AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102910 MtrunA17_Chr1g0157071 96.502 486 14 2 1 486 1 483 0.0 956
Msa0102910 MtrunA17_Chr3g0143291 85.598 493 58 6 1 484 1 489 0.0 806
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102910 AT1G20200.1 80.164 489 90 3 1 484 1 487 0.0 758
Msa0102910 AT1G75990.1 77.914 489 100 4 1 484 1 486 0.0 734

Find 140 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCTTTCTCCATTCCTTTC+TGG 0.122328 1_3:-9810651 None:intergenic
GGTAGATTTAACAATTAATT+AGG 0.148114 1_3:+9807606 None:intergenic
CATTATAGTTCGTTTACTTT+TGG 0.198744 1_3:+9810600 Msa0102910:CDS
CTCAGTTGGCCTTTAATTCT+AGG 0.207279 1_3:+9813177 Msa0102910:CDS
ATCCCACACTCCACCGTATT+AGG 0.208516 1_3:+9807748 Msa0102910:five_prime_UTR
CAATCGAACGATCAAATTAT+TGG 0.209366 1_3:-9812925 None:intergenic
AAATAAATAGTGAATATTTC+AGG 0.220254 1_3:-9813497 None:intergenic
AAAGGCAATCCTAGAATTAA+AGG 0.262839 1_3:-9813186 None:intergenic
GAGAACAGGAGCGGTGAGTT+TGG 0.272838 1_3:-9808045 None:intergenic
TCAGGGATCTTCCATCTAAA+AGG 0.273199 1_3:-9813479 None:intergenic
TTGGTGATTTAGAGCTCTTT+AGG 0.313974 1_3:+9812859 Msa0102910:CDS
GTTTCACAAAGATGGTATTA+AGG 0.331812 1_3:-9813447 None:intergenic
TCATATAGCTATGAGCTTAC+TGG 0.344076 1_3:+9809906 Msa0102910:CDS
TTGTGAAATTTCAGGCTGTT+AGG 0.344302 1_3:+9812835 Msa0102910:intron
ATAATTAATTACCTTTGAAA+TGG 0.347909 1_3:-9808123 None:intergenic
CGTTGCAATGTGGAAGGAAT+AGG 0.374583 1_3:-9807840 None:intergenic
GTAGATTTAACAATTAATTA+GGG 0.377176 1_3:+9807607 None:intergenic
CAAAAGTAAACGAACTATAA+TGG 0.378151 1_3:-9810599 None:intergenic
TGGATGGTGTCCAAGGAAAT+TGG 0.379526 1_3:+9813131 Msa0102910:CDS
TCCCACACTCCACCGTATTA+GGG 0.389293 1_3:+9807749 Msa0102910:five_prime_UTR
TCTTCTACCTCGGGAAAATT+CGG 0.395517 1_3:+9810473 Msa0102910:CDS
TCCAGCCAAGCACTTGTTGC+CGG 0.406869 1_3:+9809637 Msa0102910:CDS
ACTTCTCTGCCTGATCATAT+AGG 0.408449 1_3:-9810265 None:intergenic
GTAAATATCTCCAATTTCCT+TGG 0.409981 1_3:-9813141 None:intergenic
TCGTGCAGTGCGCCTTACTA+TGG 0.413530 1_3:+9808013 Msa0102910:CDS
TTCGAATTCAGTGTAACAAA+TGG 0.419716 1_3:+9810575 Msa0102910:CDS
CGAAACTGGTTCCAACTTGA+AGG 0.423263 1_3:+9807974 Msa0102910:CDS
GGAGAGATCCTGACAGCAAT+TGG 0.432817 1_3:-9813390 None:intergenic
TTAGAACGAATGAAAATAAC+GGG 0.436922 1_3:-9813725 None:intergenic
CGAAAACCCTGTGCTGCAAC+TGG 0.443308 1_3:-9810556 None:intergenic
GGAATAGATTGAGAAGGTAT+TGG 0.443551 1_3:-9807819 None:intergenic
ATAACATCGATCATCGAAAC+TGG 0.447341 1_3:+9807960 Msa0102910:CDS
TAATTAATTACCTTTGAAAT+GGG 0.447347 1_3:-9808122 None:intergenic
CCCATTGGTTGTAGTTGCAT+TGG 0.450418 1_3:+9807658 Msa0102910:five_prime_UTR
GCTAGCTGAGGAACAAGCTT+TGG 0.450773 1_3:-9809814 None:intergenic
GCGACATTGGATCATGCTAA+TGG 0.451268 1_3:+9813107 Msa0102910:CDS
TGTCGCTATCTCTTCTACCT+CGG 0.453989 1_3:+9810463 Msa0102910:CDS
TTCTTCTTCGAACCCTAATA+CGG 0.454997 1_3:-9807761 None:intergenic
ATTGTGCATGTTAAGACAAA+AGG 0.457200 1_3:-9813204 None:intergenic
TTATCTTACCAATTGCTGTC+AGG 0.462795 1_3:+9813382 Msa0102910:three_prime_UTR
TCCGGCAACAAGTGCTTGGC+TGG 0.465143 1_3:-9809638 None:intergenic
TTCACTAATTATATATTGCT+AGG 0.467376 1_3:+9813634 Msa0102910:three_prime_UTR
AATAAATAGTGAATATTTCA+GGG 0.469255 1_3:-9813496 None:intergenic
TGGACCTTAACGCCATAGTA+AGG 0.471828 1_3:-9808025 None:intergenic
GTCGCTATCTCTTCTACCTC+GGG 0.471871 1_3:+9810464 Msa0102910:CDS
TAAAGCACCAGTTGCAGCAC+AGG 0.474666 1_3:+9810549 Msa0102910:CDS
TTTAGAACGAATGAAAATAA+CGG 0.481530 1_3:-9813726 None:intergenic
GATAAACATGAGGGAGCAAA+TGG 0.481802 1_3:-9813411 None:intergenic
TTTGCGAACTTCCTTCAAGT+TGG 0.483201 1_3:-9807985 None:intergenic
TAGCTCCGGCAACAAGTGCT+TGG 0.485009 1_3:-9809642 None:intergenic
TTTATTGATTATTTGACGGT+AGG 0.486839 1_3:+9813694 Msa0102910:three_prime_UTR
TCGAATTCAGTGTAACAAAT+GGG 0.489906 1_3:+9810576 Msa0102910:CDS
ACATTAGTAAGTTCAAAGTA+AGG 0.496258 1_3:-9810679 None:intergenic
TTCTTCGAACCCTAATACGG+TGG 0.498358 1_3:-9807758 None:intergenic
AAGGAATGGAGAAAGCTTTG+AGG 0.498396 1_3:+9810656 Msa0102910:CDS
TTCTTATCTTCCCATTTCAA+AGG 0.499141 1_3:+9808112 Msa0102910:CDS
GGAGATCTTGCTGAAATTCG+AGG 0.500197 1_3:+9809927 Msa0102910:CDS
ATCATATTCTCGCATCTCAC+TGG 0.503942 1_3:+9812989 Msa0102910:CDS
ACCAATGCAACTACAACCAA+TGG 0.505481 1_3:-9807659 None:intergenic
GGCGTAATATGTTGTTCTGT+CGG 0.506845 1_3:+9813656 Msa0102910:three_prime_UTR
GTTCCTCAGCTAGCATTGAT+CGG 0.507928 1_3:+9809823 Msa0102910:CDS
TCAAGGAAAGAAGAGAGAAC+AGG 0.509051 1_3:-9808059 None:intergenic
AATGGGAAGATAAGAAGATA+AGG 0.511950 1_3:-9808105 None:intergenic
TAAGAAGATAAGGTAGAATG+AGG 0.511987 1_3:-9808095 None:intergenic
TGCAAAAGAGTCTCTCCTGC+AGG 0.518992 1_3:+9810519 Msa0102910:CDS
GCGCCATGATGAGCTTGGTC+AGG 0.519144 1_3:+9810125 Msa0102910:CDS
GATTGCGTCATAATGTCATC+AGG 0.522018 1_3:+9812943 Msa0102910:CDS
CGTCATAATGTCATCAGGAC+TGG 0.522279 1_3:+9812948 Msa0102910:CDS
TTAATTAGTGAAAAGCCCAT+TGG 0.522570 1_3:+9807643 Msa0102910:five_prime_UTR
CAATCCGGTGCAACTGAAAG+AGG 0.522728 1_3:-9810095 None:intergenic
TATCAAAGGCTATCCGTGAT+GGG 0.525169 1_3:+9813075 Msa0102910:CDS
ATGCTTTCAGCATCAGCAAT+GGG 0.526668 1_3:-9813050 None:intergenic
CCACTACAACCTATATGATC+AGG 0.528458 1_3:+9810256 Msa0102910:CDS
GTGCTTTACGAGCAGCCTGC+AGG 0.528769 1_3:-9810534 None:intergenic
TCACTAATTATATATTGCTA+GGG 0.529252 1_3:+9813635 Msa0102910:three_prime_UTR
TGCGCCTTACTATGGCGTTA+AGG 0.531569 1_3:+9808021 Msa0102910:CDS
CTCTACAAATGAGCCTCAGT+TGG 0.532972 1_3:+9813163 Msa0102910:CDS
GAAAATTCGGACCATTCAGT+TGG 0.533575 1_3:+9810486 Msa0102910:CDS
TGGACAAAGATAGTCCTCTC+AGG 0.539150 1_3:-9810631 None:intergenic
TTGCTGAGAAGCGGAGAGAG+AGG 0.541099 1_3:+9813279 Msa0102910:CDS
TGAGGCACATTCAAACCAGC+AGG 0.543084 1_3:+9810310 Msa0102910:CDS
ATCGGTATACTCCAACTGAA+TGG 0.545584 1_3:-9810497 None:intergenic
CCAATGCAACTACAACCAAT+GGG 0.547766 1_3:-9807658 None:intergenic
AAATTTCAGGCTGTTAGGAT+TGG 0.549112 1_3:+9812840 Msa0102910:intron
TAACAGTAGATTTCTAGCTC+CGG 0.549344 1_3:-9809656 None:intergenic
GAGGAGGAAGAACATGATCA+AGG 0.550308 1_3:-9808076 None:intergenic
GCACCCTCTTTCAGTTGCAC+CGG 0.553574 1_3:+9810091 Msa0102910:intron
ATATCAAAGGCTATCCGTGA+TGG 0.556289 1_3:+9813074 Msa0102910:CDS
AGGACTATCTTTGTCCAGAA+AGG 0.556719 1_3:+9810637 Msa0102910:CDS
TGCTGAAAGCATTATATCAA+AGG 0.557966 1_3:+9813061 Msa0102910:CDS
AAACCCACGTTTCACAAAGA+TGG 0.558815 1_3:-9813455 None:intergenic
AACCCTAATACGGTGGAGTG+TGG 0.563050 1_3:-9807751 None:intergenic
GGAATAGGAATAGATTGAGA+AGG 0.563592 1_3:-9807825 None:intergenic
CCTGATCATATAGGTTGTAG+TGG 0.563760 1_3:-9810256 None:intergenic
GGCAGAGAAGTTGAGGTCGA+AGG 0.564667 1_3:+9810277 Msa0102910:CDS
AATACCATCTTTGTGAAACG+TGG 0.565186 1_3:+9813451 Msa0102910:three_prime_UTR
AGAAAGAAATTGCTGAGAAG+CGG 0.566547 1_3:+9813270 Msa0102910:CDS
GCTCCCTCATGTTTATCGTG+TGG 0.569954 1_3:+9813417 Msa0102910:three_prime_UTR
ACCCTAATACGGTGGAGTGT+GGG 0.571271 1_3:-9807750 None:intergenic
TGGGGCAATTGATGCGACAT+TGG 0.576856 1_3:+9813094 Msa0102910:CDS
GTCGAAGGCTCCACGATTTG+AGG 0.579551 1_3:+9810292 Msa0102910:CDS
ATGATCAGGCAGAGAAGTTG+AGG 0.580498 1_3:+9810270 Msa0102910:CDS
GCAACAACAAGAGCAAGAGC+TGG 0.580630 1_3:+9813301 Msa0102910:CDS
CAACCTGACCAAGCTCATCA+TGG 0.583223 1_3:-9810128 None:intergenic
ACCTTGCGCCATGATGAGCT+TGG 0.585868 1_3:+9810120 Msa0102910:CDS
CCGATGTAGCTCAGAAGTTG+AGG 0.586467 1_3:+9813012 Msa0102910:CDS
AATGCTTTCAGCATCAGCAA+TGG 0.590057 1_3:-9813051 None:intergenic
TGGTGATCATGAGATGGAAG+TGG 0.590531 1_3:+9809586 Msa0102910:CDS
GAAGATAAGGTAGAATGAGG+AGG 0.594335 1_3:-9808092 None:intergenic
TTGTCTTAACATGCACAATG+AGG 0.598440 1_3:+9813208 Msa0102910:CDS
CATGGCGCAAGGTAGCAATC+CGG 0.599609 1_3:-9810110 None:intergenic
TATCTTTGTCCAGAAAGGAA+TGG 0.604027 1_3:+9810642 Msa0102910:CDS
AGAGCTGGCAAAGCATATTG+AGG 0.605558 1_3:+9813316 Msa0102910:CDS
ATAGGATGGTGATCATGAGA+TGG 0.608295 1_3:+9809580 Msa0102910:intron
GCTACTACTTTCAGTACAGA+CGG 0.609313 1_3:+9812900 Msa0102910:CDS
ATACCATCTTTGTGAAACGT+GGG 0.609563 1_3:+9813452 Msa0102910:three_prime_UTR
GAGATCTTGCTGAAATTCGA+GGG 0.610331 1_3:+9809928 Msa0102910:CDS
CATTGGATCATGCTAATGGA+TGG 0.611762 1_3:+9813111 Msa0102910:CDS
ACCAAGCTCATCATGGCGCA+AGG 0.611785 1_3:-9810121 None:intergenic
TCGCATCAATTGCCCCATCA+CGG 0.615331 1_3:-9813088 None:intergenic
CCTCAACTTCTGAGCTACAT+CGG 0.618788 1_3:-9813012 None:intergenic
AAAGCACCAGTTGCAGCACA+GGG 0.621042 1_3:+9810550 Msa0102910:CDS
GCTGGCAAAGCATATTGAGG+AGG 0.622117 1_3:+9813319 Msa0102910:CDS
TTGAAAAGCTGCAGATGTTG+CGG 0.622363 1_3:-9809612 None:intergenic
TTACTACGTTGCAATGTGGA+AGG 0.626545 1_3:-9807846 None:intergenic
GGATCATGCTAATGGATGGA+TGG 0.627982 1_3:+9813115 Msa0102910:CDS
AATCCGGTGCAACTGAAAGA+GGG 0.632325 1_3:-9810094 None:intergenic
TTCTCCACACGATAAACATG+AGG 0.640327 1_3:-9813421 None:intergenic
GAAAGAAGAGAGAACAGGAG+CGG 0.643603 1_3:-9808054 None:intergenic
GAGCCGATCAATGCTAGCTG+AGG 0.644380 1_3:-9809826 None:intergenic
TTTGAATGTGCCTCAAATCG+TGG 0.646040 1_3:-9810302 None:intergenic
TAATGGATGGATGGTGTCCA+AGG 0.648234 1_3:+9813124 Msa0102910:CDS
ATCAAAGGCTATCCGTGATG+GGG 0.650446 1_3:+9813076 Msa0102910:CDS
GATCATATAGGTTGTAGTGG+AGG 0.650992 1_3:-9810253 None:intergenic
CTAGAATTAAAGGCCAACTG+AGG 0.674246 1_3:-9813176 None:intergenic
AGAGTTACTACGTTGCAATG+TGG 0.679250 1_3:-9807850 None:intergenic
TGATCAGAAACGATACAATG+AGG 0.681879 1_3:+9809703 Msa0102910:CDS
TCTCCACACGATAAACATGA+GGG 0.704536 1_3:-9813420 None:intergenic
ATGGAAGTACTTAATCATTG+CGG 0.709943 1_3:+9813562 Msa0102910:three_prime_UTR
AGTGTGGGATACGAAGACGA+TGG 0.765155 1_3:-9807735 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAGTAATTAATTTA+GGG + chr1_3:9811854-9811873 Msa0102910:intron 10.0%
!!! TAATTAATTACCTTTGAAAT+GGG - chr1_3:9808125-9808144 None:intergenic 15.0%
!!! ATAATTAATTACCTTTGAAA+TGG - chr1_3:9808126-9808145 None:intergenic 15.0%
!!! CATTAAATTGTTTTTGTATA+TGG - chr1_3:9808382-9808401 None:intergenic 15.0%
!!! TTGCTTTAATTTTTCAATTT+AGG + chr1_3:9809791-9809810 Msa0102910:intron 15.0%
!!! TCTATATTTTAGTTTTCATT+TGG + chr1_3:9810360-9810379 Msa0102910:intron 15.0%
!!! TAAAAGTGAACTTATTTTAT+TGG + chr1_3:9810746-9810765 Msa0102910:intron 15.0%
!!! AACTTTAAGACATATAAATT+AGG - chr1_3:9810860-9810879 None:intergenic 15.0%
!! AATTAGAAAGAAATTTAATC+TGG + chr1_3:9811297-9811316 Msa0102910:intron 15.0%
!! GAATTAAAAAAATTAAGTGT+TGG + chr1_3:9811403-9811422 Msa0102910:intron 15.0%
!! ATTTACTTAATTAATTAGAC+TGG + chr1_3:9811576-9811595 Msa0102910:intron 15.0%
!! AATATTAAAAGAAAGTAAGT+TGG + chr1_3:9811828-9811847 Msa0102910:intron 15.0%
!! GAATAAAGAGTAATTAATTT+AGG + chr1_3:9811853-9811872 Msa0102910:intron 15.0%
!! ATATTTATGAGGATATAAAT+TGG - chr1_3:9812445-9812464 None:intergenic 15.0%
!! TATTACAGAATTTAAACAAA+AGG - chr1_3:9812670-9812689 None:intergenic 15.0%
!! AAGACAGAAATAATATATTA+TGG - chr1_3:9812788-9812807 None:intergenic 15.0%
!! AATAAATAGTGAATATTTCA+GGG - chr1_3:9813499-9813518 None:intergenic 15.0%
!! AAATAAATAGTGAATATTTC+AGG - chr1_3:9813500-9813519 None:intergenic 15.0%
!!! GATTTTTAGATTATGTAGTA+AGG + chr1_3:9808560-9808579 Msa0102910:intron 20.0%
!! TCTGTATAAATAACTCAATT+GGG - chr1_3:9809389-9809408 None:intergenic 20.0%
!!! TTAAAAGTATCATTTGTCAA+AGG - chr1_3:9809497-9809516 None:intergenic 20.0%
!! CTGAAAATAAAGATGTTATT+TGG - chr1_3:9810072-9810091 None:intergenic 20.0%
!!! CATTTGGTTTAATTAATTGT+TGG + chr1_3:9810376-9810395 Msa0102910:intron 20.0%
!!! ATTATAGTTCGTTTACTTTT+GGG + chr1_3:9810601-9810620 Msa0102910:CDS 20.0%
!!! TTTACATTTTCATCTATACT+TGG + chr1_3:9810705-9810724 Msa0102910:intron 20.0%
!! TATATCAAAATAAGAAGCTA+CGG - chr1_3:9810792-9810811 None:intergenic 20.0%
!! ATACACCTTATTCTAAATAT+TGG + chr1_3:9811259-9811278 Msa0102910:intron 20.0%
!!! ATCAACCAATATTTAGAATA+AGG - chr1_3:9811267-9811286 None:intergenic 20.0%
!!! CTGCATTTCTTTTATATAAA+TGG + chr1_3:9811498-9811517 Msa0102910:intron 20.0%
!! CTGATGAAAAATAAATAGAA+TGG - chr1_3:9811553-9811572 None:intergenic 20.0%
!! TTCTCTCTCATAATAATTAA+GGG - chr1_3:9811810-9811829 None:intergenic 20.0%
!! ATTCTCTCTCATAATAATTA+AGG - chr1_3:9811811-9811830 None:intergenic 20.0%
!!! TAATTAATTTAGGGTATTCA+TGG + chr1_3:9811863-9811882 Msa0102910:intron 20.0%
!!! CTATTTTCAATGTATTTTCT+TGG + chr1_3:9811924-9811943 Msa0102910:intron 20.0%
!! TGTATACACATATATTTATG+AGG - chr1_3:9812456-9812475 None:intergenic 20.0%
!! GAAAATTGAATGAAAAATAG+TGG - chr1_3:9812738-9812757 None:intergenic 20.0%
!! AAAAACTTTCATGTTAGATT+TGG - chr1_3:9812760-9812779 None:intergenic 20.0%
!! TTCACTAATTATATATTGCT+AGG + chr1_3:9813634-9813653 Msa0102910:three_prime_UTR 20.0%
!! TCACTAATTATATATTGCTA+GGG + chr1_3:9813635-9813654 Msa0102910:three_prime_UTR 20.0%
!! TCAAATAATCAATAAAAACG+AGG - chr1_3:9813690-9813709 None:intergenic 20.0%
!!! CGTTTTTATTGATTATTTGA+CGG + chr1_3:9813690-9813709 Msa0102910:three_prime_UTR 20.0%
!!! TTTAGAACGAATGAAAATAA+CGG - chr1_3:9813729-9813748 None:intergenic 20.0%
!! GCTTTTCACTAATTAATGTT+GGG - chr1_3:9807639-9807658 None:intergenic 25.0%
!!! TTTTTTGCTTTCAGATTTGA+AGG + chr1_3:9807935-9807954 Msa0102910:intron 25.0%
! GACATTGTGAGTAATAAATA+AGG - chr1_3:9808185-9808204 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr1_3:9808263-9808282 Msa0102910:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG + chr1_3:9808264-9808283 Msa0102910:intron 25.0%
! GTTGAAAAAGCTTATGAAAA+TGG - chr1_3:9808314-9808333 None:intergenic 25.0%
!! TTTTCATAAGTTCTCCAATT+TGG + chr1_3:9808337-9808356 Msa0102910:intron 25.0%
!!! GTTGGTTTTATAATCCAAAT+TGG - chr1_3:9808354-9808373 None:intergenic 25.0%
!! TTTTTGTATATGGTACAAGT+TGG - chr1_3:9808372-9808391 None:intergenic 25.0%
! TAGATAACTATAAGAGATAG+AGG + chr1_3:9808587-9808606 Msa0102910:intron 25.0%
! AAACAACTTATAAGCGTTTA+TGG + chr1_3:9809086-9809105 Msa0102910:intron 25.0%
!!! TTGATTGAGTGAATTGATTT+TGG + chr1_3:9809155-9809174 Msa0102910:intron 25.0%
!!! TAGAATCAATTCTACTTTTG+AGG + chr1_3:9809263-9809282 Msa0102910:intron 25.0%
!! AAAATTGATTTCGACATGTT+TGG - chr1_3:9809291-9809310 None:intergenic 25.0%
! TGTATAAATAACTCAATTGG+GGG - chr1_3:9809387-9809406 None:intergenic 25.0%
! CTGTATAAATAACTCAATTG+GGG - chr1_3:9809388-9809407 None:intergenic 25.0%
! CTCTGTATAAATAACTCAAT+TGG - chr1_3:9809390-9809409 None:intergenic 25.0%
!!! AAGCTTTGTTCTTTTCTATT+GGG + chr1_3:9809554-9809573 Msa0102910:intron 25.0%
! ATATAATCAATCATCATCAG+AGG - chr1_3:9809764-9809783 None:intergenic 25.0%
! TTTAAAAATGAATTCAGAGC+TGG + chr1_3:9809974-9809993 Msa0102910:intron 25.0%
! CAAAAGTAAACGAACTATAA+TGG - chr1_3:9810602-9810621 None:intergenic 25.0%
!! CATTATAGTTCGTTTACTTT+TGG + chr1_3:9810600-9810619 Msa0102910:CDS 25.0%
! ACATTAGTAAGTTCAAAGTA+AGG - chr1_3:9810682-9810701 None:intergenic 25.0%
!!! AAATAAGTTCACTTTTACTC+TGG - chr1_3:9810743-9810762 None:intergenic 25.0%
! TACAGTAAAAATTAAGGCTT+TGG - chr1_3:9811050-9811069 None:intergenic 25.0%
!! AGCCTTAATTTTTACTGTAT+TGG + chr1_3:9811051-9811070 Msa0102910:intron 25.0%
!!! TGCTATTTATGTCAAAGTTT+TGG - chr1_3:9811106-9811125 None:intergenic 25.0%
! AATAAGGTGTATGTTTCAAT+TGG - chr1_3:9811251-9811270 None:intergenic 25.0%
! GAAAGATAAGGATAAAAAAG+TGG - chr1_3:9811458-9811477 None:intergenic 25.0%
! TATGAAAAGATGCACAAAAT+AGG - chr1_3:9811631-9811650 None:intergenic 25.0%
!!! TTGTTTCTAATAAAAAGCAC+CGG - chr1_3:9811704-9811723 None:intergenic 25.0%
! TGGTCAATCTTCTTATAAAA+AGG - chr1_3:9811751-9811770 None:intergenic 25.0%
!! ATTAAAAGAAAGTAAGTTGG+TGG + chr1_3:9811831-9811850 Msa0102910:intron 25.0%
!!! GTCTTTTGTTTCTTGTATAA+AGG + chr1_3:9811961-9811980 Msa0102910:intron 25.0%
! AACTTTGAATTGAGAAAATG+TGG + chr1_3:9812251-9812270 Msa0102910:intron 25.0%
! CATCATTTCTTACACAAATA+AGG + chr1_3:9812309-9812328 Msa0102910:intron 25.0%
! AAATGACATAGAACTTAAGT+GGG - chr1_3:9812360-9812379 None:intergenic 25.0%
! AAAATGACATAGAACTTAAG+TGG - chr1_3:9812361-9812380 None:intergenic 25.0%
!!! AACTCAATTTTTTTAGAACC+TGG + chr1_3:9812403-9812422 Msa0102910:intron 25.0%
!!! ACTCAATTTTTTTAGAACCT+GGG + chr1_3:9812404-9812423 Msa0102910:intron 25.0%
!!! TATATTGTGGCTTTTAGTTT+TGG + chr1_3:9812509-9812528 Msa0102910:intron 25.0%
! TTTAGTTAAACACAATGTCA+CGG + chr1_3:9812559-9812578 Msa0102910:intron 25.0%
! AACAAAAGGATAATTGTTTC+AGG - chr1_3:9812656-9812675 None:intergenic 25.0%
! TGTATATGTTGTGAAATTTC+AGG + chr1_3:9812827-9812846 Msa0102910:intron 25.0%
!!! TTCTCTTTATGTGTGTTTTT+TGG - chr1_3:9813254-9813273 None:intergenic 25.0%
!!! CTATTTATTTTGAACCATTG+TGG + chr1_3:9813510-9813529 Msa0102910:three_prime_UTR 25.0%
!! AGTAAATTCTTTTTCCACAA+TGG - chr1_3:9813527-9813546 None:intergenic 25.0%
!! TTAAGTACTTCCATTGTTTT+TGG - chr1_3:9813556-9813575 None:intergenic 25.0%
! AGTCATCTTATCAACAAAAA+AGG - chr1_3:9813605-9813624 None:intergenic 25.0%
!! TTTATTGATTATTTGACGGT+AGG + chr1_3:9813694-9813713 Msa0102910:three_prime_UTR 25.0%
! TTAGAACGAATGAAAATAAC+GGG - chr1_3:9813728-9813747 None:intergenic 25.0%
! GGCTTTTCACTAATTAATGT+TGG - chr1_3:9807640-9807659 None:intergenic 30.0%
TTAATTAGTGAAAAGCCCAT+TGG + chr1_3:9807643-9807662 Msa0102910:five_prime_UTR 30.0%
TAAATGAAAGTGAGAGAAAG+TGG - chr1_3:9807895-9807914 None:intergenic 30.0%
TAAGAAGATAAGGTAGAATG+AGG - chr1_3:9808098-9808117 None:intergenic 30.0%
AATGGGAAGATAAGAAGATA+AGG - chr1_3:9808108-9808127 None:intergenic 30.0%
TTCTTATCTTCCCATTTCAA+AGG + chr1_3:9808112-9808131 Msa0102910:CDS 30.0%
ATAAGGTGAAATCTAAAGAG+AGG - chr1_3:9808168-9808187 None:intergenic 30.0%
AAGCTTATGAAAATGGTCAT+GGG - chr1_3:9808307-9808326 None:intergenic 30.0%
AAAGCTTATGAAAATGGTCA+TGG - chr1_3:9808308-9808327 None:intergenic 30.0%
CATAACCATGTATAGCATAA+AGG - chr1_3:9808509-9808528 None:intergenic 30.0%
TATGATATACTCAGCTTATG+TGG + chr1_3:9808525-9808544 Msa0102910:intron 30.0%
! CTCTCTCTTATAATTTTCCT+AGG - chr1_3:9808617-9808636 None:intergenic 30.0%
ATAGGCTTAATCAGTTATCT+CGG - chr1_3:9808854-9808873 None:intergenic 30.0%
TAACTGATTAAGCCTATGTT+TGG + chr1_3:9808857-9808876 Msa0102910:intron 30.0%
! ATAGTAGCTTTTCCAAATCA+CGG + chr1_3:9808948-9808967 Msa0102910:intron 30.0%
!! TTTGGTTTAGAGTTTTGCAA+TGG - chr1_3:9809000-9809019 None:intergenic 30.0%
!!! AAGCTGTTTTAGTATGTGTT+TGG - chr1_3:9809018-9809037 None:intergenic 30.0%
TAGCAAATTAAGCGTATGTT+TGG + chr1_3:9809115-9809134 Msa0102910:intron 30.0%
! AGGAGTCAAAATTGATTCTA+GGG - chr1_3:9809318-9809337 None:intergenic 30.0%
!!! CAAGCTTTGTTCTTTTCTAT+TGG + chr1_3:9809553-9809572 Msa0102910:intron 30.0%
! TTCTTTTCTATTGGGTGTAT+AGG + chr1_3:9809562-9809581 Msa0102910:intron 30.0%
TGATGATTGATTATATGCTG+AGG + chr1_3:9809768-9809787 Msa0102910:intron 30.0%
!!! GGTGCTATTTATAAAGGTTT+TGG + chr1_3:9810168-9810187 Msa0102910:intron 30.0%
!!! TTTTGGAACATATACTTACC+TGG + chr1_3:9810185-9810204 Msa0102910:intron 30.0%
TTCGAATTCAGTGTAACAAA+TGG + chr1_3:9810575-9810594 Msa0102910:CDS 30.0%
TCGAATTCAGTGTAACAAAT+GGG + chr1_3:9810576-9810595 Msa0102910:CDS 30.0%
! GACGAAATAAAGAGTACATA+GGG - chr1_3:9811001-9811020 None:intergenic 30.0%
! AGACGAAATAAAGAGTACAT+AGG - chr1_3:9811002-9811021 None:intergenic 30.0%
GGCCAATACAGTAAAAATTA+AGG - chr1_3:9811056-9811075 None:intergenic 30.0%
AACATCTGTGAATGATTTCT+TGG - chr1_3:9811077-9811096 None:intergenic 30.0%
AATTGTGAACCAAGAAGTTT+AGG + chr1_3:9811127-9811146 Msa0102910:intron 30.0%
TAGACAGATTTCATTGAAAG+AGG + chr1_3:9811159-9811178 Msa0102910:intron 30.0%
CAAAGGAACTATTGAGTTTA+GGG - chr1_3:9811203-9811222 None:intergenic 30.0%
ACAAAGGAACTATTGAGTTT+AGG - chr1_3:9811204-9811223 None:intergenic 30.0%
TCAATAGTTCCTTTGTCATT+TGG + chr1_3:9811208-9811227 Msa0102910:intron 30.0%
TTGTTAAAGCGTGAAAGATA+AGG - chr1_3:9811470-9811489 None:intergenic 30.0%
! TTGTTTCTTGTATAAAGGAC+CGG + chr1_3:9811966-9811985 Msa0102910:intron 30.0%
TGAATTACTCTCTAAATTGC+AGG + chr1_3:9812015-9812034 Msa0102910:intron 30.0%
! GAAATTTGAAGCTAAATGAC+AGG + chr1_3:9812286-9812305 Msa0102910:intron 30.0%
AAAAGCCACAATATACTACA+GGG - chr1_3:9812504-9812523 None:intergenic 30.0%
TAAAAGCCACAATATACTAC+AGG - chr1_3:9812505-9812524 None:intergenic 30.0%
CAATCGAACGATCAAATTAT+TGG - chr1_3:9812928-9812947 None:intergenic 30.0%
!! TGCTGAAAGCATTATATCAA+AGG + chr1_3:9813061-9813080 Msa0102910:CDS 30.0%
GTAAATATCTCCAATTTCCT+TGG - chr1_3:9813144-9813163 None:intergenic 30.0%
AAAGGCAATCCTAGAATTAA+AGG - chr1_3:9813189-9813208 None:intergenic 30.0%
ATTGTGCATGTTAAGACAAA+AGG - chr1_3:9813207-9813226 None:intergenic 30.0%
GTTTCACAAAGATGGTATTA+AGG - chr1_3:9813450-9813469 None:intergenic 30.0%
TACTCATTAGCCAAAAACAA+TGG + chr1_3:9813543-9813562 Msa0102910:three_prime_UTR 30.0%
!! ATGGAAGTACTTAATCATTG+CGG + chr1_3:9813562-9813581 Msa0102910:three_prime_UTR 30.0%
TTCTTCTTCGAACCCTAATA+CGG - chr1_3:9807764-9807783 None:intergenic 35.0%
! GGAATAGATTGAGAAGGTAT+TGG - chr1_3:9807822-9807841 None:intergenic 35.0%
GGAATAGGAATAGATTGAGA+AGG - chr1_3:9807828-9807847 None:intergenic 35.0%
ATAACATCGATCATCGAAAC+TGG + chr1_3:9807960-9807979 Msa0102910:CDS 35.0%
ATCTAAAGAGAGGCTAAGAT+TGG - chr1_3:9808158-9808177 None:intergenic 35.0%
AGTAAGCTAAAACCAGGTTA+AGG - chr1_3:9808207-9808226 None:intergenic 35.0%
TTGGTAAGTAAGCTAAAACC+AGG - chr1_3:9808213-9808232 None:intergenic 35.0%
ACCAAAACAGCTTGTATTGT+AGG + chr1_3:9808228-9808247 Msa0102910:intron 35.0%
! ACCTACAATACAAGCTGTTT+TGG - chr1_3:9808232-9808251 None:intergenic 35.0%
CTAAGCCTTTATGCTATACA+TGG + chr1_3:9808501-9808520 Msa0102910:intron 35.0%
TAAGAGATAGAGGAAAACCT+AGG + chr1_3:9808597-9808616 Msa0102910:intron 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG - chr1_3:9808893-9808912 None:intergenic 35.0%
! TTTTCCAAATCACGGCAAAA+AGG + chr1_3:9808956-9808975 Msa0102910:intron 35.0%
! GGAGTCAAAATTGATTCTAG+GGG - chr1_3:9809317-9809336 None:intergenic 35.0%
! GAGGAGTCAAAATTGATTCT+AGG - chr1_3:9809319-9809338 None:intergenic 35.0%
TAAACATGTTGGTGTGTGTT+TGG - chr1_3:9809353-9809372 None:intergenic 35.0%
ACCAACATGTTTATCCTAAC+AGG + chr1_3:9809360-9809379 Msa0102910:intron 35.0%
CCAACATGTTTATCCTAACA+GGG + chr1_3:9809361-9809380 Msa0102910:intron 35.0%
TATCATTTGTCAAAGGCAGT+GGG - chr1_3:9809490-9809509 None:intergenic 35.0%
TTTCTATTGGGTGTATAGGA+TGG + chr1_3:9809566-9809585 Msa0102910:intron 35.0%
!! TAACAGTAGATTTCTAGCTC+CGG - chr1_3:9809659-9809678 None:intergenic 35.0%
TGATCAGAAACGATACAATG+AGG + chr1_3:9809703-9809722 Msa0102910:CDS 35.0%
ACGATACAATGAGGTTAGAA+TGG + chr1_3:9809712-9809731 Msa0102910:intron 35.0%
TCATATAGCTATGAGCTTAC+TGG + chr1_3:9809906-9809925 Msa0102910:CDS 35.0%
!! CTTGGTGGTGCTATTTATAA+AGG + chr1_3:9810162-9810181 Msa0102910:intron 35.0%
TGTAGACATGTCAAGAAAAG+AGG - chr1_3:9810420-9810439 None:intergenic 35.0%
TATCTTTGTCCAGAAAGGAA+TGG + chr1_3:9810642-9810661 Msa0102910:CDS 35.0%
!!! ACACCCTCCTTTTTTTTTAC+CGG + chr1_3:9810955-9810974 Msa0102910:intron 35.0%
! GAAATAAAGAGTACATAGGG+TGG - chr1_3:9810998-9811017 None:intergenic 35.0%
TTTCATTGAAAGAGGTAGTG+TGG + chr1_3:9811167-9811186 Msa0102910:intron 35.0%
TTCAGAATAAGCTGAACCTA+TGG + chr1_3:9811345-9811364 Msa0102910:intron 35.0%
TCAGAATAAGCTGAACCTAT+GGG + chr1_3:9811346-9811365 Msa0102910:intron 35.0%
! CTAGAACATTTAGTTCCCAT+AGG - chr1_3:9811364-9811383 None:intergenic 35.0%
ATGTTCTAGTCAGTCAATTC+TGG + chr1_3:9811375-9811394 Msa0102910:intron 35.0%
TCATTCTACTGAATGAAGTG+AGG + chr1_3:9811605-9811624 Msa0102910:intron 35.0%
!! TTCTAATAAAAAGCACCGGA+GGG - chr1_3:9811700-9811719 None:intergenic 35.0%
!! TTTCTAATAAAAAGCACCGG+AGG - chr1_3:9811701-9811720 None:intergenic 35.0%
CTTCAAGCATACTTGAAACT+TGG - chr1_3:9811771-9811790 None:intergenic 35.0%
ATTACTCTCTAAATTGCAGG+TGG + chr1_3:9812018-9812037 Msa0102910:intron 35.0%
! AAAATTTGATGACTGCAGTG+AGG - chr1_3:9812195-9812214 None:intergenic 35.0%
ATTTCTGTCTTGCTTCTTTG+TGG + chr1_3:9812797-9812816 Msa0102910:intron 35.0%
TTGTGAAATTTCAGGCTGTT+AGG + chr1_3:9812835-9812854 Msa0102910:intron 35.0%
AAATTTCAGGCTGTTAGGAT+TGG + chr1_3:9812840-9812859 Msa0102910:intron 35.0%
! TTGGTGATTTAGAGCTCTTT+AGG + chr1_3:9812859-9812878 Msa0102910:CDS 35.0%
TTGTCTTAACATGCACAATG+AGG + chr1_3:9813208-9813227 Msa0102910:CDS 35.0%
AGAAAGAAATTGCTGAGAAG+CGG + chr1_3:9813270-9813289 Msa0102910:CDS 35.0%
TTATCTTACCAATTGCTGTC+AGG + chr1_3:9813382-9813401 Msa0102910:three_prime_UTR 35.0%
AATACCATCTTTGTGAAACG+TGG + chr1_3:9813451-9813470 Msa0102910:three_prime_UTR 35.0%
ATACCATCTTTGTGAAACGT+GGG + chr1_3:9813452-9813471 Msa0102910:three_prime_UTR 35.0%
CCAATGCAACTACAACCAAT+GGG - chr1_3:9807661-9807680 None:intergenic 40.0%
ACCAATGCAACTACAACCAA+TGG - chr1_3:9807662-9807681 None:intergenic 40.0%
TTACTACGTTGCAATGTGGA+AGG - chr1_3:9807849-9807868 None:intergenic 40.0%
AGAGTTACTACGTTGCAATG+TGG - chr1_3:9807853-9807872 None:intergenic 40.0%
TTTGCGAACTTCCTTCAAGT+TGG - chr1_3:9807988-9808007 None:intergenic 40.0%
TCAAGGAAAGAAGAGAGAAC+AGG - chr1_3:9808062-9808081 None:intergenic 40.0%
GAAGATAAGGTAGAATGAGG+AGG - chr1_3:9808095-9808114 None:intergenic 40.0%
AGAGGCTAAGATTGGAGAAA+AGG - chr1_3:9808150-9808169 None:intergenic 40.0%
TACTCACAATGTCCTTAACC+TGG + chr1_3:9808192-9808211 Msa0102910:intron 40.0%
ACTTGTGCTATACACACCTA+GGG + chr1_3:9808748-9808767 Msa0102910:intron 40.0%
CCAATAAGCCAATCCAAAAC+AGG - chr1_3:9808774-9808793 None:intergenic 40.0%
!!! CCTGTTTTGGATTGGCTTAT+TGG + chr1_3:9808771-9808790 Msa0102910:intron 40.0%
CAAAAAGGCTTCAAAACGTG+CGG + chr1_3:9808971-9808990 Msa0102910:intron 40.0%
!! TAAGCGTATGTTTGGTTCTG+CGG + chr1_3:9809123-9809142 Msa0102910:intron 40.0%
CCCTGTTAGGATAAACATGT+TGG - chr1_3:9809364-9809383 None:intergenic 40.0%
GTTCCTATCAAAAACGCTAC+TGG + chr1_3:9809415-9809434 Msa0102910:intron 40.0%
! TCTCCAGTAGCGTTTTTGAT+AGG - chr1_3:9809421-9809440 None:intergenic 40.0%
GTATCATTTGTCAAAGGCAG+TGG - chr1_3:9809491-9809510 None:intergenic 40.0%
ATAGGATGGTGATCATGAGA+TGG + chr1_3:9809580-9809599 Msa0102910:intron 40.0%
TTGAAAAGCTGCAGATGTTG+CGG - chr1_3:9809615-9809634 None:intergenic 40.0%
! CAATCAGAAAAAGAAGCACG+AGG - chr1_3:9809685-9809704 None:intergenic 40.0%
GAGATCTTGCTGAAATTCGA+GGG + chr1_3:9809928-9809947 Msa0102910:CDS 40.0%
GATCATATAGGTTGTAGTGG+AGG - chr1_3:9810256-9810275 None:intergenic 40.0%
CCTGATCATATAGGTTGTAG+TGG - chr1_3:9810259-9810278 None:intergenic 40.0%
CCACTACAACCTATATGATC+AGG + chr1_3:9810256-9810275 Msa0102910:CDS 40.0%
ACTTCTCTGCCTGATCATAT+AGG - chr1_3:9810268-9810287 None:intergenic 40.0%
TTTGAATGTGCCTCAAATCG+TGG - chr1_3:9810305-9810324 None:intergenic 40.0%
GATCAACACAATATACCTGC+TGG - chr1_3:9810328-9810347 None:intergenic 40.0%
TCTTCTACCTCGGGAAAATT+CGG + chr1_3:9810473-9810492 Msa0102910:CDS 40.0%
GAAAATTCGGACCATTCAGT+TGG + chr1_3:9810486-9810505 Msa0102910:CDS 40.0%
ATCGGTATACTCCAACTGAA+TGG - chr1_3:9810500-9810519 None:intergenic 40.0%
!! TTTTGGGAGAAATTCCTGAG+AGG + chr1_3:9810617-9810636 Msa0102910:CDS 40.0%
AGGACTATCTTTGTCCAGAA+AGG + chr1_3:9810637-9810656 Msa0102910:CDS 40.0%
AAGCTTTCTCCATTCCTTTC+TGG - chr1_3:9810654-9810673 None:intergenic 40.0%
AAGGAATGGAGAAAGCTTTG+AGG + chr1_3:9810656-9810675 Msa0102910:CDS 40.0%
GGTGTATGTGTCGAAAAGTT+TGG - chr1_3:9810940-9810959 None:intergenic 40.0%
! GCACCGGTAAAAAAAAAGGA+GGG - chr1_3:9810961-9810980 None:intergenic 40.0%
!! CAAGGCACCGGTAAAAAAAA+AGG - chr1_3:9810965-9810984 None:intergenic 40.0%
TAGGGTGGAATAATGTAGCA+AGG - chr1_3:9810983-9811002 None:intergenic 40.0%
AATGCAGCACCTAAACTTCT+TGG - chr1_3:9811139-9811158 None:intergenic 40.0%
!! ATTTGGCTTTGCCAGAATGT+AGG + chr1_3:9811225-9811244 Msa0102910:intron 40.0%
! GTTTCAATTGGCCTACATTC+TGG - chr1_3:9811239-9811258 None:intergenic 40.0%
CTGTTATGAAATACTCCCTC+CGG + chr1_3:9811682-9811701 Msa0102910:intron 40.0%
TTTCTTGTATAAAGGACCGG+AGG + chr1_3:9811969-9811988 Msa0102910:intron 40.0%
TTCTTGTATAAAGGACCGGA+GGG + chr1_3:9811970-9811989 Msa0102910:intron 40.0%
TGTGTATATTCTACTCCCTC+CGG - chr1_3:9811988-9812007 None:intergenic 40.0%
CTAGTCCCTGTAGTATATTG+TGG + chr1_3:9812496-9812515 Msa0102910:intron 40.0%
GCTACTACTTTCAGTACAGA+CGG + chr1_3:9812900-9812919 Msa0102910:CDS 40.0%
GATTGCGTCATAATGTCATC+AGG + chr1_3:9812943-9812962 Msa0102910:CDS 40.0%
ATCATATTCTCGCATCTCAC+TGG + chr1_3:9812989-9813008 Msa0102910:CDS 40.0%
ATGCTTTCAGCATCAGCAAT+GGG - chr1_3:9813053-9813072 None:intergenic 40.0%
AATGCTTTCAGCATCAGCAA+TGG - chr1_3:9813054-9813073 None:intergenic 40.0%
ATATCAAAGGCTATCCGTGA+TGG + chr1_3:9813074-9813093 Msa0102910:CDS 40.0%
TATCAAAGGCTATCCGTGAT+GGG + chr1_3:9813075-9813094 Msa0102910:CDS 40.0%
CATTGGATCATGCTAATGGA+TGG + chr1_3:9813111-9813130 Msa0102910:CDS 40.0%
CTAGAATTAAAGGCCAACTG+AGG - chr1_3:9813179-9813198 None:intergenic 40.0%
!! CTCAGTTGGCCTTTAATTCT+AGG + chr1_3:9813177-9813196 Msa0102910:CDS 40.0%
GATAAACATGAGGGAGCAAA+TGG - chr1_3:9813414-9813433 None:intergenic 40.0%
TCTCCACACGATAAACATGA+GGG - chr1_3:9813423-9813442 None:intergenic 40.0%
TTCTCCACACGATAAACATG+AGG - chr1_3:9813424-9813443 None:intergenic 40.0%
AAACCCACGTTTCACAAAGA+TGG - chr1_3:9813458-9813477 None:intergenic 40.0%
! ACGTGGGTTTACCTTTTAGA+TGG + chr1_3:9813468-9813487 Msa0102910:three_prime_UTR 40.0%
TCAGGGATCTTCCATCTAAA+AGG - chr1_3:9813482-9813501 None:intergenic 40.0%
GGCGTAATATGTTGTTCTGT+CGG + chr1_3:9813656-9813675 Msa0102910:three_prime_UTR 40.0%
! CCCATTGGTTGTAGTTGCAT+TGG + chr1_3:9807658-9807677 Msa0102910:five_prime_UTR 45.0%
TTCTTCGAACCCTAATACGG+TGG - chr1_3:9807761-9807780 None:intergenic 45.0%
CGTTGCAATGTGGAAGGAAT+AGG - chr1_3:9807843-9807862 None:intergenic 45.0%
! CGAAACTGGTTCCAACTTGA+AGG + chr1_3:9807974-9807993 Msa0102910:CDS 45.0%
TGGACCTTAACGCCATAGTA+AGG - chr1_3:9808028-9808047 None:intergenic 45.0%
GAAAGAAGAGAGAACAGGAG+CGG - chr1_3:9808057-9808076 None:intergenic 45.0%
GAGGAGGAAGAACATGATCA+AGG - chr1_3:9808079-9808098 None:intergenic 45.0%
CACTTGTGCTATACACACCT+AGG + chr1_3:9808747-9808766 Msa0102910:intron 45.0%
TAAGCCTATGTTTGGCTGTG+CGG + chr1_3:9808865-9808884 Msa0102910:intron 45.0%
! GAAGCCTTTTTGCCGTGATT+TGG - chr1_3:9808963-9808982 None:intergenic 45.0%
! TGTGTGTTTGGTTCGACTTC+TGG - chr1_3:9809341-9809360 None:intergenic 45.0%
TGGTGATCATGAGATGGAAG+TGG + chr1_3:9809586-9809605 Msa0102910:CDS 45.0%
!! GTTCCTCAGCTAGCATTGAT+CGG + chr1_3:9809823-9809842 Msa0102910:CDS 45.0%
GGAGATCTTGCTGAAATTCG+AGG + chr1_3:9809927-9809946 Msa0102910:CDS 45.0%
CTGAAATTCGAGGGTGAGTT+GGG + chr1_3:9809937-9809956 Msa0102910:intron 45.0%
AATCCGGTGCAACTGAAAGA+GGG - chr1_3:9810097-9810116 None:intergenic 45.0%
ATGATCAGGCAGAGAAGTTG+AGG + chr1_3:9810270-9810289 Msa0102910:CDS 45.0%
TGTCGCTATCTCTTCTACCT+CGG + chr1_3:9810463-9810482 Msa0102910:CDS 45.0%
! CAGGAGAGACTCTTTTGCAT+CGG - chr1_3:9810518-9810537 None:intergenic 45.0%
TGGACAAAGATAGTCCTCTC+AGG - chr1_3:9810634-9810653 None:intergenic 45.0%
TCGATCACATGACTCATGAC+TGG + chr1_3:9810904-9810923 Msa0102910:intron 45.0%
GTCGAAAAGTTTGGCTACAC+CGG - chr1_3:9810931-9810950 None:intergenic 45.0%
!! GGCACCGGTAAAAAAAAAGG+AGG - chr1_3:9810962-9810981 None:intergenic 45.0%
GGAATAATGTAGCAAGGCAC+CGG - chr1_3:9810977-9810996 None:intergenic 45.0%
CTGGCAAAGCCAAATGACAA+AGG - chr1_3:9811220-9811239 None:intergenic 45.0%
TGTTGGATAATAGCCCCAAC+TGG + chr1_3:9811420-9811439 Msa0102910:intron 45.0%
GATCACAAAACGACCAGTTG+GGG - chr1_3:9811436-9811455 None:intergenic 45.0%
GGATCACAAAACGACCAGTT+GGG - chr1_3:9811437-9811456 None:intergenic 45.0%
TGGATCACAAAACGACCAGT+TGG - chr1_3:9811438-9811457 None:intergenic 45.0%
CGTCATAATGTCATCAGGAC+TGG + chr1_3:9812948-9812967 Msa0102910:CDS 45.0%
CCTCAACTTCTGAGCTACAT+CGG - chr1_3:9813015-9813034 None:intergenic 45.0%
ATCAAAGGCTATCCGTGATG+GGG + chr1_3:9813076-9813095 Msa0102910:CDS 45.0%
GCGACATTGGATCATGCTAA+TGG + chr1_3:9813107-9813126 Msa0102910:CDS 45.0%
! GGATCATGCTAATGGATGGA+TGG + chr1_3:9813115-9813134 Msa0102910:CDS 45.0%
! TAATGGATGGATGGTGTCCA+AGG + chr1_3:9813124-9813143 Msa0102910:CDS 45.0%
TGGATGGTGTCCAAGGAAAT+TGG + chr1_3:9813131-9813150 Msa0102910:CDS 45.0%
CTCTACAAATGAGCCTCAGT+TGG + chr1_3:9813163-9813182 Msa0102910:CDS 45.0%
AGAGCTGGCAAAGCATATTG+AGG + chr1_3:9813316-9813335 Msa0102910:CDS 45.0%
AGTGTGGGATACGAAGACGA+TGG - chr1_3:9807738-9807757 None:intergenic 50.0%
ATCCCACACTCCACCGTATT+AGG + chr1_3:9807748-9807767 Msa0102910:five_prime_UTR 50.0%
TCCCACACTCCACCGTATTA+GGG + chr1_3:9807749-9807768 Msa0102910:five_prime_UTR 50.0%
ACCCTAATACGGTGGAGTGT+GGG - chr1_3:9807753-9807772 None:intergenic 50.0%
AACCCTAATACGGTGGAGTG+TGG - chr1_3:9807754-9807773 None:intergenic 50.0%
TGCGCCTTACTATGGCGTTA+AGG + chr1_3:9808021-9808040 Msa0102910:CDS 50.0%
! TACACACCTAGGGCCTGTTT+TGG + chr1_3:9808758-9808777 Msa0102910:intron 50.0%
!! ACCTAGGGCCTGTTTTGGAT+TGG + chr1_3:9808763-9808782 Msa0102910:intron 50.0%
!!! GCTGGGATTTTGGCTTGATG+TGG - chr1_3:9808899-9808918 None:intergenic 50.0%
CATCAAGCCAAAATCCCAGC+AGG + chr1_3:9808899-9808918 Msa0102910:intron 50.0%
! GTGAGTTCCTGCTGGGATTT+TGG - chr1_3:9808909-9808928 None:intergenic 50.0%
TGCAAACGTGAGTTCCTGCT+GGG - chr1_3:9808916-9808935 None:intergenic 50.0%
! GTGTTTGGTTCGACTTCTGG+AGG - chr1_3:9809338-9809357 None:intergenic 50.0%
GCTAGCTGAGGAACAAGCTT+TGG - chr1_3:9809817-9809836 None:intergenic 50.0%
GCTGAAATTCGAGGGTGAGT+TGG + chr1_3:9809936-9809955 Msa0102910:intron 50.0%
CAATCCGGTGCAACTGAAAG+AGG - chr1_3:9810098-9810117 None:intergenic 50.0%
CAACCTGACCAAGCTCATCA+TGG - chr1_3:9810131-9810150 None:intergenic 50.0%
CATGATGAGCTTGGTCAGGT+TGG + chr1_3:9810129-9810148 Msa0102910:intron 50.0%
!! CAGGTTGGTGTTGACTTGCT+TGG + chr1_3:9810144-9810163 Msa0102910:intron 50.0%
!! GTTGGTGTTGACTTGCTTGG+TGG + chr1_3:9810147-9810166 Msa0102910:intron 50.0%
! CTTACCTGGTGATGTCATGC+AGG + chr1_3:9810199-9810218 Msa0102910:intron 50.0%
GTTTCCTGCATGACATCACC+AGG - chr1_3:9810206-9810225 None:intergenic 50.0%
TGAGGCACATTCAAACCAGC+AGG + chr1_3:9810310-9810329 Msa0102910:CDS 50.0%
GTCGCTATCTCTTCTACCTC+GGG + chr1_3:9810464-9810483 Msa0102910:CDS 50.0%
! GAATGGTCCGAATTTTCCCG+AGG - chr1_3:9810483-9810502 None:intergenic 50.0%
TGCAAAAGAGTCTCTCCTGC+AGG + chr1_3:9810519-9810538 Msa0102910:CDS 50.0%
! TAAAGCACCAGTTGCAGCAC+AGG + chr1_3:9810549-9810568 Msa0102910:CDS 50.0%
! AAAGCACCAGTTGCAGCACA+GGG + chr1_3:9810550-9810569 Msa0102910:CDS 50.0%
! CACATGACTCATGACTGGTC+CGG + chr1_3:9810909-9810928 Msa0102910:intron 50.0%
GGCTGCATAAATAGAGTCCC+AGG - chr1_3:9812424-9812443 None:intergenic 50.0%
ACACTTTCTACCTTGCCTGC+AGG + chr1_3:9812473-9812492 Msa0102910:intron 50.0%
TCAGGTGCATCTCAACAGCA+TGG - chr1_3:9812593-9812612 None:intergenic 50.0%
ATGCTGTTGAGATGCACCTG+AGG + chr1_3:9812592-9812611 Msa0102910:intron 50.0%
TGCTGTTGAGATGCACCTGA+GGG + chr1_3:9812593-9812612 Msa0102910:intron 50.0%
CCGATGTAGCTCAGAAGTTG+AGG + chr1_3:9813012-9813031 Msa0102910:CDS 50.0%
TCGCATCAATTGCCCCATCA+CGG - chr1_3:9813091-9813110 None:intergenic 50.0%
TGGGGCAATTGATGCGACAT+TGG + chr1_3:9813094-9813113 Msa0102910:CDS 50.0%
GCAACAACAAGAGCAAGAGC+TGG + chr1_3:9813301-9813320 Msa0102910:CDS 50.0%
GCTGGCAAAGCATATTGAGG+AGG + chr1_3:9813319-9813338 Msa0102910:CDS 50.0%
GGAGAGATCCTGACAGCAAT+TGG - chr1_3:9813393-9813412 None:intergenic 50.0%
GCTCCCTCATGTTTATCGTG+TGG + chr1_3:9813417-9813436 Msa0102910:three_prime_UTR 50.0%
TCGTGCAGTGCGCCTTACTA+TGG + chr1_3:9808013-9808032 Msa0102910:CDS 55.0%
GAGAACAGGAGCGGTGAGTT+TGG - chr1_3:9808048-9808067 None:intergenic 55.0%
GCCAATCCAAAACAGGCCCT+AGG - chr1_3:9808767-9808786 None:intergenic 55.0%
CTGCAAACGTGAGTTCCTGC+TGG - chr1_3:9808917-9808936 None:intergenic 55.0%
ACTCAATTGGGGGCCCTGTT+AGG - chr1_3:9809377-9809396 None:intergenic 55.0%
! TCCAGCCAAGCACTTGTTGC+CGG + chr1_3:9809637-9809656 Msa0102910:CDS 55.0%
TAGCTCCGGCAACAAGTGCT+TGG - chr1_3:9809645-9809664 None:intergenic 55.0%
GAGCCGATCAATGCTAGCTG+AGG - chr1_3:9809829-9809848 None:intergenic 55.0%
GCACCCTCTTTCAGTTGCAC+CGG + chr1_3:9810091-9810110 Msa0102910:intron 55.0%
CATGGCGCAAGGTAGCAATC+CGG - chr1_3:9810113-9810132 None:intergenic 55.0%
ACCTTGCGCCATGATGAGCT+TGG + chr1_3:9810120-9810139 Msa0102910:CDS 55.0%
ACCAAGCTCATCATGGCGCA+AGG - chr1_3:9810124-9810143 None:intergenic 55.0%
GGCAGAGAAGTTGAGGTCGA+AGG + chr1_3:9810277-9810296 Msa0102910:CDS 55.0%
GTCGAAGGCTCCACGATTTG+AGG + chr1_3:9810292-9810311 Msa0102910:CDS 55.0%
CGAAAACCCTGTGCTGCAAC+TGG - chr1_3:9810559-9810578 None:intergenic 55.0%
!! TACTACAGGGACTAGCCTGC+AGG - chr1_3:9812491-9812510 None:intergenic 55.0%
TTGCTGAGAAGCGGAGAGAG+AGG + chr1_3:9813279-9813298 Msa0102910:CDS 55.0%
GGCACCGCACAGCCAAACAT+AGG - chr1_3:9808872-9808891 None:intergenic 60.0%
TCCGGCAACAAGTGCTTGGC+TGG - chr1_3:9809641-9809660 None:intergenic 60.0%
GCGCCATGATGAGCTTGGTC+AGG + chr1_3:9810125-9810144 Msa0102910:CDS 60.0%
GTGCTTTACGAGCAGCCTGC+AGG - chr1_3:9810537-9810556 None:intergenic 60.0%
!! CAGGGACTAGCCTGCAGGCA+AGG - chr1_3:9812486-9812505 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9807620 9813777 9807620 ID=Msa0102910;Name=Msa0102910
chr1_3 mRNA 9807620 9813777 9807620 ID=Msa0102910-mRNA-1;Parent=Msa0102910;Name=Msa0102910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|0.85|0.87|1|1|1|8|413|486
chr1_3 exon 9807620 9807864 9807620 ID=Msa0102910-mRNA-1:exon:4021;Parent=Msa0102910-mRNA-1
chr1_3 exon 9807949 9808133 9807949 ID=Msa0102910-mRNA-1:exon:4022;Parent=Msa0102910-mRNA-1
chr1_3 exon 9809584 9809724 9809584 ID=Msa0102910-mRNA-1:exon:4023;Parent=Msa0102910-mRNA-1
chr1_3 exon 9809813 9809949 9809813 ID=Msa0102910-mRNA-1:exon:4024;Parent=Msa0102910-mRNA-1
chr1_3 exon 9810092 9810146 9810092 ID=Msa0102910-mRNA-1:exon:4025;Parent=Msa0102910-mRNA-1
chr1_3 exon 9810221 9810331 9810221 ID=Msa0102910-mRNA-1:exon:4026;Parent=Msa0102910-mRNA-1
chr1_3 exon 9810460 9810699 9810460 ID=Msa0102910-mRNA-1:exon:4027;Parent=Msa0102910-mRNA-1
chr1_3 exon 9812849 9813777 9812849 ID=Msa0102910-mRNA-1:exon:4028;Parent=Msa0102910-mRNA-1
chr1_3 five_prime_UTR 9807620 9807788 9807620 ID=Msa0102910-mRNA-1:five_prime_utr;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9807789 9807864 9807789 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9807949 9808133 9807949 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9809584 9809724 9809584 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9809813 9809949 9809813 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9810092 9810146 9810092 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9810221 9810331 9810221 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9810460 9810699 9810460 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 CDS 9812849 9813364 9812849 ID=Msa0102910-mRNA-1:cds;Parent=Msa0102910-mRNA-1
chr1_3 three_prime_UTR 9813365 9813777 9813365 ID=Msa0102910-mRNA-1:three_prime_utr;Parent=Msa0102910-mRNA-1
Gene Sequence

>Msa0102910

ATGACTCAAGAAGAAGAGATGACAGATCGTCCAATACCTTCTCAATCTATTCCTATTCCTTCCACATTGCAACGTAATTTGAAGGATATAACATCGATCATCGAAACTGGTTCCAACTTGAAGGAAGTTCGCAAAATATCTCGTGCAGTGCGCCTTACTATGGCGTTAAGGTCCAAACTCACCGCTCCTGTTCTCTCTTCTTTCCTTGATCATGTTCTTCCTCCTCATTCTACCTTATCTTCTTATCTTCCCATTTCAAAGGATGGTGATCATGAGATGGAAGTGGACACCGCAACATCTGCAGCTTTTCAAACTCCAGCCAAGCACTTGTTGCCGGAGCTAGAAATCTACTGTTACTTCCTCGTGCTTCTTTTTCTGATTGATCAGAAACGATACAATGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGATCGGCTCAAGAACTTGAATAGAAGAACTGTTGATGTTATTGCTTCGAGACTGTACTTTTATTACTCATATAGCTATGAGCTTACTGGAGATCTTGCTGAAATTCGAGGCACCCTCTTTCAGTTGCACCGGATTGCTACCTTGCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTCCACTACAACCTATATGATCAGGCAGAGAAGTTGAGGTCGAAGGCTCCACGATTTGAGGCACATTCAAACCAGCAGTTCTGTCGCTATCTCTTCTACCTCGGGAAAATTCGGACCATTCAGTTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCACCAGTTGCAGCACAGGGTTTTCGAATTCAGTGTAACAAATGGGCCATTATAGTTCGTTTACTTTTGGGAGAAATTCCTGAGAGGACTATCTTTGTCCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAACTTACTAATGCTGTTAGGATTGGTGATTTAGAGCTCTTTAGGAATGTTGCAGAGAAGTATGCTACTACTTTCAGTACAGACGGAACCAATAATTTGATCGTTCGATTGCGTCATAATGTCATCAGGACTGGTTTGCGTAACATCAGTATATCATATTCTCGCATCTCACTGGCCGATGTAGCTCAGAAGTTGAGGTTGAGCTCTGCAGATCCCATTGCTGATGCTGAAAGCATTATATCAAAGGCTATCCGTGATGGGGCAATTGATGCGACATTGGATCATGCTAATGGATGGATGGTGTCCAAGGAAATTGGAGATATTTACTCTACAAATGAGCCTCAGTTGGCCTTTAATTCTAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCAAGCACTGCGTTTTCCAAAAAACACACATAAAGAGAAAGAAATTGCTGAGAAGCGGAGAGAGAGGCAACAACAAGAGCAAGAGCTGGCAAAGCATATTGAGGAGGAAGATGATGATGATGACTTCTGA

Protein sequence

>Msa0102910

MTQEEEMTDRPIPSQSIPIPSTLQRNLKDITSIIETGSNLKEVRKISRAVRLTMALRSKLTAPVLSSFLDHVLPPHSTLSSYLPISKDGDHEMEVDTATSAAFQTPAKHLLPELEIYCYFLVLLFLIDQKRYNEAKACSSASIDRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGTLFQLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAAQGFRIQCNKWAIIVRLLLGEIPERTIFVQKGMEKALRPYFELTNAVRIGDLELFRNVAEKYATTFSTDGTNNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLSSADPIADAESIISKAIRDGAIDATLDHANGWMVSKEIGDIYSTNEPQLAFNSRIAFCLNMHNEAVQALRFPKNTHKEKEIAEKRRERQQQEQELAKHIEEEDDDDDF*