chr1_1:8014192-8014211 | Msa0005430:intron | 50.0% | |
| CCGACGCAGAGTTAGATTCT+AGG | + | chr1_1:8014225-8014244 | Msa0005430:intron | 50.0% | |
| CTGTGAGTAGAAAGTGGGGA+AGG | + | chr1_1:8014274-8014293 | Msa0005430:intron | 50.0% | |
| TGCGACATGAGCACAATTGC+AGG | - | chr1_1:8014636-8014655 | None:intergenic | 50.0% | |
| !! | TTGGCATTGGCATGCATCTG+TGG | + | chr1_1:8014840-8014859 | Msa0005430:intron | 50.0% |
| TGGCATGCATCTGTGGTGTA+TGG | + | chr1_1:8014847-8014866 | Msa0005430:intron | 50.0% | |
| !!! | TGGTCTGGCTCTACGTTTTG+TGG | - | chr1_1:8015064-8015083 | None:intergenic | 50.0% |
| GTAGAGCCAGACCAGTATCT+TGG | + | chr1_1:8015070-8015089 | Msa0005430:three_prime_UTR | 50.0% | |
| CCTCTCTGTTGCTCGGAACA+TGG | - | chr1_1:8012476-8012495 | None:intergenic | 55.0% | |
| CCATGTTCCGAGCAACAGAG+AGG | + | chr1_1:8012473-8012492 | Msa0005430:five_prime_UTR | 55.0% | |
| GGAACTGCGTAGAGGAACCA+TGG | - | chr1_1:8012619-8012638 | None:intergenic | 55.0% | |
| GTGTGCTAGGGTTGTGGGTA+GGG | + | chr1_1:8013639-8013658 | Msa0005430:intron | 55.0% | |
| CACAACAACAAGCGGTAGGC+AGG | - | chr1_1:8014098-8014117 | None:intergenic | 55.0% | |
| !! | GATGGGTATTGGGCAGTCAG+CGG | + | chr1_1:8015184-8015203 | Msa0005430:intron | 55.0% |
| GGTGTGCTAGGGTTGTGGGT+AGG | + | chr1_1:8013638-8013657 | Msa0005430:intron | 60.0% | |
| TGCTAGGGTTGTGGGTAGGG+TGG | + | chr1_1:8013642-8013661 | Msa0005430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8012466 | 8015582 | 8012466 | ID=Msa0005430;Name=Msa0005430 |
| chr1_1 | mRNA | 8012466 | 8015582 | 8012466 | ID=Msa0005430-mRNA-1;Parent=Msa0005430;Name=Msa0005430-mRNA-1;_AED=0.26;_eAED=0.26;_QI=123|1|1|1|0.33|0.25|4|276|64 |
| chr1_1 | exon | 8012466 | 8012681 | 8012466 | ID=Msa0005430-mRNA-1:exon:2824;Parent=Msa0005430-mRNA-1 |
| chr1_1 | exon | 8012777 | 8012898 | 8012777 | ID=Msa0005430-mRNA-1:exon:2825;Parent=Msa0005430-mRNA-1 |
| chr1_1 | exon | 8015021 | 8015104 | 8015021 | ID=Msa0005430-mRNA-1:exon:2826;Parent=Msa0005430-mRNA-1 |
| chr1_1 | exon | 8015411 | 8015582 | 8015411 | ID=Msa0005430-mRNA-1:exon:2827;Parent=Msa0005430-mRNA-1 |
| chr1_1 | five_prime_UTR | 8012466 | 8012588 | 8012466 | ID=Msa0005430-mRNA-1:five_prime_utr;Parent=Msa0005430-mRNA-1 |
| chr1_1 | CDS | 8012589 | 8012681 | 8012589 | ID=Msa0005430-mRNA-1:cds;Parent=Msa0005430-mRNA-1 |
| chr1_1 | CDS | 8012777 | 8012878 | 8012777 | ID=Msa0005430-mRNA-1:cds;Parent=Msa0005430-mRNA-1 |
| chr1_1 | three_prime_UTR | 8012879 | 8012898 | 8012879 | ID=Msa0005430-mRNA-1:three_prime_utr;Parent=Msa0005430-mRNA-1 |
| chr1_1 | three_prime_UTR | 8015021 | 8015104 | 8015021 | ID=Msa0005430-mRNA-1:three_prime_utr;Parent=Msa0005430-mRNA-1 |
| chr1_1 | three_prime_UTR | 8015411 | 8015582 | 8015411 | ID=Msa0005430-mRNA-1:three_prime_utr;Parent=Msa0005430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
