AlfalfaGEDB | Msa1043730

M. sativa cultivar zhongmu-4 / Msa1043730

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043730	KEH40036.1	87.302	63	8	0	42	104	1	63	9.20e-29	110

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1043730	A0A072VEK2	87.302	63	8	0	42	104	1	63	4.39e-29	110

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0102020	Msa1043730	0.831691	1.446297e-55	-8.615850e-47
Msa0102030	Msa1043730	0.948492	8.479425e-107	-8.615850e-47
Msa1043730	Msa1043740	0.823155	1.613018e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCATCATCTGCAGAAAATT+TGG	0.207024	7_2:+1902095	Msa1043730:CDS
CACCGATACAAGAGCCTTGA+TGG	0.355752	7_2:-1902052	Msa1043740:CDS
CAGATTCAGTGGAATCTGTA+AGG	0.450140	7_2:-1902263	Msa1043740:intron
CATCTGCAGAAAATTTGGAG+AGG	0.692643	7_2:+1902100	Msa1043730:CDS
CTCCATCAAGGCTCTTGTAT+CGG	0.512255	7_2:+1902050	Msa1043730:CDS
CTGCAGATGATGATGACATC+AGG	0.461918	7_2:-1902086	Msa1043740:intron
GCAACCTTTGAAAACAGTGT+AGG	0.611405	7_2:-1902196	Msa1043740:intron
GCCTTGATGGAGTTCAAAGC+TGG	0.517462	7_2:-1902039	Msa1043740:CDS
TCCAGCTTTGAACTCCATCA+AGG	0.536851	7_2:+1902038	Msa1043730:CDS
TCTGAAGAAGTTAAAATCTC+TGG	0.431243	7_2:+1902282	Msa1043730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAGCTTAACTTTGAATCCT+AGG	+	chr7_2:1901699-1901718	Msa1043730:CDS	30.0%
TTAACTTTGAATCCTAGGTA+GGG	+	chr7_2:1901704-1901723	Msa1043730:intron	30.0%
TTACTTATATTACCCTTACC+AGG	-	chr7_2:1901769-1901788	None:intergenic	30.0%
TCAGTGAAAGGAATTTAAGT+TGG	-	chr7_2:1901801-1901820	None:intergenic	30.0%
ATCATCATCTGCAGAAAATT+TGG	+	chr7_2:1902095-1902114	Msa1043730:CDS	30.0%
TCTGAAGAAGTTAAAATCTC+TGG	+	chr7_2:1902282-1902301	Msa1043730:CDS	30.0%
CTTAACTTTGAATCCTAGGT+AGG	+	chr7_2:1901703-1901722	Msa1043730:intron	35.0%
GCTTTCTTTCAATAACCAGT+TGG	-	chr7_2:1901880-1901899	None:intergenic	35.0%
TTCATGACAGTACACTATTC+AGG	+	chr7_2:1902138-1902157	Msa1043730:CDS	35.0%
TAATGCATGTTTCCCTACCT+AGG	-	chr7_2:1901719-1901738	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	1901695	1902332	1901695	ID=Msa1043730;Name=Msa1043730
chr7_2	mRNA	1901695	1902332	1901695	ID=Msa1043730-mRNA-1;Parent=Msa1043730;Name=Msa1043730-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|104
chr7_2	exon	1901695	1901720	1901695	ID=Msa1043730-mRNA-1:exon:402;Parent=Msa1043730-mRNA-1
chr7_2	exon	1902031	1902121	1902031	ID=Msa1043730-mRNA-1:exon:403;Parent=Msa1043730-mRNA-1
chr7_2	exon	1902135	1902332	1902135	ID=Msa1043730-mRNA-1:exon:404;Parent=Msa1043730-mRNA-1
chr7_2	CDS	1901695	1901720	1901695	ID=Msa1043730-mRNA-1:cds;Parent=Msa1043730-mRNA-1
chr7_2	CDS	1902031	1902121	1902031	ID=Msa1043730-mRNA-1:cds;Parent=Msa1043730-mRNA-1
chr7_2	CDS	1902135	1902332	1902135	ID=Msa1043730-mRNA-1:cds;Parent=Msa1043730-mRNA-1

Gene Sequence	>Msa1043730 ATGGTTAGCTTAACTTTGAATCCTAGTCCTTACTCCAGCTTTGAACTCCATCAAGGCTCTTGTATCGGTGTTCACATTTCTCCTGATGTCATCATCATCTGCAGAAAATTTGGAGAGATTTTCATGACAGTACACTATTCAGGATGCAATAGAACTGAAGCATCAATGAAGATGAAGTCCTACACTGTTTTCAAAGGTTGCATAGCCTCTTCACTTAGACTTCGAGCATTTGTGTCATTAAGAATCCTTACAGATTCCACTGAATCTGAAGAAGTTAAAATCTCTGGTGTATGCAGCAAGAAGTGTGAGGTCTAA
Protein sequence	>Msa1043730 MVSLTLNPSPYSSFELHQGSCIGVHISPDVIIICRKFGEIFMTVHYSGCNRTEASMKMKSYTVFKGCIASSLRLRAFVSLRILTDSTESEEVKISGVCSKKCEV*