AlfalfaGEDB | Msa0102910

M. sativa cultivar zhongmu-4 / Msa0102910

KEGG: K03033
GO: GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369
PFAM: PF01399.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102910	XP_003589555.1	96.502	486	14	2	1	486	1	483	0.0	956

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102910	sp\|Q9LNU4\|PSD3A_ARATH	80.164	489	90	3	1	484	1	487	0.0	758

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102910	G7I8C5	96.502	486	14	2	1	486	1	483	0.0	956

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0057850	Msa0102910	0.941725	2.520776e-101	-8.615850e-47
Msa0102910	Msa1218610	0.806001	1.016846e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102910	MtrunA17_Chr1g0157071	96.502	486	14	2	1	486	1	483	0.0	956
Msa0102910	MtrunA17_Chr3g0143291	85.598	493	58	6	1	484	1	489	0.0	806

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102910	AT1G20200.1	80.164	489	90	3	1	484	1	487	0.0	758
Msa0102910	AT1G75990.1	77.914	489	100	4	1	484	1	486	0.0	734

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Find 140 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCACGTTTCACAAAGA+TGG	0.558815	1_3:-9813455	None:intergenic
AAAGCACCAGTTGCAGCACA+GGG	0.621042	1_3:+9810550	Msa0102910:CDS
AAAGGCAATCCTAGAATTAA+AGG	0.262839	1_3:-9813186	None:intergenic
AAATAAATAGTGAATATTTC+AGG	0.220254	1_3:-9813497	None:intergenic
AAATTTCAGGCTGTTAGGAT+TGG	0.549112	1_3:+9812840	Msa0102910:intron
AACCCTAATACGGTGGAGTG+TGG	0.563050	1_3:-9807751	None:intergenic
AAGCTTTCTCCATTCCTTTC+TGG	0.122328	1_3:-9810651	None:intergenic
AAGGAATGGAGAAAGCTTTG+AGG	0.498396	1_3:+9810656	Msa0102910:CDS
AATAAATAGTGAATATTTCA+GGG	0.469255	1_3:-9813496	None:intergenic
AATACCATCTTTGTGAAACG+TGG	0.565186	1_3:+9813451	Msa0102910:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAATTAGTGAAAAGCCCAT+TGG	+	chr1_3:9807643-9807662	Msa0102910:five_prime_UTR	30.0%
TAAATGAAAGTGAGAGAAAG+TGG	-	chr1_3:9807895-9807914	None:intergenic	30.0%
TAAGAAGATAAGGTAGAATG+AGG	-	chr1_3:9808098-9808117	None:intergenic	30.0%
AATGGGAAGATAAGAAGATA+AGG	-	chr1_3:9808108-9808127	None:intergenic	30.0%
TTCTTATCTTCCCATTTCAA+AGG	+	chr1_3:9808112-9808131	Msa0102910:CDS	30.0%
ATAAGGTGAAATCTAAAGAG+AGG	-	chr1_3:9808168-9808187	None:intergenic	30.0%
AAGCTTATGAAAATGGTCAT+GGG	-	chr1_3:9808307-9808326	None:intergenic	30.0%
AAAGCTTATGAAAATGGTCA+TGG	-	chr1_3:9808308-9808327	None:intergenic	30.0%
CATAACCATGTATAGCATAA+AGG	-	chr1_3:9808509-9808528	None:intergenic	30.0%
TATGATATACTCAGCTTATG+TGG	+	chr1_3:9808525-9808544	Msa0102910:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	9807620	9813777	9807620	ID=Msa0102910;Name=Msa0102910
chr1_3	mRNA	9807620	9813777	9807620	ID=Msa0102910-mRNA-1;Parent=Msa0102910;Name=Msa0102910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169\|0.85\|0.87\|1\|1\|1\|8\|413\|486
chr1_3	exon	9807620	9807864	9807620	ID=Msa0102910-mRNA-1:exon:4021;Parent=Msa0102910-mRNA-1
chr1_3	exon	9807949	9808133	9807949	ID=Msa0102910-mRNA-1:exon:4022;Parent=Msa0102910-mRNA-1
chr1_3	exon	9809584	9809724	9809584	ID=Msa0102910-mRNA-1:exon:4023;Parent=Msa0102910-mRNA-1
chr1_3	exon	9809813	9809949	9809813	ID=Msa0102910-mRNA-1:exon:4024;Parent=Msa0102910-mRNA-1
chr1_3	exon	9810092	9810146	9810092	ID=Msa0102910-mRNA-1:exon:4025;Parent=Msa0102910-mRNA-1
chr1_3	exon	9810221	9810331	9810221	ID=Msa0102910-mRNA-1:exon:4026;Parent=Msa0102910-mRNA-1
chr1_3	exon	9810460	9810699	9810460	ID=Msa0102910-mRNA-1:exon:4027;Parent=Msa0102910-mRNA-1
chr1_3	exon	9812849	9813777	9812849	ID=Msa0102910-mRNA-1:exon:4028;Parent=Msa0102910-mRNA-1
chr1_3	five_prime_UTR	9807620	9807788	9807620	ID=Msa0102910-mRNA-1:five_prime_utr;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9807789	9807864	9807789	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9807949	9808133	9807949	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9809584	9809724	9809584	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9809813	9809949	9809813	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9810092	9810146	9810092	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9810221	9810331	9810221	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9810460	9810699	9810460	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	CDS	9812849	9813364	9812849	ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3	three_prime_UTR	9813365	9813777	9813365	ID=Msa0102910-mRNA-1:three_prime_utr;Parent=Msa0102910-mRNA-1

Gene Sequence

>Msa0102910

ATGACTCAAGAAGAAGAGATGACAGATCGTCCAATACCTTCTCAATCTATTCCTATTCCTTCCACATTGCAACGTAATTTGAAGGATATAACATCGATCATCGAAACTGGTTCCAACTTGAAGGAAGTTCGCAAAATATCTCGTGCAGTGCGCCTTACTATGGCGTTAAGGTCCAAACTCACCGCTCCTGTTCTCTCTTCTTTCCTTGATCATGTTCTTCCTCCTCATTCTACCTTATCTTCTTATCTTCCCATTTCAAAGGATGGTGATCATGAGATGGAAGTGGACACCGCAACATCTGCAGCTTTTCAAACTCCAGCCAAGCACTTGTTGCCGGAGCTAGAAATCTACTGTTACTTCCTCGTGCTTCTTTTTCTGATTGATCAGAAACGATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGATCGGCTCAAGAACTTGAATAGAAGAACTGTTGATGTTATTGCTTCGAGACTGTACTTTTATTACTCATATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGAGGCACCCTCTTTCAGTTGCACCGGATTGCTACCTTGCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCGAAGGCTCCACGATTTGAGGCACATTCAAACCAGCAGTTCTGTCGCTATCTCTTCTACCTCGGGAAAATTCGGACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAGGGTTTTCGAATTCAGTGTAACAAATGGGCCATTATAGTTCGTTTACTTTTGGGAGAAATTCCTGAGAGGACTATCTTTGTCCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTTAGGATTGGTGATTTAGAGCTCTTTAGGAATGTTGCAGAGAAGTATGCTACTACTTTCAGTACAGACGGAACCAATAATTTGATCGTTCGATTGCGTCATAATGTCATCAGGACTGGTTTGCGTAACATCAGTATATCATATTCTCGCATCTCACTGGCCGATGTAGCTCAGAAGTTGAGGTTGAGCTCTGCAGATCCCATTGCTGATGCTGAAAGCATTATATCAAAGGCTATCCGTGATGGGGCAATTGATGCGACATTGGATCATGCTAATGGATGGATGGTGTCCAAGGAAATTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGTTTTCCAAAAAACACACATAAAGAGAAAGAAATTGCTGAGAAGCGGAGAGAGAGGCAACAACAAGAGCAAGAGCTGGCAAAGCATATTGAGGAGGAAGATGATGATGATGACTTCTGA

Protein sequence

>Msa0102910

MTQEEEMTDRPIPSQSIPIPSTLQRNLKDITSIIETGSNLKEVRKISRAVRLTMALRSKLTAPVLSSFLDHVLPPHSTLSSYLPISKDGDHEMEVDTATSAAFQTPAKHLLPELEIYCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGTLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFSTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANGWMVSKEIGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF*