Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102030 | A0A072VEK2 | 85.965 | 57 | 8 | 0 | 3 | 59 | 7 | 63 | 4.10e-25 | 98.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102020 | Msa0102030 | 0.819347 | 1.218081e-52 | -8.615850e-47 |
| Msa0102030 | Msa1043730 | 0.948492 | 8.479425e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 7 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAAGAAGTTAAAATCTC+TGG | 0.431243 | 1_3:-8727771 | Msa0102030:CDS |
| CAGATTCAGTGGAATCTGTA+AGG | 0.450140 | 1_3:+8727790 | Msa0102020:intron |
| TTTAACTTCTTCAGATTCAG+TGG | 0.515006 | 1_3:+8727779 | Msa0102020:intron |
| TGCTCGAAGTCTAAGTGAAG+AGG | 0.569580 | 1_3:+8727830 | Msa0102020:intron |
| GCAACCTTTGAAAACAGTGT+AGG | 0.611405 | 1_3:+8727857 | Msa0102020:intron |
| TACGTGTAAATAAAGATGAG+AGG | 0.628118 | 1_3:-8729475 | None:intergenic |
| TGTATGCAGCAAGAAGTGTG+AGG | 0.814348 | 1_3:-8727748 | Msa0102030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAACATTAATTTTTCTTT+AGG | - | chr1_3:8728807-8728826 | Msa0102030:intron | 10.0% |
| !!! | AATAACATTAATTTTTCTTT+AGG | - | chr1_3:8728807-8728826 | Msa0102030:intron | 10.0% |
| !! | TAAATTTAAACATCATGAAT+TGG | + | chr1_3:8727784-8727803 | Msa0102020:intron | 15.0% |
| !!! | ATTGCATATTTTATTTTGTA+TGG | - | chr1_3:8727900-8727919 | Msa0102030:intron | 15.0% |
| !!! | TTGCATATTTTATTTTGTAT+GGG | - | chr1_3:8727901-8727920 | Msa0102030:intron | 15.0% |
| !!! | TTATATAAGCAATTTTTGTT+AGG | - | chr1_3:8728518-8728537 | Msa0102030:intron | 15.0% |
| !! | TAAATTTAAACATCATGAAT+TGG | + | chr1_3:8727784-8727803 | Msa0102020:intron | 15.0% |
| !!! | ATTGCATATTTTATTTTGTA+TGG | - | chr1_3:8727900-8727919 | Msa0102030:intron | 15.0% |
| !!! | TTGCATATTTTATTTTGTAT+GGG | - | chr1_3:8727901-8727920 | Msa0102030:intron | 15.0% |
| !!! | TTATATAAGCAATTTTTGTT+AGG | - | chr1_3:8728518-8728537 | Msa0102030:intron | 15.0% |
| !!! | ATTTAATCATAAACTCCTTT+TGG | - | chr1_3:8727799-8727818 | Msa0102030:CDS | 20.0% |
| !! | GTAGTACAAAATATATGTAT+AGG | - | chr1_3:8727840-8727859 | Msa0102030:CDS | 20.0% |
| !! | AAATATGCAATGAAATCATT+TGG | + | chr1_3:8727891-8727910 | Msa0102020:intron | 20.0% |
| !! | TCAAATACTAAAATGTACTA+GGG | + | chr1_3:8728359-8728378 | None:intergenic | 20.0% |
| !!! | ACTAGCTTTATTAACAATAT+TGG | - | chr1_3:8728378-8728397 | Msa0102030:intron | 20.0% |
| !! | TTAAAACTTCTTTCTGATTT+AGG | + | chr1_3:8728474-8728493 | None:intergenic | 20.0% |
| !!! | TAGGAAATCATTTAAAACAA+TGG | - | chr1_3:8728826-8728845 | Msa0102030:intron | 20.0% |
| !! | TTTATTATGCTATATTACGT+CGG | - | chr1_3:8729060-8729079 | Msa0102030:intron | 20.0% |
| !!! | ATTTAATCATAAACTCCTTT+TGG | - | chr1_3:8727799-8727818 | Msa0102030:CDS | 20.0% |
| !! | GTAGTACAAAATATATGTAT+AGG | - | chr1_3:8727840-8727859 | Msa0102030:CDS | 20.0% |
| !! | AAATATGCAATGAAATCATT+TGG | + | chr1_3:8727891-8727910 | Msa0102020:intron | 20.0% |
| !! | TCAAATACTAAAATGTACTA+GGG | + | chr1_3:8728359-8728378 | None:intergenic | 20.0% |
| !!! | ACTAGCTTTATTAACAATAT+TGG | - | chr1_3:8728378-8728397 | Msa0102030:intron | 20.0% |
| !! | TTAAAACTTCTTTCTGATTT+AGG | + | chr1_3:8728474-8728493 | None:intergenic | 20.0% |
| !!! | TAGGAAATCATTTAAAACAA+TGG | - | chr1_3:8728826-8728845 | Msa0102030:intron | 20.0% |
| !! | TTTATTATGCTATATTACGT+CGG | - | chr1_3:8729060-8729079 | Msa0102030:intron | 20.0% |
| ! | ATTTAAACATCATGAATTGG+TGG | + | chr1_3:8727781-8727800 | Msa0102020:intron | 25.0% |
| ! | GATAGTTTACCATATTCAAA+TGG | + | chr1_3:8727932-8727951 | Msa0102020:intron | 25.0% |
| ! | CTTTGATATGATACATTGTA+AGG | - | chr1_3:8728182-8728201 | Msa0102030:intron | 25.0% |
| ! | CAAATACTAAAATGTACTAG+GGG | + | chr1_3:8728358-8728377 | None:intergenic | 25.0% |
| ! | GTCAAATACTAAAATGTACT+AGG | + | chr1_3:8728360-8728379 | None:intergenic | 25.0% |
| ! | GTATTATGATTATCTTACCA+TGG | + | chr1_3:8728452-8728471 | None:intergenic | 25.0% |
| !!! | AATGTTTTTTTTGATGCCTA+TGG | + | chr1_3:8728695-8728714 | None:intergenic | 25.0% |
| ! | TATCTATATGTGACAAAGAT+AGG | - | chr1_3:8728717-8728736 | Msa0102030:intron | 25.0% |
| ! | ATCTATATGTGACAAAGATA+GGG | - | chr1_3:8728718-8728737 | Msa0102030:intron | 25.0% |
| ! | ATTTAAACATCATGAATTGG+TGG | + | chr1_3:8727781-8727800 | Msa0102020:intron | 25.0% |
| ! | GATAGTTTACCATATTCAAA+TGG | + | chr1_3:8727932-8727951 | Msa0102020:intron | 25.0% |
| ! | CTTTGATATGATACATTGTA+AGG | - | chr1_3:8728182-8728201 | Msa0102030:intron | 25.0% |
| ! | CAAATACTAAAATGTACTAG+GGG | + | chr1_3:8728358-8728377 | None:intergenic | 25.0% |
| ! | GTCAAATACTAAAATGTACT+AGG | + | chr1_3:8728360-8728379 | None:intergenic | 25.0% |
| ! | GTATTATGATTATCTTACCA+TGG | + | chr1_3:8728452-8728471 | None:intergenic | 25.0% |
| !!! | AATGTTTTTTTTGATGCCTA+TGG | + | chr1_3:8728695-8728714 | None:intergenic | 25.0% |
| ! | TATCTATATGTGACAAAGAT+AGG | - | chr1_3:8728717-8728736 | Msa0102030:intron | 25.0% |
| ! | ATCTATATGTGACAAAGATA+GGG | - | chr1_3:8728718-8728737 | Msa0102030:intron | 25.0% |
| !!! | TTCACTTTTAAGCATTGACT+AGG | - | chr1_3:8728155-8728174 | Msa0102030:intron | 30.0% |
| AATACATTCATGGCACAAAA+AGG | - | chr1_3:8728211-8728230 | Msa0102030:intron | 30.0% | |
| TTCCTTTCTTTATGGTTGAA+GGG | + | chr1_3:8728261-8728280 | None:intergenic | 30.0% | |
| TTTCCTTTCTTTATGGTTGA+AGG | + | chr1_3:8728262-8728281 | None:intergenic | 30.0% | |
| !! | CCTTTTGTTTCCTTTCTTTA+TGG | + | chr1_3:8728269-8728288 | None:intergenic | 30.0% |
| CCATAAAGAAAGGAAACAAA+AGG | - | chr1_3:8728266-8728285 | Msa0102030:intron | 30.0% | |
| TCCTTTCTATTTGTGAAGAT+GGG | + | chr1_3:8728312-8728331 | None:intergenic | 30.0% | |
| TTCCTTTCTATTTGTGAAGA+TGG | + | chr1_3:8728313-8728332 | None:intergenic | 30.0% | |
| TGAAATAGATGATAGTCCTA+AGG | - | chr1_3:8728425-8728444 | Msa0102030:intron | 30.0% | |
| TTAGCTTAACTTTGAATCCT+AGG | - | chr1_3:8728849-8728868 | Msa0102030:intron | 30.0% | |
| TTAACTTTGAATCCTAGGTA+GGG | - | chr1_3:8728854-8728873 | Msa0102030:intron | 30.0% | |
| TTACTTATATTACCCTTACC+AGG | + | chr1_3:8728919-8728938 | None:intergenic | 30.0% | |
| ! | CAGTGAAAGGAATTTAAGTT+GGG | + | chr1_3:8728950-8728969 | None:intergenic | 30.0% |
| TCAGTGAAAGGAATTTAAGT+TGG | + | chr1_3:8728951-8728970 | None:intergenic | 30.0% | |
| ATCATCATCTGCAGAAAATT+TGG | - | chr1_3:8729245-8729264 | Msa0102030:intron | 30.0% | |
| ! | TTTAACTTCTTCAGATTCAG+TGG | + | chr1_3:8729427-8729446 | None:intergenic | 30.0% |
| TCTGAAGAAGTTAAAATCTC+TGG | - | chr1_3:8729432-8729451 | Msa0102030:intron | 30.0% | |
| !!! | TTCACTTTTAAGCATTGACT+AGG | - | chr1_3:8728155-8728174 | Msa0102030:intron | 30.0% |
| AATACATTCATGGCACAAAA+AGG | - | chr1_3:8728211-8728230 | Msa0102030:intron | 30.0% | |
| TTCCTTTCTTTATGGTTGAA+GGG | + | chr1_3:8728261-8728280 | None:intergenic | 30.0% | |
| TTTCCTTTCTTTATGGTTGA+AGG | + | chr1_3:8728262-8728281 | None:intergenic | 30.0% | |
| !! | CCTTTTGTTTCCTTTCTTTA+TGG | + | chr1_3:8728269-8728288 | None:intergenic | 30.0% |
| CCATAAAGAAAGGAAACAAA+AGG | - | chr1_3:8728266-8728285 | Msa0102030:intron | 30.0% | |
| TCCTTTCTATTTGTGAAGAT+GGG | + | chr1_3:8728312-8728331 | None:intergenic | 30.0% | |
| TTCCTTTCTATTTGTGAAGA+TGG | + | chr1_3:8728313-8728332 | None:intergenic | 30.0% | |
| TGAAATAGATGATAGTCCTA+AGG | - | chr1_3:8728425-8728444 | Msa0102030:intron | 30.0% | |
| TTAGCTTAACTTTGAATCCT+AGG | - | chr1_3:8728849-8728868 | Msa0102030:intron | 30.0% | |
| TTAACTTTGAATCCTAGGTA+GGG | - | chr1_3:8728854-8728873 | Msa0102030:intron | 30.0% | |
| TTACTTATATTACCCTTACC+AGG | + | chr1_3:8728919-8728938 | None:intergenic | 30.0% | |
| ! | CAGTGAAAGGAATTTAAGTT+GGG | + | chr1_3:8728950-8728969 | None:intergenic | 30.0% |
| TCAGTGAAAGGAATTTAAGT+TGG | + | chr1_3:8728951-8728970 | None:intergenic | 30.0% | |
| ATCATCATCTGCAGAAAATT+TGG | - | chr1_3:8729245-8729264 | Msa0102030:intron | 30.0% | |
| ! | TTTAACTTCTTCAGATTCAG+TGG | + | chr1_3:8729427-8729446 | None:intergenic | 30.0% |
| TCTGAAGAAGTTAAAATCTC+TGG | - | chr1_3:8729432-8729451 | Msa0102030:intron | 30.0% | |
| CAAAAAACGTGACAACCAAA+AGG | + | chr1_3:8727817-8727836 | Msa0102020:intron | 35.0% | |
| !!! | TTGGTTGTCACGTTTTTTGT+TGG | - | chr1_3:8727818-8727837 | Msa0102030:CDS | 35.0% |
| ! | AAGTTAGTCTAGTCGTGAAA+GGG | + | chr1_3:8727976-8727995 | Msa0102020:CDS | 35.0% |
| ! | GTGAAATTGGTCTCATGTAT+TGG | + | chr1_3:8728011-8728030 | Msa0102020:CDS | 35.0% |
| ACTTTGATACTGCGTGAAAT+TGG | + | chr1_3:8728024-8728043 | Msa0102020:CDS | 35.0% | |
| ! | TCACGCAGTATCAAAGTTTT+TGG | - | chr1_3:8728027-8728046 | Msa0102030:intron | 35.0% |
| AAGGTGAGTCAATACATTCA+TGG | - | chr1_3:8728201-8728220 | Msa0102030:intron | 35.0% | |
| ATCCCTTCAACCATAAAGAA+AGG | - | chr1_3:8728256-8728275 | Msa0102030:intron | 35.0% | |
| TCCCATCTTCACAAATAGAA+AGG | - | chr1_3:8728308-8728327 | Msa0102030:intron | 35.0% | |
| ATTATCTTACCATGGACCTT+AGG | + | chr1_3:8728444-8728463 | None:intergenic | 35.0% | |
| TTAAATTGCATCCCACATTC+AGG | - | chr1_3:8728657-8728676 | Msa0102030:intron | 35.0% | |
| !! | CCTTTAAAGTTCCTGAATGT+GGG | + | chr1_3:8728671-8728690 | None:intergenic | 35.0% |
| !! | ACCTTTAAAGTTCCTGAATG+TGG | + | chr1_3:8728672-8728691 | None:intergenic | 35.0% |
| !! | AACACAACAACTTTGAGACA+AGG | - | chr1_3:8728747-8728766 | Msa0102030:intron | 35.0% |
| !! | ACACAACAACTTTGAGACAA+GGG | - | chr1_3:8728748-8728767 | Msa0102030:intron | 35.0% |
| GTTGTCACGTTTAAGTCAAA+TGG | + | chr1_3:8728787-8728806 | None:intergenic | 35.0% | |
| CTTAACTTTGAATCCTAGGT+AGG | - | chr1_3:8728853-8728872 | Msa0102030:intron | 35.0% | |
| ! | CTTTGAACTTACACTTTTCC+TGG | - | chr1_3:8728898-8728917 | Msa0102030:intron | 35.0% |
| ! | AACTTACACTTTTCCTGGTA+AGG | - | chr1_3:8728903-8728922 | Msa0102030:intron | 35.0% |
| ! | ACTTACACTTTTCCTGGTAA+GGG | - | chr1_3:8728904-8728923 | Msa0102030:intron | 35.0% |
| GCTTTCTTTCAATAACCAGT+TGG | + | chr1_3:8729030-8729049 | None:intergenic | 35.0% | |
| TTCATGACAGTACACTATTC+AGG | - | chr1_3:8729288-8729307 | Msa0102030:intron | 35.0% | |
| ! | AAGTCCTACACTGTTTTCAA+AGG | - | chr1_3:8729342-8729361 | Msa0102030:intron | 35.0% |
| CAAAAAACGTGACAACCAAA+AGG | + | chr1_3:8727817-8727836 | Msa0102020:intron | 35.0% | |
| !!! | TTGGTTGTCACGTTTTTTGT+TGG | - | chr1_3:8727818-8727837 | Msa0102030:CDS | 35.0% |
| ! | AAGTTAGTCTAGTCGTGAAA+GGG | + | chr1_3:8727976-8727995 | Msa0102020:CDS | 35.0% |
| ! | GTGAAATTGGTCTCATGTAT+TGG | + | chr1_3:8728011-8728030 | Msa0102020:CDS | 35.0% |
| ACTTTGATACTGCGTGAAAT+TGG | + | chr1_3:8728024-8728043 | Msa0102020:CDS | 35.0% | |
| ! | TCACGCAGTATCAAAGTTTT+TGG | - | chr1_3:8728027-8728046 | Msa0102030:intron | 35.0% |
| AAGGTGAGTCAATACATTCA+TGG | - | chr1_3:8728201-8728220 | Msa0102030:intron | 35.0% | |
| ATCCCTTCAACCATAAAGAA+AGG | - | chr1_3:8728256-8728275 | Msa0102030:intron | 35.0% | |
| TCCCATCTTCACAAATAGAA+AGG | - | chr1_3:8728308-8728327 | Msa0102030:intron | 35.0% | |
| ATTATCTTACCATGGACCTT+AGG | + | chr1_3:8728444-8728463 | None:intergenic | 35.0% | |
| TTAAATTGCATCCCACATTC+AGG | - | chr1_3:8728657-8728676 | Msa0102030:intron | 35.0% | |
| !! | CCTTTAAAGTTCCTGAATGT+GGG | + | chr1_3:8728671-8728690 | None:intergenic | 35.0% |
| !! | ACCTTTAAAGTTCCTGAATG+TGG | + | chr1_3:8728672-8728691 | None:intergenic | 35.0% |
| !! | AACACAACAACTTTGAGACA+AGG | - | chr1_3:8728747-8728766 | Msa0102030:intron | 35.0% |
| !! | ACACAACAACTTTGAGACAA+GGG | - | chr1_3:8728748-8728767 | Msa0102030:intron | 35.0% |
| GTTGTCACGTTTAAGTCAAA+TGG | + | chr1_3:8728787-8728806 | None:intergenic | 35.0% | |
| CTTAACTTTGAATCCTAGGT+AGG | - | chr1_3:8728853-8728872 | Msa0102030:intron | 35.0% | |
| ! | CTTTGAACTTACACTTTTCC+TGG | - | chr1_3:8728898-8728917 | Msa0102030:intron | 35.0% |
| ! | AACTTACACTTTTCCTGGTA+AGG | - | chr1_3:8728903-8728922 | Msa0102030:intron | 35.0% |
| ! | ACTTACACTTTTCCTGGTAA+GGG | - | chr1_3:8728904-8728923 | Msa0102030:intron | 35.0% |
| GCTTTCTTTCAATAACCAGT+TGG | + | chr1_3:8729030-8729049 | None:intergenic | 35.0% | |
| TTCATGACAGTACACTATTC+AGG | - | chr1_3:8729288-8729307 | Msa0102030:intron | 35.0% | |
| ! | AAGTCCTACACTGTTTTCAA+AGG | - | chr1_3:8729342-8729361 | Msa0102030:intron | 35.0% |
| TGGGTGCAACCATTTGAATA+TGG | - | chr1_3:8727920-8727939 | Msa0102030:intron | 40.0% | |
| ! | CAAGTTAGTCTAGTCGTGAA+AGG | + | chr1_3:8727977-8727996 | Msa0102020:CDS | 40.0% |
| CTTTCACGACTAGACTAACT+TGG | - | chr1_3:8727975-8727994 | Msa0102030:intron | 40.0% | |
| ACATTCATGGCACAAAAAGG+TGG | - | chr1_3:8728214-8728233 | Msa0102030:intron | 40.0% | |
| TGTAGAGAGCTAAGTGAAGT+TGG | - | chr1_3:8728564-8728583 | Msa0102030:intron | 40.0% | |
| ! | AGAGCTAAGTGAAGTTGGTT+AGG | - | chr1_3:8728569-8728588 | Msa0102030:intron | 40.0% |
| ! | GAGCTAAGTGAAGTTGGTTA+GGG | - | chr1_3:8728570-8728589 | Msa0102030:intron | 40.0% |
| ! | AGCTAAGTGAAGTTGGTTAG+GGG | - | chr1_3:8728571-8728590 | Msa0102030:intron | 40.0% |
| !! | GGGGAACAAGCATTTGTTTT+TGG | + | chr1_3:8728598-8728617 | None:intergenic | 40.0% |
| CCCACATTCAGGAACTTTAA+AGG | - | chr1_3:8728668-8728687 | Msa0102030:intron | 40.0% | |
| ! | CAGGAACTTTAAAGGTCCAT+AGG | - | chr1_3:8728676-8728695 | Msa0102030:intron | 40.0% |
| TAATGCATGTTTCCCTACCT+AGG | + | chr1_3:8728869-8728888 | None:intergenic | 40.0% | |
| CTTTCACTGATCACCATCAT+GGG | - | chr1_3:8728982-8729001 | Msa0102030:intron | 40.0% | |
| CTTTACAAACAGTCCCATGA+TGG | + | chr1_3:8728998-8729017 | None:intergenic | 40.0% | |
| TCATGGGACTGTTTGTAAAG+TGG | - | chr1_3:8728998-8729017 | Msa0102030:intron | 40.0% | |
| GGACTGTTTGTAAAGTGGTT+TGG | - | chr1_3:8729003-8729022 | Msa0102030:intron | 40.0% | |
| TTGCTGCAAGCTGATGAATT+AGG | + | chr1_3:8729127-8729146 | None:intergenic | 40.0% | |
| CATCTGCAGAAAATTTGGAG+AGG | - | chr1_3:8729250-8729269 | Msa0102030:intron | 40.0% | |
| ! | GCAACCTTTGAAAACAGTGT+AGG | + | chr1_3:8729349-8729368 | None:intergenic | 40.0% |
| CAGATTCAGTGGAATCTGTA+AGG | + | chr1_3:8729416-8729435 | None:intergenic | 40.0% | |
| TGGGTGCAACCATTTGAATA+TGG | - | chr1_3:8727920-8727939 | Msa0102030:intron | 40.0% | |
| ! | CAAGTTAGTCTAGTCGTGAA+AGG | + | chr1_3:8727977-8727996 | Msa0102020:CDS | 40.0% |
| CTTTCACGACTAGACTAACT+TGG | - | chr1_3:8727975-8727994 | Msa0102030:intron | 40.0% | |
| ACATTCATGGCACAAAAAGG+TGG | - | chr1_3:8728214-8728233 | Msa0102030:intron | 40.0% | |
| TGTAGAGAGCTAAGTGAAGT+TGG | - | chr1_3:8728564-8728583 | Msa0102030:intron | 40.0% | |
| ! | AGAGCTAAGTGAAGTTGGTT+AGG | - | chr1_3:8728569-8728588 | Msa0102030:intron | 40.0% |
| ! | GAGCTAAGTGAAGTTGGTTA+GGG | - | chr1_3:8728570-8728589 | Msa0102030:intron | 40.0% |
| ! | AGCTAAGTGAAGTTGGTTAG+GGG | - | chr1_3:8728571-8728590 | Msa0102030:intron | 40.0% |
| !! | GGGGAACAAGCATTTGTTTT+TGG | + | chr1_3:8728598-8728617 | None:intergenic | 40.0% |
| CCCACATTCAGGAACTTTAA+AGG | - | chr1_3:8728668-8728687 | Msa0102030:intron | 40.0% | |
| ! | CAGGAACTTTAAAGGTCCAT+AGG | - | chr1_3:8728676-8728695 | Msa0102030:intron | 40.0% |
| TAATGCATGTTTCCCTACCT+AGG | + | chr1_3:8728869-8728888 | None:intergenic | 40.0% | |
| CTTTCACTGATCACCATCAT+GGG | - | chr1_3:8728982-8729001 | Msa0102030:intron | 40.0% | |
| CTTTACAAACAGTCCCATGA+TGG | + | chr1_3:8728998-8729017 | None:intergenic | 40.0% | |
| TCATGGGACTGTTTGTAAAG+TGG | - | chr1_3:8728998-8729017 | Msa0102030:intron | 40.0% | |
| GGACTGTTTGTAAAGTGGTT+TGG | - | chr1_3:8729003-8729022 | Msa0102030:intron | 40.0% | |
| TTGCTGCAAGCTGATGAATT+AGG | + | chr1_3:8729127-8729146 | None:intergenic | 40.0% | |
| CATCTGCAGAAAATTTGGAG+AGG | - | chr1_3:8729250-8729269 | Msa0102030:intron | 40.0% | |
| ! | GCAACCTTTGAAAACAGTGT+AGG | + | chr1_3:8729349-8729368 | None:intergenic | 40.0% |
| CAGATTCAGTGGAATCTGTA+AGG | + | chr1_3:8729416-8729435 | None:intergenic | 40.0% | |
| TGGTGGAGCTTCAAAGTTCA+TGG | + | chr1_3:8727764-8727783 | Msa0102020:intron | 45.0% | |
| GTCGTGAAAGGGATTACATG+AGG | + | chr1_3:8727965-8727984 | Msa0102020:intron | 45.0% | |
| TCACGACTAGACTAACTTGG+TGG | - | chr1_3:8727978-8727997 | Msa0102030:intron | 45.0% | |
| CACGACTAGACTAACTTGGT+GGG | - | chr1_3:8727979-8727998 | Msa0102030:intron | 45.0% | |
| ! | ACGACTAGACTAACTTGGTG+GGG | - | chr1_3:8727980-8727999 | Msa0102030:intron | 45.0% |
| GATGATAGTCCTAAGGTCCA+TGG | - | chr1_3:8728432-8728451 | Msa0102030:intron | 45.0% | |
| ! | GCTAAGTGAAGTTGGTTAGG+GGG | - | chr1_3:8728572-8728591 | Msa0102030:intron | 45.0% |
| AGGAATGGTCAAGGCATAAG+GGG | + | chr1_3:8728618-8728637 | None:intergenic | 45.0% | |
| CAGGAATGGTCAAGGCATAA+GGG | + | chr1_3:8728619-8728638 | None:intergenic | 45.0% | |
| ACAGGAATGGTCAAGGCATA+AGG | + | chr1_3:8728620-8728639 | None:intergenic | 45.0% | |
| AGAGATCACAGGAATGGTCA+AGG | + | chr1_3:8728627-8728646 | None:intergenic | 45.0% | |
| TGTGTGAGAGATCACAGGAA+TGG | + | chr1_3:8728633-8728652 | None:intergenic | 45.0% | |
| AGATGTGTGTGAGAGATCAC+AGG | + | chr1_3:8728638-8728657 | None:intergenic | 45.0% | |
| GGTTCATGGTGATCAGTGAA+AGG | + | chr1_3:8728963-8728982 | None:intergenic | 45.0% | |
| GGTGATCAGTGAAAGGTTCA+TGG | + | chr1_3:8728977-8728996 | None:intergenic | 45.0% | |
| ! | CCATGATGGTGATCAGTGAA+AGG | + | chr1_3:8728984-8729003 | None:intergenic | 45.0% |
| CCTTTCACTGATCACCATCA+TGG | - | chr1_3:8728981-8729000 | Msa0102030:intron | 45.0% | |
| !! | GTAAAGTGGTTTGGTCCAAC+TGG | - | chr1_3:8729012-8729031 | Msa0102030:intron | 45.0% |
| TACGTCGGAAGCTGATCATA+TGG | - | chr1_3:8729075-8729094 | Msa0102030:intron | 45.0% | |
| TGGAGTTCAAAGCTGGAGTA+AGG | + | chr1_3:8729185-8729204 | None:intergenic | 45.0% | |
| !! | TCCAGCTTTGAACTCCATCA+AGG | - | chr1_3:8729188-8729207 | Msa0102030:intron | 45.0% |
| CTCCATCAAGGCTCTTGTAT+CGG | - | chr1_3:8729200-8729219 | Msa0102030:intron | 45.0% | |
| ! | CTGCAGATGATGATGACATC+AGG | + | chr1_3:8729239-8729258 | None:intergenic | 45.0% |
| TGCTCGAAGTCTAAGTGAAG+AGG | + | chr1_3:8729376-8729395 | None:intergenic | 45.0% | |
| ! | TGTATGCAGCAAGAAGTGTG+AGG | - | chr1_3:8729455-8729474 | Msa0102030:intron | 45.0% |
| TGGTGGAGCTTCAAAGTTCA+TGG | + | chr1_3:8727764-8727783 | Msa0102020:intron | 45.0% | |
| GTCGTGAAAGGGATTACATG+AGG | + | chr1_3:8727965-8727984 | Msa0102020:intron | 45.0% | |
| TCACGACTAGACTAACTTGG+TGG | - | chr1_3:8727978-8727997 | Msa0102030:intron | 45.0% | |
| CACGACTAGACTAACTTGGT+GGG | - | chr1_3:8727979-8727998 | Msa0102030:intron | 45.0% | |
| ! | ACGACTAGACTAACTTGGTG+GGG | - | chr1_3:8727980-8727999 | Msa0102030:intron | 45.0% |
| GATGATAGTCCTAAGGTCCA+TGG | - | chr1_3:8728432-8728451 | Msa0102030:intron | 45.0% | |
| ! | GCTAAGTGAAGTTGGTTAGG+GGG | - | chr1_3:8728572-8728591 | Msa0102030:intron | 45.0% |
| AGGAATGGTCAAGGCATAAG+GGG | + | chr1_3:8728618-8728637 | None:intergenic | 45.0% | |
| CAGGAATGGTCAAGGCATAA+GGG | + | chr1_3:8728619-8728638 | None:intergenic | 45.0% | |
| ACAGGAATGGTCAAGGCATA+AGG | + | chr1_3:8728620-8728639 | None:intergenic | 45.0% | |
| AGAGATCACAGGAATGGTCA+AGG | + | chr1_3:8728627-8728646 | None:intergenic | 45.0% | |
| TGTGTGAGAGATCACAGGAA+TGG | + | chr1_3:8728633-8728652 | None:intergenic | 45.0% | |
| AGATGTGTGTGAGAGATCAC+AGG | + | chr1_3:8728638-8728657 | None:intergenic | 45.0% | |
| GGTTCATGGTGATCAGTGAA+AGG | + | chr1_3:8728963-8728982 | None:intergenic | 45.0% | |
| GGTGATCAGTGAAAGGTTCA+TGG | + | chr1_3:8728977-8728996 | None:intergenic | 45.0% | |
| ! | CCATGATGGTGATCAGTGAA+AGG | + | chr1_3:8728984-8729003 | None:intergenic | 45.0% |
| CCTTTCACTGATCACCATCA+TGG | - | chr1_3:8728981-8729000 | Msa0102030:intron | 45.0% | |
| !! | GTAAAGTGGTTTGGTCCAAC+TGG | - | chr1_3:8729012-8729031 | Msa0102030:intron | 45.0% |
| TACGTCGGAAGCTGATCATA+TGG | - | chr1_3:8729075-8729094 | Msa0102030:intron | 45.0% | |
| TGGAGTTCAAAGCTGGAGTA+AGG | + | chr1_3:8729185-8729204 | None:intergenic | 45.0% | |
| !! | TCCAGCTTTGAACTCCATCA+AGG | - | chr1_3:8729188-8729207 | Msa0102030:intron | 45.0% |
| CTCCATCAAGGCTCTTGTAT+CGG | - | chr1_3:8729200-8729219 | Msa0102030:intron | 45.0% | |
| ! | CTGCAGATGATGATGACATC+AGG | + | chr1_3:8729239-8729258 | None:intergenic | 45.0% |
| TGCTCGAAGTCTAAGTGAAG+AGG | + | chr1_3:8729376-8729395 | None:intergenic | 45.0% | |
| ! | TGTATGCAGCAAGAAGTGTG+AGG | - | chr1_3:8729455-8729474 | Msa0102030:intron | 45.0% |
| ! | TAGACTAACTTGGTGGGGTC+AGG | - | chr1_3:8727985-8728004 | Msa0102030:intron | 50.0% |
| GGAATGGTCAAGGCATAAGG+GGG | + | chr1_3:8728617-8728636 | None:intergenic | 50.0% | |
| GCCTTGATGGAGTTCAAAGC+TGG | + | chr1_3:8729192-8729211 | None:intergenic | 50.0% | |
| CACCGATACAAGAGCCTTGA+TGG | + | chr1_3:8729205-8729224 | None:intergenic | 50.0% | |
| ! | TAGACTAACTTGGTGGGGTC+AGG | - | chr1_3:8727985-8728004 | Msa0102030:intron | 50.0% |
| GGAATGGTCAAGGCATAAGG+GGG | + | chr1_3:8728617-8728636 | None:intergenic | 50.0% | |
| GCCTTGATGGAGTTCAAAGC+TGG | + | chr1_3:8729192-8729211 | None:intergenic | 50.0% | |
| CACCGATACAAGAGCCTTGA+TGG | + | chr1_3:8729205-8729224 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 8727743 | 8729482 | 8727743 | ID=Msa0102030;Name=Msa0102030 |
| chr1_3 | mRNA | 8727743 | 8729482 | 8727743 | ID=Msa0102030-mRNA-1;Parent=Msa0102030;Name=Msa0102030-mRNA-1;_AED=0.33;_eAED=0.35;_QI=0|0|0|0.5|1|1|2|0|59 |
| chr1_3 | exon | 8729476 | 8729482 | 8729476 | ID=Msa0102030-mRNA-1:exon:3513;Parent=Msa0102030-mRNA-1 |
| chr1_3 | exon | 8727743 | 8727915 | 8727743 | ID=Msa0102030-mRNA-1:exon:3512;Parent=Msa0102030-mRNA-1 |
| chr1_3 | CDS | 8729476 | 8729482 | 8729476 | ID=Msa0102030-mRNA-1:cds;Parent=Msa0102030-mRNA-1 |
| chr1_3 | CDS | 8727743 | 8727915 | 8727743 | ID=Msa0102030-mRNA-1:cds;Parent=Msa0102030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
