Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099930 | GAU17679.1 | 88.736 | 364 | 30 | 2 | 1 | 359 | 187 | 544 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099930 | sp|Q9FZL4|MGDG_SOYBN | 81.370 | 365 | 55 | 3 | 2 | 359 | 172 | 530 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099930 | A0A2Z6M6N7 | 88.736 | 364 | 30 | 2 | 1 | 359 | 187 | 544 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099900 | Msa0099930 | 0.851700 | 7.480550e-61 | -8.615850e-47 |
| Msa0099930 | Msa1454750 | 0.836788 | 7.619619e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099930 | MtrunA17_Chr8g0347051 | 90.358 | 363 | 24 | 2 | 2 | 359 | 182 | 538 | 0.0 | 645 |
| Msa0099930 | MtrunA17_Chr1g0150361 | 90.083 | 363 | 25 | 2 | 2 | 359 | 183 | 539 | 0.0 | 640 |
| Msa0099930 | MtrunA17_Chr4g0064711 | 58.873 | 355 | 133 | 3 | 2 | 349 | 102 | 450 | 3.59e-139 | 403 |
| Msa0099930 | MtrunA17_Chr8g0347041 | 57.692 | 52 | 16 | 1 | 2 | 53 | 135 | 180 | 4.18e-11 | 62.4 |
| Msa0099930 | MtrunA17_Chr8g0347341 | 57.692 | 52 | 16 | 1 | 2 | 53 | 135 | 180 | 5.31e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099930 | AT4G31780.2 | 76.164 | 365 | 74 | 3 | 2 | 359 | 175 | 533 | 0.0 | 561 |
| Msa0099930 | AT4G31780.1 | 76.164 | 365 | 74 | 3 | 2 | 359 | 8 | 366 | 0.0 | 560 |
| Msa0099930 | AT4G31780.3 | 71.100 | 391 | 74 | 4 | 2 | 359 | 175 | 559 | 0.0 | 546 |
| Msa0099930 | AT2G11810.1 | 56.712 | 365 | 142 | 4 | 2 | 356 | 106 | 464 | 2.01e-139 | 404 |
| Msa0099930 | AT5G20410.1 | 56.906 | 362 | 143 | 3 | 2 | 356 | 102 | 457 | 3.68e-136 | 396 |
| Msa0099930 | AT2G11810.4 | 59.756 | 328 | 122 | 3 | 39 | 356 | 14 | 341 | 1.90e-132 | 382 |
| Msa0099930 | AT2G11810.2 | 53.817 | 262 | 108 | 3 | 2 | 256 | 106 | 361 | 4.51e-89 | 272 |
| Msa0099930 | AT2G11810.3 | 53.409 | 264 | 110 | 3 | 2 | 258 | 106 | 363 | 7.04e-89 | 272 |
Find 92 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATAAAATTAATAATTT+TGG | 0.100623 | 1_3:+6307110 | Msa0099930:three_prime_UTR |
| TCCCATGCATTCTTCAATTT+TGG | 0.143640 | 1_3:-6306072 | None:intergenic |
| GTAGGCCATAAATCTTTATT+TGG | 0.144917 | 1_3:-6304314 | None:intergenic |
| GATGAACTAAGGAGAGATTT+AGG | 0.146974 | 1_3:+6305256 | Msa0099930:CDS |
| AGGTGTTTATTACCGATTTA+TGG | 0.217636 | 1_3:+6302776 | Msa0099930:CDS |
| GTTCCCTATGTTGTTGAAAA+TGG | 0.232287 | 1_3:+6306745 | Msa0099930:CDS |
| CAAACCCAAATAAAGATTTA+TGG | 0.240574 | 1_3:+6304309 | Msa0099930:CDS |
| TCCAGCTTTCATTGCCCTAT+TGG | 0.320907 | 1_3:-6304280 | None:intergenic |
| ACTAAACATTAATATCAAAT+TGG | 0.334470 | 1_3:-6307069 | None:intergenic |
| ATGAACTAAGGAGAGATTTA+GGG | 0.343617 | 1_3:+6305257 | Msa0099930:CDS |
| ATGTAATCATTTAAAATAAT+AGG | 0.345699 | 1_3:-6306242 | None:intergenic |
| ACAAACTCAGTTCTATTGAT+TGG | 0.345962 | 1_3:+6305437 | Msa0099930:CDS |
| ATGGCCTCTGCAATTGTCCC+TGG | 0.362907 | 1_3:-6306206 | None:intergenic |
| AAAATTGTTGCGGACTGGTT+TGG | 0.366157 | 1_3:+6306805 | Msa0099930:CDS |
| TGCACACTGATTATTATATC+AGG | 0.373255 | 1_3:-6304014 | None:intergenic |
| TAGGCCATAAATCTTTATTT+GGG | 0.377476 | 1_3:-6304313 | None:intergenic |
| TCTTCCTGCTGTATTATTGA+TGG | 0.378039 | 1_3:+6305291 | Msa0099930:CDS |
| TGGCATACCTTTGGCCGAAC+AGG | 0.379500 | 1_3:-6304360 | None:intergenic |
| TTTATAAAGGAAGGTCTAAC+AGG | 0.381701 | 1_3:-6304336 | None:intergenic |
| CAACTACAGATGTTGCCAAT+AGG | 0.385092 | 1_3:+6304265 | Msa0099930:CDS |
| CTTCCTGCTGTATTATTGAT+GGG | 0.393576 | 1_3:+6305292 | Msa0099930:CDS |
| TTCCTTTGATTTCAGGAAGC+TGG | 0.409802 | 1_3:+6306718 | Msa0099930:intron |
| TGGCCGAACAGGCTTTATAA+AGG | 0.422561 | 1_3:-6304349 | None:intergenic |
| TTGTGGAGGATGACCTACTA+TGG | 0.432904 | 1_3:+6302869 | Msa0099930:CDS |
| AACTACAGATGTTGCCAATA+GGG | 0.444447 | 1_3:+6304266 | Msa0099930:CDS |
| CTATGGAACTGCCCCACGTC+TGG | 0.449733 | 1_3:+6302886 | Msa0099930:CDS |
| CTTCCTTTATAAAGCCTGTT+CGG | 0.450461 | 1_3:+6304346 | Msa0099930:CDS |
| AAATGATTACATTGCCGGGC+AGG | 0.456227 | 1_3:+6306253 | Msa0099930:CDS |
| TGCATTAAAACTAGCAAGGC+CGG | 0.462786 | 1_3:+6306864 | Msa0099930:CDS |
| CTTTGGAGTTAATGCTATGC+AGG | 0.466879 | 1_3:+6302756 | None:intergenic |
| GCCAATAGGGCAATGAAAGC+TGG | 0.467418 | 1_3:+6304279 | Msa0099930:CDS |
| TGCCCGAGCAGTAGCTTCAA+TGG | 0.468895 | 1_3:-6305335 | None:intergenic |
| TAGTGTATCAATACCTTCAC+TGG | 0.470804 | 1_3:-6305466 | None:intergenic |
| AATAGGCAGGCCTCGAATCA+TGG | 0.478545 | 1_3:-6306225 | None:intergenic |
| GAAGCTACTGCTCGGGCACT+TGG | 0.480129 | 1_3:+6305340 | Msa0099930:CDS |
| TACCAAAATTGAAGAATGCA+TGG | 0.490489 | 1_3:+6306070 | Msa0099930:CDS |
| TGGCCTCTGCAATTGTCCCT+GGG | 0.498243 | 1_3:-6306205 | None:intergenic |
| GAGAGATTTAGGGATGGATG+AGG | 0.498586 | 1_3:+6305267 | Msa0099930:CDS |
| TTCCTGCTGTATTATTGATG+GGG | 0.501628 | 1_3:+6305293 | Msa0099930:CDS |
| TCCCATTGAAGCTACTGCTC+GGG | 0.505735 | 1_3:+6305333 | Msa0099930:CDS |
| TTCTCTAATAGGATGAACTA+AGG | 0.511639 | 1_3:+6305245 | Msa0099930:intron |
| GCCCGAGCAGTAGCTTCAAT+GGG | 0.516727 | 1_3:-6305334 | None:intergenic |
| TAGCGAAAATTGTTGCGGAC+TGG | 0.524664 | 1_3:+6306800 | Msa0099930:CDS |
| CTATTGGCAACATCTGTAGT+TGG | 0.528409 | 1_3:-6304264 | None:intergenic |
| ACGTGGGGCAGTTCCATAGT+AGG | 0.529946 | 1_3:-6302882 | None:intergenic |
| AACATTAATATCAAATTGGT+GGG | 0.534272 | 1_3:-6307065 | None:intergenic |
| TATGTTGTTGAAAATGGTTG+TGG | 0.536014 | 1_3:+6306751 | Msa0099930:CDS |
| AAACATTAATATCAAATTGG+TGG | 0.539747 | 1_3:-6307066 | None:intergenic |
| TATAAAGCCTGTTCGGCCAA+AGG | 0.541804 | 1_3:+6304353 | Msa0099930:CDS |
| GTCCCATTGAAGCTACTGCT+CGG | 0.543348 | 1_3:+6305332 | Msa0099930:CDS |
| AAAGTACTCTAAATTGCCTA+AGG | 0.546044 | 1_3:+6306774 | Msa0099930:CDS |
| AGAGGAACGTGTTGCATCAG+TGG | 0.547034 | 1_3:-6304038 | None:intergenic |
| TCCTGCTGTATTATTGATGG+GGG | 0.548155 | 1_3:+6305294 | Msa0099930:CDS |
| CTTTGTAATAATGCAATCAC+AGG | 0.552893 | 1_3:-6306096 | None:intergenic |
| CTGTGATTGCATTATTACAA+AGG | 0.560129 | 1_3:+6306097 | Msa0099930:CDS |
| TGTGTGCTCAGACCATAAAT+CGG | 0.560704 | 1_3:-6302788 | None:intergenic |
| GGAATTTGATTGAACGGCCA+AGG | 0.560974 | 1_3:-6302811 | None:intergenic |
| ATTGCAGAGGCCATGATTCG+AGG | 0.563068 | 1_3:+6306215 | Msa0099930:CDS |
| CAACTTCAACATTCATAGCT+CGG | 0.564893 | 1_3:+6302932 | Msa0099930:CDS |
| AATCATTTAAAATAATAGGC+AGG | 0.569875 | 1_3:-6306238 | None:intergenic |
| TTACTAGCTCATGCATGTCA+TGG | 0.570480 | 1_3:-6306906 | None:intergenic |
| GGAGATTTATTAAATGACGA+GGG | 0.574821 | 1_3:+6305361 | Msa0099930:CDS |
| CGAACAGGCTTTATAAAGGA+AGG | 0.575344 | 1_3:-6304345 | None:intergenic |
| CAGAACTAAACTAACCATGT+TGG | 0.579591 | 1_3:-6304137 | None:intergenic |
| TGAGAACCACATTACCTGCC+CGG | 0.584401 | 1_3:-6306267 | None:intergenic |
| ATCACAAGAATCTGACCTGT+GGG | 0.585615 | 1_3:-6305388 | None:intergenic |
| TGATTGGAAGATTCCAGTGA+AGG | 0.586288 | 1_3:+6305453 | Msa0099930:CDS |
| ACTAAACTAACCATGTTGGA+TGG | 0.594783 | 1_3:-6304133 | None:intergenic |
| CCTGCTGTATTATTGATGGG+GGG | 0.598824 | 1_3:+6305295 | Msa0099930:CDS |
| AATGTGAAAGGCAGCAAAGG+TGG | 0.603076 | 1_3:+6307011 | Msa0099930:three_prime_UTR |
| ACCAAAATTGAAGAATGCAT+GGG | 0.604354 | 1_3:+6306071 | Msa0099930:CDS |
| TGAGCACGTGCCATCCAACA+TGG | 0.607260 | 1_3:+6304123 | Msa0099930:CDS |
| TAAAGGAAGGTCTAACAGGT+AGG | 0.611675 | 1_3:-6304332 | None:intergenic |
| GGTCAGATTCTTGTGATCTG+TGG | 0.618567 | 1_3:+6305394 | Msa0099930:CDS |
| AAAATGCATTAAAACTAGCA+AGG | 0.621362 | 1_3:+6306860 | Msa0099930:CDS |
| TGGCCCAGGGACAATTGCAG+AGG | 0.622682 | 1_3:+6306202 | Msa0099930:CDS |
| ACTAAGGAGAGATTTAGGGA+TGG | 0.645174 | 1_3:+6305261 | Msa0099930:CDS |
| TGGAGATTTATTAAATGACG+AGG | 0.645340 | 1_3:+6305360 | Msa0099930:CDS |
| TTTGACTGATGAACCAGACG+TGG | 0.647032 | 1_3:-6302899 | None:intergenic |
| TGGTGAAACATGGACCGTTG+TGG | 0.648644 | 1_3:+6302852 | Msa0099930:CDS |
| TATGGTCTGAGCACACACCT+TGG | 0.651270 | 1_3:+6302794 | Msa0099930:CDS |
| CTTGACCTCAAAATGCGAAG+AGG | 0.652018 | 1_3:-6304056 | None:intergenic |
| GAGATTTATTAAATGACGAG+GGG | 0.652249 | 1_3:+6305362 | Msa0099930:CDS |
| TTGACTGATGAACCAGACGT+GGG | 0.652821 | 1_3:-6302898 | None:intergenic |
| GGAGATAGCGAAAATTGTTG+CGG | 0.653478 | 1_3:+6306795 | Msa0099930:CDS |
| GCTCAAATCTGTAATAACTG+TGG | 0.657643 | 1_3:-6304105 | None:intergenic |
| GATCACAAGAATCTGACCTG+TGG | 0.659557 | 1_3:-6305389 | None:intergenic |
| AGATTTATTAAATGACGAGG+GGG | 0.661667 | 1_3:+6305363 | Msa0099930:CDS |
| TGAAACATGGACCGTTGTGG+AGG | 0.709765 | 1_3:+6302855 | Msa0099930:CDS |
| TAGTAGGTCATCCTCCACAA+CGG | 0.715366 | 1_3:-6302866 | None:intergenic |
| TGACTGATGAACCAGACGTG+GGG | 0.725412 | 1_3:-6302897 | None:intergenic |
| GTACAGCTTAATCAACACTG+AGG | 0.822600 | 1_3:+6306959 | Msa0099930:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAAAATTAATAATTT+TGG | + | chr1_3:6307110-6307129 | Msa0099930:three_prime_UTR | 0.0% |
| !! | TAAATAAATAAATGTTGATA+TGG | + | chr1_3:6305998-6306017 | Msa0099930:intron | 10.0% |
| !!! | ATGTAATCATTTAAAATAAT+AGG | - | chr1_3:6306245-6306264 | None:intergenic | 10.0% |
| !!! | TCTTATTTCTTGTATTTTTT+AGG | + | chr1_3:6304211-6304230 | Msa0099930:intron | 15.0% |
| !! | AACCTCAAATAATAAATAAA+CGG | - | chr1_3:6304659-6304678 | None:intergenic | 15.0% |
| !!! | CTCAAAATTCAAATTTTTAA+TGG | + | chr1_3:6304890-6304909 | Msa0099930:intron | 15.0% |
| !! | TCAATTGTTTGATATTTAAT+AGG | + | chr1_3:6304926-6304945 | Msa0099930:intron | 15.0% |
| !! | TTGGTAAAAACAATAATTTA+GGG | - | chr1_3:6306028-6306047 | None:intergenic | 15.0% |
| !! | ATTGGTAAAAACAATAATTT+AGG | - | chr1_3:6306029-6306048 | None:intergenic | 15.0% |
| !! | ATTAGATACTAGTTAAATTT+AGG | + | chr1_3:6306607-6306626 | Msa0099930:intron | 15.0% |
| !! | ACTAAACATTAATATCAAAT+TGG | - | chr1_3:6307072-6307091 | None:intergenic | 15.0% |
| !! | TAACTAACAACTTAAAAACA+GGG | - | chr1_3:6303119-6303138 | None:intergenic | 20.0% |
| !! | AAAGATATAAAGATGTTTGT+GGG | - | chr1_3:6303489-6303508 | None:intergenic | 20.0% |
| !! | TAAAGATATAAAGATGTTTG+TGG | - | chr1_3:6303490-6303509 | None:intergenic | 20.0% |
| !! | CATCTTTATATCTTTATATG+TGG | + | chr1_3:6303494-6303513 | Msa0099930:intron | 20.0% |
| !! | TTTATATCTTTATATGTGGA+AGG | + | chr1_3:6303498-6303517 | Msa0099930:intron | 20.0% |
| !! | TTGAAAATAACTTTATACGT+AGG | + | chr1_3:6303713-6303732 | Msa0099930:intron | 20.0% |
| !! | TGTATAAAACAATTCAGAAA+AGG | - | chr1_3:6304451-6304470 | None:intergenic | 20.0% |
| !!! | AATTGTTTTATACAATGAGA+TGG | + | chr1_3:6304457-6304476 | Msa0099930:intron | 20.0% |
| !!! | ATTGTTTTATACAATGAGAT+GGG | + | chr1_3:6304458-6304477 | Msa0099930:intron | 20.0% |
| !!! | TGTTGTTATTGTTAATATGA+TGG | + | chr1_3:6304772-6304791 | Msa0099930:intron | 20.0% |
| !! | GAAGATATTAAGTGTAAAAT+CGG | - | chr1_3:6304825-6304844 | None:intergenic | 20.0% |
| !! | TATTTCATGTTTATGCAATT+TGG | + | chr1_3:6305185-6305204 | Msa0099930:intron | 20.0% |
| !! | CTATCATGTAATAAAAATCT+AGG | - | chr1_3:6305537-6305556 | None:intergenic | 20.0% |
| !! | TTACTTGAATACTCTTAATT+GGG | - | chr1_3:6305712-6305731 | None:intergenic | 20.0% |
| !! | TTCACATCTTTAATTATTCT+GGG | - | chr1_3:6305759-6305778 | None:intergenic | 20.0% |
| !! | TTTCACATCTTTAATTATTC+TGG | - | chr1_3:6305760-6305779 | None:intergenic | 20.0% |
| !! | TTTAGATATTCATTGTACAA+GGG | - | chr1_3:6305887-6305906 | None:intergenic | 20.0% |
| !! | ATTTAGATATTCATTGTACA+AGG | - | chr1_3:6305888-6305907 | None:intergenic | 20.0% |
| !!! | ACATAAAGTTTTCTTTCTTA+AGG | + | chr1_3:6305959-6305978 | Msa0099930:intron | 20.0% |
| !! | TGGTAAAAACAATAATTTAG+GGG | - | chr1_3:6306027-6306046 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTACCAATGTTTT+AGG | + | chr1_3:6306034-6306053 | Msa0099930:intron | 20.0% |
| !!! | AATCATTTAAAATAATAGGC+AGG | - | chr1_3:6306241-6306260 | None:intergenic | 20.0% |
| !!! | ATTTTAAATGATTACATTGC+CGG | + | chr1_3:6306248-6306267 | Msa0099930:CDS | 20.0% |
| !! | TCAAATAAAAAATCATGACA+AGG | - | chr1_3:6306310-6306329 | None:intergenic | 20.0% |
| !! | AACATTAATATCAAATTGGT+GGG | - | chr1_3:6307068-6307087 | None:intergenic | 20.0% |
| !! | AAACATTAATATCAAATTGG+TGG | - | chr1_3:6307069-6307088 | None:intergenic | 20.0% |
| !!! | CTTTTAGGAATTTGATTGAA+CGG | - | chr1_3:6302820-6302839 | None:intergenic | 25.0% |
| ! | AACTTATCAGTTATCCATTA+CGG | - | chr1_3:6303041-6303060 | None:intergenic | 25.0% |
| ! | GTAACTAACAACTTAAAAAC+AGG | - | chr1_3:6303120-6303139 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGTTAGTTACCAT+AGG | + | chr1_3:6303123-6303142 | Msa0099930:intron | 25.0% |
| !! | TAAATGCTTGTATGATTTGT+TGG | - | chr1_3:6303244-6303263 | None:intergenic | 25.0% |
| !! | AGATATTTTTCATCCAATGT+GGG | - | chr1_3:6303694-6303713 | None:intergenic | 25.0% |
| !! | AAGATATTTTTCATCCAATG+TGG | - | chr1_3:6303695-6303714 | None:intergenic | 25.0% |
| ! | TATAACATTCTCTTAGAATC+TGG | - | chr1_3:6303790-6303809 | None:intergenic | 25.0% |
| !!! | TCTTGTATATTTTTACAGTG+AGG | + | chr1_3:6303965-6303984 | Msa0099930:intron | 25.0% |
| ! | CAAACCCAAATAAAGATTTA+TGG | + | chr1_3:6304309-6304328 | Msa0099930:CDS | 25.0% |
| !! | TAGGCCATAAATCTTTATTT+GGG | - | chr1_3:6304316-6304335 | None:intergenic | 25.0% |
| !! | GTTTAGTAATTCAACTTGTT+AGG | + | chr1_3:6304511-6304530 | Msa0099930:intron | 25.0% |
| ! | ATTTATGACAAGAATGAGAT+GGG | + | chr1_3:6304564-6304583 | Msa0099930:intron | 25.0% |
| ! | ATAAATAAACGGCAAAATCA+TGG | - | chr1_3:6304648-6304667 | None:intergenic | 25.0% |
| !! | TGCCGTTTATTTATTATTTG+AGG | + | chr1_3:6304654-6304673 | Msa0099930:intron | 25.0% |
| ! | ATTGTTAATATGATGGTTCA+TGG | + | chr1_3:6304779-6304798 | Msa0099930:intron | 25.0% |
| ! | GATTCTGATTCTTTAACTAA+GGG | + | chr1_3:6304948-6304967 | Msa0099930:intron | 25.0% |
| ! | CTAAAATTATAATAGTCCGT+TGG | - | chr1_3:6304976-6304995 | None:intergenic | 25.0% |
| !! | TTTTAGTATAGTGTACATGA+TGG | + | chr1_3:6304990-6305009 | Msa0099930:intron | 25.0% |
| ! | TATTGATACACTAATTGTTC+CGG | + | chr1_3:6305476-6305495 | Msa0099930:intron | 25.0% |
| ! | AGCAAAAAAAATGTTACTCA+TGG | + | chr1_3:6305628-6305647 | Msa0099930:intron | 25.0% |
| ! | CTTACTTGAATACTCTTAAT+TGG | - | chr1_3:6305713-6305732 | None:intergenic | 25.0% |
| !! | AGAGTATTCAAGTAAGAAAA+TGG | + | chr1_3:6305717-6305736 | Msa0099930:intron | 25.0% |
| ! | ATAAACTTATAATTGCTGAG+CGG | + | chr1_3:6305795-6305814 | Msa0099930:intron | 25.0% |
| ! | TTAGATATTCATTGTACAAG+GGG | - | chr1_3:6305886-6305905 | None:intergenic | 25.0% |
| !! | TTTTAAATGATTACATTGCC+GGG | + | chr1_3:6306249-6306268 | Msa0099930:CDS | 25.0% |
| !! | TAACAACACTGGTTAAATTT+AGG | + | chr1_3:6306549-6306568 | Msa0099930:intron | 25.0% |
| !!! | TGCTAGTTTTAATGCATTTT+GGG | - | chr1_3:6306860-6306879 | None:intergenic | 25.0% |
| !!! | TTGCTAGTTTTAATGCATTT+TGG | - | chr1_3:6306861-6306880 | None:intergenic | 25.0% |
| ! | AAAATGCATTAAAACTAGCA+AGG | + | chr1_3:6306860-6306879 | Msa0099930:CDS | 25.0% |
| !! | TGTTTTGTGAAAAATGTGAA+AGG | + | chr1_3:6306999-6307018 | Msa0099930:three_prime_UTR | 25.0% |
| !! | AGGTGTTTATTACCGATTTA+TGG | + | chr1_3:6302776-6302795 | Msa0099930:CDS | 30.0% |
| ! | CCAAAAAAGCTATAGCTTTT+AGG | - | chr1_3:6302835-6302854 | None:intergenic | 30.0% |
| !!! | CCTAAAAGCTATAGCTTTTT+TGG | + | chr1_3:6302832-6302851 | Msa0099930:CDS | 30.0% |
| !!! | ATAGCTTTTTTGGTGAAACA+TGG | + | chr1_3:6302842-6302861 | Msa0099930:CDS | 30.0% |
| TGAATTAGTATATGCCGTAA+TGG | + | chr1_3:6303024-6303043 | Msa0099930:intron | 30.0% | |
| ATACTGTTTGAATGATCCTA+TGG | - | chr1_3:6303142-6303161 | None:intergenic | 30.0% | |
| !! | GTTTTATTGTCGTTATGAAC+TGG | + | chr1_3:6303181-6303200 | Msa0099930:intron | 30.0% |
| ! | ATGTGCAGTATACAGTTTTT+CGG | + | chr1_3:6303269-6303288 | Msa0099930:intron | 30.0% |
| ACAATCTTAGAACTTGAGTT+TGG | - | chr1_3:6303566-6303585 | None:intergenic | 30.0% | |
| ! | CAGAAGTTATTGTAATTTGC+TGG | + | chr1_3:6303847-6303866 | Msa0099930:intron | 30.0% |
| AGTATAATATCACATGTCAG+AGG | + | chr1_3:6303933-6303952 | Msa0099930:intron | 30.0% | |
| ! | TGCACACTGATTATTATATC+AGG | - | chr1_3:6304017-6304036 | None:intergenic | 30.0% |
| ! | TCAGACTATAGGTAATCTTT+TGG | - | chr1_3:6304183-6304202 | None:intergenic | 30.0% |
| AGATGTCAAAATCAGACTAT+AGG | - | chr1_3:6304194-6304213 | None:intergenic | 30.0% | |
| GTAGGCCATAAATCTTTATT+TGG | - | chr1_3:6304317-6304336 | None:intergenic | 30.0% | |
| TTTATAAAGGAAGGTCTAAC+AGG | - | chr1_3:6304339-6304358 | None:intergenic | 30.0% | |
| TTCTTGACTTCTTATAGCTA+TGG | + | chr1_3:6304385-6304404 | Msa0099930:intron | 30.0% | |
| CAATTCAGAAAAGGTCATTT+AGG | - | chr1_3:6304442-6304461 | None:intergenic | 30.0% | |
| !! | ATACAATGAGATGGGTTAAT+AGG | + | chr1_3:6304466-6304485 | Msa0099930:intron | 30.0% |
| CATCTCATTCTTGTCATAAA+TGG | - | chr1_3:6304565-6304584 | None:intergenic | 30.0% | |
| CATTTATGACAAGAATGAGA+TGG | + | chr1_3:6304563-6304582 | Msa0099930:intron | 30.0% | |
| ! | AACCATTTTCTTTCTTGCTA+AGG | + | chr1_3:6304592-6304611 | Msa0099930:intron | 30.0% |
| ! | ACCATTTTCTTTCTTGCTAA+GGG | + | chr1_3:6304593-6304612 | Msa0099930:intron | 30.0% |
| ! | TGTATTGTCGACTATAATCT+TGG | + | chr1_3:6304622-6304641 | Msa0099930:intron | 30.0% |
| TATCTTCCTTAGTTAGCATA+TGG | + | chr1_3:6304838-6304857 | Msa0099930:intron | 30.0% | |
| GGATTCTGATTCTTTAACTA+AGG | + | chr1_3:6304947-6304966 | Msa0099930:intron | 30.0% | |
| CTATTAACCATGTGTTTGAT+TGG | + | chr1_3:6305126-6305145 | Msa0099930:intron | 30.0% | |
| TTCTCTAATAGGATGAACTA+AGG | + | chr1_3:6305245-6305264 | Msa0099930:intron | 30.0% | |
| ATGAACTAAGGAGAGATTTA+GGG | + | chr1_3:6305257-6305276 | Msa0099930:CDS | 30.0% | |
| TGGAGATTTATTAAATGACG+AGG | + | chr1_3:6305360-6305379 | Msa0099930:CDS | 30.0% | |
| GGAGATTTATTAAATGACGA+GGG | + | chr1_3:6305361-6305380 | Msa0099930:CDS | 30.0% | |
| GAGATTTATTAAATGACGAG+GGG | + | chr1_3:6305362-6305381 | Msa0099930:CDS | 30.0% | |
| AGATTTATTAAATGACGAGG+GGG | + | chr1_3:6305363-6305382 | Msa0099930:CDS | 30.0% | |
| ACAAACTCAGTTCTATTGAT+TGG | + | chr1_3:6305437-6305456 | Msa0099930:CDS | 30.0% | |
| TTCAAGTAAGAAAATGGAGT+AGG | + | chr1_3:6305723-6305742 | Msa0099930:intron | 30.0% | |
| !! | TTTACCAATGTTTTAGGTCA+TGG | + | chr1_3:6306040-6306059 | Msa0099930:intron | 30.0% |
| !! | TTACCAATGTTTTAGGTCAT+GGG | + | chr1_3:6306041-6306060 | Msa0099930:intron | 30.0% |
| TACCAAAATTGAAGAATGCA+TGG | + | chr1_3:6306070-6306089 | Msa0099930:CDS | 30.0% | |
| ACCAAAATTGAAGAATGCAT+GGG | + | chr1_3:6306071-6306090 | Msa0099930:CDS | 30.0% | |
| CTTTGTAATAATGCAATCAC+AGG | - | chr1_3:6306099-6306118 | None:intergenic | 30.0% | |
| CTGTGATTGCATTATTACAA+AGG | + | chr1_3:6306097-6306116 | Msa0099930:CDS | 30.0% | |
| GATTGCATTATTACAAAGGT+TGG | + | chr1_3:6306101-6306120 | Msa0099930:intron | 30.0% | |
| TTGTGAAATAGTGTCTATAG+CGG | - | chr1_3:6306449-6306468 | None:intergenic | 30.0% | |
| ! | TAACCAGTGTTGTTAAATAG+CGG | - | chr1_3:6306544-6306563 | None:intergenic | 30.0% |
| TACTAGTTAAATTTAGGCTG+AGG | + | chr1_3:6306613-6306632 | Msa0099930:intron | 30.0% | |
| ACAACCATATTCAATCACTT+GGG | - | chr1_3:6306685-6306704 | None:intergenic | 30.0% | |
| ! | ACATCATTTCCTTTGATTTC+AGG | + | chr1_3:6306711-6306730 | Msa0099930:intron | 30.0% |
| ! | CAACCATTTTCAACAACATA+GGG | - | chr1_3:6306751-6306770 | None:intergenic | 30.0% |
| ! | ACAACCATTTTCAACAACAT+AGG | - | chr1_3:6306752-6306771 | None:intergenic | 30.0% |
| TATGTTGTTGAAAATGGTTG+TGG | + | chr1_3:6306751-6306770 | Msa0099930:CDS | 30.0% | |
| ! | AAAGTACTCTAAATTGCCTA+AGG | + | chr1_3:6306774-6306793 | Msa0099930:CDS | 30.0% |
| ! | ACAATTTTGAACACAGAATC+CGG | - | chr1_3:6306886-6306905 | None:intergenic | 30.0% |
| GTGTATCACTAGTAAAAATG+AGG | + | chr1_3:6307033-6307052 | Msa0099930:three_prime_UTR | 30.0% | |
| CAACTTCAACATTCATAGCT+CGG | + | chr1_3:6302932-6302951 | Msa0099930:CDS | 35.0% | |
| ! | ATTCATAGCTCGGTAGATTT+TGG | + | chr1_3:6302942-6302961 | Msa0099930:intron | 35.0% |
| CGAAGTTATTTGACAAGAAC+TGG | - | chr1_3:6302985-6303004 | None:intergenic | 35.0% | |
| TGAGTCATACATGAAAGTCA+GGG | + | chr1_3:6303072-6303091 | Msa0099930:intron | 35.0% | |
| TATGAACTGGATTTCTCTAG+TGG | + | chr1_3:6303194-6303213 | Msa0099930:intron | 35.0% | |
| TGACAATAAAAATGACCGCA+CGG | + | chr1_3:6303328-6303347 | Msa0099930:intron | 35.0% | |
| CTAACTCAACCTTACAAAAC+CGG | - | chr1_3:6303760-6303779 | None:intergenic | 35.0% | |
| ! | GATGCATATGTTGTTTGTTC+TGG | + | chr1_3:6303874-6303893 | Msa0099930:intron | 35.0% |
| ! | TTTTACAGTGAGGTTGCTAA+AGG | + | chr1_3:6303975-6303994 | Msa0099930:intron | 35.0% |
| GCTCAAATCTGTAATAACTG+TGG | - | chr1_3:6304108-6304127 | None:intergenic | 35.0% | |
| ACTAAACTAACCATGTTGGA+TGG | - | chr1_3:6304136-6304155 | None:intergenic | 35.0% | |
| CAGAACTAAACTAACCATGT+TGG | - | chr1_3:6304140-6304159 | None:intergenic | 35.0% | |
| !! | CAACATGGTTAGTTTAGTTC+TGG | + | chr1_3:6304138-6304157 | Msa0099930:intron | 35.0% |
| AACTACAGATGTTGCCAATA+GGG | + | chr1_3:6304266-6304285 | Msa0099930:CDS | 35.0% | |
| CTTCCTTTATAAAGCCTGTT+CGG | + | chr1_3:6304346-6304365 | Msa0099930:CDS | 35.0% | |
| GCTATAAGAAGTCAAGAACA+TGG | - | chr1_3:6304383-6304402 | None:intergenic | 35.0% | |
| ACCCTTAGCAAGAAAGAAAA+TGG | - | chr1_3:6304597-6304616 | None:intergenic | 35.0% | |
| ! | TTTTCTTTCTTGCTAAGGGT+AGG | + | chr1_3:6304597-6304616 | Msa0099930:intron | 35.0% |
| GCTCAGATTAACAATAGATG+TGG | - | chr1_3:6304718-6304737 | None:intergenic | 35.0% | |
| CATCTATTGTTAATCTGAGC+TGG | + | chr1_3:6304718-6304737 | Msa0099930:intron | 35.0% | |
| ! | ATCAAGTCTTATCTCTCACT+AGG | - | chr1_3:6304749-6304768 | None:intergenic | 35.0% |
| GTTAATATGATGGTTCATGG+CGG | + | chr1_3:6304782-6304801 | Msa0099930:intron | 35.0% | |
| ACTTCTCCATATGCTAACTA+AGG | - | chr1_3:6304847-6304866 | None:intergenic | 35.0% | |
| GATGAACTAAGGAGAGATTT+AGG | + | chr1_3:6305256-6305275 | Msa0099930:CDS | 35.0% | |
| TCTTCCTGCTGTATTATTGA+TGG | + | chr1_3:6305291-6305310 | Msa0099930:CDS | 35.0% | |
| CTTCCTGCTGTATTATTGAT+GGG | + | chr1_3:6305292-6305311 | Msa0099930:CDS | 35.0% | |
| TTCCTGCTGTATTATTGATG+GGG | + | chr1_3:6305293-6305312 | Msa0099930:CDS | 35.0% | |
| TAGTGTATCAATACCTTCAC+TGG | - | chr1_3:6305469-6305488 | None:intergenic | 35.0% | |
| TCAAGTAAAATCACATCCAC+CGG | - | chr1_3:6305498-6305517 | None:intergenic | 35.0% | |
| ! | AATCTAGGACATGCATATAC+TGG | - | chr1_3:6305522-6305541 | None:intergenic | 35.0% |
| ! | ATAGACTGTTGTCTAGTCTT+AGG | + | chr1_3:6305553-6305572 | Msa0099930:intron | 35.0% |
| ATACTCTTAATTGGGACAGT+GGG | - | chr1_3:6305704-6305723 | None:intergenic | 35.0% | |
| AATACTCTTAATTGGGACAG+TGG | - | chr1_3:6305705-6305724 | None:intergenic | 35.0% | |
| TTCTTAAGGTAGAAGATGTC+TGG | + | chr1_3:6305973-6305992 | Msa0099930:intron | 35.0% | |
| TCTTAAGGTAGAAGATGTCT+GGG | + | chr1_3:6305974-6305993 | Msa0099930:intron | 35.0% | |
| AATCCCATGACCTAAAACAT+TGG | - | chr1_3:6306047-6306066 | None:intergenic | 35.0% | |
| ! | TCCCATGCATTCTTCAATTT+TGG | - | chr1_3:6306075-6306094 | None:intergenic | 35.0% |
| CATCAACAACTGTCATAATG+AGG | - | chr1_3:6306155-6306174 | None:intergenic | 35.0% | |
| CTCATTATGACAGTTGTTGA+TGG | + | chr1_3:6306153-6306172 | Msa0099930:intron | 35.0% | |
| !!! | TCCTTTTGTGTTGCTTTTGT+AGG | + | chr1_3:6306178-6306197 | Msa0099930:intron | 35.0% |
| AAAAAATCATGACAAGGTCG+AGG | - | chr1_3:6306304-6306323 | None:intergenic | 35.0% | |
| !! | AAAGTTAGCTTGCACTATTG+TGG | + | chr1_3:6306332-6306351 | Msa0099930:intron | 35.0% |
| ACTATAGCACTGTTATGCAA+CGG | - | chr1_3:6306425-6306444 | None:intergenic | 35.0% | |
| TACACCCAAGTGATTGAATA+TGG | + | chr1_3:6306678-6306697 | Msa0099930:intron | 35.0% | |
| CACAACCATATTCAATCACT+TGG | - | chr1_3:6306686-6306705 | None:intergenic | 35.0% | |
| GTTCCCTATGTTGTTGAAAA+TGG | + | chr1_3:6306745-6306764 | Msa0099930:CDS | 35.0% | |
| ! | ACAATTTTCGCTATCTCCTT+AGG | - | chr1_3:6306793-6306812 | None:intergenic | 35.0% |
| !!! | GGACATTGCTTTTAGTTCAT+CGG | - | chr1_3:6306839-6306858 | None:intergenic | 35.0% |
| AAAAATGTGAAAGGCAGCAA+AGG | + | chr1_3:6307008-6307027 | Msa0099930:three_prime_UTR | 35.0% | |
| TGTGTGCTCAGACCATAAAT+CGG | - | chr1_3:6302791-6302810 | None:intergenic | 40.0% | |
| GTGAGTCATACATGAAAGTC+AGG | + | chr1_3:6303071-6303090 | Msa0099930:intron | 40.0% | |
| AACTTGGCAATATCTCAGCA+CGG | + | chr1_3:6303352-6303371 | Msa0099930:intron | 40.0% | |
| TCATGCACTTTATTGGTAGG+TGG | - | chr1_3:6303399-6303418 | None:intergenic | 40.0% | |
| CTGTCATGCACTTTATTGGT+AGG | - | chr1_3:6303402-6303421 | None:intergenic | 40.0% | |
| GAGACTGTCATGCACTTTAT+TGG | - | chr1_3:6303406-6303425 | None:intergenic | 40.0% | |
| TGCAACTGCAGGTAATAAGA+GGG | - | chr1_3:6303438-6303457 | None:intergenic | 40.0% | |
| TTGCAACTGCAGGTAATAAG+AGG | - | chr1_3:6303439-6303458 | None:intergenic | 40.0% | |
| CTTCCACATTGGATGAGATT+AGG | + | chr1_3:6303463-6303482 | Msa0099930:intron | 40.0% | |
| TCCTACAAAACTAGCTCGTA+AGG | - | chr1_3:6303533-6303552 | None:intergenic | 40.0% | |
| !!! | TACGAGCTAGTTTTGTAGGA+TGG | + | chr1_3:6303533-6303552 | Msa0099930:intron | 40.0% |
| !!! | TAGTTTTGTAGGATGGAGTG+AGG | + | chr1_3:6303540-6303559 | Msa0099930:intron | 40.0% |
| CAATAGACCTTGAATAGGCT+CGG | - | chr1_3:6303591-6303610 | None:intergenic | 40.0% | |
| GAGCCTATTCAAGGTCTATT+GGG | + | chr1_3:6303590-6303609 | Msa0099930:intron | 40.0% | |
| ! | CACGCTCTAGATTTGACAAA+TGG | - | chr1_3:6303652-6303671 | None:intergenic | 40.0% |
| ! | TTGTCAAATCTAGAGCGTGA+AGG | + | chr1_3:6303653-6303672 | Msa0099930:intron | 40.0% |
| ! | TGTCAAATCTAGAGCGTGAA+GGG | + | chr1_3:6303654-6303673 | Msa0099930:intron | 40.0% |
| !! | CGGTTTTGTAAGGTTGAGTT+AGG | + | chr1_3:6303758-6303777 | Msa0099930:intron | 40.0% |
| !!! | TCTTCGCATTTTGAGGTCAA+GGG | + | chr1_3:6304058-6304077 | Msa0099930:CDS | 40.0% |
| CTATTGGCAACATCTGTAGT+TGG | - | chr1_3:6304267-6304286 | None:intergenic | 40.0% | |
| CAACTACAGATGTTGCCAAT+AGG | + | chr1_3:6304265-6304284 | Msa0099930:CDS | 40.0% | |
| TAAAGGAAGGTCTAACAGGT+AGG | - | chr1_3:6304335-6304354 | None:intergenic | 40.0% | |
| ! | CGAACAGGCTTTATAAAGGA+AGG | - | chr1_3:6304348-6304367 | None:intergenic | 40.0% |
| TCAAGAACATGGCATACCTT+TGG | - | chr1_3:6304372-6304391 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTCACTAGGT+GGG | - | chr1_3:6304745-6304764 | None:intergenic | 40.0% |
| ! | AAGTCTTATCTCTCACTAGG+TGG | - | chr1_3:6304746-6304765 | None:intergenic | 40.0% |
| TCTTTAACTAAGGGCTCCAA+CGG | + | chr1_3:6304957-6304976 | Msa0099930:intron | 40.0% | |
| GCAGATACCAATCAAACACA+TGG | - | chr1_3:6305136-6305155 | None:intergenic | 40.0% | |
| CATTGTCGAGCTTCTCTAAT+AGG | + | chr1_3:6305234-6305253 | Msa0099930:intron | 40.0% | |
| ACTAAGGAGAGATTTAGGGA+TGG | + | chr1_3:6305261-6305280 | Msa0099930:CDS | 40.0% | |
| TCCTGCTGTATTATTGATGG+GGG | + | chr1_3:6305294-6305313 | Msa0099930:CDS | 40.0% | |
| ATCACAAGAATCTGACCTGT+GGG | - | chr1_3:6305391-6305410 | None:intergenic | 40.0% | |
| TGATTGGAAGATTCCAGTGA+AGG | + | chr1_3:6305453-6305472 | Msa0099930:CDS | 40.0% | |
| TGATACACTAATTGTTCCGG+TGG | + | chr1_3:6305479-6305498 | Msa0099930:intron | 40.0% | |
| AAGAAAATGGAGTAGGCAAG+TGG | + | chr1_3:6305730-6305749 | Msa0099930:intron | 40.0% | |
| AGAAAATGGAGTAGGCAAGT+GGG | + | chr1_3:6305731-6305750 | Msa0099930:intron | 40.0% | |
| CTCACACTAGAAACTTTGCT+AGG | - | chr1_3:6305850-6305869 | None:intergenic | 40.0% | |
| CTTAAGGTAGAAGATGTCTG+GGG | + | chr1_3:6305975-6305994 | Msa0099930:intron | 40.0% | |
| GCCTACAAAAGCAACACAAA+AGG | - | chr1_3:6306182-6306201 | None:intergenic | 40.0% | |
| !!! | TTTGTGTTGCTTTTGTAGGC+TGG | + | chr1_3:6306182-6306201 | Msa0099930:intron | 40.0% |
| TTGTTAAATAGCGGCTATGG+CGG | - | chr1_3:6306535-6306554 | None:intergenic | 40.0% | |
| ! | GTGTTGTTAAATAGCGGCTA+TGG | - | chr1_3:6306538-6306557 | None:intergenic | 40.0% |
| TAGCCGCTATTTAACAACAC+TGG | + | chr1_3:6306538-6306557 | Msa0099930:intron | 40.0% | |
| ! | CACTGGTTAAATTTAGGCTG+AGG | + | chr1_3:6306555-6306574 | Msa0099930:intron | 40.0% |
| GCTGAGGTTTCATACATAAG+TGG | + | chr1_3:6306571-6306590 | Msa0099930:intron | 40.0% | |
| AAATCGTTCTCAACGTAGCT+TGG | + | chr1_3:6306647-6306666 | Msa0099930:intron | 40.0% | |
| ! | TTCCTTTGATTTCAGGAAGC+TGG | + | chr1_3:6306718-6306737 | Msa0099930:intron | 40.0% |
| GGAGATAGCGAAAATTGTTG+CGG | + | chr1_3:6306795-6306814 | Msa0099930:CDS | 40.0% | |
| !! | AAAATTGTTGCGGACTGGTT+TGG | + | chr1_3:6306805-6306824 | Msa0099930:CDS | 40.0% |
| !!! | GCTTTTAGTTCATCGGCTTT+TGG | - | chr1_3:6306832-6306851 | None:intergenic | 40.0% |
| TGCATTAAAACTAGCAAGGC+CGG | + | chr1_3:6306864-6306883 | Msa0099930:CDS | 40.0% | |
| TTACTAGCTCATGCATGTCA+TGG | - | chr1_3:6306909-6306928 | None:intergenic | 40.0% | |
| GTACAGCTTAATCAACACTG+AGG | + | chr1_3:6306959-6306978 | Msa0099930:exon | 40.0% | |
| GGAATTTGATTGAACGGCCA+AGG | - | chr1_3:6302814-6302833 | None:intergenic | 45.0% | |
| TAGTAGGTCATCCTCCACAA+CGG | - | chr1_3:6302869-6302888 | None:intergenic | 45.0% | |
| TTGTGGAGGATGACCTACTA+TGG | + | chr1_3:6302869-6302888 | Msa0099930:CDS | 45.0% | |
| TTGACTGATGAACCAGACGT+GGG | - | chr1_3:6302901-6302920 | None:intergenic | 45.0% | |
| TTTGACTGATGAACCAGACG+TGG | - | chr1_3:6302902-6302921 | None:intergenic | 45.0% | |
| ! | ATGAAAGTCAGGGCGTTAAC+TGG | + | chr1_3:6303082-6303101 | Msa0099930:intron | 45.0% |
| GAACTGGATTTCTCTAGTGG+TGG | + | chr1_3:6303197-6303216 | Msa0099930:intron | 45.0% | |
| AAAATGACCGCACGGTAACT+TGG | + | chr1_3:6303336-6303355 | Msa0099930:intron | 45.0% | |
| GATATTGCCAAGTTACCGTG+CGG | - | chr1_3:6303346-6303365 | None:intergenic | 45.0% | |
| GTTGCAATGTGCTTCCACAT+TGG | + | chr1_3:6303452-6303471 | Msa0099930:intron | 45.0% | |
| AAACTAGCTCGTAAGGCAAG+AGG | - | chr1_3:6303526-6303545 | None:intergenic | 45.0% | |
| !!! | GCCTTACGAGCTAGTTTTGT+AGG | + | chr1_3:6303529-6303548 | Msa0099930:intron | 45.0% |
| ATTGTAGCCGAGCCTATTCA+AGG | + | chr1_3:6303581-6303600 | Msa0099930:intron | 45.0% | |
| CGAGCCTATTCAAGGTCTAT+TGG | + | chr1_3:6303589-6303608 | Msa0099930:intron | 45.0% | |
| TGGCCCAATAGACCTTGAAT+AGG | - | chr1_3:6303596-6303615 | None:intergenic | 45.0% | |
| GTTTGTCAAGAGTCCCACAT+TGG | + | chr1_3:6303678-6303697 | Msa0099930:intron | 45.0% | |
| ! | ACGTTCCTCTTCGCATTTTG+AGG | + | chr1_3:6304051-6304070 | Msa0099930:CDS | 45.0% |
| CTTGACCTCAAAATGCGAAG+AGG | - | chr1_3:6304059-6304078 | None:intergenic | 45.0% | |
| !!! | CTCTTCGCATTTTGAGGTCA+AGG | + | chr1_3:6304057-6304076 | Msa0099930:CDS | 45.0% |
| !!! | CTTCGCATTTTGAGGTCAAG+GGG | + | chr1_3:6304059-6304078 | Msa0099930:CDS | 45.0% |
| TCCAGCTTTCATTGCCCTAT+TGG | - | chr1_3:6304283-6304302 | None:intergenic | 45.0% | |
| ! | TGGCCGAACAGGCTTTATAA+AGG | - | chr1_3:6304352-6304371 | None:intergenic | 45.0% |
| TATAAAGCCTGTTCGGCCAA+AGG | + | chr1_3:6304353-6304372 | Msa0099930:CDS | 45.0% | |
| ! | ATATGATGGTTCATGGCGGA+TGG | + | chr1_3:6304786-6304805 | Msa0099930:intron | 45.0% |
| TGGTATCTGCTTTCGCTGAT+TGG | + | chr1_3:6305146-6305165 | Msa0099930:intron | 45.0% | |
| GAGAGATTTAGGGATGGATG+AGG | + | chr1_3:6305267-6305286 | Msa0099930:CDS | 45.0% | |
| CCTGCTGTATTATTGATGGG+GGG | + | chr1_3:6305295-6305314 | Msa0099930:CDS | 45.0% | |
| GATCACAAGAATCTGACCTG+TGG | - | chr1_3:6305392-6305411 | None:intergenic | 45.0% | |
| GGTCAGATTCTTGTGATCTG+TGG | + | chr1_3:6305394-6305413 | Msa0099930:CDS | 45.0% | |
| AAATGATTACATTGCCGGGC+AGG | + | chr1_3:6306253-6306272 | Msa0099930:CDS | 45.0% | |
| ATCATGACAAGGTCGAGGAA+TGG | - | chr1_3:6306299-6306318 | None:intergenic | 45.0% | |
| TGCCAGCTTCCTGAAATCAA+AGG | - | chr1_3:6306723-6306742 | None:intergenic | 45.0% | |
| TAGCGAAAATTGTTGCGGAC+TGG | + | chr1_3:6306800-6306819 | Msa0099930:CDS | 45.0% | |
| AATGTGAAAGGCAGCAAAGG+TGG | + | chr1_3:6307011-6307030 | Msa0099930:three_prime_UTR | 45.0% | |
| TATGGTCTGAGCACACACCT+TGG | + | chr1_3:6302794-6302813 | Msa0099930:CDS | 50.0% | |
| TGGTGAAACATGGACCGTTG+TGG | + | chr1_3:6302852-6302871 | Msa0099930:CDS | 50.0% | |
| TGAAACATGGACCGTTGTGG+AGG | + | chr1_3:6302855-6302874 | Msa0099930:CDS | 50.0% | |
| TGACTGATGAACCAGACGTG+GGG | - | chr1_3:6302900-6302919 | None:intergenic | 50.0% | |
| GGCAATATCTCAGCACGGTT+CGG | + | chr1_3:6303357-6303376 | Msa0099930:intron | 50.0% | |
| ! | TGGAAGCACATTGCAACTGC+AGG | - | chr1_3:6303449-6303468 | None:intergenic | 50.0% |
| GGGCCTAATCTCATCCAATG+TGG | - | chr1_3:6303469-6303488 | None:intergenic | 50.0% | |
| CTATCACGTCTCCCACTACT+GGG | + | chr1_3:6303620-6303639 | Msa0099930:intron | 50.0% | |
| AATGGAGCATGCCCAGTAGT+GGG | - | chr1_3:6303634-6303653 | None:intergenic | 50.0% | |
| AAATGGAGCATGCCCAGTAG+TGG | - | chr1_3:6303635-6303654 | None:intergenic | 50.0% | |
| !! | CCTTACAAAACCGGCTTGCA+AGG | - | chr1_3:6303751-6303770 | None:intergenic | 50.0% |
| !! | CCTTGCAAGCCGGTTTTGTA+AGG | + | chr1_3:6303748-6303767 | Msa0099930:intron | 50.0% |
| AGAGGAACGTGTTGCATCAG+TGG | - | chr1_3:6304041-6304060 | None:intergenic | 50.0% | |
| GCCAATAGGGCAATGAAAGC+TGG | + | chr1_3:6304279-6304298 | Msa0099930:CDS | 50.0% | |
| CCCCCCATCAATAATACAGC+AGG | - | chr1_3:6305298-6305317 | None:intergenic | 50.0% | |
| GCTGTATTATTGATGGGGGG+AGG | + | chr1_3:6305298-6305317 | Msa0099930:CDS | 50.0% | |
| TTATTGATGGGGGGAGGTGA+AGG | + | chr1_3:6305304-6305323 | Msa0099930:CDS | 50.0% | |
| GTCCCATTGAAGCTACTGCT+CGG | + | chr1_3:6305332-6305351 | Msa0099930:CDS | 50.0% | |
| TCCCATTGAAGCTACTGCTC+GGG | + | chr1_3:6305333-6305352 | Msa0099930:CDS | 50.0% | |
| ATTGCAGAGGCCATGATTCG+AGG | + | chr1_3:6306215-6306234 | Msa0099930:CDS | 50.0% | |
| AATAGGCAGGCCTCGAATCA+TGG | - | chr1_3:6306228-6306247 | None:intergenic | 50.0% | |
| TGAGAACCACATTACCTGCC+CGG | - | chr1_3:6306270-6306289 | None:intergenic | 50.0% | |
| GCTATGGCGGTAGAGCATAT+AGG | - | chr1_3:6306522-6306541 | None:intergenic | 50.0% | |
| ACGTGGGGCAGTTCCATAGT+AGG | - | chr1_3:6302885-6302904 | None:intergenic | 55.0% | |
| ! | GTAGTGGGAGACGTGATAGC+TGG | - | chr1_3:6303619-6303638 | None:intergenic | 55.0% |
| GCTATCACGTCTCCCACTAC+TGG | + | chr1_3:6303619-6303638 | Msa0099930:intron | 55.0% | |
| TGAGCACGTGCCATCCAACA+TGG | + | chr1_3:6304123-6304142 | Msa0099930:CDS | 55.0% | |
| TGGCATACCTTTGGCCGAAC+AGG | - | chr1_3:6304363-6304382 | None:intergenic | 55.0% | |
| GCCCGAGCAGTAGCTTCAAT+GGG | - | chr1_3:6305337-6305356 | None:intergenic | 55.0% | |
| TGCCCGAGCAGTAGCTTCAA+TGG | - | chr1_3:6305338-6305357 | None:intergenic | 55.0% | |
| !! | TTGCTTTTGTAGGCTGGCCC+AGG | + | chr1_3:6306188-6306207 | Msa0099930:intron | 55.0% |
| !! | TGCTTTTGTAGGCTGGCCCA+GGG | + | chr1_3:6306189-6306208 | Msa0099930:intron | 55.0% |
| TGGCCTCTGCAATTGTCCCT+GGG | - | chr1_3:6306208-6306227 | None:intergenic | 55.0% | |
| ATGGCCTCTGCAATTGTCCC+TGG | - | chr1_3:6306209-6306228 | None:intergenic | 55.0% | |
| ACATTGCCGGGCAGGTAATG+TGG | + | chr1_3:6306261-6306280 | Msa0099930:intron | 55.0% | |
| CTATGGAACTGCCCCACGTC+TGG | + | chr1_3:6302886-6302905 | Msa0099930:CDS | 60.0% | |
| GTGGGAGACGTGATAGCTGG+TGG | - | chr1_3:6303616-6303635 | None:intergenic | 60.0% | |
| GCGTCTCTCACCTTGCAAGC+CGG | + | chr1_3:6303738-6303757 | Msa0099930:intron | 60.0% | |
| ! | ATGGGGGGAGGTGAAGGCAT+GGG | + | chr1_3:6305310-6305329 | Msa0099930:CDS | 60.0% |
| GAAGCTACTGCTCGGGCACT+TGG | + | chr1_3:6305340-6305359 | Msa0099930:CDS | 60.0% | |
| AATGACGAGGGGGTTCCCAC+AGG | + | chr1_3:6305373-6305392 | Msa0099930:CDS | 60.0% | |
| TGGCCCAGGGACAATTGCAG+AGG | + | chr1_3:6306202-6306221 | Msa0099930:CDS | 60.0% | |
| GATGGGGGGAGGTGAAGGCA+TGG | + | chr1_3:6305309-6305328 | Msa0099930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 6302759 | 6307133 | 6302759 | ID=Msa0099930;Name=Msa0099930 |
| chr1_3 | mRNA | 6302759 | 6307133 | 6302759 | ID=Msa0099930-mRNA-1;Parent=Msa0099930;Name=Msa0099930-mRNA-1;_AED=0.24;_eAED=0.24;_QI=13|1|1|1|1|1|7|164|359 |
| chr1_3 | exon | 6302759 | 6302953 | 6302759 | ID=Msa0099930-mRNA-1:exon:2378;Parent=Msa0099930-mRNA-1 |
| chr1_3 | exon | 6303983 | 6304144 | 6303983 | ID=Msa0099930-mRNA-1:exon:2379;Parent=Msa0099930-mRNA-1 |
| chr1_3 | exon | 6304233 | 6304374 | 6304233 | ID=Msa0099930-mRNA-1:exon:2380;Parent=Msa0099930-mRNA-1 |
| chr1_3 | exon | 6305256 | 6305474 | 6305256 | ID=Msa0099930-mRNA-1:exon:2381;Parent=Msa0099930-mRNA-1 |
| chr1_3 | exon | 6306056 | 6306118 | 6306056 | ID=Msa0099930-mRNA-1:exon:2382;Parent=Msa0099930-mRNA-1 |
| chr1_3 | exon | 6306200 | 6306274 | 6306200 | ID=Msa0099930-mRNA-1:exon:2383;Parent=Msa0099930-mRNA-1 |
| chr1_3 | exon | 6306733 | 6307133 | 6306733 | ID=Msa0099930-mRNA-1:exon:2384;Parent=Msa0099930-mRNA-1 |
| chr1_3 | five_prime_UTR | 6302759 | 6302771 | 6302759 | ID=Msa0099930-mRNA-1:five_prime_utr;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6302772 | 6302953 | 6302772 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6303983 | 6304144 | 6303983 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6304233 | 6304374 | 6304233 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6305256 | 6305474 | 6305256 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6306056 | 6306118 | 6306056 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6306200 | 6306274 | 6306200 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | CDS | 6306733 | 6306969 | 6306733 | ID=Msa0099930-mRNA-1:cds;Parent=Msa0099930-mRNA-1 |
| chr1_3 | three_prime_UTR | 6306970 | 6307133 | 6306970 | ID=Msa0099930-mRNA-1:three_prime_utr;Parent=Msa0099930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
