Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145450 | XP_013466025.1 | 83.602 | 372 | 23 | 1 | 1 | 334 | 1 | 372 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145450 | sp|Q8RYD1|REM16_ARATH | 34.675 | 323 | 177 | 8 | 8 | 315 | 11 | 314 | 1.17e-47 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145450 | A0A072VDG5 | 83.602 | 372 | 23 | 1 | 1 | 334 | 1 | 372 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145450 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061080 | Msa0145450 | 0.801142 | 1.035285e-48 | -8.615850e-47 |
| Msa0101600 | Msa0145450 | 0.802491 | 5.471531e-49 | -8.615850e-47 |
| Msa0105620 | Msa0145450 | 0.801559 | 8.505339e-49 | -8.615850e-47 |
| Msa0145450 | Msa0262050 | 0.802461 | 5.548999e-49 | -8.615850e-47 |
| Msa0145450 | Msa0388700 | 0.801808 | 7.560641e-49 | -8.615850e-47 |
| Msa0145450 | Msa0660490 | 0.822863 | 1.886967e-53 | -8.615850e-47 |
| Msa0145450 | Msa0677290 | 0.802855 | 4.602654e-49 | -8.615850e-47 |
| Msa0145450 | Msa0867210 | 0.870164 | 1.794590e-66 | -8.615850e-47 |
| Msa0145450 | Msa0867220 | 0.807001 | 6.255950e-50 | -8.615850e-47 |
| Msa0145450 | Msa1009820 | 0.804390 | 2.210507e-49 | -8.615850e-47 |
| Msa0145450 | Msa1051200 | 0.812937 | 3.297413e-51 | -8.615850e-47 |
| Msa0145450 | Msa1097920 | 0.800402 | 1.465554e-48 | -8.615850e-47 |
| Msa0145450 | Msa1358250 | 0.801175 | 1.019139e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145450 | MtrunA17_Chr1g0154191 | 83.602 | 372 | 23 | 1 | 1 | 334 | 1 | 372 | 0.0 | 627 |
| Msa0145450 | MtrunA17_Chr1g0154171 | 66.488 | 373 | 63 | 4 | 5 | 333 | 6 | 360 | 3.63e-166 | 467 |
| Msa0145450 | MtrunA17_Chr1g0154161 | 67.273 | 330 | 91 | 3 | 5 | 334 | 13 | 325 | 1.20e-158 | 446 |
| Msa0145450 | MtrunA17_Chr1g0154131 | 58.876 | 338 | 95 | 6 | 6 | 326 | 168 | 478 | 6.34e-130 | 379 |
| Msa0145450 | MtrunA17_Chr1g0154131 | 45.016 | 311 | 123 | 5 | 4 | 314 | 8 | 270 | 2.36e-77 | 244 |
| Msa0145450 | MtrunA17_Chr1g0154211 | 50.739 | 406 | 109 | 7 | 2 | 328 | 3 | 396 | 3.09e-129 | 375 |
| Msa0145450 | MtrunA17_Chr1g0154111 | 54.400 | 375 | 103 | 5 | 4 | 325 | 8 | 367 | 3.71e-128 | 379 |
| Msa0145450 | MtrunA17_Chr1g0154111 | 55.429 | 175 | 62 | 4 | 37 | 197 | 368 | 540 | 8.55e-47 | 167 |
| Msa0145450 | MtrunA17_Chr1g0154151 | 57.658 | 333 | 70 | 4 | 37 | 326 | 19 | 323 | 7.93e-124 | 358 |
| Msa0145450 | MtrunA17_Chr1g0154071 | 50.964 | 363 | 112 | 6 | 10 | 322 | 145 | 491 | 2.15e-112 | 335 |
| Msa0145450 | MtrunA17_Chr1g0154071 | 77.941 | 136 | 29 | 1 | 2 | 137 | 8 | 142 | 1.09e-65 | 214 |
| Msa0145450 | MtrunA17_Chr1g0154241 | 65.581 | 215 | 36 | 3 | 1 | 182 | 1 | 210 | 2.42e-88 | 266 |
| Msa0145450 | MtrunA17_Chr1g0154101 | 50.667 | 300 | 101 | 4 | 3 | 302 | 6 | 258 | 5.74e-84 | 270 |
| Msa0145450 | MtrunA17_Chr1g0154101 | 62.617 | 214 | 43 | 2 | 6 | 184 | 168 | 379 | 8.63e-80 | 259 |
| Msa0145450 | MtrunA17_Chr1g0154101 | 40.120 | 334 | 152 | 8 | 36 | 333 | 521 | 842 | 5.74e-58 | 200 |
| Msa0145450 | MtrunA17_Chr1g0154101 | 46.429 | 168 | 62 | 3 | 177 | 327 | 455 | 611 | 3.11e-39 | 147 |
| Msa0145450 | MtrunA17_Chr1g0154251 | 60.714 | 224 | 45 | 5 | 3 | 184 | 8 | 230 | 2.74e-82 | 258 |
| Msa0145450 | MtrunA17_Chr1g0154041 | 35.537 | 363 | 161 | 8 | 21 | 327 | 15 | 360 | 6.70e-62 | 207 |
| Msa0145450 | MtrunA17_Chr1g0154041 | 67.626 | 139 | 34 | 1 | 196 | 334 | 469 | 596 | 1.08e-58 | 199 |
| Msa0145450 | MtrunA17_Chr7g0233561 | 25.902 | 305 | 206 | 7 | 20 | 314 | 16 | 310 | 3.09e-25 | 103 |
| Msa0145450 | MtrunA17_Chr3g0131891 | 27.742 | 310 | 187 | 10 | 16 | 314 | 18 | 301 | 1.67e-24 | 101 |
| Msa0145450 | MtrunA17_Chr1g0154121 | 43.119 | 109 | 44 | 2 | 235 | 334 | 2 | 101 | 2.13e-22 | 90.1 |
| Msa0145450 | MtrunA17_Chr7g0233531 | 26.712 | 292 | 167 | 6 | 38 | 314 | 2 | 261 | 1.61e-21 | 92.4 |
| Msa0145450 | MtrunA17_Chr1g0208771 | 26.316 | 323 | 181 | 12 | 26 | 320 | 1 | 294 | 2.45e-20 | 91.3 |
| Msa0145450 | MtrunA17_Chr7g0233521 | 24.731 | 279 | 189 | 6 | 38 | 314 | 2 | 261 | 1.68e-18 | 84.3 |
| Msa0145450 | MtrunA17_Chr7g0233541 | 26.159 | 302 | 173 | 12 | 38 | 314 | 2 | 278 | 3.25e-18 | 83.6 |
| Msa0145450 | MtrunA17_Chr3g0077411 | 23.183 | 289 | 179 | 8 | 20 | 307 | 260 | 506 | 4.81e-17 | 82.0 |
| Msa0145450 | MtrunA17_Chr5g0429931 | 23.420 | 269 | 155 | 5 | 38 | 305 | 11 | 229 | 3.42e-16 | 77.0 |
| Msa0145450 | MtrunA17_Chr8g0390841 | 24.242 | 330 | 200 | 12 | 15 | 320 | 32 | 335 | 7.13e-16 | 78.6 |
| Msa0145450 | MtrunA17_Chr7g0233571 | 34.694 | 98 | 64 | 0 | 15 | 112 | 3 | 100 | 7.02e-14 | 70.1 |
| Msa0145450 | MtrunA17_Chr3g0103171 | 22.261 | 283 | 190 | 8 | 38 | 314 | 6 | 264 | 3.47e-13 | 68.6 |
| Msa0145450 | MtrunA17_Chr1g0163221 | 24.092 | 303 | 177 | 11 | 20 | 304 | 9 | 276 | 4.68e-13 | 69.3 |
| Msa0145450 | MtrunA17_Chr3g0077461 | 24.667 | 300 | 152 | 9 | 21 | 314 | 236 | 467 | 3.41e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145450 | AT4G33280.1 | 34.675 | 323 | 177 | 8 | 8 | 315 | 11 | 314 | 1.19e-48 | 166 |
| Msa0145450 | AT4G33280.2 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 1.43e-43 | 152 |
| Msa0145450 | AT4G33280.3 | 53.788 | 132 | 58 | 2 | 8 | 138 | 11 | 140 | 1.26e-42 | 152 |
| Msa0145450 | AT4G34400.2 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 7.91e-18 | 84.0 |
| Msa0145450 | AT4G34400.1 | 37.273 | 110 | 63 | 3 | 15 | 121 | 8 | 114 | 7.91e-18 | 84.0 |
| Msa0145450 | AT3G18990.2 | 23.547 | 344 | 193 | 10 | 22 | 312 | 6 | 332 | 1.94e-17 | 82.8 |
| Msa0145450 | AT3G18990.1 | 23.547 | 344 | 193 | 10 | 22 | 312 | 6 | 332 | 2.00e-17 | 82.4 |
| Msa0145450 | AT5G66980.1 | 22.848 | 302 | 180 | 9 | 34 | 305 | 21 | 299 | 2.52e-14 | 73.2 |
| Msa0145450 | AT5G60130.5 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 6.35e-14 | 70.9 |
| Msa0145450 | AT3G06160.1 | 27.168 | 173 | 117 | 4 | 22 | 188 | 26 | 195 | 6.45e-14 | 72.0 |
| Msa0145450 | AT3G06160.5 | 27.168 | 173 | 117 | 4 | 22 | 188 | 11 | 180 | 6.81e-14 | 71.6 |
| Msa0145450 | AT3G06160.4 | 27.168 | 173 | 117 | 4 | 22 | 188 | 11 | 180 | 6.81e-14 | 71.6 |
| Msa0145450 | AT3G06160.3 | 27.168 | 173 | 117 | 4 | 22 | 188 | 11 | 180 | 6.81e-14 | 71.6 |
| Msa0145450 | AT5G60130.3 | 41.573 | 89 | 47 | 2 | 36 | 119 | 1 | 89 | 8.39e-14 | 71.2 |
| Msa0145450 | AT5G60130.2 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.01e-13 | 71.2 |
| Msa0145450 | AT5G60130.4 | 41.573 | 89 | 47 | 2 | 36 | 119 | 24 | 112 | 1.15e-13 | 71.2 |
| Msa0145450 | AT3G06160.2 | 27.168 | 173 | 117 | 4 | 22 | 188 | 70 | 239 | 1.19e-13 | 71.6 |
| Msa0145450 | AT5G60130.1 | 41.573 | 89 | 47 | 2 | 36 | 119 | 27 | 115 | 1.28e-13 | 71.2 |
| Msa0145450 | AT3G06220.1 | 31.633 | 98 | 64 | 2 | 22 | 119 | 11 | 105 | 1.71e-13 | 68.2 |
| Msa0145450 | AT3G17010.1 | 21.843 | 293 | 193 | 8 | 37 | 324 | 37 | 298 | 1.20e-11 | 65.1 |
| Msa0145450 | AT1G49475.1 | 36.264 | 91 | 57 | 1 | 22 | 112 | 34 | 123 | 1.30e-11 | 63.2 |
| Msa0145450 | AT3G53310.1 | 36.709 | 79 | 50 | 0 | 34 | 112 | 22 | 100 | 1.97e-11 | 64.3 |
| Msa0145450 | AT3G18960.2 | 36.842 | 95 | 48 | 2 | 35 | 118 | 32 | 125 | 4.73e-11 | 61.6 |
| Msa0145450 | AT3G18960.1 | 36.842 | 95 | 48 | 2 | 35 | 118 | 32 | 125 | 7.49e-11 | 61.6 |
| Msa0145450 | AT4G31640.1 | 24.476 | 286 | 144 | 13 | 32 | 312 | 22 | 240 | 7.77e-11 | 63.2 |
Find 82 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGATAATAACATTAAATT+TGG | 0.154377 | 1_4:+5138836 | Msa0145450:CDS |
| CACAGACTTGTTTGTGTCCT+TGG | 0.171497 | 1_4:-5137616 | None:intergenic |
| CAACTCCACTAGGACCTTTA+AGG | 0.178570 | 1_4:-5137362 | None:intergenic |
| GTGATGCAAGTTCATATATC+TGG | 0.223627 | 1_4:+5138893 | Msa0145450:CDS |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1_4:+5137348 | Msa0145450:CDS |
| CGGTGGTGCTATGAAGAAAT+TGG | 0.266641 | 1_4:-5136290 | None:intergenic |
| GTGATGATGATACAGCTAAT+TGG | 0.290978 | 1_4:-5139109 | None:intergenic |
| CTTGGGAGGAAGAGATTTAC+TGG | 0.300092 | 1_4:+5136241 | Msa0145450:CDS |
| GAAGGTCTTGACCAGCAAAA+TGG | 0.302980 | 1_4:+5138926 | Msa0145450:CDS |
| TGAAATGGATGAACTGAAAA+TGG | 0.343707 | 1_4:-5136266 | None:intergenic |
| TATCAATGTTTCACGTACTA+TGG | 0.347323 | 1_4:+5138474 | Msa0145450:CDS |
| AATCTCTTCCTCCCAAGATT+TGG | 0.351389 | 1_4:-5136235 | None:intergenic |
| AATTGGGAGGGAGCTGCAAC+AGG | 0.351758 | 1_4:-5137723 | None:intergenic |
| CTCTCTGCTTCTCTTTGAAA+TGG | 0.357648 | 1_4:+5136203 | Msa0145450:exon |
| ACTGTTCTCCCTTTAGCATA+TGG | 0.359682 | 1_4:-5138746 | None:intergenic |
| TACAAGTTGTTGTTGAAAAT+CGG | 0.364741 | 1_4:-5136310 | None:intergenic |
| CGCCATTGTACTTGAAGAAA+AGG | 0.367579 | 1_4:-5137482 | None:intergenic |
| TCTTCCTCGTGAACTGTTGA+AGG | 0.369672 | 1_4:+5136128 | Msa0145450:five_prime_UTR |
| GCATCAGCCATGCACTTCTC+AGG | 0.387871 | 1_4:-5137684 | None:intergenic |
| TGTGCAGCAGAGAAATGATA+TGG | 0.401325 | 1_4:-5138653 | None:intergenic |
| GCAGCTCCCTCCCAATTAAC+TGG | 0.415607 | 1_4:+5137729 | Msa0145450:CDS |
| TTTGTTAAAATATTTAAAAC+CGG | 0.417027 | 1_4:+5138448 | Msa0145450:CDS |
| CTGTTCTCCCTTTAGCATAT+GGG | 0.419113 | 1_4:-5138745 | None:intergenic |
| AAGGTCTTGACCAGCAAAAT+GGG | 0.444958 | 1_4:+5138927 | Msa0145450:CDS |
| AACTCTATCCCATATGCTAA+AGG | 0.447966 | 1_4:+5138737 | Msa0145450:CDS |
| TGGTAGGAAGCACCAAATCT+TGG | 0.448666 | 1_4:+5136223 | Msa0145450:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.454776 | 1_4:-5138434 | None:intergenic |
| TATGAAGAAATTGGGTGAAA+TGG | 0.456523 | 1_4:-5136281 | None:intergenic |
| CAAGAACGTTAGCAGGTAAA+CGG | 0.456745 | 1_4:-5138983 | None:intergenic |
| GAAAAGAGGAGGTAAATGAT+TGG | 0.467251 | 1_4:-5138420 | None:intergenic |
| TGATGATGATACAGCTAATT+GGG | 0.467582 | 1_4:-5139108 | None:intergenic |
| TGATGCAAGTTCATATATCT+GGG | 0.470555 | 1_4:+5138894 | Msa0145450:CDS |
| GGTAGGAAGCACCAAATCTT+GGG | 0.471144 | 1_4:+5136224 | Msa0145450:CDS |
| CAAAGGTACAAAGCTAAAGT+AGG | 0.471868 | 1_4:-5136160 | None:intergenic |
| AACTCCACTAGGACCTTTAA+GGG | 0.479312 | 1_4:-5137361 | None:intergenic |
| AAACCAACACATATGCTAAA+CGG | 0.480555 | 1_4:+5138771 | Msa0145450:CDS |
| GATACTGTTTACTTCACAAA+CGG | 0.486582 | 1_4:+5137414 | Msa0145450:CDS |
| ACTCTATCCCATATGCTAAA+GGG | 0.488518 | 1_4:+5138738 | Msa0145450:CDS |
| TTGGGAGGGAGCTGCAACAG+GGG | 0.501107 | 1_4:-5137721 | None:intergenic |
| CTTGACCAGCAAAATGGGAA+TGG | 0.504154 | 1_4:+5138932 | Msa0145450:CDS |
| CTTCCTCGTGAACTGTTGAA+GGG | 0.506288 | 1_4:+5136129 | Msa0145450:five_prime_UTR |
| GCAATTCAAGAGGCGAATGT+TGG | 0.508378 | 1_4:+5138708 | Msa0145450:CDS |
| TTGACCAGCAAAATGGGAAT+GGG | 0.509143 | 1_4:+5138933 | Msa0145450:CDS |
| AAAAGAGGAGGTAAATGATT+GGG | 0.509472 | 1_4:-5138419 | None:intergenic |
| CTGCTTCTCTTTGAAATGGT+AGG | 0.526272 | 1_4:+5136207 | Msa0145450:exon |
| GGTCATGCTCAAACCGAACA+AGG | 0.526750 | 1_4:+5137582 | Msa0145450:CDS |
| CAAGTTCATATATCTGGGGT+TGG | 0.532218 | 1_4:+5138899 | Msa0145450:CDS |
| CATCAGCCATGCACTTCTCA+GGG | 0.533895 | 1_4:-5137683 | None:intergenic |
| AATGTTATTATCACGAACAA+AGG | 0.534520 | 1_4:-5138828 | None:intergenic |
| ATATCTGGGGTTGGAAAGGA+AGG | 0.539398 | 1_4:+5138908 | Msa0145450:CDS |
| CTGTTTACTTCACAAACGGT+TGG | 0.539585 | 1_4:+5137418 | Msa0145450:CDS |
| TCTCCGTTTAGCATATGTGT+TGG | 0.547322 | 1_4:-5138774 | None:intergenic |
| TCATATATCTGGGGTTGGAA+AGG | 0.547674 | 1_4:+5138904 | Msa0145450:CDS |
| GAGAGAGGGAAAGGGTTCAA+AGG | 0.552787 | 1_4:-5136177 | None:intergenic |
| TCACAAACAAGAACGTTAGC+AGG | 0.554809 | 1_4:-5138990 | None:intergenic |
| GGAGGGAGCTGCAACAGGGG+TGG | 0.557934 | 1_4:-5137718 | None:intergenic |
| TGGACTTAGTTTCTGTGAGA+AGG | 0.559379 | 1_4:+5137533 | Msa0145450:CDS |
| GGTGGTGCTATGAAGAAATT+GGG | 0.559533 | 1_4:-5136289 | None:intergenic |
| AAAGGTACAAAGCTAAAGTA+GGG | 0.563924 | 1_4:-5136159 | None:intergenic |
| GCATCCATCGTGCATAGAAG+TGG | 0.570003 | 1_4:+5138373 | Msa0145450:CDS |
| GTTACGCTTCGCAATTCAAG+AGG | 0.574465 | 1_4:+5138698 | Msa0145450:CDS |
| TGCTTCCCCTGAGAAGTGCA+TGG | 0.578286 | 1_4:+5137677 | Msa0145450:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578782 | 1_4:-5137372 | None:intergenic |
| AACAAAATATGGAAAAGAGG+AGG | 0.585641 | 1_4:-5138431 | None:intergenic |
| GTCATGCTCAAACCGAACAA+GGG | 0.590087 | 1_4:+5137583 | Msa0145450:CDS |
| ATTGGGAGGGAGCTGCAACA+GGG | 0.596413 | 1_4:-5137722 | None:intergenic |
| ACGTGAAACATTGATATCGC+CGG | 0.611796 | 1_4:-5138467 | None:intergenic |
| CTTCCCACTTCTATGCACGA+TGG | 0.624258 | 1_4:-5138377 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_4:+5137367 | Msa0145450:CDS |
| CATCCATCGTGCATAGAAGT+GGG | 0.629073 | 1_4:+5138374 | Msa0145450:CDS |
| CATCGTGCATAGAAGTGGGA+AGG | 0.630861 | 1_4:+5138378 | Msa0145450:CDS |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1_4:+5137357 | Msa0145450:CDS |
| TCATGCTCAAACCGAACAAG+GGG | 0.635196 | 1_4:+5137584 | Msa0145450:CDS |
| CAGTTCACGAGGAAGATGAA+AGG | 0.657063 | 1_4:-5136121 | None:intergenic |
| AAGTTGTTGTTGAAAATCGG+TGG | 0.662291 | 1_4:-5136307 | None:intergenic |
| AGGAAGCACCAAATCTTGGG+AGG | 0.669254 | 1_4:+5136227 | Msa0145450:CDS |
| AAACCCTTCAACAGTTCACG+AGG | 0.670720 | 1_4:-5136132 | None:intergenic |
| CGACATGAACTGAAATGCAG+CGG | 0.675891 | 1_4:-5139169 | None:intergenic |
| CAAGGACACAAACAAGTCTG+TGG | 0.678532 | 1_4:+5137617 | Msa0145450:CDS |
| ATCAGCCATGCACTTCTCAG+GGG | 0.683978 | 1_4:-5137682 | None:intergenic |
| CATGCTCAAACCGAACAAGG+GGG | 0.761893 | 1_4:+5137585 | Msa0145450:CDS |
| GATGCAAGTTCATATATCTG+GGG | 0.765392 | 1_4:+5138895 | Msa0145450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAACAAAATTTAAA+AGG | - | chr1_4:5136478-5136497 | None:intergenic | 10.0% |
| !! | TATAAAATATAAAAAAACCA+TGG | - | chr1_4:5136581-5136600 | None:intergenic | 10.0% |
| !! | ATAATTAAGTAAATTGTTTA+AGG | + | chr1_4:5136700-5136719 | Msa0145450:intron | 10.0% |
| !! | TTTATATTAATACTAGTAAA+AGG | - | chr1_4:5138104-5138123 | None:intergenic | 10.0% |
| !!! | TTTGTTAAAATATTTAAAAC+CGG | + | chr1_4:5138448-5138467 | Msa0145450:CDS | 10.0% |
| !!! | TTCATTTTTAATTTTCAACA+TGG | - | chr1_4:5136364-5136383 | None:intergenic | 15.0% |
| !! | AATAAAATTGTTAATTAACG+TGG | + | chr1_4:5136849-5136868 | Msa0145450:intron | 15.0% |
| !!! | AAATTTTCTATTTTAATTGC+AGG | + | chr1_4:5137284-5137303 | Msa0145450:intron | 15.0% |
| !! | AAAAAAAAAAATGAAAAAGG+AGG | - | chr1_4:5137880-5137899 | None:intergenic | 15.0% |
| !!! | AATCATCAGTTTTAAATAAA+AGG | - | chr1_4:5138330-5138349 | None:intergenic | 15.0% |
| !! | CAAAAATTACTTAAAGATAA+GGG | - | chr1_4:5138560-5138579 | None:intergenic | 15.0% |
| !! | ACAAAAATTACTTAAAGATA+AGG | - | chr1_4:5138561-5138580 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTCAACATGGT+AGG | - | chr1_4:5136360-5136379 | None:intergenic | 20.0% |
| !! | ACAAACAAAATTTAAAAGGT+GGG | - | chr1_4:5136474-5136493 | None:intergenic | 20.0% |
| !! | AACAAACAAAATTTAAAAGG+TGG | - | chr1_4:5136475-5136494 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATAATTAG+CGG | + | chr1_4:5136985-5137004 | Msa0145450:intron | 20.0% |
| !! | AATAATTATGTTTAGCTGTT+AGG | + | chr1_4:5137196-5137215 | Msa0145450:intron | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | - | chr1_4:5137315-5137334 | None:intergenic | 20.0% |
| !!! | TTTGAAGTTTTAATCTTTGA+TGG | + | chr1_4:5137513-5137532 | Msa0145450:CDS | 20.0% |
| !! | ATTAATACTAGTAAAAGGAA+GGG | - | chr1_4:5138099-5138118 | None:intergenic | 20.0% |
| !! | TATTAATACTAGTAAAAGGA+AGG | - | chr1_4:5138100-5138119 | None:intergenic | 20.0% |
| !! | AGAGAAATAAATGTTAGTTA+TGG | - | chr1_4:5138138-5138157 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | - | chr1_4:5138437-5138456 | None:intergenic | 20.0% |
| !! | GTAAATGAAGAATAACAAAA+GGG | - | chr1_4:5138509-5138528 | None:intergenic | 20.0% |
| !! | AGAGATAAAACAACATAATT+GGG | - | chr1_4:5138534-5138553 | None:intergenic | 20.0% |
| !! | CGTGATAATAACATTAAATT+TGG | + | chr1_4:5138836-5138855 | Msa0145450:CDS | 20.0% |
| !! | TACAAGTTGTTGTTGAAAAT+CGG | - | chr1_4:5136313-5136332 | None:intergenic | 25.0% |
| !!! | AAAGTTTTCATTTTTTGCCA+TGG | + | chr1_4:5136561-5136580 | Msa0145450:intron | 25.0% |
| !! | AAATTGTTTAAGGTTCTGTT+TGG | + | chr1_4:5136710-5136729 | Msa0145450:intron | 25.0% |
| !! | AATTGTTTAAGGTTCTGTTT+GGG | + | chr1_4:5136711-5136730 | Msa0145450:intron | 25.0% |
| ! | TACAGTGTAATTATATGTGT+CGG | - | chr1_4:5136960-5136979 | None:intergenic | 25.0% |
| ! | TGAGATTAAAACATACATTG+AGG | - | chr1_4:5137259-5137278 | None:intergenic | 25.0% |
| !!! | ATGTATGTTTTAATCTCAGA+TGG | + | chr1_4:5137261-5137280 | Msa0145450:intron | 25.0% |
| !!! | TCTTATTTTGTTGGAAAATG+TGG | + | chr1_4:5137561-5137580 | Msa0145450:CDS | 25.0% |
| !!! | AATCAATACTACTTTTGATG+CGG | + | chr1_4:5137644-5137663 | Msa0145450:CDS | 25.0% |
| ! | ACAAGCGTAAATTTATTAAC+AGG | - | chr1_4:5137771-5137790 | None:intergenic | 25.0% |
| !! | TAAGCTCTGACATAAATATA+AGG | - | chr1_4:5138306-5138325 | None:intergenic | 25.0% |
| ! | GGTAAATGAAGAATAACAAA+AGG | - | chr1_4:5138510-5138529 | None:intergenic | 25.0% |
| ! | GAGAGATAAAACAACATAAT+TGG | - | chr1_4:5138535-5138554 | None:intergenic | 25.0% |
| ! | AATGTTATTATCACGAACAA+AGG | - | chr1_4:5138831-5138850 | None:intergenic | 25.0% |
| !! | ACAGAAATCAATTTTCAATG+AGG | + | chr1_4:5139014-5139033 | Msa0145450:three_prime_UTR | 25.0% |
| ! | AAAGGTACAAAGCTAAAGTA+GGG | - | chr1_4:5136162-5136181 | None:intergenic | 30.0% |
| TGAAATGGATGAACTGAAAA+TGG | - | chr1_4:5136269-5136288 | None:intergenic | 30.0% | |
| TATGAAGAAATTGGGTGAAA+TGG | - | chr1_4:5136284-5136303 | None:intergenic | 30.0% | |
| CTAATATGAACACTTCAGAA+GGG | - | chr1_4:5136388-5136407 | None:intergenic | 30.0% | |
| ! | GAAGTGTTCATATTAGGATT+TGG | + | chr1_4:5136392-5136411 | Msa0145450:intron | 30.0% |
| TGGGCAAGTTAAAATATTCA+AGG | - | chr1_4:5136455-5136474 | None:intergenic | 30.0% | |
| ATTTACACAGATAGTGTTTG+CGG | - | chr1_4:5136809-5136828 | None:intergenic | 30.0% | |
| CATTAATGACCTATGAAGTA+CGG | + | chr1_4:5136872-5136891 | Msa0145450:intron | 30.0% | |
| ACTATATTACAACTGTGTGA+GGG | + | chr1_4:5137061-5137080 | Msa0145450:intron | 30.0% | |
| AATTTGAACTTTGTACCTTG+AGG | + | chr1_4:5137084-5137103 | Msa0145450:intron | 30.0% | |
| ACATGATTTACATACACTTG+AGG | - | chr1_4:5137143-5137162 | None:intergenic | 30.0% | |
| GATACTGTTTACTTCACAAA+CGG | + | chr1_4:5137414-5137433 | Msa0145450:CDS | 30.0% | |
| ! | TTCCTTTTCTTCAAGTACAA+TGG | + | chr1_4:5137480-5137499 | Msa0145450:CDS | 30.0% |
| !! | ATCAATACTACTTTTGATGC+GGG | + | chr1_4:5137645-5137664 | Msa0145450:CDS | 30.0% |
| ! | GATCCTTTTACCAGTTAATT+GGG | - | chr1_4:5137742-5137761 | None:intergenic | 30.0% |
| ! | TGATCCTTTTACCAGTTAAT+TGG | - | chr1_4:5137743-5137762 | None:intergenic | 30.0% |
| AATAAATTTACGCTTGTCCT+CGG | + | chr1_4:5137774-5137793 | Msa0145450:intron | 30.0% | |
| ! | CTTTGCTCTGACTTTTAAAT+GGG | - | chr1_4:5137987-5138006 | None:intergenic | 30.0% |
| AATGAAGGGAAAGGTTAAAA+TGG | - | chr1_4:5138196-5138215 | None:intergenic | 30.0% | |
| AAAAGAGGAGGTAAATGATT+GGG | - | chr1_4:5138422-5138441 | None:intergenic | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | - | chr1_4:5138434-5138453 | None:intergenic | 30.0% | |
| TATCAATGTTTCACGTACTA+TGG | + | chr1_4:5138474-5138493 | Msa0145450:CDS | 30.0% | |
| GATAAAACAACATAATTGGG+AGG | - | chr1_4:5138531-5138550 | None:intergenic | 30.0% | |
| AAACCAACACATATGCTAAA+CGG | + | chr1_4:5138771-5138790 | Msa0145450:CDS | 30.0% | |
| TGATGCAAGTTCATATATCT+GGG | + | chr1_4:5138894-5138913 | Msa0145450:CDS | 30.0% | |
| ! | TGATGATGATACAGCTAATT+GGG | - | chr1_4:5139111-5139130 | None:intergenic | 30.0% |
| ! | CAAAGGTACAAAGCTAAAGT+AGG | - | chr1_4:5136163-5136182 | None:intergenic | 35.0% |
| ! | AAGTTGTTGTTGAAAATCGG+TGG | - | chr1_4:5136310-5136329 | None:intergenic | 35.0% |
| CCTAATATGAACACTTCAGA+AGG | - | chr1_4:5136389-5136408 | None:intergenic | 35.0% | |
| !! | CCTTCTGAAGTGTTCATATT+AGG | + | chr1_4:5136386-5136405 | Msa0145450:intron | 35.0% |
| ! | GCTGTTCATTATTCTTTTCC+TGG | + | chr1_4:5136781-5136800 | Msa0145450:intron | 35.0% |
| !! | TTATATGTGTCGGTGTCTTT+TGG | - | chr1_4:5136950-5136969 | None:intergenic | 35.0% |
| TCTCAAATAATTAGCGGTGT+TGG | + | chr1_4:5136991-5137010 | Msa0145450:intron | 35.0% | |
| ATAGTCATGACTATGAAGCA+CGG | - | chr1_4:5137046-5137065 | None:intergenic | 35.0% | |
| GACTATATTACAACTGTGTG+AGG | + | chr1_4:5137060-5137079 | Msa0145450:intron | 35.0% | |
| !!! | AAGGCAGCTTCTTATTTTGT+TGG | + | chr1_4:5137552-5137571 | Msa0145450:CDS | 35.0% |
| ! | CTTTTACCAGTTAATTGGGA+GGG | - | chr1_4:5137738-5137757 | None:intergenic | 35.0% |
| !! | TTATGAGAAGTAGCTGCTTT+TGG | - | chr1_4:5137804-5137823 | None:intergenic | 35.0% |
| ! | TCATAAGAGAGCACATGATT+TGG | + | chr1_4:5137818-5137837 | Msa0145450:intron | 35.0% |
| ! | GCTTTGCTCTGACTTTTAAA+TGG | - | chr1_4:5137988-5138007 | None:intergenic | 35.0% |
| TAAAAGGAAGGGAAAGACTT+AGG | - | chr1_4:5138088-5138107 | None:intergenic | 35.0% | |
| TTTAACCTTTCCCTTCATTC+TGG | + | chr1_4:5138197-5138216 | Msa0145450:intron | 35.0% | |
| TTAACCTTTCCCTTCATTCT+GGG | + | chr1_4:5138198-5138217 | Msa0145450:intron | 35.0% | |
| !!! | TTTTTGAGACCCAGAATGAA+GGG | - | chr1_4:5138210-5138229 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGACCCAGAATGA+AGG | - | chr1_4:5138211-5138230 | None:intergenic | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | - | chr1_4:5138258-5138277 | None:intergenic | 35.0% |
| AACTGTTCAATTTCACACAG+AGG | + | chr1_4:5138351-5138370 | Msa0145450:intron | 35.0% | |
| GAAAAGAGGAGGTAAATGAT+TGG | - | chr1_4:5138423-5138442 | None:intergenic | 35.0% | |
| ! | TAACTTCTGTTTTGCAGTCA+GGG | - | chr1_4:5138682-5138701 | None:intergenic | 35.0% |
| AACTCTATCCCATATGCTAA+AGG | + | chr1_4:5138737-5138756 | Msa0145450:CDS | 35.0% | |
| ACTCTATCCCATATGCTAAA+GGG | + | chr1_4:5138738-5138757 | Msa0145450:CDS | 35.0% | |
| GTGATGCAAGTTCATATATC+TGG | + | chr1_4:5138893-5138912 | Msa0145450:CDS | 35.0% | |
| GATGCAAGTTCATATATCTG+GGG | + | chr1_4:5138895-5138914 | Msa0145450:CDS | 35.0% | |
| ! | GTGATGATGATACAGCTAAT+TGG | - | chr1_4:5139112-5139131 | None:intergenic | 35.0% |
| ! | CTCTCTGCTTCTCTTTGAAA+TGG | + | chr1_4:5136203-5136222 | Msa0145450:exon | 40.0% |
| !! | CTGCTTCTCTTTGAAATGGT+AGG | + | chr1_4:5136207-5136226 | Msa0145450:exon | 40.0% |
| AATCTCTTCCTCCCAAGATT+TGG | - | chr1_4:5136238-5136257 | None:intergenic | 40.0% | |
| !! | GGTGGTGCTATGAAGAAATT+GGG | - | chr1_4:5136292-5136311 | None:intergenic | 40.0% |
| TATGAAGTACGGACACTTCT+CGG | + | chr1_4:5136883-5136902 | Msa0145450:intron | 40.0% | |
| !! | GACTTAGCTTTGTAACCTCA+AGG | - | chr1_4:5137102-5137121 | None:intergenic | 40.0% |
| !! | GTGAAGAGCGTAACAGATTT+TGG | - | chr1_4:5137237-5137256 | None:intergenic | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | - | chr1_4:5137351-5137370 | None:intergenic | 40.0% |
| CCAGAAAATGTGACCCTTAA+AGG | + | chr1_4:5137348-5137367 | Msa0145450:CDS | 40.0% | |
| AACTCCACTAGGACCTTTAA+GGG | - | chr1_4:5137364-5137383 | None:intergenic | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | - | chr1_4:5137375-5137394 | None:intergenic | 40.0% | |
| CTGTTTACTTCACAAACGGT+TGG | + | chr1_4:5137418-5137437 | Msa0145450:CDS | 40.0% | |
| CGCCATTGTACTTGAAGAAA+AGG | - | chr1_4:5137485-5137504 | None:intergenic | 40.0% | |
| TGGACTTAGTTTCTGTGAGA+AGG | + | chr1_4:5137533-5137552 | Msa0145450:CDS | 40.0% | |
| ! | CCTTTTACCAGTTAATTGGG+AGG | - | chr1_4:5137739-5137758 | None:intergenic | 40.0% |
| CCTCCCAATTAACTGGTAAA+AGG | + | chr1_4:5137736-5137755 | Msa0145450:intron | 40.0% | |
| ! | TAAGAGAGCACATGATTTGG+TGG | + | chr1_4:5137821-5137840 | Msa0145450:intron | 40.0% |
| ACCTGAGTGTTCTTTGTTAC+AGG | - | chr1_4:5137847-5137866 | None:intergenic | 40.0% | |
| ! | AGTCAGAGCAAAGCTTTGTA+TGG | + | chr1_4:5137994-5138013 | Msa0145450:intron | 40.0% |
| AAGGGAAAGACTTAGGACTT+TGG | - | chr1_4:5138081-5138100 | None:intergenic | 40.0% | |
| TAAAATGGAGAGGAGCTTGT+TGG | - | chr1_4:5138181-5138200 | None:intergenic | 40.0% | |
| AGGGAAAGGTTAAAATGGAG+AGG | - | chr1_4:5138191-5138210 | None:intergenic | 40.0% | |
| ! | CAGACAAGTATCAGTTTGCT+AGG | - | chr1_4:5138259-5138278 | None:intergenic | 40.0% |
| ACGTGAAACATTGATATCGC+CGG | - | chr1_4:5138470-5138489 | None:intergenic | 40.0% | |
| ATCTGCTTGACAAACTGATC+TGG | + | chr1_4:5138589-5138608 | Msa0145450:intron | 40.0% | |
| TGTGCAGCAGAGAAATGATA+TGG | - | chr1_4:5138656-5138675 | None:intergenic | 40.0% | |
| ! | GTAACTTCTGTTTTGCAGTC+AGG | - | chr1_4:5138683-5138702 | None:intergenic | 40.0% |
| CTGTTCTCCCTTTAGCATAT+GGG | - | chr1_4:5138748-5138767 | None:intergenic | 40.0% | |
| ACTGTTCTCCCTTTAGCATA+TGG | - | chr1_4:5138749-5138768 | None:intergenic | 40.0% | |
| TCTCCGTTTAGCATATGTGT+TGG | - | chr1_4:5138777-5138796 | None:intergenic | 40.0% | |
| ! | CAAGTTCATATATCTGGGGT+TGG | + | chr1_4:5138899-5138918 | Msa0145450:CDS | 40.0% |
| ! | TCATATATCTGGGGTTGGAA+AGG | + | chr1_4:5138904-5138923 | Msa0145450:CDS | 40.0% |
| AAGGTCTTGACCAGCAAAAT+GGG | + | chr1_4:5138927-5138946 | Msa0145450:CDS | 40.0% | |
| TTGACCAGCAAAATGGGAAT+GGG | + | chr1_4:5138933-5138952 | Msa0145450:CDS | 40.0% | |
| CAAGAACGTTAGCAGGTAAA+CGG | - | chr1_4:5138986-5139005 | None:intergenic | 40.0% | |
| TCACAAACAAGAACGTTAGC+AGG | - | chr1_4:5138993-5139012 | None:intergenic | 40.0% | |
| CAGTTCACGAGGAAGATGAA+AGG | - | chr1_4:5136124-5136143 | None:intergenic | 45.0% | |
| TCTTCCTCGTGAACTGTTGA+AGG | + | chr1_4:5136128-5136147 | Msa0145450:five_prime_UTR | 45.0% | |
| CTTCCTCGTGAACTGTTGAA+GGG | + | chr1_4:5136129-5136148 | Msa0145450:five_prime_UTR | 45.0% | |
| AAACCCTTCAACAGTTCACG+AGG | - | chr1_4:5136135-5136154 | None:intergenic | 45.0% | |
| !! | TGGTAGGAAGCACCAAATCT+TGG | + | chr1_4:5136223-5136242 | Msa0145450:CDS | 45.0% |
| !! | GGTAGGAAGCACCAAATCTT+GGG | + | chr1_4:5136224-5136243 | Msa0145450:CDS | 45.0% |
| CTTGGGAGGAAGAGATTTAC+TGG | + | chr1_4:5136241-5136260 | Msa0145450:CDS | 45.0% | |
| !! | CGGTGGTGCTATGAAGAAAT+TGG | - | chr1_4:5136293-5136312 | None:intergenic | 45.0% |
| GTTCTGTTTGGGAGTTTGCA+AGG | + | chr1_4:5136722-5136741 | Msa0145450:intron | 45.0% | |
| TGTTTGGGAGTTTGCAAGGA+GGG | + | chr1_4:5136726-5136745 | Msa0145450:intron | 45.0% | |
| !! | GAGAAGTGTCCGTACTTCAT+AGG | - | chr1_4:5136884-5136903 | None:intergenic | 45.0% |
| TGACTATGAAGCACGGACAT+CGG | - | chr1_4:5137039-5137058 | None:intergenic | 45.0% | |
| CAACTCCACTAGGACCTTTA+AGG | - | chr1_4:5137365-5137384 | None:intergenic | 45.0% | |
| GTCATGCTCAAACCGAACAA+GGG | + | chr1_4:5137583-5137602 | Msa0145450:CDS | 45.0% | |
| TCATGCTCAAACCGAACAAG+GGG | + | chr1_4:5137584-5137603 | Msa0145450:CDS | 45.0% | |
| ! | CACAGACTTGTTTGTGTCCT+TGG | - | chr1_4:5137619-5137638 | None:intergenic | 45.0% |
| CAAGGACACAAACAAGTCTG+TGG | + | chr1_4:5137617-5137636 | Msa0145450:CDS | 45.0% | |
| !! | TACTACTTTTGATGCGGGTG+TGG | + | chr1_4:5137650-5137669 | Msa0145450:CDS | 45.0% |
| !!! | TAGCTGCTTTTGGTAATCCG+AGG | - | chr1_4:5137794-5137813 | None:intergenic | 45.0% |
| GCCTGTAACAAAGAACACTC+AGG | + | chr1_4:5137843-5137862 | Msa0145450:intron | 45.0% | |
| AATACTCTGTCTCCAACCCA+AGG | + | chr1_4:5137915-5137934 | Msa0145450:intron | 45.0% | |
| ! | TGGCAGGTTAGTTAGAGAGA+TGG | - | chr1_4:5138161-5138180 | None:intergenic | 45.0% |
| CATCCATCGTGCATAGAAGT+GGG | + | chr1_4:5138374-5138393 | Msa0145450:CDS | 45.0% | |
| GCTTGACAAACTGATCTGGT+TGG | + | chr1_4:5138593-5138612 | Msa0145450:intron | 45.0% | |
| GTTACGCTTCGCAATTCAAG+AGG | + | chr1_4:5138698-5138717 | Msa0145450:CDS | 45.0% | |
| GCAATTCAAGAGGCGAATGT+TGG | + | chr1_4:5138708-5138727 | Msa0145450:CDS | 45.0% | |
| ! | AGACCAGTTCACACCTTTTG+TGG | + | chr1_4:5138794-5138813 | Msa0145450:CDS | 45.0% |
| ! | GACCAGTTCACACCTTTTGT+GGG | + | chr1_4:5138795-5138814 | Msa0145450:CDS | 45.0% |
| ! | ACCAGTTCACACCTTTTGTG+GGG | + | chr1_4:5138796-5138815 | Msa0145450:CDS | 45.0% |
| ! | ATATCTGGGGTTGGAAAGGA+AGG | + | chr1_4:5138908-5138927 | Msa0145450:CDS | 45.0% |
| GAAGGTCTTGACCAGCAAAA+TGG | + | chr1_4:5138926-5138945 | Msa0145450:CDS | 45.0% | |
| CTTGACCAGCAAAATGGGAA+TGG | + | chr1_4:5138932-5138951 | Msa0145450:CDS | 45.0% | |
| ! | GTTTCCCATTCCCATTTTGC+TGG | - | chr1_4:5138940-5138959 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAATGAAAA+AGG | - | chr1_4:5137883-5137902 | None:intergenic | 5.0% |
| !!! | TTAAATATTTTAACAAAATA+TGG | - | chr1_4:5138445-5138464 | None:intergenic | 5.0% |
| GAGAGAGGGAAAGGGTTCAA+AGG | - | chr1_4:5136180-5136199 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGGGAAA+GGG | - | chr1_4:5136188-5136207 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGGGAA+AGG | - | chr1_4:5136189-5136208 | None:intergenic | 50.0% | |
| GAAGCAGAGAGAGAGAGAGA+GGG | - | chr1_4:5136194-5136213 | None:intergenic | 50.0% | |
| AGAAGCAGAGAGAGAGAGAG+AGG | - | chr1_4:5136195-5136214 | None:intergenic | 50.0% | |
| !! | AGGAAGCACCAAATCTTGGG+AGG | + | chr1_4:5136227-5136246 | Msa0145450:CDS | 50.0% |
| CTGTTTGGGAGTTTGCAAGG+AGG | + | chr1_4:5136725-5136744 | Msa0145450:intron | 50.0% | |
| GTTTGGGAGTTTGCAAGGAG+GGG | + | chr1_4:5136727-5136746 | Msa0145450:intron | 50.0% | |
| GAGTTTGCAAGGAGGGGATA+AGG | + | chr1_4:5136733-5136752 | Msa0145450:intron | 50.0% | |
| CAGATAGTGTTTGCGGAACC+AGG | - | chr1_4:5136802-5136821 | None:intergenic | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | + | chr1_4:5137357-5137376 | Msa0145450:CDS | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | + | chr1_4:5137367-5137386 | Msa0145450:CDS | 50.0% | |
| GGTCATGCTCAAACCGAACA+AGG | + | chr1_4:5137582-5137601 | Msa0145450:CDS | 50.0% | |
| CATGCTCAAACCGAACAAGG+GGG | + | chr1_4:5137585-5137604 | Msa0145450:CDS | 50.0% | |
| !! | AACCGAACAAGGGGGTATCA+AGG | + | chr1_4:5137593-5137612 | Msa0145450:CDS | 50.0% |
| ATCAGCCATGCACTTCTCAG+GGG | - | chr1_4:5137685-5137704 | None:intergenic | 50.0% | |
| CATCAGCCATGCACTTCTCA+GGG | - | chr1_4:5137686-5137705 | None:intergenic | 50.0% | |
| !! | GGATTAGTCAGTCCTTGGGT+TGG | - | chr1_4:5137930-5137949 | None:intergenic | 50.0% |
| !! | CCTCGGATTAGTCAGTCCTT+GGG | - | chr1_4:5137934-5137953 | None:intergenic | 50.0% |
| CCAAGGACTGACTAATCCGA+GGG | + | chr1_4:5137932-5137951 | Msa0145450:intron | 50.0% | |
| CAAGGACTGACTAATCCGAG+GGG | + | chr1_4:5137933-5137952 | Msa0145450:intron | 50.0% | |
| !! | ATGGACTAGCCCACCAAAGT+TGG | + | chr1_4:5138013-5138032 | Msa0145450:intron | 50.0% |
| ATCAAACCCGAGACCTTGAG+AGG | + | chr1_4:5138047-5138066 | Msa0145450:intron | 50.0% | |
| ! | TTTGGAGTGTGCTCCTCTCA+AGG | - | chr1_4:5138063-5138082 | None:intergenic | 50.0% |
| GAGACCCAGAATGAAGGGAA+AGG | - | chr1_4:5138205-5138224 | None:intergenic | 50.0% | |
| GCATCCATCGTGCATAGAAG+TGG | + | chr1_4:5138373-5138392 | Msa0145450:CDS | 50.0% | |
| CTTCCCACTTCTATGCACGA+TGG | - | chr1_4:5138380-5138399 | None:intergenic | 50.0% | |
| CATCGTGCATAGAAGTGGGA+AGG | + | chr1_4:5138378-5138397 | Msa0145450:CDS | 50.0% | |
| ! | CCAGTTCACACCTTTTGTGG+GGG | + | chr1_4:5138797-5138816 | Msa0145450:CDS | 50.0% |
| ! | TTCACACCTTTTGTGGGGGT+TGG | + | chr1_4:5138801-5138820 | Msa0145450:CDS | 50.0% |
| ! | TCACACCTTTTGTGGGGGTT+GGG | + | chr1_4:5138802-5138821 | Msa0145450:CDS | 50.0% |
| !! | GTGTCGGTGTCTTTTGGCGT+CGG | - | chr1_4:5136944-5136963 | None:intergenic | 55.0% |
| ! | CACTTGAGGTGCTAGCTCAG+TGG | - | chr1_4:5137129-5137148 | None:intergenic | 55.0% |
| GGCCTTGATACCCCCTTGTT+CGG | - | chr1_4:5137598-5137617 | None:intergenic | 55.0% | |
| !! | ACAAGGGGGTATCAAGGCCA+AGG | + | chr1_4:5137599-5137618 | Msa0145450:CDS | 55.0% |
| ! | TGCTTCCCCTGAGAAGTGCA+TGG | + | chr1_4:5137677-5137696 | Msa0145450:CDS | 55.0% |
| GCATCAGCCATGCACTTCTC+AGG | - | chr1_4:5137687-5137706 | None:intergenic | 55.0% | |
| ATTGGGAGGGAGCTGCAACA+GGG | - | chr1_4:5137725-5137744 | None:intergenic | 55.0% | |
| AATTGGGAGGGAGCTGCAAC+AGG | - | chr1_4:5137726-5137745 | None:intergenic | 55.0% | |
| GCAGCTCCCTCCCAATTAAC+TGG | + | chr1_4:5137729-5137748 | Msa0145450:CDS | 55.0% | |
| CCCAAGGACTGACTAATCCG+AGG | + | chr1_4:5137931-5137950 | Msa0145450:intron | 55.0% | |
| !! | CCCTCGGATTAGTCAGTCCT+TGG | - | chr1_4:5137935-5137954 | None:intergenic | 55.0% |
| TTAAATGGGACCCCCGCAAG+TGG | - | chr1_4:5137973-5137992 | None:intergenic | 55.0% | |
| !! | ATTCCCCTCGGTGCCAACTT+TGG | - | chr1_4:5138029-5138048 | None:intergenic | 55.0% |
| GTCTCGGGTTTGATTCCCCT+CGG | - | chr1_4:5138041-5138060 | None:intergenic | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+GGG | - | chr1_4:5138056-5138075 | None:intergenic | 55.0% | |
| GTGTGCTCCTCTCAAGGTCT+CGG | - | chr1_4:5138057-5138076 | None:intergenic | 55.0% | |
| !! | ATGGAGAGGAGCTTGTTGGC+AGG | - | chr1_4:5138177-5138196 | None:intergenic | 55.0% |
| ! | CCCCCACAAAAGGTGTGAAC+TGG | - | chr1_4:5138800-5138819 | None:intergenic | 55.0% |
| ! | GAGGTGCTAGCTCAGTGGCA+AGG | - | chr1_4:5137124-5137143 | None:intergenic | 60.0% |
| TTGGGAGGGAGCTGCAACAG+GGG | - | chr1_4:5137724-5137743 | None:intergenic | 60.0% | |
| CCAATCCCGCAGTCCACTTG+CGG | + | chr1_4:5137957-5137976 | Msa0145450:intron | 60.0% | |
| CAATCCCGCAGTCCACTTGC+GGG | + | chr1_4:5137958-5137977 | Msa0145450:intron | 60.0% | |
| AATCCCGCAGTCCACTTGCG+GGG | + | chr1_4:5137959-5137978 | Msa0145450:intron | 60.0% | |
| !! | CCCTCGGTGCCAACTTTGGT+GGG | - | chr1_4:5138025-5138044 | None:intergenic | 60.0% |
| ! | CCCACCAAAGTTGGCACCGA+GGG | + | chr1_4:5138022-5138041 | Msa0145450:intron | 60.0% |
| ! | CCACCAAAGTTGGCACCGAG+GGG | + | chr1_4:5138023-5138042 | Msa0145450:intron | 60.0% |
| ! | CACCTTTTGTGGGGGTTGGG+TGG | + | chr1_4:5138805-5138824 | Msa0145450:CDS | 60.0% |
| GACTGCGGGATTGGACCCCT+CGG | - | chr1_4:5137951-5137970 | None:intergenic | 65.0% | |
| !! | CCGCAAGTGGACTGCGGGAT+TGG | - | chr1_4:5137960-5137979 | None:intergenic | 65.0% |
| ATCCCGCAGTCCACTTGCGG+GGG | + | chr1_4:5137960-5137979 | Msa0145450:intron | 65.0% | |
| GCCCACCAAAGTTGGCACCG+AGG | + | chr1_4:5138021-5138040 | Msa0145450:intron | 65.0% | |
| !! | CCCCTCGGTGCCAACTTTGG+TGG | - | chr1_4:5138026-5138045 | None:intergenic | 65.0% |
| GGCCACCCAACCCCCACAAA+AGG | - | chr1_4:5138810-5138829 | None:intergenic | 65.0% | |
| GGAGGGAGCTGCAACAGGGG+TGG | - | chr1_4:5137721-5137740 | None:intergenic | 70.0% | |
| !! | GACCCCCGCAAGTGGACTGC+GGG | - | chr1_4:5137965-5137984 | None:intergenic | 70.0% |
| !! | GGACCCCCGCAAGTGGACTG+CGG | - | chr1_4:5137966-5137985 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5136093 | 5139188 | 5136093 | ID=Msa0145450;Name=Msa0145450 |
| chr1_4 | mRNA | 5136093 | 5139188 | 5136093 | ID=Msa0145450-mRNA-1;Parent=Msa0145450;Name=Msa0145450-mRNA-1;_AED=0.40;_eAED=0.40;_QI=129|0.66|0.75|1|1|1|4|215|334 |
| chr1_4 | exon | 5136093 | 5136329 | 5136093 | ID=Msa0145450-mRNA-1:exon:2122;Parent=Msa0145450-mRNA-1 |
| chr1_4 | exon | 5137306 | 5137750 | 5137306 | ID=Msa0145450-mRNA-1:exon:2123;Parent=Msa0145450-mRNA-1 |
| chr1_4 | exon | 5138371 | 5138495 | 5138371 | ID=Msa0145450-mRNA-1:exon:2124;Parent=Msa0145450-mRNA-1 |
| chr1_4 | exon | 5138647 | 5139188 | 5138647 | ID=Msa0145450-mRNA-1:exon:2125;Parent=Msa0145450-mRNA-1 |
| chr1_4 | five_prime_UTR | 5136093 | 5136221 | 5136093 | ID=Msa0145450-mRNA-1:five_prime_utr;Parent=Msa0145450-mRNA-1 |
| chr1_4 | CDS | 5136222 | 5136329 | 5136222 | ID=Msa0145450-mRNA-1:cds;Parent=Msa0145450-mRNA-1 |
| chr1_4 | CDS | 5137306 | 5137750 | 5137306 | ID=Msa0145450-mRNA-1:cds;Parent=Msa0145450-mRNA-1 |
| chr1_4 | CDS | 5138371 | 5138495 | 5138371 | ID=Msa0145450-mRNA-1:cds;Parent=Msa0145450-mRNA-1 |
| chr1_4 | CDS | 5138647 | 5138973 | 5138647 | ID=Msa0145450-mRNA-1:cds;Parent=Msa0145450-mRNA-1 |
| chr1_4 | three_prime_UTR | 5138974 | 5139188 | 5138974 | ID=Msa0145450-mRNA-1:three_prime_utr;Parent=Msa0145450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
