Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867210 | XP_013466025.1 | 92.130 | 216 | 17 | 0 | 1 | 216 | 1 | 216 | 2.63e-142 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867210 | sp|Q8RYD1|REM16_ARATH | 50.658 | 152 | 67 | 4 | 8 | 157 | 11 | 156 | 3.71e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867210 | A0A072VDG5 | 92.130 | 216 | 17 | 0 | 1 | 216 | 1 | 216 | 1.26e-142 | 412 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0867210 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101600 | Msa0867210 | 0.869797 | 2.364557e-66 | -8.615850e-47 |
| Msa0145450 | Msa0867210 | 0.870164 | 1.794590e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867210 | MtrunA17_Chr1g0154191 | 92.130 | 216 | 17 | 0 | 1 | 216 | 1 | 216 | 2.42e-146 | 412 |
| Msa0867210 | MtrunA17_Chr1g0154171 | 73.853 | 218 | 44 | 4 | 5 | 216 | 6 | 216 | 2.10e-105 | 308 |
| Msa0867210 | MtrunA17_Chr1g0154241 | 63.052 | 249 | 49 | 5 | 1 | 211 | 1 | 244 | 7.57e-98 | 285 |
| Msa0867210 | MtrunA17_Chr1g0154211 | 59.919 | 247 | 66 | 3 | 2 | 216 | 3 | 248 | 1.81e-93 | 279 |
| Msa0867210 | MtrunA17_Chr1g0154251 | 60.776 | 232 | 48 | 5 | 3 | 192 | 8 | 238 | 1.98e-89 | 272 |
| Msa0867210 | MtrunA17_Chr1g0154131 | 71.875 | 192 | 29 | 4 | 6 | 196 | 168 | 335 | 2.21e-88 | 268 |
| Msa0867210 | MtrunA17_Chr1g0154131 | 69.643 | 168 | 50 | 1 | 4 | 171 | 8 | 174 | 1.06e-76 | 238 |
| Msa0867210 | MtrunA17_Chr1g0154111 | 74.432 | 176 | 41 | 3 | 4 | 178 | 8 | 180 | 1.52e-86 | 267 |
| Msa0867210 | MtrunA17_Chr1g0154111 | 55.500 | 200 | 67 | 6 | 37 | 216 | 368 | 565 | 2.05e-53 | 180 |
| Msa0867210 | MtrunA17_Chr1g0154101 | 77.914 | 163 | 36 | 0 | 3 | 165 | 6 | 168 | 4.10e-85 | 268 |
| Msa0867210 | MtrunA17_Chr1g0154101 | 51.890 | 291 | 58 | 4 | 6 | 216 | 168 | 456 | 6.63e-84 | 265 |
| Msa0867210 | MtrunA17_Chr1g0154161 | 81.507 | 146 | 22 | 1 | 5 | 150 | 13 | 153 | 2.21e-83 | 250 |
| Msa0867210 | MtrunA17_Chr1g0154071 | 66.082 | 171 | 53 | 2 | 10 | 180 | 145 | 310 | 2.38e-73 | 230 |
| Msa0867210 | MtrunA17_Chr1g0154071 | 77.941 | 136 | 29 | 1 | 2 | 137 | 8 | 142 | 1.32e-67 | 215 |
| Msa0867210 | MtrunA17_Chr1g0154151 | 61.905 | 189 | 48 | 5 | 37 | 216 | 19 | 192 | 5.89e-68 | 211 |
| Msa0867210 | MtrunA17_Chr3g0131891 | 38.144 | 97 | 55 | 1 | 16 | 112 | 18 | 109 | 7.85e-15 | 72.0 |
| Msa0867210 | MtrunA17_Chr1g0154041 | 34.951 | 103 | 65 | 2 | 21 | 123 | 15 | 115 | 1.40e-14 | 72.0 |
| Msa0867210 | MtrunA17_Chr7g0233571 | 34.694 | 98 | 64 | 0 | 15 | 112 | 3 | 100 | 1.80e-14 | 69.7 |
| Msa0867210 | MtrunA17_Chr7g0233561 | 33.696 | 92 | 61 | 0 | 20 | 111 | 16 | 107 | 2.56e-14 | 70.5 |
| Msa0867210 | MtrunA17_Chr7g0233531 | 29.771 | 131 | 70 | 1 | 38 | 168 | 2 | 110 | 3.69e-13 | 67.0 |
| Msa0867210 | MtrunA17_Chr3g0077461 | 32.609 | 92 | 62 | 0 | 21 | 112 | 236 | 327 | 6.54e-12 | 63.9 |
| Msa0867210 | MtrunA17_Chr3g0077411 | 32.990 | 97 | 64 | 1 | 20 | 115 | 260 | 356 | 1.74e-11 | 62.8 |
| Msa0867210 | MtrunA17_Chr5g0429931 | 38.462 | 78 | 48 | 0 | 38 | 115 | 11 | 88 | 3.41e-11 | 60.8 |
| Msa0867210 | MtrunA17_Chr5g0419201 | 29.825 | 114 | 77 | 1 | 33 | 146 | 27 | 137 | 4.66e-11 | 59.7 |
| Msa0867210 | MtrunA17_Chr3g0077451 | 37.662 | 77 | 48 | 0 | 36 | 112 | 10 | 86 | 7.74e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0867210 | AT4G33280.2 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 3.53e-45 | 152 |
| Msa0867210 | AT4G33280.1 | 50.658 | 152 | 67 | 4 | 8 | 157 | 11 | 156 | 3.77e-44 | 150 |
| Msa0867210 | AT4G33280.3 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 4.29e-44 | 152 |
| Msa0867210 | AT4G34400.2 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 4.19e-19 | 85.1 |
| Msa0867210 | AT4G34400.1 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 4.19e-19 | 85.1 |
| Msa0867210 | AT5G60130.5 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 9.83e-15 | 71.2 |
| Msa0867210 | AT5G60130.3 | 41.573 | 89 | 47 | 2 | 36 | 119 | 1 | 89 | 1.15e-14 | 71.6 |
| Msa0867210 | AT5G66980.1 | 45.122 | 82 | 41 | 1 | 34 | 111 | 21 | 102 | 1.46e-14 | 71.6 |
| Msa0867210 | AT5G60130.2 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.49e-14 | 71.2 |
| Msa0867210 | AT5G60130.4 | 41.573 | 89 | 47 | 2 | 36 | 119 | 24 | 112 | 1.77e-14 | 71.2 |
| Msa0867210 | AT5G60130.1 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.79e-14 | 71.2 |
| Msa0867210 | AT3G06220.1 | 31.633 | 98 | 64 | 2 | 22 | 119 | 11 | 105 | 1.87e-14 | 68.9 |
| Msa0867210 | AT3G18990.2 | 35.165 | 91 | 59 | 0 | 22 | 112 | 6 | 96 | 1.27e-13 | 69.3 |
| Msa0867210 | AT3G18990.1 | 35.165 | 91 | 59 | 0 | 22 | 112 | 6 | 96 | 1.43e-13 | 68.9 |
| Msa0867210 | AT3G06160.5 | 26.012 | 173 | 119 | 4 | 22 | 188 | 11 | 180 | 1.92e-13 | 68.6 |
| Msa0867210 | AT3G06160.4 | 26.012 | 173 | 119 | 4 | 22 | 188 | 11 | 180 | 1.92e-13 | 68.6 |
| Msa0867210 | AT3G06160.3 | 26.012 | 173 | 119 | 4 | 22 | 188 | 11 | 180 | 1.92e-13 | 68.6 |
| Msa0867210 | AT3G06160.1 | 26.012 | 173 | 119 | 4 | 22 | 188 | 26 | 195 | 2.03e-13 | 68.6 |
| Msa0867210 | AT3G06160.2 | 26.012 | 173 | 119 | 4 | 22 | 188 | 70 | 239 | 3.30e-13 | 68.2 |
| Msa0867210 | AT1G49475.1 | 36.264 | 91 | 57 | 1 | 22 | 112 | 34 | 123 | 2.43e-12 | 63.5 |
| Msa0867210 | AT3G53310.1 | 36.709 | 79 | 50 | 0 | 34 | 112 | 22 | 100 | 6.83e-12 | 63.5 |
| Msa0867210 | AT3G18960.2 | 36.842 | 95 | 48 | 2 | 35 | 118 | 32 | 125 | 1.46e-11 | 61.6 |
| Msa0867210 | AT3G18960.1 | 36.842 | 95 | 48 | 2 | 35 | 118 | 32 | 125 | 2.25e-11 | 61.2 |
| Msa0867210 | AT4G01580.1 | 35.789 | 95 | 49 | 2 | 35 | 118 | 32 | 125 | 9.96e-11 | 59.3 |
Find 88 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGATAATAACATTAAATT+TGG | 0.154377 | 5_4:-69921657 | Msa0867210:three_prime_UTR |
| CACAGACTTGTTTGTGTCCT+TGG | 0.171497 | 5_4:+69923683 | None:intergenic |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 5_4:+69923937 | None:intergenic |
| GTGATGCAAGTTCATATATC+TGG | 0.223627 | 5_4:-69921600 | Msa0867210:three_prime_UTR |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 5_4:-69923951 | Msa0867210:CDS |
| CGGTGGTGCTATGAAGAAAT+TGG | 0.266641 | 5_4:+69925000 | None:intergenic |
| GTGATGATGATACAGCTAAT+TGG | 0.290978 | 5_4:+69921383 | None:intergenic |
| CCTCCCAATTAACTGGTAAA+AGG | 0.296250 | 5_4:-69923563 | Msa0867210:CDS |
| CTTGGGAGGAAGAGATTTAC+TGG | 0.300092 | 5_4:-69925049 | Msa0867210:CDS |
| GAAGGTCTTGACCAGCAAAA+TGG | 0.302980 | 5_4:-69921567 | Msa0867210:three_prime_UTR |
| TTATGAGAAGTAGCTGCTTT+TGG | 0.305223 | 5_4:+69923498 | None:intergenic |
| ACAAGCGTAAATTTATTAAC+AGG | 0.306921 | 5_4:+69923531 | None:intergenic |
| TGAAATGGATGAACTGAAAA+TGG | 0.343707 | 5_4:+69925024 | None:intergenic |
| TATCAATGTTTCACGTACTA+TGG | 0.347323 | 5_4:-69922019 | Msa0867210:intron |
| AATCTCTTCCTCCCAAGATT+TGG | 0.351389 | 5_4:+69925055 | None:intergenic |
| AATTGGGAGGGAGCTGCAAC+AGG | 0.351758 | 5_4:+69923576 | None:intergenic |
| CTCTCTGCTTCTCTTTGAAA+TGG | 0.357648 | 5_4:-69925087 | Msa0867210:exon |
| ACTGTTCTCCCTTTAGCATA+TGG | 0.359682 | 5_4:+69921747 | None:intergenic |
| TACAAGTTGTTGTTGAAAAT+CGG | 0.364741 | 5_4:+69924980 | None:intergenic |
| CGCCATTGTACTTGAAGAAA+AGG | 0.367579 | 5_4:+69923817 | None:intergenic |
| TCTTCCTCGTGAACTGTTGA+AGG | 0.369672 | 5_4:-69925164 | Msa0867210:five_prime_UTR |
| GCATCAGCCATGCACTTCTC+AGG | 0.387871 | 5_4:+69923615 | None:intergenic |
| TGTGCAGCAGAGAAATGATA+TGG | 0.401325 | 5_4:+69921840 | None:intergenic |
| TCATAAGAGAGCACATGATT+TGG | 0.411083 | 5_4:-69923481 | Msa0867210:CDS |
| GCAGCTCCCTCCCAATTAAC+TGG | 0.415607 | 5_4:-69923570 | Msa0867210:CDS |
| TTTGTTAAAATATTTAAAAC+CGG | 0.417027 | 5_4:-69922045 | Msa0867210:three_prime_UTR |
| CTGTTCTCCCTTTAGCATAT+GGG | 0.419113 | 5_4:+69921748 | None:intergenic |
| AAGGTCTTGACCAGCAAAAT+GGG | 0.444958 | 5_4:-69921566 | Msa0867210:three_prime_UTR |
| AACTCTATCCCATATGCTAA+AGG | 0.447966 | 5_4:-69921756 | Msa0867210:three_prime_UTR |
| TGGTAGGAAGCACCAAATCT+TGG | 0.448666 | 5_4:-69925067 | Msa0867210:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.454776 | 5_4:+69922059 | None:intergenic |
| TATGAAGAAATTGGGTGAAA+TGG | 0.456523 | 5_4:+69925009 | None:intergenic |
| CAAGAACGTTAGCAGGTAAA+CGG | 0.456745 | 5_4:+69921510 | None:intergenic |
| GAAAAGAGGAGGTAAATGAT+TGG | 0.467251 | 5_4:+69922073 | None:intergenic |
| TGATGATGATACAGCTAATT+GGG | 0.467582 | 5_4:+69921384 | None:intergenic |
| TGATGCAAGTTCATATATCT+GGG | 0.470555 | 5_4:-69921599 | Msa0867210:three_prime_UTR |
| GGTAGGAAGCACCAAATCTT+GGG | 0.471144 | 5_4:-69925066 | Msa0867210:CDS |
| CAAAGGTACAAAGCTAAAGT+AGG | 0.471868 | 5_4:+69925132 | None:intergenic |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 5_4:+69923938 | None:intergenic |
| AAACCAACACATATGCTAAA+CGG | 0.480555 | 5_4:-69921722 | Msa0867210:three_prime_UTR |
| GATACTGTTTACTTCACAAA+CGG | 0.486582 | 5_4:-69923885 | Msa0867210:CDS |
| ACTCTATCCCATATGCTAAA+GGG | 0.488518 | 5_4:-69921755 | Msa0867210:three_prime_UTR |
| AATAAATTTACGCTTGTCCT+CGG | 0.500280 | 5_4:-69923525 | Msa0867210:CDS |
| TTGGGAGGGAGCTGCAACAG+GGG | 0.501107 | 5_4:+69923578 | None:intergenic |
| CTTGACCAGCAAAATGGGAA+TGG | 0.504154 | 5_4:-69921561 | Msa0867210:three_prime_UTR |
| CTTCCTCGTGAACTGTTGAA+GGG | 0.506288 | 5_4:-69925163 | Msa0867210:five_prime_UTR |
| GCAATTCAAGAGGCGAATGT+TGG | 0.508378 | 5_4:-69921785 | Msa0867210:three_prime_UTR |
| TTGACCAGCAAAATGGGAAT+GGG | 0.509143 | 5_4:-69921560 | Msa0867210:three_prime_UTR |
| AAAAGAGGAGGTAAATGATT+GGG | 0.509472 | 5_4:+69922074 | None:intergenic |
| CTGCTTCTCTTTGAAATGGT+AGG | 0.526272 | 5_4:-69925083 | Msa0867210:exon |
| GGTCATGCTCAAACCGAACA+AGG | 0.526750 | 5_4:-69923717 | Msa0867210:CDS |
| TAAGAGAGCACATGATTTGG+TGG | 0.528009 | 5_4:-69923478 | Msa0867210:CDS |
| CAAGTTCATATATCTGGGGT+TGG | 0.532218 | 5_4:-69921594 | Msa0867210:three_prime_UTR |
| CATCAGCCATGCACTTCTCA+GGG | 0.533895 | 5_4:+69923616 | None:intergenic |
| AATGTTATTATCACGAACAA+AGG | 0.534520 | 5_4:+69921665 | None:intergenic |
| ATATCTGGGGTTGGAAAGGA+AGG | 0.539398 | 5_4:-69921585 | Msa0867210:three_prime_UTR |
| CTGTTTACTTCACAAACGGT+TGG | 0.539585 | 5_4:-69923881 | Msa0867210:CDS |
| TCTCCGTTTAGCATATGTGT+TGG | 0.547322 | 5_4:+69921719 | None:intergenic |
| TCATATATCTGGGGTTGGAA+AGG | 0.547674 | 5_4:-69921589 | Msa0867210:three_prime_UTR |
| GAGAGAGGGAAAGGGTTCAA+AGG | 0.552787 | 5_4:+69925115 | None:intergenic |
| TCACAAACAAGAACGTTAGC+AGG | 0.554809 | 5_4:+69921503 | None:intergenic |
| GGAGGGAGCTGCAACAGGGG+TGG | 0.557934 | 5_4:+69923581 | None:intergenic |
| TGGACTTAGTTTCTGTGAGA+AGG | 0.559379 | 5_4:-69923766 | Msa0867210:CDS |
| GGTGGTGCTATGAAGAAATT+GGG | 0.559533 | 5_4:+69925001 | None:intergenic |
| AAAGGTACAAAGCTAAAGTA+GGG | 0.563924 | 5_4:+69925133 | None:intergenic |
| GCATCCATCGTGCATAGAAG+TGG | 0.570003 | 5_4:-69922120 | Msa0867210:three_prime_UTR |
| GTTACGCTTCGCAATTCAAG+AGG | 0.574465 | 5_4:-69921795 | Msa0867210:three_prime_UTR |
| TGCTTCCCCTGAGAAGTGCA+TGG | 0.578286 | 5_4:-69923622 | Msa0867210:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578782 | 5_4:+69923927 | None:intergenic |
| AACAAAATATGGAAAAGAGG+AGG | 0.585641 | 5_4:+69922062 | None:intergenic |
| GTCATGCTCAAACCGAACAA+GGG | 0.590087 | 5_4:-69923716 | Msa0867210:CDS |
| ATTGGGAGGGAGCTGCAACA+GGG | 0.596413 | 5_4:+69923577 | None:intergenic |
| ACGTGAAACATTGATATCGC+CGG | 0.611796 | 5_4:+69922026 | None:intergenic |
| CTTCCCACTTCTATGCACGA+TGG | 0.624258 | 5_4:+69922116 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 5_4:-69923932 | Msa0867210:CDS |
| CATCCATCGTGCATAGAAGT+GGG | 0.629073 | 5_4:-69922119 | Msa0867210:three_prime_UTR |
| CATCGTGCATAGAAGTGGGA+AGG | 0.630861 | 5_4:-69922115 | Msa0867210:three_prime_UTR |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 5_4:-69923942 | Msa0867210:CDS |
| TCATGCTCAAACCGAACAAG+GGG | 0.635196 | 5_4:-69923715 | Msa0867210:CDS |
| CAGTTCACGAGGAAGATGAA+AGG | 0.657063 | 5_4:+69925171 | None:intergenic |
| AAGTTGTTGTTGAAAATCGG+TGG | 0.662291 | 5_4:+69924983 | None:intergenic |
| AGGAAGCACCAAATCTTGGG+AGG | 0.669254 | 5_4:-69925063 | Msa0867210:CDS |
| AAACCCTTCAACAGTTCACG+AGG | 0.670720 | 5_4:+69925160 | None:intergenic |
| CGACATGAACTGAAATGCAG+CGG | 0.675891 | 5_4:+69921323 | None:intergenic |
| CAAGGACACAAACAAGTCTG+TGG | 0.678532 | 5_4:-69923682 | Msa0867210:CDS |
| ATCAGCCATGCACTTCTCAG+GGG | 0.683978 | 5_4:+69923617 | None:intergenic |
| CATGCTCAAACCGAACAAGG+GGG | 0.761893 | 5_4:-69923714 | Msa0867210:CDS |
| GATGCAAGTTCATATATCTG+GGG | 0.765392 | 5_4:-69921598 | Msa0867210:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAACAAAATTTAAA+AGG | + | chr5_4:69921713-69921732 | None:intergenic | 10.0% |
| !! | ATAATTAAGTAAATTGTTTA+AGG | - | chr5_4:69921934-69921953 | Msa0867210:intron | 10.0% |
| !!! | TTTGTTAAAATATTTAAAAC+CGG | - | chr5_4:69924480-69924499 | Msa0867210:intron | 10.0% |
| !!! | TTCATTTTTAATTTTCAACA+TGG | + | chr5_4:69921599-69921618 | None:intergenic | 15.0% |
| !! | GTATAAAATATAAAAAACCA+TGG | + | chr5_4:69921816-69921835 | None:intergenic | 15.0% |
| !! | AATAAAATTGTTAATTAACG+TGG | - | chr5_4:69922083-69922102 | Msa0867210:three_prime_UTR | 15.0% |
| !! | AAAAAAAAAAATGAAAAAGG+AGG | + | chr5_4:69923106-69923125 | None:intergenic | 15.0% |
| !! | TTATAATTAATACTGGTAAA+AGG | + | chr5_4:69923327-69923346 | None:intergenic | 15.0% |
| !!! | TATAACTAACATTTATTTCT+CGG | - | chr5_4:69923360-69923379 | Msa0867210:intron | 15.0% |
| !!! | AATCATCAGTTTTAAATAAA+AGG | + | chr5_4:69924362-69924381 | None:intergenic | 15.0% |
| !! | CAAAAATTACTTAAAGATAA+GGG | + | chr5_4:69924592-69924611 | None:intergenic | 15.0% |
| !! | ACAAAAATTACTTAAAGATA+AGG | + | chr5_4:69924593-69924612 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTCAACATGGT+AGG | + | chr5_4:69921595-69921614 | None:intergenic | 20.0% |
| !! | ACAAACAAAATTTAAAAGGT+GGG | + | chr5_4:69921709-69921728 | None:intergenic | 20.0% |
| !! | AACAAACAAAATTTAAAAGG+TGG | + | chr5_4:69921710-69921729 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | - | chr5_4:69922219-69922238 | Msa0867210:intron | 20.0% |
| !! | AATAATTATGTTTAGCTGTT+AGG | - | chr5_4:69922423-69922442 | Msa0867210:intron | 20.0% |
| !!! | GAAATTTGTATTTTAATTGC+AGG | - | chr5_4:69922510-69922529 | Msa0867210:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr5_4:69922541-69922560 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTTTAATCTTTGA+TGG | - | chr5_4:69922739-69922758 | Msa0867210:intron | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr5_4:69924469-69924488 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATAATT+GGG | + | chr5_4:69924566-69924585 | None:intergenic | 20.0% |
| !! | CGTGATAATAACATTAAATT+TGG | - | chr5_4:69924868-69924887 | Msa0867210:intron | 20.0% |
| !! | TACAAGTTGTTGTTGAAAAT+CGG | + | chr5_4:69921548-69921567 | None:intergenic | 25.0% |
| !!! | AAAGTTTTCATTTTTTGCCA+TGG | - | chr5_4:69921796-69921815 | Msa0867210:three_prime_UTR | 25.0% |
| !! | AAATTGTTTAAGGTTCTGTT+TGG | - | chr5_4:69921944-69921963 | Msa0867210:intron | 25.0% |
| !! | AATTGTTTAAGGTTCTGTTT+GGG | - | chr5_4:69921945-69921964 | Msa0867210:intron | 25.0% |
| ! | TACAGTGTAATTATATGTGT+CGG | + | chr5_4:69922194-69922213 | None:intergenic | 25.0% |
| ! | TGAGATTAAAACATACATTG+AGG | + | chr5_4:69922486-69922505 | None:intergenic | 25.0% |
| !!! | ATGTATGTTTTAATCTCAGA+TGG | - | chr5_4:69922488-69922507 | Msa0867210:intron | 25.0% |
| !!! | TCTTATTTTGTTGGAAAATG+TGG | - | chr5_4:69922787-69922806 | Msa0867210:intron | 25.0% |
| !!! | AATCAATACTACTTTTGATG+CGG | - | chr5_4:69922870-69922889 | Msa0867210:intron | 25.0% |
| ! | ACAAGCGTAAATTTATTAAC+AGG | + | chr5_4:69922997-69923016 | None:intergenic | 25.0% |
| ! | ATTAATACTGGTAAAAGGAA+GGG | + | chr5_4:69923322-69923341 | None:intergenic | 25.0% |
| ! | AATTAATACTGGTAAAAGGA+AGG | + | chr5_4:69923323-69923342 | None:intergenic | 25.0% |
| ! | CTGTTACTAAACAAACTTAA+AGG | + | chr5_4:69923435-69923454 | None:intergenic | 25.0% |
| !! | AAGTTTGTTTAGTAACAGAT+AGG | - | chr5_4:69923437-69923456 | Msa0867210:intron | 25.0% |
| ! | CTGTTACAAAACAAACTTAA+AGG | + | chr5_4:69924045-69924064 | None:intergenic | 25.0% |
| !!! | AAGTTTGTTTTGTAACAGAT+AGG | - | chr5_4:69923497-69923516 | Msa0867210:CDS | 25.0% |
| ! | TATGAATAAAAATGGAGTCA+GGG | + | chr5_4:69923648-69923667 | None:intergenic | 25.0% |
| !! | AGCTTTGGTATGAATAAAAA+TGG | + | chr5_4:69923656-69923675 | None:intergenic | 25.0% |
| ! | GAGTTGAGTATATTTATCAT+CGG | - | chr5_4:69923767-69923786 | Msa0867210:CDS | 25.0% |
| ! | CTGATTCTTCAAAAAAAACT+GGG | - | chr5_4:69923912-69923931 | Msa0867210:CDS | 25.0% |
| ! | CTGTTACAAAACAAACTTAA+AGG | - | chr5_4:69924045-69924064 | Msa0867210:intron | 25.0% |
| ! | GTTTGATGTTTGTAACATAT+AGG | + | chr5_4:69924072-69924091 | None:intergenic | 25.0% |
| ! | GTTACAAACATCAAACTTAA+AGG | - | chr5_4:69924076-69924095 | Msa0867210:intron | 25.0% |
| !!! | AAGTTTGTTTTGTAACAGAT+AGG | + | chr5_4:69923497-69923516 | None:intergenic | 25.0% |
| ! | CTGTTACAAAACAAACTTAA+AGG | - | chr5_4:69924045-69924064 | Msa0867210:intron | 25.0% |
| !! | TAAGCTCTGACATAAATATA+AGG | + | chr5_4:69924338-69924357 | None:intergenic | 25.0% |
| ! | GTAAATGAAGAATCACAAAA+GGG | + | chr5_4:69924541-69924560 | None:intergenic | 25.0% |
| ! | GAGAGATAAAACAACATAAT+TGG | + | chr5_4:69924567-69924586 | None:intergenic | 25.0% |
| ! | AATGTTATTATCACGAACAA+AGG | + | chr5_4:69924863-69924882 | None:intergenic | 25.0% |
| !! | ACAGAAATCAATTTTCAATG+AGG | - | chr5_4:69925046-69925065 | Msa0867210:CDS | 25.0% |
| ! | AAAGGTACAAAGCTAAAGTA+GGG | + | chr5_4:69921395-69921414 | None:intergenic | 30.0% |
| TGAAATGGATGAACTGAAAA+TGG | + | chr5_4:69921504-69921523 | None:intergenic | 30.0% | |
| TATGAAGAAATTGGGTGAAA+TGG | + | chr5_4:69921519-69921538 | None:intergenic | 30.0% | |
| CTAATATGAACACTTCAGAA+GGG | + | chr5_4:69921623-69921642 | None:intergenic | 30.0% | |
| ! | GAAGTGTTCATATTAGGATT+TGG | - | chr5_4:69921627-69921646 | Msa0867210:three_prime_UTR | 30.0% |
| ATTTACACAGATAGTGTTTG+CGG | + | chr5_4:69922043-69922062 | None:intergenic | 30.0% | |
| CATTAATGACCTATGAAGTA+CGG | - | chr5_4:69922106-69922125 | Msa0867210:three_prime_UTR | 30.0% | |
| ACTATATTACAACTGTGTGA+GGG | - | chr5_4:69922295-69922314 | Msa0867210:intron | 30.0% | |
| AATTTGAACTTTGTACCTTG+AGG | - | chr5_4:69922318-69922337 | Msa0867210:intron | 30.0% | |
| ACATGATTTACATACACTTG+AGG | + | chr5_4:69922370-69922389 | None:intergenic | 30.0% | |
| GATACTGTTTACTTCACAAA+CGG | - | chr5_4:69922640-69922659 | Msa0867210:intron | 30.0% | |
| ! | TTCCTTTTCTTCAAGTACAA+TGG | - | chr5_4:69922706-69922725 | Msa0867210:intron | 30.0% |
| !! | ATCAATACTACTTTTGATGC+GGG | - | chr5_4:69922871-69922890 | Msa0867210:intron | 30.0% |
| ! | GATCCTTTTACCAGTTAATT+GGG | + | chr5_4:69922968-69922987 | None:intergenic | 30.0% |
| ! | TGATCCTTTTACCAGTTAAT+TGG | + | chr5_4:69922969-69922988 | None:intergenic | 30.0% |
| AATAAATTTACGCTTGTCCT+CGG | - | chr5_4:69923000-69923019 | Msa0867210:intron | 30.0% | |
| ! | CTTTGCTCTGACTTTTAAAT+GGG | + | chr5_4:69923210-69923229 | None:intergenic | 30.0% |
| GTTACAAACGTCAAACTTAA+AGG | + | chr5_4:69924136-69924155 | None:intergenic | 30.0% | |
| GTTTGACGTTTGTAACATAT+AGG | - | chr5_4:69923408-69923427 | Msa0867210:intron | 30.0% | |
| GTTACAAACGTCAAACTTAA+AGG | + | chr5_4:69924136-69924155 | None:intergenic | 30.0% | |
| GTATGAATAAAAATGGAGTC+AGG | + | chr5_4:69923649-69923668 | None:intergenic | 30.0% | |
| AATAATGCTGGTATTACACT+TGG | + | chr5_4:69923702-69923721 | None:intergenic | 30.0% | |
| !!! | CCAGTTTTTTTTGAAGAATC+AGG | + | chr5_4:69923914-69923933 | None:intergenic | 30.0% |
| CCTGATTCTTCAAAAAAAAC+TGG | - | chr5_4:69923911-69923930 | Msa0867210:CDS | 30.0% | |
| AAAAAAACTGGGTGTAGTAA+AGG | - | chr5_4:69923923-69923942 | Msa0867210:CDS | 30.0% | |
| GTTTGACGTTTGTAACATAT+AGG | + | chr5_4:69923408-69923427 | None:intergenic | 30.0% | |
| GTTACAAACGTCAAACTTAA+AGG | - | chr5_4:69924136-69924155 | Msa0867210:intron | 30.0% | |
| AATGAAGGGAAAGGTTAAAA+TGG | + | chr5_4:69924228-69924247 | None:intergenic | 30.0% | |
| AAAAGAGGAGGTAAATGATT+GGG | + | chr5_4:69924454-69924473 | None:intergenic | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | + | chr5_4:69924466-69924485 | None:intergenic | 30.0% | |
| TATCAATGTTTCACGTACTA+TGG | - | chr5_4:69924506-69924525 | Msa0867210:intron | 30.0% | |
| GGTAAATGAAGAATCACAAA+AGG | + | chr5_4:69924542-69924561 | None:intergenic | 30.0% | |
| GATAAAACAACATAATTGGG+AGG | + | chr5_4:69924563-69924582 | None:intergenic | 30.0% | |
| AAACCAACACATATGCTAAA+CGG | - | chr5_4:69924803-69924822 | Msa0867210:intron | 30.0% | |
| TGATGCAAGTTCATATATCT+GGG | - | chr5_4:69924926-69924945 | Msa0867210:intron | 30.0% | |
| ! | TGATGATGATACAGCTAATT+GGG | + | chr5_4:69925144-69925163 | None:intergenic | 30.0% |
| ! | CAAAGGTACAAAGCTAAAGT+AGG | + | chr5_4:69921396-69921415 | None:intergenic | 35.0% |
| ! | AAGTTGTTGTTGAAAATCGG+TGG | + | chr5_4:69921545-69921564 | None:intergenic | 35.0% |
| CCTAATATGAACACTTCAGA+AGG | + | chr5_4:69921624-69921643 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTGTTCATATT+AGG | - | chr5_4:69921621-69921640 | Msa0867210:three_prime_UTR | 35.0% |
| ! | GCTGTTCATTATTCTTTTCC+TGG | - | chr5_4:69922015-69922034 | Msa0867210:intron | 35.0% |
| !! | TTATATGTGTCGGTGTCTTT+TGG | + | chr5_4:69922184-69922203 | None:intergenic | 35.0% |
| TCTCAAATAATTAGCGGTGT+TGG | - | chr5_4:69922225-69922244 | Msa0867210:intron | 35.0% | |
| ATAGTCATGACTATGAAGCA+CGG | + | chr5_4:69922280-69922299 | None:intergenic | 35.0% | |
| GACTATATTACAACTGTGTG+AGG | - | chr5_4:69922294-69922313 | Msa0867210:intron | 35.0% | |
| !!! | AAGGCAGCTTCTTATTTTGT+TGG | - | chr5_4:69922778-69922797 | Msa0867210:intron | 35.0% |
| ! | CTTTTACCAGTTAATTGGGA+GGG | + | chr5_4:69922964-69922983 | None:intergenic | 35.0% |
| !! | TTATGAGAAGTAGCTGCTTT+TGG | + | chr5_4:69923030-69923049 | None:intergenic | 35.0% |
| ! | TCATAAGAGAGCACATGATT+TGG | - | chr5_4:69923044-69923063 | Msa0867210:intron | 35.0% |
| ! | GCTTTGCTCTGACTTTTAAA+TGG | + | chr5_4:69923211-69923230 | None:intergenic | 35.0% |
| TAAAAGGAAGGGAAAGACTT+AGG | + | chr5_4:69923311-69923330 | None:intergenic | 35.0% | |
| GTTTGACGTTTGTAACATAC+AGG | - | chr5_4:69923468-69923487 | Msa0867210:intron | 35.0% | |
| GCACACTGTTACAAAGTTAA+AGG | + | chr5_4:69923524-69923543 | None:intergenic | 35.0% | |
| TGAGAATTGGGGAAATGTAA+GGG | + | chr5_4:69923623-69923642 | None:intergenic | 35.0% | |
| TTGAGAATTGGGGAAATGTA+AGG | + | chr5_4:69923624-69923643 | None:intergenic | 35.0% | |
| GATTTGACGAATTCAAGCTT+TGG | + | chr5_4:69923671-69923690 | None:intergenic | 35.0% | |
| GCTTGAATTCGTCAAATCAA+TGG | - | chr5_4:69923673-69923692 | Msa0867210:CDS | 35.0% | |
| TGTAATACCAGCATTATTGC+AGG | - | chr5_4:69923704-69923723 | Msa0867210:CDS | 35.0% | |
| GTAATACCAGCATTATTGCA+GGG | - | chr5_4:69923705-69923724 | Msa0867210:CDS | 35.0% | |
| TAATACCAGCATTATTGCAG+GGG | - | chr5_4:69923706-69923725 | Msa0867210:CDS | 35.0% | |
| TATTGCCTTTGCAATGTACT+TGG | - | chr5_4:69923805-69923824 | Msa0867210:CDS | 35.0% | |
| GATTACCAAGTACATTGCAA+AGG | + | chr5_4:69923813-69923832 | None:intergenic | 35.0% | |
| ! | TGCAATGTACTTGGTAATCT+TGG | - | chr5_4:69923814-69923833 | Msa0867210:CDS | 35.0% |
| TCCAACAATTAGATTTCGTG+TGG | - | chr5_4:69923853-69923872 | Msa0867210:CDS | 35.0% | |
| ACCACACGAAATCTAATTGT+TGG | + | chr5_4:69923857-69923876 | None:intergenic | 35.0% | |
| AACTGTTGTCTTCTTTCCTT+CGG | - | chr5_4:69923879-69923898 | Msa0867210:CDS | 35.0% | |
| !!! | TCACGTCAGCGTTTTTTTTA+CGG | - | chr5_4:69923970-69923989 | Msa0867210:CDS | 35.0% |
| ! | TTTTACGGTGAGTTAACAGA+AGG | - | chr5_4:69923985-69924004 | Msa0867210:CDS | 35.0% |
| TAAAGGCTTAATTACACCAC+AGG | + | chr5_4:69924163-69924182 | None:intergenic | 35.0% | |
| AGAGAGATGGAGAGAAATAA+AGG | + | chr5_4:69924180-69924199 | None:intergenic | 35.0% | |
| TTTAACCTTTCCCTTCATTC+TGG | - | chr5_4:69924229-69924248 | Msa0867210:intron | 35.0% | |
| TTAACCTTTCCCTTCATTCT+GGG | - | chr5_4:69924230-69924249 | Msa0867210:intron | 35.0% | |
| !!! | TTTTTGAGACCCAGAATGAA+GGG | + | chr5_4:69924242-69924261 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGACCCAGAATGA+AGG | + | chr5_4:69924243-69924262 | None:intergenic | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr5_4:69924290-69924309 | None:intergenic | 35.0% |
| AACTGTTCAATTTCACACAG+AGG | - | chr5_4:69924383-69924402 | Msa0867210:intron | 35.0% | |
| GAAAAGAGGAGGTAAATGAT+TGG | + | chr5_4:69924455-69924474 | None:intergenic | 35.0% | |
| ! | TAACTTCTGTTTTGCAGTCA+GGG | + | chr5_4:69924714-69924733 | None:intergenic | 35.0% |
| AACTCTATCCCATATGCTAA+AGG | - | chr5_4:69924769-69924788 | Msa0867210:intron | 35.0% | |
| ACTCTATCCCATATGCTAAA+GGG | - | chr5_4:69924770-69924789 | Msa0867210:intron | 35.0% | |
| GTGATGCAAGTTCATATATC+TGG | - | chr5_4:69924925-69924944 | Msa0867210:intron | 35.0% | |
| GATGCAAGTTCATATATCTG+GGG | - | chr5_4:69924927-69924946 | Msa0867210:intron | 35.0% | |
| ! | GTGATGATGATACAGCTAAT+TGG | + | chr5_4:69925145-69925164 | None:intergenic | 35.0% |
| ! | CTCTCTGCTTCTCTTTGAAA+TGG | - | chr5_4:69921438-69921457 | Msa0867210:three_prime_UTR | 40.0% |
| !! | CTGCTTCTCTTTGAAATGGT+AGG | - | chr5_4:69921442-69921461 | Msa0867210:three_prime_UTR | 40.0% |
| AATCTCTTCCTCCCAAGATT+TGG | + | chr5_4:69921473-69921492 | None:intergenic | 40.0% | |
| !! | GGTGGTGCTATGAAGAAATT+GGG | + | chr5_4:69921527-69921546 | None:intergenic | 40.0% |
| TATGAAGTACGGACACTTCT+CGG | - | chr5_4:69922117-69922136 | Msa0867210:three_prime_UTR | 40.0% | |
| !! | GACTTAGCTTTGTAACCTCA+AGG | + | chr5_4:69922336-69922355 | None:intergenic | 40.0% |
| !! | GTGAAGAGCGTAACAGATTT+TGG | + | chr5_4:69922464-69922483 | None:intergenic | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr5_4:69922577-69922596 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr5_4:69922574-69922593 | Msa0867210:intron | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | + | chr5_4:69922590-69922609 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr5_4:69922601-69922620 | None:intergenic | 40.0% | |
| CTGTTTACTTCACAAACGGT+TGG | - | chr5_4:69922644-69922663 | Msa0867210:intron | 40.0% | |
| CGCCATTGTACTTGAAGAAA+AGG | + | chr5_4:69922711-69922730 | None:intergenic | 40.0% | |
| TGGACTTAGTTTCTGTGAGA+AGG | - | chr5_4:69922759-69922778 | Msa0867210:intron | 40.0% | |
| ! | CCTTTTACCAGTTAATTGGG+AGG | + | chr5_4:69922965-69922984 | None:intergenic | 40.0% |
| CCTCCCAATTAACTGGTAAA+AGG | - | chr5_4:69922962-69922981 | Msa0867210:intron | 40.0% | |
| ! | TAAGAGAGCACATGATTTGG+TGG | - | chr5_4:69923047-69923066 | Msa0867210:intron | 40.0% |
| ACCTGAGTGTTCTTTGTTAC+AGG | + | chr5_4:69923073-69923092 | None:intergenic | 40.0% | |
| ! | AGTCAGAGCAAAGCTTTGTA+TGG | - | chr5_4:69923217-69923236 | Msa0867210:intron | 40.0% |
| AAGGGAAAGACTTAGGACTT+TGG | + | chr5_4:69923304-69923323 | None:intergenic | 40.0% | |
| !!! | CCACGTCAGCGTTTTTTTTA+CGG | + | chr5_4:69923570-69923589 | None:intergenic | 40.0% |
| TTGGGGAAATGTAAGGGTAA+AGG | + | chr5_4:69923617-69923636 | None:intergenic | 40.0% | |
| AATCAGGAGAAGATAACCGA+AGG | + | chr5_4:69923898-69923917 | None:intergenic | 40.0% | |
| GCACACTGTTACAGAGTTAA+AGG | - | chr5_4:69924016-69924035 | Msa0867210:intron | 40.0% | |
| TAAAATGGAGAGGAGCTTGT+TGG | + | chr5_4:69924213-69924232 | None:intergenic | 40.0% | |
| AGGGAAAGGTTAAAATGGAG+AGG | + | chr5_4:69924223-69924242 | None:intergenic | 40.0% | |
| ! | CAGACAAGTATCAGTTTGCT+AGG | + | chr5_4:69924291-69924310 | None:intergenic | 40.0% |
| ACGTGAAACATTGATATCGC+CGG | + | chr5_4:69924502-69924521 | None:intergenic | 40.0% | |
| ATCTGCTTGACAAACTGATC+TGG | - | chr5_4:69924621-69924640 | Msa0867210:intron | 40.0% | |
| TGTGCAGCAGAGAAATGATA+TGG | + | chr5_4:69924688-69924707 | None:intergenic | 40.0% | |
| ! | GTAACTTCTGTTTTGCAGTC+AGG | + | chr5_4:69924715-69924734 | None:intergenic | 40.0% |
| CTGTTCTCCCTTTAGCATAT+GGG | + | chr5_4:69924780-69924799 | None:intergenic | 40.0% | |
| ACTGTTCTCCCTTTAGCATA+TGG | + | chr5_4:69924781-69924800 | None:intergenic | 40.0% | |
| TCTCCGTTTAGCATATGTGT+TGG | + | chr5_4:69924809-69924828 | None:intergenic | 40.0% | |
| ! | CAAGTTCATATATCTGGGGT+TGG | - | chr5_4:69924931-69924950 | Msa0867210:intron | 40.0% |
| ! | TCATATATCTGGGGTTGGAA+AGG | - | chr5_4:69924936-69924955 | Msa0867210:intron | 40.0% |
| AAGGTCTTGACCAGCAAAAT+GGG | - | chr5_4:69924959-69924978 | Msa0867210:intron | 40.0% | |
| TTGACCAGCAAAATGGGAAT+GGG | - | chr5_4:69924965-69924984 | Msa0867210:intron | 40.0% | |
| CAAGAACGTTAGCAGGTAAA+CGG | + | chr5_4:69925018-69925037 | None:intergenic | 40.0% | |
| TCACAAACAAGAACGTTAGC+AGG | + | chr5_4:69925025-69925044 | None:intergenic | 40.0% | |
| CAGTTCACGAGGAAGATGAA+AGG | + | chr5_4:69921357-69921376 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACTGTTGA+AGG | - | chr5_4:69921361-69921380 | Msa0867210:three_prime_UTR | 45.0% | |
| CTTCCTCGTGAACTGTTGAA+GGG | - | chr5_4:69921362-69921381 | Msa0867210:three_prime_UTR | 45.0% | |
| AAACCCTTCAACAGTTCACG+AGG | + | chr5_4:69921368-69921387 | None:intergenic | 45.0% | |
| !! | TGGTAGGAAGCACCAAATCT+TGG | - | chr5_4:69921458-69921477 | Msa0867210:three_prime_UTR | 45.0% |
| !! | GGTAGGAAGCACCAAATCTT+GGG | - | chr5_4:69921459-69921478 | Msa0867210:three_prime_UTR | 45.0% |
| CTTGGGAGGAAGAGATTTAC+TGG | - | chr5_4:69921476-69921495 | Msa0867210:three_prime_UTR | 45.0% | |
| !! | CGGTGGTGCTATGAAGAAAT+TGG | + | chr5_4:69921528-69921547 | None:intergenic | 45.0% |
| GTTCTGTTTGGGAGTTTGCA+AGG | - | chr5_4:69921956-69921975 | Msa0867210:intron | 45.0% | |
| TGTTTGGGAGTTTGCAAGGA+GGG | - | chr5_4:69921960-69921979 | Msa0867210:intron | 45.0% | |
| !! | GAGAAGTGTCCGTACTTCAT+AGG | + | chr5_4:69922118-69922137 | None:intergenic | 45.0% |
| TGACTATGAAGCACGGACAT+CGG | + | chr5_4:69922273-69922292 | None:intergenic | 45.0% | |
| ! | TACACTTGAGGTGCTAGCTA+AGG | + | chr5_4:69922358-69922377 | None:intergenic | 45.0% |
| CAACTCCACTAGGACCTTTA+AGG | + | chr5_4:69922591-69922610 | None:intergenic | 45.0% | |
| GTCATGCTCAAACCGAACAA+GGG | - | chr5_4:69922809-69922828 | Msa0867210:intron | 45.0% | |
| TCATGCTCAAACCGAACAAG+GGG | - | chr5_4:69922810-69922829 | Msa0867210:intron | 45.0% | |
| ! | CACAGACTTGTTTGTGTCCT+TGG | + | chr5_4:69922845-69922864 | None:intergenic | 45.0% |
| CAAGGACACAAACAAGTCTG+TGG | - | chr5_4:69922843-69922862 | Msa0867210:intron | 45.0% | |
| !! | TACTACTTTTGATGCGGGTG+TGG | - | chr5_4:69922876-69922895 | Msa0867210:intron | 45.0% |
| !!! | TAGCTGCTTTTGGTAATCCG+AGG | + | chr5_4:69923020-69923039 | None:intergenic | 45.0% |
| GCCTGTAACAAAGAACACTC+AGG | - | chr5_4:69923069-69923088 | Msa0867210:intron | 45.0% | |
| TCTCGGCTTAATTACACCAC+AGG | - | chr5_4:69923377-69923396 | Msa0867210:intron | 45.0% | |
| CGTCAAACTTAAAGGACCTG+TGG | + | chr5_4:69924144-69924163 | None:intergenic | 45.0% | |
| CCGTAAAAAAAACGCTGACG+TGG | - | chr5_4:69923567-69923586 | Msa0867210:CDS | 45.0% | |
| GAGTCAGGGTTTGAGAATTG+GGG | + | chr5_4:69923634-69923653 | None:intergenic | 45.0% | |
| GGAGTCAGGGTTTGAGAATT+GGG | + | chr5_4:69923635-69923654 | None:intergenic | 45.0% | |
| TGGAGTCAGGGTTTGAGAAT+TGG | + | chr5_4:69923636-69923655 | None:intergenic | 45.0% | |
| TTCTTCCCCTGCAATAATGC+TGG | + | chr5_4:69923714-69923733 | None:intergenic | 45.0% | |
| CGTCAAACTTAAAGGACCTG+TGG | - | chr5_4:69924144-69924163 | Msa0867210:intron | 45.0% | |
| ! | TGGCAGGTTAGTTAGAGAGA+TGG | + | chr5_4:69924193-69924212 | None:intergenic | 45.0% |
| CATCCATCGTGCATAGAAGT+GGG | - | chr5_4:69924406-69924425 | Msa0867210:intron | 45.0% | |
| GCTTGACAAACTGATCTGGT+TGG | - | chr5_4:69924625-69924644 | Msa0867210:intron | 45.0% | |
| GTTACGCTTCGCAATTCAAG+AGG | - | chr5_4:69924730-69924749 | Msa0867210:intron | 45.0% | |
| GCAATTCAAGAGGCGAATGT+TGG | - | chr5_4:69924740-69924759 | Msa0867210:intron | 45.0% | |
| ! | AGACCAGTTCACACCTTTTG+TGG | - | chr5_4:69924826-69924845 | Msa0867210:intron | 45.0% |
| ! | GACCAGTTCACACCTTTTGT+GGG | - | chr5_4:69924827-69924846 | Msa0867210:intron | 45.0% |
| ! | ACCAGTTCACACCTTTTGTG+GGG | - | chr5_4:69924828-69924847 | Msa0867210:intron | 45.0% |
| ! | ATATCTGGGGTTGGAAAGGA+AGG | - | chr5_4:69924940-69924959 | Msa0867210:intron | 45.0% |
| GAAGGTCTTGACCAGCAAAA+TGG | - | chr5_4:69924958-69924977 | Msa0867210:intron | 45.0% | |
| CTTGACCAGCAAAATGGGAA+TGG | - | chr5_4:69924964-69924983 | Msa0867210:intron | 45.0% | |
| ! | GTTTCCCATTCCCATTTTGC+TGG | + | chr5_4:69924972-69924991 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAATGAAAA+AGG | + | chr5_4:69923109-69923128 | None:intergenic | 5.0% |
| !! | AAATAATTTATAATTAATAC+TGG | + | chr5_4:69923334-69923353 | None:intergenic | 5.0% |
| !!! | TTAAATATTTTAACAAAATA+TGG | + | chr5_4:69924477-69924496 | None:intergenic | 5.0% |
| GAGAGAGGGAAAGGGTTCAA+AGG | + | chr5_4:69921413-69921432 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGGGAAA+GGG | + | chr5_4:69921421-69921440 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGGGAA+AGG | + | chr5_4:69921422-69921441 | None:intergenic | 50.0% | |
| AGCAGAGAGAGAGAGAGAGA+GGG | + | chr5_4:69921427-69921446 | None:intergenic | 50.0% | |
| AAGCAGAGAGAGAGAGAGAG+AGG | + | chr5_4:69921428-69921447 | None:intergenic | 50.0% | |
| !! | AGGAAGCACCAAATCTTGGG+AGG | - | chr5_4:69921462-69921481 | Msa0867210:three_prime_UTR | 50.0% |
| CTGTTTGGGAGTTTGCAAGG+AGG | - | chr5_4:69921959-69921978 | Msa0867210:intron | 50.0% | |
| GTTTGGGAGTTTGCAAGGAG+GGG | - | chr5_4:69921961-69921980 | Msa0867210:intron | 50.0% | |
| GAGTTTGCAAGGAGGGGATA+AGG | - | chr5_4:69921967-69921986 | Msa0867210:intron | 50.0% | |
| CAGATAGTGTTTGCGGAACC+AGG | + | chr5_4:69922036-69922055 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr5_4:69922583-69922602 | Msa0867210:intron | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr5_4:69922593-69922612 | Msa0867210:intron | 50.0% | |
| GGTCATGCTCAAACCGAACA+AGG | - | chr5_4:69922808-69922827 | Msa0867210:intron | 50.0% | |
| CATGCTCAAACCGAACAAGG+GGG | - | chr5_4:69922811-69922830 | Msa0867210:intron | 50.0% | |
| !! | AACCGAACAAGGGGGTATCA+AGG | - | chr5_4:69922819-69922838 | Msa0867210:intron | 50.0% |
| ATCAGCCATGCACTTCTCAG+GGG | + | chr5_4:69922911-69922930 | None:intergenic | 50.0% | |
| CATCAGCCATGCACTTCTCA+GGG | + | chr5_4:69922912-69922931 | None:intergenic | 50.0% | |
| AATACTCTGTCTCCAGCCCA+AGG | - | chr5_4:69923138-69923157 | Msa0867210:intron | 50.0% | |
| !! | CCTCGGATTAGTCAGTCCTT+GGG | + | chr5_4:69923157-69923176 | None:intergenic | 50.0% |
| CCAAGGACTGACTAATCCGA+GGG | - | chr5_4:69923155-69923174 | Msa0867210:intron | 50.0% | |
| CAAGGACTGACTAATCCGAG+GGG | - | chr5_4:69923156-69923175 | Msa0867210:intron | 50.0% | |
| ATGGACTTGCCCACCAAAGT+TGG | - | chr5_4:69923236-69923255 | Msa0867210:intron | 50.0% | |
| ATCAAACCCGAGACCTTGAG+AGG | - | chr5_4:69923270-69923289 | Msa0867210:intron | 50.0% | |
| ! | TTTGGAGTGTGCTCCTCTCA+AGG | + | chr5_4:69923286-69923305 | None:intergenic | 50.0% |
| TTATTGCAGGGGAAGAACGC+AGG | - | chr5_4:69923717-69923736 | Msa0867210:CDS | 50.0% | |
| GAGACCCAGAATGAAGGGAA+AGG | + | chr5_4:69924237-69924256 | None:intergenic | 50.0% | |
| GCATCCATCGTGCATAGAAG+TGG | - | chr5_4:69924405-69924424 | Msa0867210:intron | 50.0% | |
| CTTCCCACTTCTATGCACGA+TGG | + | chr5_4:69924412-69924431 | None:intergenic | 50.0% | |
| CATCGTGCATAGAAGTGGGA+AGG | - | chr5_4:69924410-69924429 | Msa0867210:intron | 50.0% | |
| ! | CCAGTTCACACCTTTTGTGG+GGG | - | chr5_4:69924829-69924848 | Msa0867210:intron | 50.0% |
| ! | TTCACACCTTTTGTGGGGGT+TGG | - | chr5_4:69924833-69924852 | Msa0867210:intron | 50.0% |
| ! | TCACACCTTTTGTGGGGGTT+GGG | - | chr5_4:69924834-69924853 | Msa0867210:intron | 50.0% |
| !! | GTGTCGGTGTCTTTTGGCGT+CGG | + | chr5_4:69922178-69922197 | None:intergenic | 55.0% |
| GGCCTTGATACCCCCTTGTT+CGG | + | chr5_4:69922824-69922843 | None:intergenic | 55.0% | |
| !! | ACAAGGGGGTATCAAGGCCA+AGG | - | chr5_4:69922825-69922844 | Msa0867210:intron | 55.0% |
| ! | TGCTTCCCCTGAGAAGTGCA+TGG | - | chr5_4:69922903-69922922 | Msa0867210:intron | 55.0% |
| GCATCAGCCATGCACTTCTC+AGG | + | chr5_4:69922913-69922932 | None:intergenic | 55.0% | |
| ATTGGGAGGGAGCTGCAACA+GGG | + | chr5_4:69922951-69922970 | None:intergenic | 55.0% | |
| AATTGGGAGGGAGCTGCAAC+AGG | + | chr5_4:69922952-69922971 | None:intergenic | 55.0% | |
| GCAGCTCCCTCCCAATTAAC+TGG | - | chr5_4:69922955-69922974 | Msa0867210:intron | 55.0% | |
| !! | GGATTAGTCAGTCCTTGGGC+TGG | + | chr5_4:69923153-69923172 | None:intergenic | 55.0% |
| CCCAAGGACTGACTAATCCG+AGG | - | chr5_4:69923154-69923173 | Msa0867210:intron | 55.0% | |
| !! | CCCTCGGATTAGTCAGTCCT+TGG | + | chr5_4:69923158-69923177 | None:intergenic | 55.0% |
| TTAAATGGGACCCCCGCAAG+TGG | + | chr5_4:69923196-69923215 | None:intergenic | 55.0% | |
| !! | ATTCCCCTCGGTGCCAACTT+TGG | + | chr5_4:69923252-69923271 | None:intergenic | 55.0% |
| GTCTCGGGTTTGATTCCCCT+CGG | + | chr5_4:69923264-69923283 | None:intergenic | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+GGG | + | chr5_4:69923279-69923298 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAAGGTCT+CGG | + | chr5_4:69923280-69923299 | None:intergenic | 55.0% | |
| !! | ATGGAGAGGAGCTTGTTGGC+AGG | + | chr5_4:69924209-69924228 | None:intergenic | 55.0% |
| ! | CCCCCACAAAAGGTGTGAAC+TGG | + | chr5_4:69924832-69924851 | None:intergenic | 55.0% |
| TTGGGAGGGAGCTGCAACAG+GGG | + | chr5_4:69922950-69922969 | None:intergenic | 60.0% | |
| CCAATCCCGCAGTCCACTTG+CGG | - | chr5_4:69923180-69923199 | Msa0867210:intron | 60.0% | |
| CAATCCCGCAGTCCACTTGC+GGG | - | chr5_4:69923181-69923200 | Msa0867210:intron | 60.0% | |
| AATCCCGCAGTCCACTTGCG+GGG | - | chr5_4:69923182-69923201 | Msa0867210:intron | 60.0% | |
| !! | CCCTCGGTGCCAACTTTGGT+GGG | + | chr5_4:69923248-69923267 | None:intergenic | 60.0% |
| ! | CCCACCAAAGTTGGCACCGA+GGG | - | chr5_4:69923245-69923264 | Msa0867210:intron | 60.0% |
| ! | CCACCAAAGTTGGCACCGAG+GGG | - | chr5_4:69923246-69923265 | Msa0867210:intron | 60.0% |
| ! | CACCTTTTGTGGGGGTTGGG+TGG | - | chr5_4:69924837-69924856 | Msa0867210:intron | 60.0% |
| GACTGCGGGATTGGACCCCT+CGG | + | chr5_4:69923174-69923193 | None:intergenic | 65.0% | |
| !! | CCGCAAGTGGACTGCGGGAT+TGG | + | chr5_4:69923183-69923202 | None:intergenic | 65.0% |
| ATCCCGCAGTCCACTTGCGG+GGG | - | chr5_4:69923183-69923202 | Msa0867210:intron | 65.0% | |
| GCCCACCAAAGTTGGCACCG+AGG | - | chr5_4:69923244-69923263 | Msa0867210:intron | 65.0% | |
| !! | CCCCTCGGTGCCAACTTTGG+TGG | + | chr5_4:69923249-69923268 | None:intergenic | 65.0% |
| GGCCACCCAACCCCCACAAA+AGG | + | chr5_4:69924842-69924861 | None:intergenic | 65.0% | |
| GGAGGGAGCTGCAACAGGGG+TGG | + | chr5_4:69922947-69922966 | None:intergenic | 70.0% | |
| !! | GACCCCCGCAAGTGGACTGC+GGG | + | chr5_4:69923188-69923207 | None:intergenic | 70.0% |
| !! | GGACCCCCGCAAGTGGACTG+CGG | + | chr5_4:69923189-69923208 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 69921326 | 69925221 | 69921326 | ID=Msa0867210;Name=Msa0867210 |
| chr5_4 | mRNA | 69921326 | 69925221 | 69921326 | ID=Msa0867210-mRNA-1;Parent=Msa0867210;Name=Msa0867210-mRNA-1;_AED=0.33;_eAED=0.33;_QI=131|0.66|0.75|1|1|1|4|666|216 |
| chr5_4 | exon | 69921326 | 69921868 | 69921326 | ID=Msa0867210-mRNA-1:exon:21993;Parent=Msa0867210-mRNA-1 |
| chr5_4 | exon | 69922020 | 69922144 | 69922020 | ID=Msa0867210-mRNA-1:exon:21992;Parent=Msa0867210-mRNA-1 |
| chr5_4 | exon | 69923475 | 69924015 | 69923475 | ID=Msa0867210-mRNA-1:exon:21991;Parent=Msa0867210-mRNA-1 |
| chr5_4 | exon | 69924983 | 69925221 | 69924983 | ID=Msa0867210-mRNA-1:exon:21990;Parent=Msa0867210-mRNA-1 |
| chr5_4 | five_prime_UTR | 69925091 | 69925221 | 69925091 | ID=Msa0867210-mRNA-1:five_prime_utr;Parent=Msa0867210-mRNA-1 |
| chr5_4 | CDS | 69924983 | 69925090 | 69924983 | ID=Msa0867210-mRNA-1:cds;Parent=Msa0867210-mRNA-1 |
| chr5_4 | CDS | 69923475 | 69924015 | 69923475 | ID=Msa0867210-mRNA-1:cds;Parent=Msa0867210-mRNA-1 |
| chr5_4 | CDS | 69922143 | 69922144 | 69922143 | ID=Msa0867210-mRNA-1:cds;Parent=Msa0867210-mRNA-1 |
| chr5_4 | three_prime_UTR | 69922020 | 69922142 | 69922020 | ID=Msa0867210-mRNA-1:three_prime_utr;Parent=Msa0867210-mRNA-1 |
| chr5_4 | three_prime_UTR | 69921326 | 69921868 | 69921326 | ID=Msa0867210-mRNA-1:three_prime_utr;Parent=Msa0867210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
