Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0102910 | XP_003589555.1 | 96.502 | 486 | 14 | 2 | 1 | 486 | 1 | 483 | 0.0 | 956 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0102910 | sp|Q9LNU4|PSD3A_ARATH | 80.164 | 489 | 90 | 3 | 1 | 484 | 1 | 487 | 0.0 | 758 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0102910 | G7I8C5 | 96.502 | 486 | 14 | 2 | 1 | 486 | 1 | 483 | 0.0 | 956 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0057850 | Msa0102910 | 0.941725 | 2.520776e-101 | -8.615850e-47 |
Msa0102910 | Msa1218610 | 0.806001 | 1.016846e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0102910 | MtrunA17_Chr1g0157071 | 96.502 | 486 | 14 | 2 | 1 | 486 | 1 | 483 | 0.0 | 956 |
Msa0102910 | MtrunA17_Chr3g0143291 | 85.598 | 493 | 58 | 6 | 1 | 484 | 1 | 489 | 0.0 | 806 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0102910 | AT1G20200.1 | 80.164 | 489 | 90 | 3 | 1 | 484 | 1 | 487 | 0.0 | 758 |
Msa0102910 | AT1G75990.1 | 77.914 | 489 | 100 | 4 | 1 | 484 | 1 | 486 | 0.0 | 734 |
Find 140 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCTTTCTCCATTCCTTTC+TGG | 0.122328 | 1_3:-9810651 | None:intergenic |
GGTAGATTTAACAATTAATT+AGG | 0.148114 | 1_3:+9807606 | None:intergenic |
CATTATAGTTCGTTTACTTT+TGG | 0.198744 | 1_3:+9810600 | Msa0102910:CDS |
CTCAGTTGGCCTTTAATTCT+AGG | 0.207279 | 1_3:+9813177 | Msa0102910:CDS |
ATCCCACACTCCACCGTATT+AGG | 0.208516 | 1_3:+9807748 | Msa0102910:five_prime_UTR |
CAATCGAACGATCAAATTAT+TGG | 0.209366 | 1_3:-9812925 | None:intergenic |
AAATAAATAGTGAATATTTC+AGG | 0.220254 | 1_3:-9813497 | None:intergenic |
AAAGGCAATCCTAGAATTAA+AGG | 0.262839 | 1_3:-9813186 | None:intergenic |
GAGAACAGGAGCGGTGAGTT+TGG | 0.272838 | 1_3:-9808045 | None:intergenic |
TCAGGGATCTTCCATCTAAA+AGG | 0.273199 | 1_3:-9813479 | None:intergenic |
TTGGTGATTTAGAGCTCTTT+AGG | 0.313974 | 1_3:+9812859 | Msa0102910:CDS |
GTTTCACAAAGATGGTATTA+AGG | 0.331812 | 1_3:-9813447 | None:intergenic |
TCATATAGCTATGAGCTTAC+TGG | 0.344076 | 1_3:+9809906 | Msa0102910:CDS |
TTGTGAAATTTCAGGCTGTT+AGG | 0.344302 | 1_3:+9812835 | Msa0102910:intron |
ATAATTAATTACCTTTGAAA+TGG | 0.347909 | 1_3:-9808123 | None:intergenic |
CGTTGCAATGTGGAAGGAAT+AGG | 0.374583 | 1_3:-9807840 | None:intergenic |
GTAGATTTAACAATTAATTA+GGG | 0.377176 | 1_3:+9807607 | None:intergenic |
CAAAAGTAAACGAACTATAA+TGG | 0.378151 | 1_3:-9810599 | None:intergenic |
TGGATGGTGTCCAAGGAAAT+TGG | 0.379526 | 1_3:+9813131 | Msa0102910:CDS |
TCCCACACTCCACCGTATTA+GGG | 0.389293 | 1_3:+9807749 | Msa0102910:five_prime_UTR |
TCTTCTACCTCGGGAAAATT+CGG | 0.395517 | 1_3:+9810473 | Msa0102910:CDS |
TCCAGCCAAGCACTTGTTGC+CGG | 0.406869 | 1_3:+9809637 | Msa0102910:CDS |
ACTTCTCTGCCTGATCATAT+AGG | 0.408449 | 1_3:-9810265 | None:intergenic |
GTAAATATCTCCAATTTCCT+TGG | 0.409981 | 1_3:-9813141 | None:intergenic |
TCGTGCAGTGCGCCTTACTA+TGG | 0.413530 | 1_3:+9808013 | Msa0102910:CDS |
TTCGAATTCAGTGTAACAAA+TGG | 0.419716 | 1_3:+9810575 | Msa0102910:CDS |
CGAAACTGGTTCCAACTTGA+AGG | 0.423263 | 1_3:+9807974 | Msa0102910:CDS |
GGAGAGATCCTGACAGCAAT+TGG | 0.432817 | 1_3:-9813390 | None:intergenic |
TTAGAACGAATGAAAATAAC+GGG | 0.436922 | 1_3:-9813725 | None:intergenic |
CGAAAACCCTGTGCTGCAAC+TGG | 0.443308 | 1_3:-9810556 | None:intergenic |
GGAATAGATTGAGAAGGTAT+TGG | 0.443551 | 1_3:-9807819 | None:intergenic |
ATAACATCGATCATCGAAAC+TGG | 0.447341 | 1_3:+9807960 | Msa0102910:CDS |
TAATTAATTACCTTTGAAAT+GGG | 0.447347 | 1_3:-9808122 | None:intergenic |
CCCATTGGTTGTAGTTGCAT+TGG | 0.450418 | 1_3:+9807658 | Msa0102910:five_prime_UTR |
GCTAGCTGAGGAACAAGCTT+TGG | 0.450773 | 1_3:-9809814 | None:intergenic |
GCGACATTGGATCATGCTAA+TGG | 0.451268 | 1_3:+9813107 | Msa0102910:CDS |
TGTCGCTATCTCTTCTACCT+CGG | 0.453989 | 1_3:+9810463 | Msa0102910:CDS |
TTCTTCTTCGAACCCTAATA+CGG | 0.454997 | 1_3:-9807761 | None:intergenic |
ATTGTGCATGTTAAGACAAA+AGG | 0.457200 | 1_3:-9813204 | None:intergenic |
TTATCTTACCAATTGCTGTC+AGG | 0.462795 | 1_3:+9813382 | Msa0102910:three_prime_UTR |
TCCGGCAACAAGTGCTTGGC+TGG | 0.465143 | 1_3:-9809638 | None:intergenic |
TTCACTAATTATATATTGCT+AGG | 0.467376 | 1_3:+9813634 | Msa0102910:three_prime_UTR |
AATAAATAGTGAATATTTCA+GGG | 0.469255 | 1_3:-9813496 | None:intergenic |
TGGACCTTAACGCCATAGTA+AGG | 0.471828 | 1_3:-9808025 | None:intergenic |
GTCGCTATCTCTTCTACCTC+GGG | 0.471871 | 1_3:+9810464 | Msa0102910:CDS |
TAAAGCACCAGTTGCAGCAC+AGG | 0.474666 | 1_3:+9810549 | Msa0102910:CDS |
TTTAGAACGAATGAAAATAA+CGG | 0.481530 | 1_3:-9813726 | None:intergenic |
GATAAACATGAGGGAGCAAA+TGG | 0.481802 | 1_3:-9813411 | None:intergenic |
TTTGCGAACTTCCTTCAAGT+TGG | 0.483201 | 1_3:-9807985 | None:intergenic |
TAGCTCCGGCAACAAGTGCT+TGG | 0.485009 | 1_3:-9809642 | None:intergenic |
TTTATTGATTATTTGACGGT+AGG | 0.486839 | 1_3:+9813694 | Msa0102910:three_prime_UTR |
TCGAATTCAGTGTAACAAAT+GGG | 0.489906 | 1_3:+9810576 | Msa0102910:CDS |
ACATTAGTAAGTTCAAAGTA+AGG | 0.496258 | 1_3:-9810679 | None:intergenic |
TTCTTCGAACCCTAATACGG+TGG | 0.498358 | 1_3:-9807758 | None:intergenic |
AAGGAATGGAGAAAGCTTTG+AGG | 0.498396 | 1_3:+9810656 | Msa0102910:CDS |
TTCTTATCTTCCCATTTCAA+AGG | 0.499141 | 1_3:+9808112 | Msa0102910:CDS |
GGAGATCTTGCTGAAATTCG+AGG | 0.500197 | 1_3:+9809927 | Msa0102910:CDS |
ATCATATTCTCGCATCTCAC+TGG | 0.503942 | 1_3:+9812989 | Msa0102910:CDS |
ACCAATGCAACTACAACCAA+TGG | 0.505481 | 1_3:-9807659 | None:intergenic |
GGCGTAATATGTTGTTCTGT+CGG | 0.506845 | 1_3:+9813656 | Msa0102910:three_prime_UTR |
GTTCCTCAGCTAGCATTGAT+CGG | 0.507928 | 1_3:+9809823 | Msa0102910:CDS |
TCAAGGAAAGAAGAGAGAAC+AGG | 0.509051 | 1_3:-9808059 | None:intergenic |
AATGGGAAGATAAGAAGATA+AGG | 0.511950 | 1_3:-9808105 | None:intergenic |
TAAGAAGATAAGGTAGAATG+AGG | 0.511987 | 1_3:-9808095 | None:intergenic |
TGCAAAAGAGTCTCTCCTGC+AGG | 0.518992 | 1_3:+9810519 | Msa0102910:CDS |
GCGCCATGATGAGCTTGGTC+AGG | 0.519144 | 1_3:+9810125 | Msa0102910:CDS |
GATTGCGTCATAATGTCATC+AGG | 0.522018 | 1_3:+9812943 | Msa0102910:CDS |
CGTCATAATGTCATCAGGAC+TGG | 0.522279 | 1_3:+9812948 | Msa0102910:CDS |
TTAATTAGTGAAAAGCCCAT+TGG | 0.522570 | 1_3:+9807643 | Msa0102910:five_prime_UTR |
CAATCCGGTGCAACTGAAAG+AGG | 0.522728 | 1_3:-9810095 | None:intergenic |
TATCAAAGGCTATCCGTGAT+GGG | 0.525169 | 1_3:+9813075 | Msa0102910:CDS |
ATGCTTTCAGCATCAGCAAT+GGG | 0.526668 | 1_3:-9813050 | None:intergenic |
CCACTACAACCTATATGATC+AGG | 0.528458 | 1_3:+9810256 | Msa0102910:CDS |
GTGCTTTACGAGCAGCCTGC+AGG | 0.528769 | 1_3:-9810534 | None:intergenic |
TCACTAATTATATATTGCTA+GGG | 0.529252 | 1_3:+9813635 | Msa0102910:three_prime_UTR |
TGCGCCTTACTATGGCGTTA+AGG | 0.531569 | 1_3:+9808021 | Msa0102910:CDS |
CTCTACAAATGAGCCTCAGT+TGG | 0.532972 | 1_3:+9813163 | Msa0102910:CDS |
GAAAATTCGGACCATTCAGT+TGG | 0.533575 | 1_3:+9810486 | Msa0102910:CDS |
TGGACAAAGATAGTCCTCTC+AGG | 0.539150 | 1_3:-9810631 | None:intergenic |
TTGCTGAGAAGCGGAGAGAG+AGG | 0.541099 | 1_3:+9813279 | Msa0102910:CDS |
TGAGGCACATTCAAACCAGC+AGG | 0.543084 | 1_3:+9810310 | Msa0102910:CDS |
ATCGGTATACTCCAACTGAA+TGG | 0.545584 | 1_3:-9810497 | None:intergenic |
CCAATGCAACTACAACCAAT+GGG | 0.547766 | 1_3:-9807658 | None:intergenic |
AAATTTCAGGCTGTTAGGAT+TGG | 0.549112 | 1_3:+9812840 | Msa0102910:intron |
TAACAGTAGATTTCTAGCTC+CGG | 0.549344 | 1_3:-9809656 | None:intergenic |
GAGGAGGAAGAACATGATCA+AGG | 0.550308 | 1_3:-9808076 | None:intergenic |
GCACCCTCTTTCAGTTGCAC+CGG | 0.553574 | 1_3:+9810091 | Msa0102910:intron |
ATATCAAAGGCTATCCGTGA+TGG | 0.556289 | 1_3:+9813074 | Msa0102910:CDS |
AGGACTATCTTTGTCCAGAA+AGG | 0.556719 | 1_3:+9810637 | Msa0102910:CDS |
TGCTGAAAGCATTATATCAA+AGG | 0.557966 | 1_3:+9813061 | Msa0102910:CDS |
AAACCCACGTTTCACAAAGA+TGG | 0.558815 | 1_3:-9813455 | None:intergenic |
AACCCTAATACGGTGGAGTG+TGG | 0.563050 | 1_3:-9807751 | None:intergenic |
GGAATAGGAATAGATTGAGA+AGG | 0.563592 | 1_3:-9807825 | None:intergenic |
CCTGATCATATAGGTTGTAG+TGG | 0.563760 | 1_3:-9810256 | None:intergenic |
GGCAGAGAAGTTGAGGTCGA+AGG | 0.564667 | 1_3:+9810277 | Msa0102910:CDS |
AATACCATCTTTGTGAAACG+TGG | 0.565186 | 1_3:+9813451 | Msa0102910:three_prime_UTR |
AGAAAGAAATTGCTGAGAAG+CGG | 0.566547 | 1_3:+9813270 | Msa0102910:CDS |
GCTCCCTCATGTTTATCGTG+TGG | 0.569954 | 1_3:+9813417 | Msa0102910:three_prime_UTR |
ACCCTAATACGGTGGAGTGT+GGG | 0.571271 | 1_3:-9807750 | None:intergenic |
TGGGGCAATTGATGCGACAT+TGG | 0.576856 | 1_3:+9813094 | Msa0102910:CDS |
GTCGAAGGCTCCACGATTTG+AGG | 0.579551 | 1_3:+9810292 | Msa0102910:CDS |
ATGATCAGGCAGAGAAGTTG+AGG | 0.580498 | 1_3:+9810270 | Msa0102910:CDS |
GCAACAACAAGAGCAAGAGC+TGG | 0.580630 | 1_3:+9813301 | Msa0102910:CDS |
CAACCTGACCAAGCTCATCA+TGG | 0.583223 | 1_3:-9810128 | None:intergenic |
ACCTTGCGCCATGATGAGCT+TGG | 0.585868 | 1_3:+9810120 | Msa0102910:CDS |
CCGATGTAGCTCAGAAGTTG+AGG | 0.586467 | 1_3:+9813012 | Msa0102910:CDS |
AATGCTTTCAGCATCAGCAA+TGG | 0.590057 | 1_3:-9813051 | None:intergenic |
TGGTGATCATGAGATGGAAG+TGG | 0.590531 | 1_3:+9809586 | Msa0102910:CDS |
GAAGATAAGGTAGAATGAGG+AGG | 0.594335 | 1_3:-9808092 | None:intergenic |
TTGTCTTAACATGCACAATG+AGG | 0.598440 | 1_3:+9813208 | Msa0102910:CDS |
CATGGCGCAAGGTAGCAATC+CGG | 0.599609 | 1_3:-9810110 | None:intergenic |
TATCTTTGTCCAGAAAGGAA+TGG | 0.604027 | 1_3:+9810642 | Msa0102910:CDS |
AGAGCTGGCAAAGCATATTG+AGG | 0.605558 | 1_3:+9813316 | Msa0102910:CDS |
ATAGGATGGTGATCATGAGA+TGG | 0.608295 | 1_3:+9809580 | Msa0102910:intron |
GCTACTACTTTCAGTACAGA+CGG | 0.609313 | 1_3:+9812900 | Msa0102910:CDS |
ATACCATCTTTGTGAAACGT+GGG | 0.609563 | 1_3:+9813452 | Msa0102910:three_prime_UTR |
GAGATCTTGCTGAAATTCGA+GGG | 0.610331 | 1_3:+9809928 | Msa0102910:CDS |
CATTGGATCATGCTAATGGA+TGG | 0.611762 | 1_3:+9813111 | Msa0102910:CDS |
ACCAAGCTCATCATGGCGCA+AGG | 0.611785 | 1_3:-9810121 | None:intergenic |
TCGCATCAATTGCCCCATCA+CGG | 0.615331 | 1_3:-9813088 | None:intergenic |
CCTCAACTTCTGAGCTACAT+CGG | 0.618788 | 1_3:-9813012 | None:intergenic |
AAAGCACCAGTTGCAGCACA+GGG | 0.621042 | 1_3:+9810550 | Msa0102910:CDS |
GCTGGCAAAGCATATTGAGG+AGG | 0.622117 | 1_3:+9813319 | Msa0102910:CDS |
TTGAAAAGCTGCAGATGTTG+CGG | 0.622363 | 1_3:-9809612 | None:intergenic |
TTACTACGTTGCAATGTGGA+AGG | 0.626545 | 1_3:-9807846 | None:intergenic |
GGATCATGCTAATGGATGGA+TGG | 0.627982 | 1_3:+9813115 | Msa0102910:CDS |
AATCCGGTGCAACTGAAAGA+GGG | 0.632325 | 1_3:-9810094 | None:intergenic |
TTCTCCACACGATAAACATG+AGG | 0.640327 | 1_3:-9813421 | None:intergenic |
GAAAGAAGAGAGAACAGGAG+CGG | 0.643603 | 1_3:-9808054 | None:intergenic |
GAGCCGATCAATGCTAGCTG+AGG | 0.644380 | 1_3:-9809826 | None:intergenic |
TTTGAATGTGCCTCAAATCG+TGG | 0.646040 | 1_3:-9810302 | None:intergenic |
TAATGGATGGATGGTGTCCA+AGG | 0.648234 | 1_3:+9813124 | Msa0102910:CDS |
ATCAAAGGCTATCCGTGATG+GGG | 0.650446 | 1_3:+9813076 | Msa0102910:CDS |
GATCATATAGGTTGTAGTGG+AGG | 0.650992 | 1_3:-9810253 | None:intergenic |
CTAGAATTAAAGGCCAACTG+AGG | 0.674246 | 1_3:-9813176 | None:intergenic |
AGAGTTACTACGTTGCAATG+TGG | 0.679250 | 1_3:-9807850 | None:intergenic |
TGATCAGAAACGATACAATG+AGG | 0.681879 | 1_3:+9809703 | Msa0102910:CDS |
TCTCCACACGATAAACATGA+GGG | 0.704536 | 1_3:-9813420 | None:intergenic |
ATGGAAGTACTTAATCATTG+CGG | 0.709943 | 1_3:+9813562 | Msa0102910:three_prime_UTR |
AGTGTGGGATACGAAGACGA+TGG | 0.765155 | 1_3:-9807735 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAGAGTAATTAATTTA+GGG | + | chr1_3:9811854-9811873 | Msa0102910:intron | 10.0% |
!!! | TAATTAATTACCTTTGAAAT+GGG | - | chr1_3:9808125-9808144 | None:intergenic | 15.0% |
!!! | ATAATTAATTACCTTTGAAA+TGG | - | chr1_3:9808126-9808145 | None:intergenic | 15.0% |
!!! | CATTAAATTGTTTTTGTATA+TGG | - | chr1_3:9808382-9808401 | None:intergenic | 15.0% |
!!! | TTGCTTTAATTTTTCAATTT+AGG | + | chr1_3:9809791-9809810 | Msa0102910:intron | 15.0% |
!!! | TCTATATTTTAGTTTTCATT+TGG | + | chr1_3:9810360-9810379 | Msa0102910:intron | 15.0% |
!!! | TAAAAGTGAACTTATTTTAT+TGG | + | chr1_3:9810746-9810765 | Msa0102910:intron | 15.0% |
!!! | AACTTTAAGACATATAAATT+AGG | - | chr1_3:9810860-9810879 | None:intergenic | 15.0% |
!! | AATTAGAAAGAAATTTAATC+TGG | + | chr1_3:9811297-9811316 | Msa0102910:intron | 15.0% |
!! | GAATTAAAAAAATTAAGTGT+TGG | + | chr1_3:9811403-9811422 | Msa0102910:intron | 15.0% |
!! | ATTTACTTAATTAATTAGAC+TGG | + | chr1_3:9811576-9811595 | Msa0102910:intron | 15.0% |
!! | AATATTAAAAGAAAGTAAGT+TGG | + | chr1_3:9811828-9811847 | Msa0102910:intron | 15.0% |
!! | GAATAAAGAGTAATTAATTT+AGG | + | chr1_3:9811853-9811872 | Msa0102910:intron | 15.0% |
!! | ATATTTATGAGGATATAAAT+TGG | - | chr1_3:9812445-9812464 | None:intergenic | 15.0% |
!! | TATTACAGAATTTAAACAAA+AGG | - | chr1_3:9812670-9812689 | None:intergenic | 15.0% |
!! | AAGACAGAAATAATATATTA+TGG | - | chr1_3:9812788-9812807 | None:intergenic | 15.0% |
!! | AATAAATAGTGAATATTTCA+GGG | - | chr1_3:9813499-9813518 | None:intergenic | 15.0% |
!! | AAATAAATAGTGAATATTTC+AGG | - | chr1_3:9813500-9813519 | None:intergenic | 15.0% |
!!! | GATTTTTAGATTATGTAGTA+AGG | + | chr1_3:9808560-9808579 | Msa0102910:intron | 20.0% |
!! | TCTGTATAAATAACTCAATT+GGG | - | chr1_3:9809389-9809408 | None:intergenic | 20.0% |
!!! | TTAAAAGTATCATTTGTCAA+AGG | - | chr1_3:9809497-9809516 | None:intergenic | 20.0% |
!! | CTGAAAATAAAGATGTTATT+TGG | - | chr1_3:9810072-9810091 | None:intergenic | 20.0% |
!!! | CATTTGGTTTAATTAATTGT+TGG | + | chr1_3:9810376-9810395 | Msa0102910:intron | 20.0% |
!!! | ATTATAGTTCGTTTACTTTT+GGG | + | chr1_3:9810601-9810620 | Msa0102910:CDS | 20.0% |
!!! | TTTACATTTTCATCTATACT+TGG | + | chr1_3:9810705-9810724 | Msa0102910:intron | 20.0% |
!! | TATATCAAAATAAGAAGCTA+CGG | - | chr1_3:9810792-9810811 | None:intergenic | 20.0% |
!! | ATACACCTTATTCTAAATAT+TGG | + | chr1_3:9811259-9811278 | Msa0102910:intron | 20.0% |
!!! | ATCAACCAATATTTAGAATA+AGG | - | chr1_3:9811267-9811286 | None:intergenic | 20.0% |
!!! | CTGCATTTCTTTTATATAAA+TGG | + | chr1_3:9811498-9811517 | Msa0102910:intron | 20.0% |
!! | CTGATGAAAAATAAATAGAA+TGG | - | chr1_3:9811553-9811572 | None:intergenic | 20.0% |
!! | TTCTCTCTCATAATAATTAA+GGG | - | chr1_3:9811810-9811829 | None:intergenic | 20.0% |
!! | ATTCTCTCTCATAATAATTA+AGG | - | chr1_3:9811811-9811830 | None:intergenic | 20.0% |
!!! | TAATTAATTTAGGGTATTCA+TGG | + | chr1_3:9811863-9811882 | Msa0102910:intron | 20.0% |
!!! | CTATTTTCAATGTATTTTCT+TGG | + | chr1_3:9811924-9811943 | Msa0102910:intron | 20.0% |
!! | TGTATACACATATATTTATG+AGG | - | chr1_3:9812456-9812475 | None:intergenic | 20.0% |
!! | GAAAATTGAATGAAAAATAG+TGG | - | chr1_3:9812738-9812757 | None:intergenic | 20.0% |
!! | AAAAACTTTCATGTTAGATT+TGG | - | chr1_3:9812760-9812779 | None:intergenic | 20.0% |
!! | TTCACTAATTATATATTGCT+AGG | + | chr1_3:9813634-9813653 | Msa0102910:three_prime_UTR | 20.0% |
!! | TCACTAATTATATATTGCTA+GGG | + | chr1_3:9813635-9813654 | Msa0102910:three_prime_UTR | 20.0% |
!! | TCAAATAATCAATAAAAACG+AGG | - | chr1_3:9813690-9813709 | None:intergenic | 20.0% |
!!! | CGTTTTTATTGATTATTTGA+CGG | + | chr1_3:9813690-9813709 | Msa0102910:three_prime_UTR | 20.0% |
!!! | TTTAGAACGAATGAAAATAA+CGG | - | chr1_3:9813729-9813748 | None:intergenic | 20.0% |
!! | GCTTTTCACTAATTAATGTT+GGG | - | chr1_3:9807639-9807658 | None:intergenic | 25.0% |
!!! | TTTTTTGCTTTCAGATTTGA+AGG | + | chr1_3:9807935-9807954 | Msa0102910:intron | 25.0% |
! | GACATTGTGAGTAATAAATA+AGG | - | chr1_3:9808185-9808204 | None:intergenic | 25.0% |
!!! | ATAAGTTTTGTGAGATTGTT+TGG | + | chr1_3:9808263-9808282 | Msa0102910:intron | 25.0% |
!!! | TAAGTTTTGTGAGATTGTTT+GGG | + | chr1_3:9808264-9808283 | Msa0102910:intron | 25.0% |
! | GTTGAAAAAGCTTATGAAAA+TGG | - | chr1_3:9808314-9808333 | None:intergenic | 25.0% |
!! | TTTTCATAAGTTCTCCAATT+TGG | + | chr1_3:9808337-9808356 | Msa0102910:intron | 25.0% |
!!! | GTTGGTTTTATAATCCAAAT+TGG | - | chr1_3:9808354-9808373 | None:intergenic | 25.0% |
!! | TTTTTGTATATGGTACAAGT+TGG | - | chr1_3:9808372-9808391 | None:intergenic | 25.0% |
! | TAGATAACTATAAGAGATAG+AGG | + | chr1_3:9808587-9808606 | Msa0102910:intron | 25.0% |
! | AAACAACTTATAAGCGTTTA+TGG | + | chr1_3:9809086-9809105 | Msa0102910:intron | 25.0% |
!!! | TTGATTGAGTGAATTGATTT+TGG | + | chr1_3:9809155-9809174 | Msa0102910:intron | 25.0% |
!!! | TAGAATCAATTCTACTTTTG+AGG | + | chr1_3:9809263-9809282 | Msa0102910:intron | 25.0% |
!! | AAAATTGATTTCGACATGTT+TGG | - | chr1_3:9809291-9809310 | None:intergenic | 25.0% |
! | TGTATAAATAACTCAATTGG+GGG | - | chr1_3:9809387-9809406 | None:intergenic | 25.0% |
! | CTGTATAAATAACTCAATTG+GGG | - | chr1_3:9809388-9809407 | None:intergenic | 25.0% |
! | CTCTGTATAAATAACTCAAT+TGG | - | chr1_3:9809390-9809409 | None:intergenic | 25.0% |
!!! | AAGCTTTGTTCTTTTCTATT+GGG | + | chr1_3:9809554-9809573 | Msa0102910:intron | 25.0% |
! | ATATAATCAATCATCATCAG+AGG | - | chr1_3:9809764-9809783 | None:intergenic | 25.0% |
! | TTTAAAAATGAATTCAGAGC+TGG | + | chr1_3:9809974-9809993 | Msa0102910:intron | 25.0% |
! | CAAAAGTAAACGAACTATAA+TGG | - | chr1_3:9810602-9810621 | None:intergenic | 25.0% |
!! | CATTATAGTTCGTTTACTTT+TGG | + | chr1_3:9810600-9810619 | Msa0102910:CDS | 25.0% |
! | ACATTAGTAAGTTCAAAGTA+AGG | - | chr1_3:9810682-9810701 | None:intergenic | 25.0% |
!!! | AAATAAGTTCACTTTTACTC+TGG | - | chr1_3:9810743-9810762 | None:intergenic | 25.0% |
! | TACAGTAAAAATTAAGGCTT+TGG | - | chr1_3:9811050-9811069 | None:intergenic | 25.0% |
!! | AGCCTTAATTTTTACTGTAT+TGG | + | chr1_3:9811051-9811070 | Msa0102910:intron | 25.0% |
!!! | TGCTATTTATGTCAAAGTTT+TGG | - | chr1_3:9811106-9811125 | None:intergenic | 25.0% |
! | AATAAGGTGTATGTTTCAAT+TGG | - | chr1_3:9811251-9811270 | None:intergenic | 25.0% |
! | GAAAGATAAGGATAAAAAAG+TGG | - | chr1_3:9811458-9811477 | None:intergenic | 25.0% |
! | TATGAAAAGATGCACAAAAT+AGG | - | chr1_3:9811631-9811650 | None:intergenic | 25.0% |
!!! | TTGTTTCTAATAAAAAGCAC+CGG | - | chr1_3:9811704-9811723 | None:intergenic | 25.0% |
! | TGGTCAATCTTCTTATAAAA+AGG | - | chr1_3:9811751-9811770 | None:intergenic | 25.0% |
!! | ATTAAAAGAAAGTAAGTTGG+TGG | + | chr1_3:9811831-9811850 | Msa0102910:intron | 25.0% |
!!! | GTCTTTTGTTTCTTGTATAA+AGG | + | chr1_3:9811961-9811980 | Msa0102910:intron | 25.0% |
! | AACTTTGAATTGAGAAAATG+TGG | + | chr1_3:9812251-9812270 | Msa0102910:intron | 25.0% |
! | CATCATTTCTTACACAAATA+AGG | + | chr1_3:9812309-9812328 | Msa0102910:intron | 25.0% |
! | AAATGACATAGAACTTAAGT+GGG | - | chr1_3:9812360-9812379 | None:intergenic | 25.0% |
! | AAAATGACATAGAACTTAAG+TGG | - | chr1_3:9812361-9812380 | None:intergenic | 25.0% |
!!! | AACTCAATTTTTTTAGAACC+TGG | + | chr1_3:9812403-9812422 | Msa0102910:intron | 25.0% |
!!! | ACTCAATTTTTTTAGAACCT+GGG | + | chr1_3:9812404-9812423 | Msa0102910:intron | 25.0% |
!!! | TATATTGTGGCTTTTAGTTT+TGG | + | chr1_3:9812509-9812528 | Msa0102910:intron | 25.0% |
! | TTTAGTTAAACACAATGTCA+CGG | + | chr1_3:9812559-9812578 | Msa0102910:intron | 25.0% |
! | AACAAAAGGATAATTGTTTC+AGG | - | chr1_3:9812656-9812675 | None:intergenic | 25.0% |
! | TGTATATGTTGTGAAATTTC+AGG | + | chr1_3:9812827-9812846 | Msa0102910:intron | 25.0% |
!!! | TTCTCTTTATGTGTGTTTTT+TGG | - | chr1_3:9813254-9813273 | None:intergenic | 25.0% |
!!! | CTATTTATTTTGAACCATTG+TGG | + | chr1_3:9813510-9813529 | Msa0102910:three_prime_UTR | 25.0% |
!! | AGTAAATTCTTTTTCCACAA+TGG | - | chr1_3:9813527-9813546 | None:intergenic | 25.0% |
!! | TTAAGTACTTCCATTGTTTT+TGG | - | chr1_3:9813556-9813575 | None:intergenic | 25.0% |
! | AGTCATCTTATCAACAAAAA+AGG | - | chr1_3:9813605-9813624 | None:intergenic | 25.0% |
!! | TTTATTGATTATTTGACGGT+AGG | + | chr1_3:9813694-9813713 | Msa0102910:three_prime_UTR | 25.0% |
! | TTAGAACGAATGAAAATAAC+GGG | - | chr1_3:9813728-9813747 | None:intergenic | 25.0% |
! | GGCTTTTCACTAATTAATGT+TGG | - | chr1_3:9807640-9807659 | None:intergenic | 30.0% |
TTAATTAGTGAAAAGCCCAT+TGG | + | chr1_3:9807643-9807662 | Msa0102910:five_prime_UTR | 30.0% | |
TAAATGAAAGTGAGAGAAAG+TGG | - | chr1_3:9807895-9807914 | None:intergenic | 30.0% | |
TAAGAAGATAAGGTAGAATG+AGG | - | chr1_3:9808098-9808117 | None:intergenic | 30.0% | |
AATGGGAAGATAAGAAGATA+AGG | - | chr1_3:9808108-9808127 | None:intergenic | 30.0% | |
TTCTTATCTTCCCATTTCAA+AGG | + | chr1_3:9808112-9808131 | Msa0102910:CDS | 30.0% | |
ATAAGGTGAAATCTAAAGAG+AGG | - | chr1_3:9808168-9808187 | None:intergenic | 30.0% | |
AAGCTTATGAAAATGGTCAT+GGG | - | chr1_3:9808307-9808326 | None:intergenic | 30.0% | |
AAAGCTTATGAAAATGGTCA+TGG | - | chr1_3:9808308-9808327 | None:intergenic | 30.0% | |
CATAACCATGTATAGCATAA+AGG | - | chr1_3:9808509-9808528 | None:intergenic | 30.0% | |
TATGATATACTCAGCTTATG+TGG | + | chr1_3:9808525-9808544 | Msa0102910:intron | 30.0% | |
! | CTCTCTCTTATAATTTTCCT+AGG | - | chr1_3:9808617-9808636 | None:intergenic | 30.0% |
ATAGGCTTAATCAGTTATCT+CGG | - | chr1_3:9808854-9808873 | None:intergenic | 30.0% | |
TAACTGATTAAGCCTATGTT+TGG | + | chr1_3:9808857-9808876 | Msa0102910:intron | 30.0% | |
! | ATAGTAGCTTTTCCAAATCA+CGG | + | chr1_3:9808948-9808967 | Msa0102910:intron | 30.0% |
!! | TTTGGTTTAGAGTTTTGCAA+TGG | - | chr1_3:9809000-9809019 | None:intergenic | 30.0% |
!!! | AAGCTGTTTTAGTATGTGTT+TGG | - | chr1_3:9809018-9809037 | None:intergenic | 30.0% |
TAGCAAATTAAGCGTATGTT+TGG | + | chr1_3:9809115-9809134 | Msa0102910:intron | 30.0% | |
! | AGGAGTCAAAATTGATTCTA+GGG | - | chr1_3:9809318-9809337 | None:intergenic | 30.0% |
!!! | CAAGCTTTGTTCTTTTCTAT+TGG | + | chr1_3:9809553-9809572 | Msa0102910:intron | 30.0% |
! | TTCTTTTCTATTGGGTGTAT+AGG | + | chr1_3:9809562-9809581 | Msa0102910:intron | 30.0% |
TGATGATTGATTATATGCTG+AGG | + | chr1_3:9809768-9809787 | Msa0102910:intron | 30.0% | |
!!! | GGTGCTATTTATAAAGGTTT+TGG | + | chr1_3:9810168-9810187 | Msa0102910:intron | 30.0% |
!!! | TTTTGGAACATATACTTACC+TGG | + | chr1_3:9810185-9810204 | Msa0102910:intron | 30.0% |
TTCGAATTCAGTGTAACAAA+TGG | + | chr1_3:9810575-9810594 | Msa0102910:CDS | 30.0% | |
TCGAATTCAGTGTAACAAAT+GGG | + | chr1_3:9810576-9810595 | Msa0102910:CDS | 30.0% | |
! | GACGAAATAAAGAGTACATA+GGG | - | chr1_3:9811001-9811020 | None:intergenic | 30.0% |
! | AGACGAAATAAAGAGTACAT+AGG | - | chr1_3:9811002-9811021 | None:intergenic | 30.0% |
GGCCAATACAGTAAAAATTA+AGG | - | chr1_3:9811056-9811075 | None:intergenic | 30.0% | |
AACATCTGTGAATGATTTCT+TGG | - | chr1_3:9811077-9811096 | None:intergenic | 30.0% | |
AATTGTGAACCAAGAAGTTT+AGG | + | chr1_3:9811127-9811146 | Msa0102910:intron | 30.0% | |
TAGACAGATTTCATTGAAAG+AGG | + | chr1_3:9811159-9811178 | Msa0102910:intron | 30.0% | |
CAAAGGAACTATTGAGTTTA+GGG | - | chr1_3:9811203-9811222 | None:intergenic | 30.0% | |
ACAAAGGAACTATTGAGTTT+AGG | - | chr1_3:9811204-9811223 | None:intergenic | 30.0% | |
TCAATAGTTCCTTTGTCATT+TGG | + | chr1_3:9811208-9811227 | Msa0102910:intron | 30.0% | |
TTGTTAAAGCGTGAAAGATA+AGG | - | chr1_3:9811470-9811489 | None:intergenic | 30.0% | |
! | TTGTTTCTTGTATAAAGGAC+CGG | + | chr1_3:9811966-9811985 | Msa0102910:intron | 30.0% |
TGAATTACTCTCTAAATTGC+AGG | + | chr1_3:9812015-9812034 | Msa0102910:intron | 30.0% | |
! | GAAATTTGAAGCTAAATGAC+AGG | + | chr1_3:9812286-9812305 | Msa0102910:intron | 30.0% |
AAAAGCCACAATATACTACA+GGG | - | chr1_3:9812504-9812523 | None:intergenic | 30.0% | |
TAAAAGCCACAATATACTAC+AGG | - | chr1_3:9812505-9812524 | None:intergenic | 30.0% | |
CAATCGAACGATCAAATTAT+TGG | - | chr1_3:9812928-9812947 | None:intergenic | 30.0% | |
!! | TGCTGAAAGCATTATATCAA+AGG | + | chr1_3:9813061-9813080 | Msa0102910:CDS | 30.0% |
GTAAATATCTCCAATTTCCT+TGG | - | chr1_3:9813144-9813163 | None:intergenic | 30.0% | |
AAAGGCAATCCTAGAATTAA+AGG | - | chr1_3:9813189-9813208 | None:intergenic | 30.0% | |
ATTGTGCATGTTAAGACAAA+AGG | - | chr1_3:9813207-9813226 | None:intergenic | 30.0% | |
GTTTCACAAAGATGGTATTA+AGG | - | chr1_3:9813450-9813469 | None:intergenic | 30.0% | |
TACTCATTAGCCAAAAACAA+TGG | + | chr1_3:9813543-9813562 | Msa0102910:three_prime_UTR | 30.0% | |
!! | ATGGAAGTACTTAATCATTG+CGG | + | chr1_3:9813562-9813581 | Msa0102910:three_prime_UTR | 30.0% |
TTCTTCTTCGAACCCTAATA+CGG | - | chr1_3:9807764-9807783 | None:intergenic | 35.0% | |
! | GGAATAGATTGAGAAGGTAT+TGG | - | chr1_3:9807822-9807841 | None:intergenic | 35.0% |
GGAATAGGAATAGATTGAGA+AGG | - | chr1_3:9807828-9807847 | None:intergenic | 35.0% | |
ATAACATCGATCATCGAAAC+TGG | + | chr1_3:9807960-9807979 | Msa0102910:CDS | 35.0% | |
ATCTAAAGAGAGGCTAAGAT+TGG | - | chr1_3:9808158-9808177 | None:intergenic | 35.0% | |
AGTAAGCTAAAACCAGGTTA+AGG | - | chr1_3:9808207-9808226 | None:intergenic | 35.0% | |
TTGGTAAGTAAGCTAAAACC+AGG | - | chr1_3:9808213-9808232 | None:intergenic | 35.0% | |
ACCAAAACAGCTTGTATTGT+AGG | + | chr1_3:9808228-9808247 | Msa0102910:intron | 35.0% | |
! | ACCTACAATACAAGCTGTTT+TGG | - | chr1_3:9808232-9808251 | None:intergenic | 35.0% |
CTAAGCCTTTATGCTATACA+TGG | + | chr1_3:9808501-9808520 | Msa0102910:intron | 35.0% | |
TAAGAGATAGAGGAAAACCT+AGG | + | chr1_3:9808597-9808616 | Msa0102910:intron | 35.0% | |
!!! | ATTTTGGCTTGATGTGGAAA+TGG | - | chr1_3:9808893-9808912 | None:intergenic | 35.0% |
! | TTTTCCAAATCACGGCAAAA+AGG | + | chr1_3:9808956-9808975 | Msa0102910:intron | 35.0% |
! | GGAGTCAAAATTGATTCTAG+GGG | - | chr1_3:9809317-9809336 | None:intergenic | 35.0% |
! | GAGGAGTCAAAATTGATTCT+AGG | - | chr1_3:9809319-9809338 | None:intergenic | 35.0% |
TAAACATGTTGGTGTGTGTT+TGG | - | chr1_3:9809353-9809372 | None:intergenic | 35.0% | |
ACCAACATGTTTATCCTAAC+AGG | + | chr1_3:9809360-9809379 | Msa0102910:intron | 35.0% | |
CCAACATGTTTATCCTAACA+GGG | + | chr1_3:9809361-9809380 | Msa0102910:intron | 35.0% | |
TATCATTTGTCAAAGGCAGT+GGG | - | chr1_3:9809490-9809509 | None:intergenic | 35.0% | |
TTTCTATTGGGTGTATAGGA+TGG | + | chr1_3:9809566-9809585 | Msa0102910:intron | 35.0% | |
!! | TAACAGTAGATTTCTAGCTC+CGG | - | chr1_3:9809659-9809678 | None:intergenic | 35.0% |
TGATCAGAAACGATACAATG+AGG | + | chr1_3:9809703-9809722 | Msa0102910:CDS | 35.0% | |
ACGATACAATGAGGTTAGAA+TGG | + | chr1_3:9809712-9809731 | Msa0102910:intron | 35.0% | |
TCATATAGCTATGAGCTTAC+TGG | + | chr1_3:9809906-9809925 | Msa0102910:CDS | 35.0% | |
!! | CTTGGTGGTGCTATTTATAA+AGG | + | chr1_3:9810162-9810181 | Msa0102910:intron | 35.0% |
TGTAGACATGTCAAGAAAAG+AGG | - | chr1_3:9810420-9810439 | None:intergenic | 35.0% | |
TATCTTTGTCCAGAAAGGAA+TGG | + | chr1_3:9810642-9810661 | Msa0102910:CDS | 35.0% | |
!!! | ACACCCTCCTTTTTTTTTAC+CGG | + | chr1_3:9810955-9810974 | Msa0102910:intron | 35.0% |
! | GAAATAAAGAGTACATAGGG+TGG | - | chr1_3:9810998-9811017 | None:intergenic | 35.0% |
TTTCATTGAAAGAGGTAGTG+TGG | + | chr1_3:9811167-9811186 | Msa0102910:intron | 35.0% | |
TTCAGAATAAGCTGAACCTA+TGG | + | chr1_3:9811345-9811364 | Msa0102910:intron | 35.0% | |
TCAGAATAAGCTGAACCTAT+GGG | + | chr1_3:9811346-9811365 | Msa0102910:intron | 35.0% | |
! | CTAGAACATTTAGTTCCCAT+AGG | - | chr1_3:9811364-9811383 | None:intergenic | 35.0% |
ATGTTCTAGTCAGTCAATTC+TGG | + | chr1_3:9811375-9811394 | Msa0102910:intron | 35.0% | |
TCATTCTACTGAATGAAGTG+AGG | + | chr1_3:9811605-9811624 | Msa0102910:intron | 35.0% | |
!! | TTCTAATAAAAAGCACCGGA+GGG | - | chr1_3:9811700-9811719 | None:intergenic | 35.0% |
!! | TTTCTAATAAAAAGCACCGG+AGG | - | chr1_3:9811701-9811720 | None:intergenic | 35.0% |
CTTCAAGCATACTTGAAACT+TGG | - | chr1_3:9811771-9811790 | None:intergenic | 35.0% | |
ATTACTCTCTAAATTGCAGG+TGG | + | chr1_3:9812018-9812037 | Msa0102910:intron | 35.0% | |
! | AAAATTTGATGACTGCAGTG+AGG | - | chr1_3:9812195-9812214 | None:intergenic | 35.0% |
ATTTCTGTCTTGCTTCTTTG+TGG | + | chr1_3:9812797-9812816 | Msa0102910:intron | 35.0% | |
TTGTGAAATTTCAGGCTGTT+AGG | + | chr1_3:9812835-9812854 | Msa0102910:intron | 35.0% | |
AAATTTCAGGCTGTTAGGAT+TGG | + | chr1_3:9812840-9812859 | Msa0102910:intron | 35.0% | |
! | TTGGTGATTTAGAGCTCTTT+AGG | + | chr1_3:9812859-9812878 | Msa0102910:CDS | 35.0% |
TTGTCTTAACATGCACAATG+AGG | + | chr1_3:9813208-9813227 | Msa0102910:CDS | 35.0% | |
AGAAAGAAATTGCTGAGAAG+CGG | + | chr1_3:9813270-9813289 | Msa0102910:CDS | 35.0% | |
TTATCTTACCAATTGCTGTC+AGG | + | chr1_3:9813382-9813401 | Msa0102910:three_prime_UTR | 35.0% | |
AATACCATCTTTGTGAAACG+TGG | + | chr1_3:9813451-9813470 | Msa0102910:three_prime_UTR | 35.0% | |
ATACCATCTTTGTGAAACGT+GGG | + | chr1_3:9813452-9813471 | Msa0102910:three_prime_UTR | 35.0% | |
CCAATGCAACTACAACCAAT+GGG | - | chr1_3:9807661-9807680 | None:intergenic | 40.0% | |
ACCAATGCAACTACAACCAA+TGG | - | chr1_3:9807662-9807681 | None:intergenic | 40.0% | |
TTACTACGTTGCAATGTGGA+AGG | - | chr1_3:9807849-9807868 | None:intergenic | 40.0% | |
AGAGTTACTACGTTGCAATG+TGG | - | chr1_3:9807853-9807872 | None:intergenic | 40.0% | |
TTTGCGAACTTCCTTCAAGT+TGG | - | chr1_3:9807988-9808007 | None:intergenic | 40.0% | |
TCAAGGAAAGAAGAGAGAAC+AGG | - | chr1_3:9808062-9808081 | None:intergenic | 40.0% | |
GAAGATAAGGTAGAATGAGG+AGG | - | chr1_3:9808095-9808114 | None:intergenic | 40.0% | |
AGAGGCTAAGATTGGAGAAA+AGG | - | chr1_3:9808150-9808169 | None:intergenic | 40.0% | |
TACTCACAATGTCCTTAACC+TGG | + | chr1_3:9808192-9808211 | Msa0102910:intron | 40.0% | |
ACTTGTGCTATACACACCTA+GGG | + | chr1_3:9808748-9808767 | Msa0102910:intron | 40.0% | |
CCAATAAGCCAATCCAAAAC+AGG | - | chr1_3:9808774-9808793 | None:intergenic | 40.0% | |
!!! | CCTGTTTTGGATTGGCTTAT+TGG | + | chr1_3:9808771-9808790 | Msa0102910:intron | 40.0% |
CAAAAAGGCTTCAAAACGTG+CGG | + | chr1_3:9808971-9808990 | Msa0102910:intron | 40.0% | |
!! | TAAGCGTATGTTTGGTTCTG+CGG | + | chr1_3:9809123-9809142 | Msa0102910:intron | 40.0% |
CCCTGTTAGGATAAACATGT+TGG | - | chr1_3:9809364-9809383 | None:intergenic | 40.0% | |
GTTCCTATCAAAAACGCTAC+TGG | + | chr1_3:9809415-9809434 | Msa0102910:intron | 40.0% | |
! | TCTCCAGTAGCGTTTTTGAT+AGG | - | chr1_3:9809421-9809440 | None:intergenic | 40.0% |
GTATCATTTGTCAAAGGCAG+TGG | - | chr1_3:9809491-9809510 | None:intergenic | 40.0% | |
ATAGGATGGTGATCATGAGA+TGG | + | chr1_3:9809580-9809599 | Msa0102910:intron | 40.0% | |
TTGAAAAGCTGCAGATGTTG+CGG | - | chr1_3:9809615-9809634 | None:intergenic | 40.0% | |
! | CAATCAGAAAAAGAAGCACG+AGG | - | chr1_3:9809685-9809704 | None:intergenic | 40.0% |
GAGATCTTGCTGAAATTCGA+GGG | + | chr1_3:9809928-9809947 | Msa0102910:CDS | 40.0% | |
GATCATATAGGTTGTAGTGG+AGG | - | chr1_3:9810256-9810275 | None:intergenic | 40.0% | |
CCTGATCATATAGGTTGTAG+TGG | - | chr1_3:9810259-9810278 | None:intergenic | 40.0% | |
CCACTACAACCTATATGATC+AGG | + | chr1_3:9810256-9810275 | Msa0102910:CDS | 40.0% | |
ACTTCTCTGCCTGATCATAT+AGG | - | chr1_3:9810268-9810287 | None:intergenic | 40.0% | |
TTTGAATGTGCCTCAAATCG+TGG | - | chr1_3:9810305-9810324 | None:intergenic | 40.0% | |
GATCAACACAATATACCTGC+TGG | - | chr1_3:9810328-9810347 | None:intergenic | 40.0% | |
TCTTCTACCTCGGGAAAATT+CGG | + | chr1_3:9810473-9810492 | Msa0102910:CDS | 40.0% | |
GAAAATTCGGACCATTCAGT+TGG | + | chr1_3:9810486-9810505 | Msa0102910:CDS | 40.0% | |
ATCGGTATACTCCAACTGAA+TGG | - | chr1_3:9810500-9810519 | None:intergenic | 40.0% | |
!! | TTTTGGGAGAAATTCCTGAG+AGG | + | chr1_3:9810617-9810636 | Msa0102910:CDS | 40.0% |
AGGACTATCTTTGTCCAGAA+AGG | + | chr1_3:9810637-9810656 | Msa0102910:CDS | 40.0% | |
AAGCTTTCTCCATTCCTTTC+TGG | - | chr1_3:9810654-9810673 | None:intergenic | 40.0% | |
AAGGAATGGAGAAAGCTTTG+AGG | + | chr1_3:9810656-9810675 | Msa0102910:CDS | 40.0% | |
GGTGTATGTGTCGAAAAGTT+TGG | - | chr1_3:9810940-9810959 | None:intergenic | 40.0% | |
! | GCACCGGTAAAAAAAAAGGA+GGG | - | chr1_3:9810961-9810980 | None:intergenic | 40.0% |
!! | CAAGGCACCGGTAAAAAAAA+AGG | - | chr1_3:9810965-9810984 | None:intergenic | 40.0% |
TAGGGTGGAATAATGTAGCA+AGG | - | chr1_3:9810983-9811002 | None:intergenic | 40.0% | |
AATGCAGCACCTAAACTTCT+TGG | - | chr1_3:9811139-9811158 | None:intergenic | 40.0% | |
!! | ATTTGGCTTTGCCAGAATGT+AGG | + | chr1_3:9811225-9811244 | Msa0102910:intron | 40.0% |
! | GTTTCAATTGGCCTACATTC+TGG | - | chr1_3:9811239-9811258 | None:intergenic | 40.0% |
CTGTTATGAAATACTCCCTC+CGG | + | chr1_3:9811682-9811701 | Msa0102910:intron | 40.0% | |
TTTCTTGTATAAAGGACCGG+AGG | + | chr1_3:9811969-9811988 | Msa0102910:intron | 40.0% | |
TTCTTGTATAAAGGACCGGA+GGG | + | chr1_3:9811970-9811989 | Msa0102910:intron | 40.0% | |
TGTGTATATTCTACTCCCTC+CGG | - | chr1_3:9811988-9812007 | None:intergenic | 40.0% | |
CTAGTCCCTGTAGTATATTG+TGG | + | chr1_3:9812496-9812515 | Msa0102910:intron | 40.0% | |
GCTACTACTTTCAGTACAGA+CGG | + | chr1_3:9812900-9812919 | Msa0102910:CDS | 40.0% | |
GATTGCGTCATAATGTCATC+AGG | + | chr1_3:9812943-9812962 | Msa0102910:CDS | 40.0% | |
ATCATATTCTCGCATCTCAC+TGG | + | chr1_3:9812989-9813008 | Msa0102910:CDS | 40.0% | |
ATGCTTTCAGCATCAGCAAT+GGG | - | chr1_3:9813053-9813072 | None:intergenic | 40.0% | |
AATGCTTTCAGCATCAGCAA+TGG | - | chr1_3:9813054-9813073 | None:intergenic | 40.0% | |
ATATCAAAGGCTATCCGTGA+TGG | + | chr1_3:9813074-9813093 | Msa0102910:CDS | 40.0% | |
TATCAAAGGCTATCCGTGAT+GGG | + | chr1_3:9813075-9813094 | Msa0102910:CDS | 40.0% | |
CATTGGATCATGCTAATGGA+TGG | + | chr1_3:9813111-9813130 | Msa0102910:CDS | 40.0% | |
CTAGAATTAAAGGCCAACTG+AGG | - | chr1_3:9813179-9813198 | None:intergenic | 40.0% | |
!! | CTCAGTTGGCCTTTAATTCT+AGG | + | chr1_3:9813177-9813196 | Msa0102910:CDS | 40.0% |
GATAAACATGAGGGAGCAAA+TGG | - | chr1_3:9813414-9813433 | None:intergenic | 40.0% | |
TCTCCACACGATAAACATGA+GGG | - | chr1_3:9813423-9813442 | None:intergenic | 40.0% | |
TTCTCCACACGATAAACATG+AGG | - | chr1_3:9813424-9813443 | None:intergenic | 40.0% | |
AAACCCACGTTTCACAAAGA+TGG | - | chr1_3:9813458-9813477 | None:intergenic | 40.0% | |
! | ACGTGGGTTTACCTTTTAGA+TGG | + | chr1_3:9813468-9813487 | Msa0102910:three_prime_UTR | 40.0% |
TCAGGGATCTTCCATCTAAA+AGG | - | chr1_3:9813482-9813501 | None:intergenic | 40.0% | |
GGCGTAATATGTTGTTCTGT+CGG | + | chr1_3:9813656-9813675 | Msa0102910:three_prime_UTR | 40.0% | |
! | CCCATTGGTTGTAGTTGCAT+TGG | + | chr1_3:9807658-9807677 | Msa0102910:five_prime_UTR | 45.0% |
TTCTTCGAACCCTAATACGG+TGG | - | chr1_3:9807761-9807780 | None:intergenic | 45.0% | |
CGTTGCAATGTGGAAGGAAT+AGG | - | chr1_3:9807843-9807862 | None:intergenic | 45.0% | |
! | CGAAACTGGTTCCAACTTGA+AGG | + | chr1_3:9807974-9807993 | Msa0102910:CDS | 45.0% |
TGGACCTTAACGCCATAGTA+AGG | - | chr1_3:9808028-9808047 | None:intergenic | 45.0% | |
GAAAGAAGAGAGAACAGGAG+CGG | - | chr1_3:9808057-9808076 | None:intergenic | 45.0% | |
GAGGAGGAAGAACATGATCA+AGG | - | chr1_3:9808079-9808098 | None:intergenic | 45.0% | |
CACTTGTGCTATACACACCT+AGG | + | chr1_3:9808747-9808766 | Msa0102910:intron | 45.0% | |
TAAGCCTATGTTTGGCTGTG+CGG | + | chr1_3:9808865-9808884 | Msa0102910:intron | 45.0% | |
! | GAAGCCTTTTTGCCGTGATT+TGG | - | chr1_3:9808963-9808982 | None:intergenic | 45.0% |
! | TGTGTGTTTGGTTCGACTTC+TGG | - | chr1_3:9809341-9809360 | None:intergenic | 45.0% |
TGGTGATCATGAGATGGAAG+TGG | + | chr1_3:9809586-9809605 | Msa0102910:CDS | 45.0% | |
!! | GTTCCTCAGCTAGCATTGAT+CGG | + | chr1_3:9809823-9809842 | Msa0102910:CDS | 45.0% |
GGAGATCTTGCTGAAATTCG+AGG | + | chr1_3:9809927-9809946 | Msa0102910:CDS | 45.0% | |
CTGAAATTCGAGGGTGAGTT+GGG | + | chr1_3:9809937-9809956 | Msa0102910:intron | 45.0% | |
AATCCGGTGCAACTGAAAGA+GGG | - | chr1_3:9810097-9810116 | None:intergenic | 45.0% | |
ATGATCAGGCAGAGAAGTTG+AGG | + | chr1_3:9810270-9810289 | Msa0102910:CDS | 45.0% | |
TGTCGCTATCTCTTCTACCT+CGG | + | chr1_3:9810463-9810482 | Msa0102910:CDS | 45.0% | |
! | CAGGAGAGACTCTTTTGCAT+CGG | - | chr1_3:9810518-9810537 | None:intergenic | 45.0% |
TGGACAAAGATAGTCCTCTC+AGG | - | chr1_3:9810634-9810653 | None:intergenic | 45.0% | |
TCGATCACATGACTCATGAC+TGG | + | chr1_3:9810904-9810923 | Msa0102910:intron | 45.0% | |
GTCGAAAAGTTTGGCTACAC+CGG | - | chr1_3:9810931-9810950 | None:intergenic | 45.0% | |
!! | GGCACCGGTAAAAAAAAAGG+AGG | - | chr1_3:9810962-9810981 | None:intergenic | 45.0% |
GGAATAATGTAGCAAGGCAC+CGG | - | chr1_3:9810977-9810996 | None:intergenic | 45.0% | |
CTGGCAAAGCCAAATGACAA+AGG | - | chr1_3:9811220-9811239 | None:intergenic | 45.0% | |
TGTTGGATAATAGCCCCAAC+TGG | + | chr1_3:9811420-9811439 | Msa0102910:intron | 45.0% | |
GATCACAAAACGACCAGTTG+GGG | - | chr1_3:9811436-9811455 | None:intergenic | 45.0% | |
GGATCACAAAACGACCAGTT+GGG | - | chr1_3:9811437-9811456 | None:intergenic | 45.0% | |
TGGATCACAAAACGACCAGT+TGG | - | chr1_3:9811438-9811457 | None:intergenic | 45.0% | |
CGTCATAATGTCATCAGGAC+TGG | + | chr1_3:9812948-9812967 | Msa0102910:CDS | 45.0% | |
CCTCAACTTCTGAGCTACAT+CGG | - | chr1_3:9813015-9813034 | None:intergenic | 45.0% | |
ATCAAAGGCTATCCGTGATG+GGG | + | chr1_3:9813076-9813095 | Msa0102910:CDS | 45.0% | |
GCGACATTGGATCATGCTAA+TGG | + | chr1_3:9813107-9813126 | Msa0102910:CDS | 45.0% | |
! | GGATCATGCTAATGGATGGA+TGG | + | chr1_3:9813115-9813134 | Msa0102910:CDS | 45.0% |
! | TAATGGATGGATGGTGTCCA+AGG | + | chr1_3:9813124-9813143 | Msa0102910:CDS | 45.0% |
TGGATGGTGTCCAAGGAAAT+TGG | + | chr1_3:9813131-9813150 | Msa0102910:CDS | 45.0% | |
CTCTACAAATGAGCCTCAGT+TGG | + | chr1_3:9813163-9813182 | Msa0102910:CDS | 45.0% | |
AGAGCTGGCAAAGCATATTG+AGG | + | chr1_3:9813316-9813335 | Msa0102910:CDS | 45.0% | |
AGTGTGGGATACGAAGACGA+TGG | - | chr1_3:9807738-9807757 | None:intergenic | 50.0% | |
ATCCCACACTCCACCGTATT+AGG | + | chr1_3:9807748-9807767 | Msa0102910:five_prime_UTR | 50.0% | |
TCCCACACTCCACCGTATTA+GGG | + | chr1_3:9807749-9807768 | Msa0102910:five_prime_UTR | 50.0% | |
ACCCTAATACGGTGGAGTGT+GGG | - | chr1_3:9807753-9807772 | None:intergenic | 50.0% | |
AACCCTAATACGGTGGAGTG+TGG | - | chr1_3:9807754-9807773 | None:intergenic | 50.0% | |
TGCGCCTTACTATGGCGTTA+AGG | + | chr1_3:9808021-9808040 | Msa0102910:CDS | 50.0% | |
! | TACACACCTAGGGCCTGTTT+TGG | + | chr1_3:9808758-9808777 | Msa0102910:intron | 50.0% |
!! | ACCTAGGGCCTGTTTTGGAT+TGG | + | chr1_3:9808763-9808782 | Msa0102910:intron | 50.0% |
!!! | GCTGGGATTTTGGCTTGATG+TGG | - | chr1_3:9808899-9808918 | None:intergenic | 50.0% |
CATCAAGCCAAAATCCCAGC+AGG | + | chr1_3:9808899-9808918 | Msa0102910:intron | 50.0% | |
! | GTGAGTTCCTGCTGGGATTT+TGG | - | chr1_3:9808909-9808928 | None:intergenic | 50.0% |
TGCAAACGTGAGTTCCTGCT+GGG | - | chr1_3:9808916-9808935 | None:intergenic | 50.0% | |
! | GTGTTTGGTTCGACTTCTGG+AGG | - | chr1_3:9809338-9809357 | None:intergenic | 50.0% |
GCTAGCTGAGGAACAAGCTT+TGG | - | chr1_3:9809817-9809836 | None:intergenic | 50.0% | |
GCTGAAATTCGAGGGTGAGT+TGG | + | chr1_3:9809936-9809955 | Msa0102910:intron | 50.0% | |
CAATCCGGTGCAACTGAAAG+AGG | - | chr1_3:9810098-9810117 | None:intergenic | 50.0% | |
CAACCTGACCAAGCTCATCA+TGG | - | chr1_3:9810131-9810150 | None:intergenic | 50.0% | |
CATGATGAGCTTGGTCAGGT+TGG | + | chr1_3:9810129-9810148 | Msa0102910:intron | 50.0% | |
!! | CAGGTTGGTGTTGACTTGCT+TGG | + | chr1_3:9810144-9810163 | Msa0102910:intron | 50.0% |
!! | GTTGGTGTTGACTTGCTTGG+TGG | + | chr1_3:9810147-9810166 | Msa0102910:intron | 50.0% |
! | CTTACCTGGTGATGTCATGC+AGG | + | chr1_3:9810199-9810218 | Msa0102910:intron | 50.0% |
GTTTCCTGCATGACATCACC+AGG | - | chr1_3:9810206-9810225 | None:intergenic | 50.0% | |
TGAGGCACATTCAAACCAGC+AGG | + | chr1_3:9810310-9810329 | Msa0102910:CDS | 50.0% | |
GTCGCTATCTCTTCTACCTC+GGG | + | chr1_3:9810464-9810483 | Msa0102910:CDS | 50.0% | |
! | GAATGGTCCGAATTTTCCCG+AGG | - | chr1_3:9810483-9810502 | None:intergenic | 50.0% |
TGCAAAAGAGTCTCTCCTGC+AGG | + | chr1_3:9810519-9810538 | Msa0102910:CDS | 50.0% | |
! | TAAAGCACCAGTTGCAGCAC+AGG | + | chr1_3:9810549-9810568 | Msa0102910:CDS | 50.0% |
! | AAAGCACCAGTTGCAGCACA+GGG | + | chr1_3:9810550-9810569 | Msa0102910:CDS | 50.0% |
! | CACATGACTCATGACTGGTC+CGG | + | chr1_3:9810909-9810928 | Msa0102910:intron | 50.0% |
GGCTGCATAAATAGAGTCCC+AGG | - | chr1_3:9812424-9812443 | None:intergenic | 50.0% | |
ACACTTTCTACCTTGCCTGC+AGG | + | chr1_3:9812473-9812492 | Msa0102910:intron | 50.0% | |
TCAGGTGCATCTCAACAGCA+TGG | - | chr1_3:9812593-9812612 | None:intergenic | 50.0% | |
ATGCTGTTGAGATGCACCTG+AGG | + | chr1_3:9812592-9812611 | Msa0102910:intron | 50.0% | |
TGCTGTTGAGATGCACCTGA+GGG | + | chr1_3:9812593-9812612 | Msa0102910:intron | 50.0% | |
CCGATGTAGCTCAGAAGTTG+AGG | + | chr1_3:9813012-9813031 | Msa0102910:CDS | 50.0% | |
TCGCATCAATTGCCCCATCA+CGG | - | chr1_3:9813091-9813110 | None:intergenic | 50.0% | |
TGGGGCAATTGATGCGACAT+TGG | + | chr1_3:9813094-9813113 | Msa0102910:CDS | 50.0% | |
GCAACAACAAGAGCAAGAGC+TGG | + | chr1_3:9813301-9813320 | Msa0102910:CDS | 50.0% | |
GCTGGCAAAGCATATTGAGG+AGG | + | chr1_3:9813319-9813338 | Msa0102910:CDS | 50.0% | |
GGAGAGATCCTGACAGCAAT+TGG | - | chr1_3:9813393-9813412 | None:intergenic | 50.0% | |
GCTCCCTCATGTTTATCGTG+TGG | + | chr1_3:9813417-9813436 | Msa0102910:three_prime_UTR | 50.0% | |
TCGTGCAGTGCGCCTTACTA+TGG | + | chr1_3:9808013-9808032 | Msa0102910:CDS | 55.0% | |
GAGAACAGGAGCGGTGAGTT+TGG | - | chr1_3:9808048-9808067 | None:intergenic | 55.0% | |
GCCAATCCAAAACAGGCCCT+AGG | - | chr1_3:9808767-9808786 | None:intergenic | 55.0% | |
CTGCAAACGTGAGTTCCTGC+TGG | - | chr1_3:9808917-9808936 | None:intergenic | 55.0% | |
ACTCAATTGGGGGCCCTGTT+AGG | - | chr1_3:9809377-9809396 | None:intergenic | 55.0% | |
! | TCCAGCCAAGCACTTGTTGC+CGG | + | chr1_3:9809637-9809656 | Msa0102910:CDS | 55.0% |
TAGCTCCGGCAACAAGTGCT+TGG | - | chr1_3:9809645-9809664 | None:intergenic | 55.0% | |
GAGCCGATCAATGCTAGCTG+AGG | - | chr1_3:9809829-9809848 | None:intergenic | 55.0% | |
GCACCCTCTTTCAGTTGCAC+CGG | + | chr1_3:9810091-9810110 | Msa0102910:intron | 55.0% | |
CATGGCGCAAGGTAGCAATC+CGG | - | chr1_3:9810113-9810132 | None:intergenic | 55.0% | |
ACCTTGCGCCATGATGAGCT+TGG | + | chr1_3:9810120-9810139 | Msa0102910:CDS | 55.0% | |
ACCAAGCTCATCATGGCGCA+AGG | - | chr1_3:9810124-9810143 | None:intergenic | 55.0% | |
GGCAGAGAAGTTGAGGTCGA+AGG | + | chr1_3:9810277-9810296 | Msa0102910:CDS | 55.0% | |
GTCGAAGGCTCCACGATTTG+AGG | + | chr1_3:9810292-9810311 | Msa0102910:CDS | 55.0% | |
CGAAAACCCTGTGCTGCAAC+TGG | - | chr1_3:9810559-9810578 | None:intergenic | 55.0% | |
!! | TACTACAGGGACTAGCCTGC+AGG | - | chr1_3:9812491-9812510 | None:intergenic | 55.0% |
TTGCTGAGAAGCGGAGAGAG+AGG | + | chr1_3:9813279-9813298 | Msa0102910:CDS | 55.0% | |
GGCACCGCACAGCCAAACAT+AGG | - | chr1_3:9808872-9808891 | None:intergenic | 60.0% | |
TCCGGCAACAAGTGCTTGGC+TGG | - | chr1_3:9809641-9809660 | None:intergenic | 60.0% | |
GCGCCATGATGAGCTTGGTC+AGG | + | chr1_3:9810125-9810144 | Msa0102910:CDS | 60.0% | |
GTGCTTTACGAGCAGCCTGC+AGG | - | chr1_3:9810537-9810556 | None:intergenic | 60.0% | |
!! | CAGGGACTAGCCTGCAGGCA+AGG | - | chr1_3:9812486-9812505 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 9807620 | 9813777 | 9807620 | ID=Msa0102910;Name=Msa0102910 |
chr1_3 | mRNA | 9807620 | 9813777 | 9807620 | ID=Msa0102910-mRNA-1;Parent=Msa0102910;Name=Msa0102910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|0.85|0.87|1|1|1|8|413|486 |
chr1_3 | exon | 9807620 | 9807864 | 9807620 | ID=Msa0102910-mRNA-1:exon:4021;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9807949 | 9808133 | 9807949 | ID=Msa0102910-mRNA-1:exon:4022;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9809584 | 9809724 | 9809584 | ID=Msa0102910-mRNA-1:exon:4023;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9809813 | 9809949 | 9809813 | ID=Msa0102910-mRNA-1:exon:4024;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9810092 | 9810146 | 9810092 | ID=Msa0102910-mRNA-1:exon:4025;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9810221 | 9810331 | 9810221 | ID=Msa0102910-mRNA-1:exon:4026;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9810460 | 9810699 | 9810460 | ID=Msa0102910-mRNA-1:exon:4027;Parent=Msa0102910-mRNA-1 |
chr1_3 | exon | 9812849 | 9813777 | 9812849 | ID=Msa0102910-mRNA-1:exon:4028;Parent=Msa0102910-mRNA-1 |
chr1_3 | five_prime_UTR | 9807620 | 9807788 | 9807620 | ID=Msa0102910-mRNA-1:five_prime_utr;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9807789 | 9807864 | 9807789 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9807949 | 9808133 | 9807949 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9809584 | 9809724 | 9809584 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9809813 | 9809949 | 9809813 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9810092 | 9810146 | 9810092 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9810221 | 9810331 | 9810221 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9810460 | 9810699 | 9810460 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | CDS | 9812849 | 9813364 | 9812849 | ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1 |
chr1_3 | three_prime_UTR | 9813365 | 9813777 | 9813365 | ID=Msa0102910-mRNA-1:three_prime_utr;Parent=Msa0102910-mRNA-1 |
Gene Sequence |
Protein sequence |