AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101600 MtrunA17_Chr1g0154191 92.130 216 17 0 1 216 1 216 2.42e-146 412
Msa0101600 MtrunA17_Chr1g0154171 73.853 218 44 4 5 216 6 216 2.10e-105 308
Msa0101600 MtrunA17_Chr1g0154241 63.052 249 49 5 1 211 1 244 7.57e-98 285
Msa0101600 MtrunA17_Chr1g0154211 59.919 247 66 3 2 216 3 248 1.81e-93 279
Msa0101600 MtrunA17_Chr1g0154251 60.776 232 48 5 3 192 8 238 1.98e-89 272
Msa0101600 MtrunA17_Chr1g0154131 71.875 192 29 4 6 196 168 335 2.21e-88 268
Msa0101600 MtrunA17_Chr1g0154131 69.643 168 50 1 4 171 8 174 1.06e-76 238
Msa0101600 MtrunA17_Chr1g0154111 74.432 176 41 3 4 178 8 180 1.52e-86 267
Msa0101600 MtrunA17_Chr1g0154111 55.500 200 67 6 37 216 368 565 2.05e-53 180
Msa0101600 MtrunA17_Chr1g0154101 77.914 163 36 0 3 165 6 168 4.10e-85 268
Msa0101600 MtrunA17_Chr1g0154101 51.890 291 58 4 6 216 168 456 6.63e-84 265
Msa0101600 MtrunA17_Chr1g0154161 81.507 146 22 1 5 150 13 153 2.21e-83 250
Msa0101600 MtrunA17_Chr1g0154071 66.082 171 53 2 10 180 145 310 2.38e-73 230
Msa0101600 MtrunA17_Chr1g0154071 77.941 136 29 1 2 137 8 142 1.32e-67 215
Msa0101600 MtrunA17_Chr1g0154151 61.905 189 48 5 37 216 19 192 5.89e-68 211
Msa0101600 MtrunA17_Chr3g0131891 38.144 97 55 1 16 112 18 109 7.85e-15 72.0
Msa0101600 MtrunA17_Chr1g0154041 34.951 103 65 2 21 123 15 115 1.40e-14 72.0
Msa0101600 MtrunA17_Chr7g0233571 34.694 98 64 0 15 112 3 100 1.80e-14 69.7
Msa0101600 MtrunA17_Chr7g0233561 33.696 92 61 0 20 111 16 107 2.56e-14 70.5
Msa0101600 MtrunA17_Chr7g0233531 29.771 131 70 1 38 168 2 110 3.69e-13 67.0
Msa0101600 MtrunA17_Chr3g0077461 32.609 92 62 0 21 112 236 327 6.54e-12 63.9
Msa0101600 MtrunA17_Chr3g0077411 32.990 97 64 1 20 115 260 356 1.74e-11 62.8
Msa0101600 MtrunA17_Chr5g0429931 38.462 78 48 0 38 115 11 88 3.41e-11 60.8
Msa0101600 MtrunA17_Chr5g0419201 29.825 114 77 1 33 146 27 137 4.66e-11 59.7
Msa0101600 MtrunA17_Chr3g0077451 37.662 77 48 0 36 112 10 86 7.74e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101600 AT4G33280.2 53.788 132 58 2 8 138 11 140 3.53e-45 152
Msa0101600 AT4G33280.1 50.658 152 67 4 8 157 11 156 3.77e-44 150
Msa0101600 AT4G33280.3 53.788 132 58 2 8 138 11 140 4.29e-44 152
Msa0101600 AT4G34400.2 37.273 110 63 3 15 121 8 114 4.19e-19 85.1
Msa0101600 AT4G34400.1 37.273 110 63 3 15 121 8 114 4.19e-19 85.1
Msa0101600 AT5G60130.5 41.573 89 47 2 36 119 27 115 9.83e-15 71.2
Msa0101600 AT5G60130.3 41.573 89 47 2 36 119 1 89 1.15e-14 71.6
Msa0101600 AT5G66980.1 45.122 82 41 1 34 111 21 102 1.46e-14 71.6
Msa0101600 AT5G60130.2 41.573 89 47 2 36 119 27 115 1.49e-14 71.2
Msa0101600 AT5G60130.4 41.573 89 47 2 36 119 24 112 1.77e-14 71.2
Msa0101600 AT5G60130.1 41.573 89 47 2 36 119 27 115 1.79e-14 71.2
Msa0101600 AT3G06220.1 31.633 98 64 2 22 119 11 105 1.87e-14 68.9
Msa0101600 AT3G18990.2 35.165 91 59 0 22 112 6 96 1.27e-13 69.3
Msa0101600 AT3G18990.1 35.165 91 59 0 22 112 6 96 1.43e-13 68.9
Msa0101600 AT3G06160.5 26.012 173 119 4 22 188 11 180 1.92e-13 68.6
Msa0101600 AT3G06160.4 26.012 173 119 4 22 188 11 180 1.92e-13 68.6
Msa0101600 AT3G06160.3 26.012 173 119 4 22 188 11 180 1.92e-13 68.6
Msa0101600 AT3G06160.1 26.012 173 119 4 22 188 26 195 2.03e-13 68.6
Msa0101600 AT3G06160.2 26.012 173 119 4 22 188 70 239 3.30e-13 68.2
Msa0101600 AT1G49475.1 36.264 91 57 1 22 112 34 123 2.43e-12 63.5
Msa0101600 AT3G53310.1 36.709 79 50 0 34 112 22 100 6.83e-12 63.5
Msa0101600 AT3G18960.2 36.842 95 48 2 35 118 32 125 1.46e-11 61.6
Msa0101600 AT3G18960.1 36.842 95 48 2 35 118 32 125 2.25e-11 61.2
Msa0101600 AT4G01580.1 35.789 95 49 2 35 118 32 125 9.96e-11 59.3

Find 88 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGATAATAACATTAAATT+TGG 0.154377 1_3:+8238051 Msa0101600:three_prime_UTR
CACAGACTTGTTTGTGTCCT+TGG 0.171497 1_3:-8236025 None:intergenic
CAACTCCACTAGGACCTTTA+AGG 0.178570 1_3:-8235771 None:intergenic
GTGATGCAAGTTCATATATC+TGG 0.223627 1_3:+8238108 Msa0101600:three_prime_UTR
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1_3:+8235757 Msa0101600:CDS
CGGTGGTGCTATGAAGAAAT+TGG 0.266641 1_3:-8234708 None:intergenic
GTGATGATGATACAGCTAAT+TGG 0.290978 1_3:-8238325 None:intergenic
CCTCCCAATTAACTGGTAAA+AGG 0.296250 1_3:+8236145 Msa0101600:CDS
CTTGGGAGGAAGAGATTTAC+TGG 0.300092 1_3:+8234659 Msa0101600:CDS
GAAGGTCTTGACCAGCAAAA+TGG 0.302980 1_3:+8238141 Msa0101600:three_prime_UTR
TTATGAGAAGTAGCTGCTTT+TGG 0.305223 1_3:-8236210 None:intergenic
ACAAGCGTAAATTTATTAAC+AGG 0.306921 1_3:-8236177 None:intergenic
TGAAATGGATGAACTGAAAA+TGG 0.343707 1_3:-8234684 None:intergenic
TATCAATGTTTCACGTACTA+TGG 0.347323 1_3:+8237689 Msa0101600:three_prime_UTR
AATCTCTTCCTCCCAAGATT+TGG 0.351389 1_3:-8234653 None:intergenic
AATTGGGAGGGAGCTGCAAC+AGG 0.351758 1_3:-8236132 None:intergenic
CTCTCTGCTTCTCTTTGAAA+TGG 0.357648 1_3:+8234621 Msa0101600:exon
ACTGTTCTCCCTTTAGCATA+TGG 0.359682 1_3:-8237961 None:intergenic
TACAAGTTGTTGTTGAAAAT+CGG 0.364741 1_3:-8234728 None:intergenic
CGCCATTGTACTTGAAGAAA+AGG 0.367579 1_3:-8235891 None:intergenic
TCTTCCTCGTGAACTGTTGA+AGG 0.369672 1_3:+8234544 Msa0101600:five_prime_UTR
GCATCAGCCATGCACTTCTC+AGG 0.387871 1_3:-8236093 None:intergenic
TGTGCAGCAGAGAAATGATA+TGG 0.401325 1_3:-8237868 None:intergenic
TCATAAGAGAGCACATGATT+TGG 0.411083 1_3:+8236227 Msa0101600:CDS
GCAGCTCCCTCCCAATTAAC+TGG 0.415607 1_3:+8236138 Msa0101600:CDS
TTTGTTAAAATATTTAAAAC+CGG 0.417027 1_3:+8237663 Msa0101600:three_prime_UTR
CTGTTCTCCCTTTAGCATAT+GGG 0.419113 1_3:-8237960 None:intergenic
AAGGTCTTGACCAGCAAAAT+GGG 0.444958 1_3:+8238142 Msa0101600:three_prime_UTR
AACTCTATCCCATATGCTAA+AGG 0.447966 1_3:+8237952 Msa0101600:three_prime_UTR
TGGTAGGAAGCACCAAATCT+TGG 0.448666 1_3:+8234641 Msa0101600:CDS
TTTAACAAAATATGGAAAAG+AGG 0.454776 1_3:-8237649 None:intergenic
TATGAAGAAATTGGGTGAAA+TGG 0.456523 1_3:-8234699 None:intergenic
CAAGAACGTTAGCAGGTAAA+CGG 0.456745 1_3:-8238198 None:intergenic
GAAAAGAGGAGGTAAATGAT+TGG 0.467251 1_3:-8237635 None:intergenic
TGATGATGATACAGCTAATT+GGG 0.467582 1_3:-8238324 None:intergenic
TGATGCAAGTTCATATATCT+GGG 0.470555 1_3:+8238109 Msa0101600:three_prime_UTR
GGTAGGAAGCACCAAATCTT+GGG 0.471144 1_3:+8234642 Msa0101600:CDS
CAAAGGTACAAAGCTAAAGT+AGG 0.471868 1_3:-8234576 None:intergenic
AACTCCACTAGGACCTTTAA+GGG 0.479312 1_3:-8235770 None:intergenic
AAACCAACACATATGCTAAA+CGG 0.480555 1_3:+8237986 Msa0101600:three_prime_UTR
GATACTGTTTACTTCACAAA+CGG 0.486582 1_3:+8235823 Msa0101600:CDS
ACTCTATCCCATATGCTAAA+GGG 0.488518 1_3:+8237953 Msa0101600:three_prime_UTR
AATAAATTTACGCTTGTCCT+CGG 0.500280 1_3:+8236183 Msa0101600:CDS
TTGGGAGGGAGCTGCAACAG+GGG 0.501107 1_3:-8236130 None:intergenic
CTTGACCAGCAAAATGGGAA+TGG 0.504154 1_3:+8238147 Msa0101600:three_prime_UTR
CTTCCTCGTGAACTGTTGAA+GGG 0.506288 1_3:+8234545 Msa0101600:five_prime_UTR
GCAATTCAAGAGGCGAATGT+TGG 0.508378 1_3:+8237923 Msa0101600:three_prime_UTR
TTGACCAGCAAAATGGGAAT+GGG 0.509143 1_3:+8238148 Msa0101600:three_prime_UTR
AAAAGAGGAGGTAAATGATT+GGG 0.509472 1_3:-8237634 None:intergenic
CTGCTTCTCTTTGAAATGGT+AGG 0.526272 1_3:+8234625 Msa0101600:exon
GGTCATGCTCAAACCGAACA+AGG 0.526750 1_3:+8235991 Msa0101600:CDS
TAAGAGAGCACATGATTTGG+TGG 0.528009 1_3:+8236230 Msa0101600:CDS
CAAGTTCATATATCTGGGGT+TGG 0.532218 1_3:+8238114 Msa0101600:three_prime_UTR
CATCAGCCATGCACTTCTCA+GGG 0.533895 1_3:-8236092 None:intergenic
AATGTTATTATCACGAACAA+AGG 0.534520 1_3:-8238043 None:intergenic
ATATCTGGGGTTGGAAAGGA+AGG 0.539398 1_3:+8238123 Msa0101600:three_prime_UTR
CTGTTTACTTCACAAACGGT+TGG 0.539585 1_3:+8235827 Msa0101600:CDS
TCTCCGTTTAGCATATGTGT+TGG 0.547322 1_3:-8237989 None:intergenic
TCATATATCTGGGGTTGGAA+AGG 0.547674 1_3:+8238119 Msa0101600:three_prime_UTR
GAGAGAGGGAAAGGGTTCAA+AGG 0.552787 1_3:-8234593 None:intergenic
TCACAAACAAGAACGTTAGC+AGG 0.554809 1_3:-8238205 None:intergenic
GGAGGGAGCTGCAACAGGGG+TGG 0.557934 1_3:-8236127 None:intergenic
TGGACTTAGTTTCTGTGAGA+AGG 0.559379 1_3:+8235942 Msa0101600:CDS
GGTGGTGCTATGAAGAAATT+GGG 0.559533 1_3:-8234707 None:intergenic
AAAGGTACAAAGCTAAAGTA+GGG 0.563924 1_3:-8234575 None:intergenic
GCATCCATCGTGCATAGAAG+TGG 0.570003 1_3:+8237588 Msa0101600:three_prime_UTR
GTTACGCTTCGCAATTCAAG+AGG 0.574465 1_3:+8237913 Msa0101600:three_prime_UTR
TGCTTCCCCTGAGAAGTGCA+TGG 0.578286 1_3:+8236086 Msa0101600:CDS
ATATTCCACACAACTCCACT+AGG 0.578782 1_3:-8235781 None:intergenic
AACAAAATATGGAAAAGAGG+AGG 0.585641 1_3:-8237646 None:intergenic
GTCATGCTCAAACCGAACAA+GGG 0.590087 1_3:+8235992 Msa0101600:CDS
ATTGGGAGGGAGCTGCAACA+GGG 0.596413 1_3:-8236131 None:intergenic
ACGTGAAACATTGATATCGC+CGG 0.611796 1_3:-8237682 None:intergenic
CTTCCCACTTCTATGCACGA+TGG 0.624258 1_3:-8237592 None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG 0.624686 1_3:+8235776 Msa0101600:CDS
CATCCATCGTGCATAGAAGT+GGG 0.629073 1_3:+8237589 Msa0101600:three_prime_UTR
CATCGTGCATAGAAGTGGGA+AGG 0.630861 1_3:+8237593 Msa0101600:three_prime_UTR
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1_3:+8235766 Msa0101600:CDS
TCATGCTCAAACCGAACAAG+GGG 0.635196 1_3:+8235993 Msa0101600:CDS
CAGTTCACGAGGAAGATGAA+AGG 0.657063 1_3:-8234537 None:intergenic
AAGTTGTTGTTGAAAATCGG+TGG 0.662291 1_3:-8234725 None:intergenic
AGGAAGCACCAAATCTTGGG+AGG 0.669254 1_3:+8234645 Msa0101600:CDS
AAACCCTTCAACAGTTCACG+AGG 0.670720 1_3:-8234548 None:intergenic
CGACATGAACTGAAATGCAG+CGG 0.675891 1_3:-8238385 None:intergenic
CAAGGACACAAACAAGTCTG+TGG 0.678532 1_3:+8236026 Msa0101600:CDS
ATCAGCCATGCACTTCTCAG+GGG 0.683978 1_3:-8236091 None:intergenic
CATGCTCAAACCGAACAAGG+GGG 0.761893 1_3:+8235994 Msa0101600:CDS
GATGCAAGTTCATATATCTG+GGG 0.765392 1_3:+8238110 Msa0101600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAACAAAATTTAAA+AGG - chr1_3:8234896-8234915 None:intergenic 10.0%
!! ATAATTAAGTAAATTGTTTA+AGG + chr1_3:8235117-8235136 Msa0101600:intron 10.0%
!!! TTTGTTAAAATATTTAAAAC+CGG + chr1_3:8237663-8237682 Msa0101600:three_prime_UTR 10.0%
!!! TTCATTTTTAATTTTCAACA+TGG - chr1_3:8234782-8234801 None:intergenic 15.0%
!! GTATAAAATATAAAAAACCA+TGG - chr1_3:8234999-8235018 None:intergenic 15.0%
!! AATAAAATTGTTAATTAACG+TGG + chr1_3:8235266-8235285 Msa0101600:intron 15.0%
!! AAAAAAAAAAATGAAAAAGG+AGG - chr1_3:8236289-8236308 None:intergenic 15.0%
!! TTATAATTAATACTGGTAAA+AGG - chr1_3:8236510-8236529 None:intergenic 15.0%
!!! TATAACTAACATTTATTTCT+CGG + chr1_3:8236543-8236562 Msa0101600:intron 15.0%
!!! AATCATCAGTTTTAAATAAA+AGG - chr1_3:8237545-8237564 None:intergenic 15.0%
!! CAAAAATTACTTAAAGATAA+GGG - chr1_3:8237775-8237794 None:intergenic 15.0%
!! ACAAAAATTACTTAAAGATA+AGG - chr1_3:8237776-8237795 None:intergenic 15.0%
!!! TTTTTAATTTTCAACATGGT+AGG - chr1_3:8234778-8234797 None:intergenic 20.0%
!! ACAAACAAAATTTAAAAGGT+GGG - chr1_3:8234892-8234911 None:intergenic 20.0%
!! AACAAACAAAATTTAAAAGG+TGG - chr1_3:8234893-8234912 None:intergenic 20.0%
!!! TGATTTTCTCAAATAATTAG+CGG + chr1_3:8235402-8235421 Msa0101600:intron 20.0%
!! AATAATTATGTTTAGCTGTT+AGG + chr1_3:8235606-8235625 Msa0101600:intron 20.0%
!!! GAAATTTGTATTTTAATTGC+AGG + chr1_3:8235693-8235712 Msa0101600:intron 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG - chr1_3:8235724-8235743 None:intergenic 20.0%
!!! TTTGAAGTTTTAATCTTTGA+TGG + chr1_3:8235922-8235941 Msa0101600:CDS 20.0%
!! TTTAACAAAATATGGAAAAG+AGG - chr1_3:8237652-8237671 None:intergenic 20.0%
!! AGAGATAAAACAACATAATT+GGG - chr1_3:8237749-8237768 None:intergenic 20.0%
!! CGTGATAATAACATTAAATT+TGG + chr1_3:8238051-8238070 Msa0101600:three_prime_UTR 20.0%
!! TACAAGTTGTTGTTGAAAAT+CGG - chr1_3:8234731-8234750 None:intergenic 25.0%
!!! AAAGTTTTCATTTTTTGCCA+TGG + chr1_3:8234979-8234998 Msa0101600:intron 25.0%
!! AAATTGTTTAAGGTTCTGTT+TGG + chr1_3:8235127-8235146 Msa0101600:intron 25.0%
!! AATTGTTTAAGGTTCTGTTT+GGG + chr1_3:8235128-8235147 Msa0101600:intron 25.0%
! TACAGTGTAATTATATGTGT+CGG - chr1_3:8235377-8235396 None:intergenic 25.0%
! TGAGATTAAAACATACATTG+AGG - chr1_3:8235669-8235688 None:intergenic 25.0%
!!! ATGTATGTTTTAATCTCAGA+TGG + chr1_3:8235671-8235690 Msa0101600:intron 25.0%
!!! TCTTATTTTGTTGGAAAATG+TGG + chr1_3:8235970-8235989 Msa0101600:CDS 25.0%
!!! AATCAATACTACTTTTGATG+CGG + chr1_3:8236053-8236072 Msa0101600:CDS 25.0%
! ACAAGCGTAAATTTATTAAC+AGG - chr1_3:8236180-8236199 None:intergenic 25.0%
! ATTAATACTGGTAAAAGGAA+GGG - chr1_3:8236505-8236524 None:intergenic 25.0%
! AATTAATACTGGTAAAAGGA+AGG - chr1_3:8236506-8236525 None:intergenic 25.0%
! CTGTTACTAAACAAACTTAA+AGG - chr1_3:8236618-8236637 None:intergenic 25.0%
!! AAGTTTGTTTAGTAACAGAT+AGG + chr1_3:8236620-8236639 Msa0101600:intron 25.0%
! CTGTTACAAAACAAACTTAA+AGG - chr1_3:8237228-8237247 None:intergenic 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG + chr1_3:8236680-8236699 Msa0101600:intron 25.0%
! TATGAATAAAAATGGAGTCA+GGG - chr1_3:8236831-8236850 None:intergenic 25.0%
!! AGCTTTGGTATGAATAAAAA+TGG - chr1_3:8236839-8236858 None:intergenic 25.0%
! GAGTTGAGTATATTTATCAT+CGG + chr1_3:8236950-8236969 Msa0101600:intron 25.0%
! CTGATTCTTCAAAAAAAACT+GGG + chr1_3:8237095-8237114 Msa0101600:intron 25.0%
! CTGTTACAAAACAAACTTAA+AGG + chr1_3:8237228-8237247 Msa0101600:intron 25.0%
! GTTTGATGTTTGTAACATAT+AGG - chr1_3:8237255-8237274 None:intergenic 25.0%
! GTTACAAACATCAAACTTAA+AGG + chr1_3:8237259-8237278 Msa0101600:intron 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG - chr1_3:8236680-8236699 None:intergenic 25.0%
! CTGTTACAAAACAAACTTAA+AGG + chr1_3:8237228-8237247 Msa0101600:intron 25.0%
!! TAAGCTCTGACATAAATATA+AGG - chr1_3:8237521-8237540 None:intergenic 25.0%
! GTAAATGAAGAATCACAAAA+GGG - chr1_3:8237724-8237743 None:intergenic 25.0%
! GAGAGATAAAACAACATAAT+TGG - chr1_3:8237750-8237769 None:intergenic 25.0%
! AATGTTATTATCACGAACAA+AGG - chr1_3:8238046-8238065 None:intergenic 25.0%
!! ACAGAAATCAATTTTCAATG+AGG + chr1_3:8238229-8238248 Msa0101600:three_prime_UTR 25.0%
! AAAGGTACAAAGCTAAAGTA+GGG - chr1_3:8234578-8234597 None:intergenic 30.0%
TGAAATGGATGAACTGAAAA+TGG - chr1_3:8234687-8234706 None:intergenic 30.0%
TATGAAGAAATTGGGTGAAA+TGG - chr1_3:8234702-8234721 None:intergenic 30.0%
CTAATATGAACACTTCAGAA+GGG - chr1_3:8234806-8234825 None:intergenic 30.0%
! GAAGTGTTCATATTAGGATT+TGG + chr1_3:8234810-8234829 Msa0101600:intron 30.0%
ATTTACACAGATAGTGTTTG+CGG - chr1_3:8235226-8235245 None:intergenic 30.0%
CATTAATGACCTATGAAGTA+CGG + chr1_3:8235289-8235308 Msa0101600:intron 30.0%
ACTATATTACAACTGTGTGA+GGG + chr1_3:8235478-8235497 Msa0101600:intron 30.0%
AATTTGAACTTTGTACCTTG+AGG + chr1_3:8235501-8235520 Msa0101600:intron 30.0%
ACATGATTTACATACACTTG+AGG - chr1_3:8235553-8235572 None:intergenic 30.0%
GATACTGTTTACTTCACAAA+CGG + chr1_3:8235823-8235842 Msa0101600:CDS 30.0%
! TTCCTTTTCTTCAAGTACAA+TGG + chr1_3:8235889-8235908 Msa0101600:CDS 30.0%
!! ATCAATACTACTTTTGATGC+GGG + chr1_3:8236054-8236073 Msa0101600:CDS 30.0%
! GATCCTTTTACCAGTTAATT+GGG - chr1_3:8236151-8236170 None:intergenic 30.0%
! TGATCCTTTTACCAGTTAAT+TGG - chr1_3:8236152-8236171 None:intergenic 30.0%
AATAAATTTACGCTTGTCCT+CGG + chr1_3:8236183-8236202 Msa0101600:CDS 30.0%
! CTTTGCTCTGACTTTTAAAT+GGG - chr1_3:8236393-8236412 None:intergenic 30.0%
GTTACAAACGTCAAACTTAA+AGG - chr1_3:8237319-8237338 None:intergenic 30.0%
GTTTGACGTTTGTAACATAT+AGG + chr1_3:8236591-8236610 Msa0101600:intron 30.0%
GTTACAAACGTCAAACTTAA+AGG - chr1_3:8237319-8237338 None:intergenic 30.0%
GTATGAATAAAAATGGAGTC+AGG - chr1_3:8236832-8236851 None:intergenic 30.0%
AATAATGCTGGTATTACACT+TGG - chr1_3:8236885-8236904 None:intergenic 30.0%
!!! CCAGTTTTTTTTGAAGAATC+AGG - chr1_3:8237097-8237116 None:intergenic 30.0%
CCTGATTCTTCAAAAAAAAC+TGG + chr1_3:8237094-8237113 Msa0101600:intron 30.0%
AAAAAAACTGGGTGTAGTAA+AGG + chr1_3:8237106-8237125 Msa0101600:intron 30.0%
GTTTGACGTTTGTAACATAT+AGG - chr1_3:8236591-8236610 None:intergenic 30.0%
GTTACAAACGTCAAACTTAA+AGG + chr1_3:8237319-8237338 Msa0101600:intron 30.0%
AATGAAGGGAAAGGTTAAAA+TGG - chr1_3:8237411-8237430 None:intergenic 30.0%
AAAAGAGGAGGTAAATGATT+GGG - chr1_3:8237637-8237656 None:intergenic 30.0%
AACAAAATATGGAAAAGAGG+AGG - chr1_3:8237649-8237668 None:intergenic 30.0%
TATCAATGTTTCACGTACTA+TGG + chr1_3:8237689-8237708 Msa0101600:three_prime_UTR 30.0%
GGTAAATGAAGAATCACAAA+AGG - chr1_3:8237725-8237744 None:intergenic 30.0%
GATAAAACAACATAATTGGG+AGG - chr1_3:8237746-8237765 None:intergenic 30.0%
AAACCAACACATATGCTAAA+CGG + chr1_3:8237986-8238005 Msa0101600:three_prime_UTR 30.0%
TGATGCAAGTTCATATATCT+GGG + chr1_3:8238109-8238128 Msa0101600:three_prime_UTR 30.0%
! TGATGATGATACAGCTAATT+GGG - chr1_3:8238327-8238346 None:intergenic 30.0%
! CAAAGGTACAAAGCTAAAGT+AGG - chr1_3:8234579-8234598 None:intergenic 35.0%
! AAGTTGTTGTTGAAAATCGG+TGG - chr1_3:8234728-8234747 None:intergenic 35.0%
CCTAATATGAACACTTCAGA+AGG - chr1_3:8234807-8234826 None:intergenic 35.0%
!! CCTTCTGAAGTGTTCATATT+AGG + chr1_3:8234804-8234823 Msa0101600:intron 35.0%
! GCTGTTCATTATTCTTTTCC+TGG + chr1_3:8235198-8235217 Msa0101600:intron 35.0%
!! TTATATGTGTCGGTGTCTTT+TGG - chr1_3:8235367-8235386 None:intergenic 35.0%
TCTCAAATAATTAGCGGTGT+TGG + chr1_3:8235408-8235427 Msa0101600:intron 35.0%
ATAGTCATGACTATGAAGCA+CGG - chr1_3:8235463-8235482 None:intergenic 35.0%
GACTATATTACAACTGTGTG+AGG + chr1_3:8235477-8235496 Msa0101600:intron 35.0%
!!! AAGGCAGCTTCTTATTTTGT+TGG + chr1_3:8235961-8235980 Msa0101600:CDS 35.0%
! CTTTTACCAGTTAATTGGGA+GGG - chr1_3:8236147-8236166 None:intergenic 35.0%
!! TTATGAGAAGTAGCTGCTTT+TGG - chr1_3:8236213-8236232 None:intergenic 35.0%
! TCATAAGAGAGCACATGATT+TGG + chr1_3:8236227-8236246 Msa0101600:CDS 35.0%
! GCTTTGCTCTGACTTTTAAA+TGG - chr1_3:8236394-8236413 None:intergenic 35.0%
TAAAAGGAAGGGAAAGACTT+AGG - chr1_3:8236494-8236513 None:intergenic 35.0%
GTTTGACGTTTGTAACATAC+AGG + chr1_3:8236651-8236670 Msa0101600:intron 35.0%
GCACACTGTTACAAAGTTAA+AGG - chr1_3:8236707-8236726 None:intergenic 35.0%
TGAGAATTGGGGAAATGTAA+GGG - chr1_3:8236806-8236825 None:intergenic 35.0%
TTGAGAATTGGGGAAATGTA+AGG - chr1_3:8236807-8236826 None:intergenic 35.0%
GATTTGACGAATTCAAGCTT+TGG - chr1_3:8236854-8236873 None:intergenic 35.0%
GCTTGAATTCGTCAAATCAA+TGG + chr1_3:8236856-8236875 Msa0101600:intron 35.0%
TGTAATACCAGCATTATTGC+AGG + chr1_3:8236887-8236906 Msa0101600:intron 35.0%
GTAATACCAGCATTATTGCA+GGG + chr1_3:8236888-8236907 Msa0101600:intron 35.0%
TAATACCAGCATTATTGCAG+GGG + chr1_3:8236889-8236908 Msa0101600:intron 35.0%
TATTGCCTTTGCAATGTACT+TGG + chr1_3:8236988-8237007 Msa0101600:intron 35.0%
GATTACCAAGTACATTGCAA+AGG - chr1_3:8236996-8237015 None:intergenic 35.0%
! TGCAATGTACTTGGTAATCT+TGG + chr1_3:8236997-8237016 Msa0101600:intron 35.0%
TCCAACAATTAGATTTCGTG+TGG + chr1_3:8237036-8237055 Msa0101600:intron 35.0%
ACCACACGAAATCTAATTGT+TGG - chr1_3:8237040-8237059 None:intergenic 35.0%
AACTGTTGTCTTCTTTCCTT+CGG + chr1_3:8237062-8237081 Msa0101600:intron 35.0%
!!! TCACGTCAGCGTTTTTTTTA+CGG + chr1_3:8237153-8237172 Msa0101600:intron 35.0%
! TTTTACGGTGAGTTAACAGA+AGG + chr1_3:8237168-8237187 Msa0101600:intron 35.0%
TAAAGGCTTAATTACACCAC+AGG - chr1_3:8237346-8237365 None:intergenic 35.0%
AGAGAGATGGAGAGAAATAA+AGG - chr1_3:8237363-8237382 None:intergenic 35.0%
TTTAACCTTTCCCTTCATTC+TGG + chr1_3:8237412-8237431 Msa0101600:intron 35.0%
TTAACCTTTCCCTTCATTCT+GGG + chr1_3:8237413-8237432 Msa0101600:intron 35.0%
!!! TTTTTGAGACCCAGAATGAA+GGG - chr1_3:8237425-8237444 None:intergenic 35.0%
!!! TTTTTTGAGACCCAGAATGA+AGG - chr1_3:8237426-8237445 None:intergenic 35.0%
!! AGACAAGTATCAGTTTGCTA+GGG - chr1_3:8237473-8237492 None:intergenic 35.0%
AACTGTTCAATTTCACACAG+AGG + chr1_3:8237566-8237585 Msa0101600:intron 35.0%
GAAAAGAGGAGGTAAATGAT+TGG - chr1_3:8237638-8237657 None:intergenic 35.0%
! TAACTTCTGTTTTGCAGTCA+GGG - chr1_3:8237897-8237916 None:intergenic 35.0%
AACTCTATCCCATATGCTAA+AGG + chr1_3:8237952-8237971 Msa0101600:three_prime_UTR 35.0%
ACTCTATCCCATATGCTAAA+GGG + chr1_3:8237953-8237972 Msa0101600:three_prime_UTR 35.0%
GTGATGCAAGTTCATATATC+TGG + chr1_3:8238108-8238127 Msa0101600:three_prime_UTR 35.0%
GATGCAAGTTCATATATCTG+GGG + chr1_3:8238110-8238129 Msa0101600:three_prime_UTR 35.0%
! GTGATGATGATACAGCTAAT+TGG - chr1_3:8238328-8238347 None:intergenic 35.0%
! CTCTCTGCTTCTCTTTGAAA+TGG + chr1_3:8234621-8234640 Msa0101600:exon 40.0%
!! CTGCTTCTCTTTGAAATGGT+AGG + chr1_3:8234625-8234644 Msa0101600:exon 40.0%
AATCTCTTCCTCCCAAGATT+TGG - chr1_3:8234656-8234675 None:intergenic 40.0%
!! GGTGGTGCTATGAAGAAATT+GGG - chr1_3:8234710-8234729 None:intergenic 40.0%
TATGAAGTACGGACACTTCT+CGG + chr1_3:8235300-8235319 Msa0101600:intron 40.0%
!! GACTTAGCTTTGTAACCTCA+AGG - chr1_3:8235519-8235538 None:intergenic 40.0%
!! GTGAAGAGCGTAACAGATTT+TGG - chr1_3:8235647-8235666 None:intergenic 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG - chr1_3:8235760-8235779 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG + chr1_3:8235757-8235776 Msa0101600:CDS 40.0%
AACTCCACTAGGACCTTTAA+GGG - chr1_3:8235773-8235792 None:intergenic 40.0%
ATATTCCACACAACTCCACT+AGG - chr1_3:8235784-8235803 None:intergenic 40.0%
CTGTTTACTTCACAAACGGT+TGG + chr1_3:8235827-8235846 Msa0101600:CDS 40.0%
CGCCATTGTACTTGAAGAAA+AGG - chr1_3:8235894-8235913 None:intergenic 40.0%
TGGACTTAGTTTCTGTGAGA+AGG + chr1_3:8235942-8235961 Msa0101600:CDS 40.0%
! CCTTTTACCAGTTAATTGGG+AGG - chr1_3:8236148-8236167 None:intergenic 40.0%
CCTCCCAATTAACTGGTAAA+AGG + chr1_3:8236145-8236164 Msa0101600:CDS 40.0%
! TAAGAGAGCACATGATTTGG+TGG + chr1_3:8236230-8236249 Msa0101600:CDS 40.0%
ACCTGAGTGTTCTTTGTTAC+AGG - chr1_3:8236256-8236275 None:intergenic 40.0%
! AGTCAGAGCAAAGCTTTGTA+TGG + chr1_3:8236400-8236419 Msa0101600:intron 40.0%
AAGGGAAAGACTTAGGACTT+TGG - chr1_3:8236487-8236506 None:intergenic 40.0%
!!! CCACGTCAGCGTTTTTTTTA+CGG - chr1_3:8236753-8236772 None:intergenic 40.0%
TTGGGGAAATGTAAGGGTAA+AGG - chr1_3:8236800-8236819 None:intergenic 40.0%
AATCAGGAGAAGATAACCGA+AGG - chr1_3:8237081-8237100 None:intergenic 40.0%
GCACACTGTTACAGAGTTAA+AGG + chr1_3:8237199-8237218 Msa0101600:intron 40.0%
TAAAATGGAGAGGAGCTTGT+TGG - chr1_3:8237396-8237415 None:intergenic 40.0%
AGGGAAAGGTTAAAATGGAG+AGG - chr1_3:8237406-8237425 None:intergenic 40.0%
! CAGACAAGTATCAGTTTGCT+AGG - chr1_3:8237474-8237493 None:intergenic 40.0%
ACGTGAAACATTGATATCGC+CGG - chr1_3:8237685-8237704 None:intergenic 40.0%
ATCTGCTTGACAAACTGATC+TGG + chr1_3:8237804-8237823 Msa0101600:intron 40.0%
TGTGCAGCAGAGAAATGATA+TGG - chr1_3:8237871-8237890 None:intergenic 40.0%
! GTAACTTCTGTTTTGCAGTC+AGG - chr1_3:8237898-8237917 None:intergenic 40.0%
CTGTTCTCCCTTTAGCATAT+GGG - chr1_3:8237963-8237982 None:intergenic 40.0%
ACTGTTCTCCCTTTAGCATA+TGG - chr1_3:8237964-8237983 None:intergenic 40.0%
TCTCCGTTTAGCATATGTGT+TGG - chr1_3:8237992-8238011 None:intergenic 40.0%
! CAAGTTCATATATCTGGGGT+TGG + chr1_3:8238114-8238133 Msa0101600:three_prime_UTR 40.0%
! TCATATATCTGGGGTTGGAA+AGG + chr1_3:8238119-8238138 Msa0101600:three_prime_UTR 40.0%
AAGGTCTTGACCAGCAAAAT+GGG + chr1_3:8238142-8238161 Msa0101600:three_prime_UTR 40.0%
TTGACCAGCAAAATGGGAAT+GGG + chr1_3:8238148-8238167 Msa0101600:three_prime_UTR 40.0%
CAAGAACGTTAGCAGGTAAA+CGG - chr1_3:8238201-8238220 None:intergenic 40.0%
TCACAAACAAGAACGTTAGC+AGG - chr1_3:8238208-8238227 None:intergenic 40.0%
CAGTTCACGAGGAAGATGAA+AGG - chr1_3:8234540-8234559 None:intergenic 45.0%
TCTTCCTCGTGAACTGTTGA+AGG + chr1_3:8234544-8234563 Msa0101600:five_prime_UTR 45.0%
CTTCCTCGTGAACTGTTGAA+GGG + chr1_3:8234545-8234564 Msa0101600:five_prime_UTR 45.0%
AAACCCTTCAACAGTTCACG+AGG - chr1_3:8234551-8234570 None:intergenic 45.0%
!! TGGTAGGAAGCACCAAATCT+TGG + chr1_3:8234641-8234660 Msa0101600:CDS 45.0%
!! GGTAGGAAGCACCAAATCTT+GGG + chr1_3:8234642-8234661 Msa0101600:CDS 45.0%
CTTGGGAGGAAGAGATTTAC+TGG + chr1_3:8234659-8234678 Msa0101600:CDS 45.0%
!! CGGTGGTGCTATGAAGAAAT+TGG - chr1_3:8234711-8234730 None:intergenic 45.0%
GTTCTGTTTGGGAGTTTGCA+AGG + chr1_3:8235139-8235158 Msa0101600:intron 45.0%
TGTTTGGGAGTTTGCAAGGA+GGG + chr1_3:8235143-8235162 Msa0101600:intron 45.0%
!! GAGAAGTGTCCGTACTTCAT+AGG - chr1_3:8235301-8235320 None:intergenic 45.0%
TGACTATGAAGCACGGACAT+CGG - chr1_3:8235456-8235475 None:intergenic 45.0%
! TACACTTGAGGTGCTAGCTA+AGG - chr1_3:8235541-8235560 None:intergenic 45.0%
CAACTCCACTAGGACCTTTA+AGG - chr1_3:8235774-8235793 None:intergenic 45.0%
GTCATGCTCAAACCGAACAA+GGG + chr1_3:8235992-8236011 Msa0101600:CDS 45.0%
TCATGCTCAAACCGAACAAG+GGG + chr1_3:8235993-8236012 Msa0101600:CDS 45.0%
! CACAGACTTGTTTGTGTCCT+TGG - chr1_3:8236028-8236047 None:intergenic 45.0%
CAAGGACACAAACAAGTCTG+TGG + chr1_3:8236026-8236045 Msa0101600:CDS 45.0%
!! TACTACTTTTGATGCGGGTG+TGG + chr1_3:8236059-8236078 Msa0101600:CDS 45.0%
!!! TAGCTGCTTTTGGTAATCCG+AGG - chr1_3:8236203-8236222 None:intergenic 45.0%
GCCTGTAACAAAGAACACTC+AGG + chr1_3:8236252-8236271 Msa0101600:intron 45.0%
TCTCGGCTTAATTACACCAC+AGG + chr1_3:8236560-8236579 Msa0101600:intron 45.0%
CGTCAAACTTAAAGGACCTG+TGG - chr1_3:8237327-8237346 None:intergenic 45.0%
CCGTAAAAAAAACGCTGACG+TGG + chr1_3:8236750-8236769 Msa0101600:intron 45.0%
GAGTCAGGGTTTGAGAATTG+GGG - chr1_3:8236817-8236836 None:intergenic 45.0%
GGAGTCAGGGTTTGAGAATT+GGG - chr1_3:8236818-8236837 None:intergenic 45.0%
TGGAGTCAGGGTTTGAGAAT+TGG - chr1_3:8236819-8236838 None:intergenic 45.0%
TTCTTCCCCTGCAATAATGC+TGG - chr1_3:8236897-8236916 None:intergenic 45.0%
CGTCAAACTTAAAGGACCTG+TGG + chr1_3:8237327-8237346 Msa0101600:intron 45.0%
! TGGCAGGTTAGTTAGAGAGA+TGG - chr1_3:8237376-8237395 None:intergenic 45.0%
CATCCATCGTGCATAGAAGT+GGG + chr1_3:8237589-8237608 Msa0101600:three_prime_UTR 45.0%
GCTTGACAAACTGATCTGGT+TGG + chr1_3:8237808-8237827 Msa0101600:intron 45.0%
GTTACGCTTCGCAATTCAAG+AGG + chr1_3:8237913-8237932 Msa0101600:three_prime_UTR 45.0%
GCAATTCAAGAGGCGAATGT+TGG + chr1_3:8237923-8237942 Msa0101600:three_prime_UTR 45.0%
! AGACCAGTTCACACCTTTTG+TGG + chr1_3:8238009-8238028 Msa0101600:three_prime_UTR 45.0%
! GACCAGTTCACACCTTTTGT+GGG + chr1_3:8238010-8238029 Msa0101600:three_prime_UTR 45.0%
! ACCAGTTCACACCTTTTGTG+GGG + chr1_3:8238011-8238030 Msa0101600:three_prime_UTR 45.0%
! ATATCTGGGGTTGGAAAGGA+AGG + chr1_3:8238123-8238142 Msa0101600:three_prime_UTR 45.0%
GAAGGTCTTGACCAGCAAAA+TGG + chr1_3:8238141-8238160 Msa0101600:three_prime_UTR 45.0%
CTTGACCAGCAAAATGGGAA+TGG + chr1_3:8238147-8238166 Msa0101600:three_prime_UTR 45.0%
! GTTTCCCATTCCCATTTTGC+TGG - chr1_3:8238155-8238174 None:intergenic 45.0%
!! AAAAAAAAAAAAAATGAAAA+AGG - chr1_3:8236292-8236311 None:intergenic 5.0%
!! AAATAATTTATAATTAATAC+TGG - chr1_3:8236517-8236536 None:intergenic 5.0%
!!! TTAAATATTTTAACAAAATA+TGG - chr1_3:8237660-8237679 None:intergenic 5.0%
GAGAGAGGGAAAGGGTTCAA+AGG - chr1_3:8234596-8234615 None:intergenic 50.0%
GAGAGAGAGAGAGAGGGAAA+GGG - chr1_3:8234604-8234623 None:intergenic 50.0%
AGAGAGAGAGAGAGAGGGAA+AGG - chr1_3:8234605-8234624 None:intergenic 50.0%
AGCAGAGAGAGAGAGAGAGA+GGG - chr1_3:8234610-8234629 None:intergenic 50.0%
AAGCAGAGAGAGAGAGAGAG+AGG - chr1_3:8234611-8234630 None:intergenic 50.0%
!! AGGAAGCACCAAATCTTGGG+AGG + chr1_3:8234645-8234664 Msa0101600:CDS 50.0%
CTGTTTGGGAGTTTGCAAGG+AGG + chr1_3:8235142-8235161 Msa0101600:intron 50.0%
GTTTGGGAGTTTGCAAGGAG+GGG + chr1_3:8235144-8235163 Msa0101600:intron 50.0%
GAGTTTGCAAGGAGGGGATA+AGG + chr1_3:8235150-8235169 Msa0101600:intron 50.0%
CAGATAGTGTTTGCGGAACC+AGG - chr1_3:8235219-8235238 None:intergenic 50.0%
GTGACCCTTAAAGGTCCTAG+TGG + chr1_3:8235766-8235785 Msa0101600:CDS 50.0%
AAGGTCCTAGTGGAGTTGTG+TGG + chr1_3:8235776-8235795 Msa0101600:CDS 50.0%
GGTCATGCTCAAACCGAACA+AGG + chr1_3:8235991-8236010 Msa0101600:CDS 50.0%
CATGCTCAAACCGAACAAGG+GGG + chr1_3:8235994-8236013 Msa0101600:CDS 50.0%
!! AACCGAACAAGGGGGTATCA+AGG + chr1_3:8236002-8236021 Msa0101600:CDS 50.0%
ATCAGCCATGCACTTCTCAG+GGG - chr1_3:8236094-8236113 None:intergenic 50.0%
CATCAGCCATGCACTTCTCA+GGG - chr1_3:8236095-8236114 None:intergenic 50.0%
AATACTCTGTCTCCAGCCCA+AGG + chr1_3:8236321-8236340 Msa0101600:intron 50.0%
!! CCTCGGATTAGTCAGTCCTT+GGG - chr1_3:8236340-8236359 None:intergenic 50.0%
CCAAGGACTGACTAATCCGA+GGG + chr1_3:8236338-8236357 Msa0101600:intron 50.0%
CAAGGACTGACTAATCCGAG+GGG + chr1_3:8236339-8236358 Msa0101600:intron 50.0%
ATGGACTTGCCCACCAAAGT+TGG + chr1_3:8236419-8236438 Msa0101600:intron 50.0%
ATCAAACCCGAGACCTTGAG+AGG + chr1_3:8236453-8236472 Msa0101600:intron 50.0%
! TTTGGAGTGTGCTCCTCTCA+AGG - chr1_3:8236469-8236488 None:intergenic 50.0%
TTATTGCAGGGGAAGAACGC+AGG + chr1_3:8236900-8236919 Msa0101600:intron 50.0%
GAGACCCAGAATGAAGGGAA+AGG - chr1_3:8237420-8237439 None:intergenic 50.0%
GCATCCATCGTGCATAGAAG+TGG + chr1_3:8237588-8237607 Msa0101600:three_prime_UTR 50.0%
CTTCCCACTTCTATGCACGA+TGG - chr1_3:8237595-8237614 None:intergenic 50.0%
CATCGTGCATAGAAGTGGGA+AGG + chr1_3:8237593-8237612 Msa0101600:three_prime_UTR 50.0%
! CCAGTTCACACCTTTTGTGG+GGG + chr1_3:8238012-8238031 Msa0101600:three_prime_UTR 50.0%
! TTCACACCTTTTGTGGGGGT+TGG + chr1_3:8238016-8238035 Msa0101600:three_prime_UTR 50.0%
! TCACACCTTTTGTGGGGGTT+GGG + chr1_3:8238017-8238036 Msa0101600:three_prime_UTR 50.0%
!! GTGTCGGTGTCTTTTGGCGT+CGG - chr1_3:8235361-8235380 None:intergenic 55.0%
GGCCTTGATACCCCCTTGTT+CGG - chr1_3:8236007-8236026 None:intergenic 55.0%
!! ACAAGGGGGTATCAAGGCCA+AGG + chr1_3:8236008-8236027 Msa0101600:CDS 55.0%
! TGCTTCCCCTGAGAAGTGCA+TGG + chr1_3:8236086-8236105 Msa0101600:CDS 55.0%
GCATCAGCCATGCACTTCTC+AGG - chr1_3:8236096-8236115 None:intergenic 55.0%
ATTGGGAGGGAGCTGCAACA+GGG - chr1_3:8236134-8236153 None:intergenic 55.0%
AATTGGGAGGGAGCTGCAAC+AGG - chr1_3:8236135-8236154 None:intergenic 55.0%
GCAGCTCCCTCCCAATTAAC+TGG + chr1_3:8236138-8236157 Msa0101600:CDS 55.0%
!! GGATTAGTCAGTCCTTGGGC+TGG - chr1_3:8236336-8236355 None:intergenic 55.0%
CCCAAGGACTGACTAATCCG+AGG + chr1_3:8236337-8236356 Msa0101600:intron 55.0%
!! CCCTCGGATTAGTCAGTCCT+TGG - chr1_3:8236341-8236360 None:intergenic 55.0%
TTAAATGGGACCCCCGCAAG+TGG - chr1_3:8236379-8236398 None:intergenic 55.0%
!! ATTCCCCTCGGTGCCAACTT+TGG - chr1_3:8236435-8236454 None:intergenic 55.0%
GTCTCGGGTTTGATTCCCCT+CGG - chr1_3:8236447-8236466 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+GGG - chr1_3:8236462-8236481 None:intergenic 55.0%
GTGTGCTCCTCTCAAGGTCT+CGG - chr1_3:8236463-8236482 None:intergenic 55.0%
!! ATGGAGAGGAGCTTGTTGGC+AGG - chr1_3:8237392-8237411 None:intergenic 55.0%
! CCCCCACAAAAGGTGTGAAC+TGG - chr1_3:8238015-8238034 None:intergenic 55.0%
TTGGGAGGGAGCTGCAACAG+GGG - chr1_3:8236133-8236152 None:intergenic 60.0%
CCAATCCCGCAGTCCACTTG+CGG + chr1_3:8236363-8236382 Msa0101600:intron 60.0%
CAATCCCGCAGTCCACTTGC+GGG + chr1_3:8236364-8236383 Msa0101600:intron 60.0%
AATCCCGCAGTCCACTTGCG+GGG + chr1_3:8236365-8236384 Msa0101600:intron 60.0%
!! CCCTCGGTGCCAACTTTGGT+GGG - chr1_3:8236431-8236450 None:intergenic 60.0%
! CCCACCAAAGTTGGCACCGA+GGG + chr1_3:8236428-8236447 Msa0101600:intron 60.0%
! CCACCAAAGTTGGCACCGAG+GGG + chr1_3:8236429-8236448 Msa0101600:intron 60.0%
! CACCTTTTGTGGGGGTTGGG+TGG + chr1_3:8238020-8238039 Msa0101600:three_prime_UTR 60.0%
GACTGCGGGATTGGACCCCT+CGG - chr1_3:8236357-8236376 None:intergenic 65.0%
!! CCGCAAGTGGACTGCGGGAT+TGG - chr1_3:8236366-8236385 None:intergenic 65.0%
ATCCCGCAGTCCACTTGCGG+GGG + chr1_3:8236366-8236385 Msa0101600:intron 65.0%
GCCCACCAAAGTTGGCACCG+AGG + chr1_3:8236427-8236446 Msa0101600:intron 65.0%
!! CCCCTCGGTGCCAACTTTGG+TGG - chr1_3:8236432-8236451 None:intergenic 65.0%
GGCCACCCAACCCCCACAAA+AGG - chr1_3:8238025-8238044 None:intergenic 65.0%
GGAGGGAGCTGCAACAGGGG+TGG - chr1_3:8236130-8236149 None:intergenic 70.0%
!! GACCCCCGCAAGTGGACTGC+GGG - chr1_3:8236371-8236390 None:intergenic 70.0%
!! GGACCCCCGCAAGTGGACTG+CGG - chr1_3:8236372-8236391 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8234509 8238404 8234509 ID=Msa0101600;Name=Msa0101600
chr1_3 mRNA 8234509 8238404 8234509 ID=Msa0101600-mRNA-1;Parent=Msa0101600;Name=Msa0101600-mRNA-1;_AED=0.33;_eAED=0.33;_QI=131|0.66|0.75|1|1|1|4|666|216
chr1_3 exon 8234509 8234747 8234509 ID=Msa0101600-mRNA-1:exon:3244;Parent=Msa0101600-mRNA-1
chr1_3 exon 8235715 8236255 8235715 ID=Msa0101600-mRNA-1:exon:3245;Parent=Msa0101600-mRNA-1
chr1_3 exon 8237586 8237710 8237586 ID=Msa0101600-mRNA-1:exon:3246;Parent=Msa0101600-mRNA-1
chr1_3 exon 8237862 8238404 8237862 ID=Msa0101600-mRNA-1:exon:3247;Parent=Msa0101600-mRNA-1
chr1_3 five_prime_UTR 8234509 8234639 8234509 ID=Msa0101600-mRNA-1:five_prime_utr;Parent=Msa0101600-mRNA-1
chr1_3 CDS 8234640 8234747 8234640 ID=Msa0101600-mRNA-1:cds;Parent=Msa0101600-mRNA-1
chr1_3 CDS 8235715 8236255 8235715 ID=Msa0101600-mRNA-1:cds;Parent=Msa0101600-mRNA-1
chr1_3 CDS 8237586 8237587 8237586 ID=Msa0101600-mRNA-1:cds;Parent=Msa0101600-mRNA-1
chr1_3 three_prime_UTR 8237588 8237710 8237588 ID=Msa0101600-mRNA-1:three_prime_utr;Parent=Msa0101600-mRNA-1
chr1_3 three_prime_UTR 8237862 8238404 8237862 ID=Msa0101600-mRNA-1:three_prime_utr;Parent=Msa0101600-mRNA-1
Gene Sequence

>Msa0101600

ATGGTAGGAAGCACCAAATCTTGGGAGGAAGAGATTTACTGGAACCATTTTCAGTTCATCCATTTCACCCAATTTCTTCATAGCACCACCGATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGAGCTGACAACTGAAGATGATACTGTTTACTTCACAAACGGTTGGCAACGATTTGTGAATGATCACTCTTTGAAAGAGAGTGATTTCCTTTTCTTCAAGTACAATGGCGAATCGTTGTTTGAAGTTTTAATCTTTGATGGACTTAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGTCATGCTCAAACCGAACAAGGGGGTATCAAGGCCAAGGACACAAACAAGTCTGTGGAAGAAATCAATACTACTTTTGATGCGGGTGTGGAGTCTGCTTCCCCTGAGAAGTGCATGGCTGATGCAGTCACTAAGACCACCCCTGTTGCAGCTCCCTCCCAATTAACTGGTAAAAGGATCAAGAAGCCTGTTAATAAATTTACGCTTGTCCTCGGATTACCAAAAGCAGCTACTTCTCATAAGAGAGCACATGATTTGGTGGCCTAG
Protein sequence

>Msa0101600

MVGSTKSWEEEIYWNHFQFIHFTQFLHSTTDFQQQLALPKTFSDNLKKKLPENVTLKGPSGVVWNIELTTEDDTVYFTNGWQRFVNDHSLKESDFLFFKYNGESLFEVLIFDGLSFCEKAASYFVGKCGHAQTEQGGIKAKDTNKSVEEINTTFDAGVESASPEKCMADAVTKTTPVAAPSQLTGKRIKKPVNKFTLVLGLPKAATSHKRAHDLVA*