AlfalfaGEDB | Msa1218610

M. sativa cultivar zhongmu-4 / Msa1218610

KEGG: K00382
GO: GO:0003674 GO:0003824 GO:0004148 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006082 GO:0006084 GO:0006085 GO:0006086 GO:0006090 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032787 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0046685 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF07992.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218610	sp\|A8MS68\|PLPD1_ARATH	81.675	573	84	7	1	565	1	560	0.0	904

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218610	G7JMT6	97.707	567	4	1	1	567	1	558	0.0	1120

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021290	Msa1218610	0.848672	5.277918e-60	-8.615850e-47
Msa0021320	Msa1218610	0.841282	5.222972e-58	-8.615850e-47
Msa0040220	Msa1218610	0.855599	5.660573e-62	-8.615850e-47
Msa0057850	Msa1218610	0.826419	2.741011e-54	-8.615850e-47
Msa0102910	Msa1218610	0.806001	1.016846e-49	-8.615850e-47
Msa0113920	Msa1218610	0.845792	3.255580e-59	-8.615850e-47
Msa0116600	Msa1218610	0.811642	6.321784e-51	-8.615850e-47
Msa0116690	Msa1218610	0.810609	1.058782e-50	-8.615850e-47
Msa0132460	Msa1218610	0.806940	6.443000e-50	-8.615850e-47
Msa0134580	Msa1218610	0.819058	1.417795e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218610	MtrunA17_Chr4g0068201	97.707	567	4	1	1	567	1	558	0.0	1120
Msa1218610	MtrunA17_Chr2g0294661	85.062	569	70	4	3	567	4	561	0.0	931
Msa1218610	MtrunA17_Chr4g0068951	34.646	508	292	12	60	553	9	490	1.79e-73	244
Msa1218610	MtrunA17_Chr1g0184771	33.008	512	289	17	54	549	48	521	9.19e-53	189
Msa1218610	MtrunA17_Chr6g0462411	28.513	491	295	15	79	549	22	476	1.38e-42	160

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1218610	AT3G16950.1	81.675	573	84	7	1	565	1	560	0.0	905
Msa1218610	AT3G16950.2	81.675	573	84	7	1	565	1	560	0.0	904
Msa1218610	AT4G16155.1	80.492	569	97	4	1	566	1	558	0.0	889
Msa1218610	AT1G48030.2	35.686	510	294	13	50	553	14	495	3.98e-76	252
Msa1218610	AT1G48030.5	35.686	510	294	13	50	553	14	495	3.98e-76	252
Msa1218610	AT1G48030.3	35.686	510	294	13	50	553	14	495	3.98e-76	252
Msa1218610	AT1G48030.1	35.686	510	294	13	50	553	14	495	3.98e-76	252
Msa1218610	AT1G48030.4	35.686	510	294	13	50	553	14	495	3.98e-76	252
Msa1218610	AT3G17240.1	35.294	510	296	12	50	553	14	495	5.36e-75	249
Msa1218610	AT3G17240.3	35.294	510	296	12	50	553	14	495	5.36e-75	249

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Find 180 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGCAGCCTCAAGCA+AGG	0.522301	8_1:-81243206	Msa1218610:intron
AAAGATATCATCATTGCCAC+TGG	0.572964	8_1:-81246506	Msa1218610:CDS
AAAGCCCTAGCAGAAAATGA+AGG	0.551065	8_1:-81243120	Msa1218610:CDS
AAAGTGGTTTGTTGGGTTTA+TGG	0.194690	8_1:-81249403	Msa1218610:five_prime_UTR
AAATAGCTCATCAAGAACCT+CGG	0.637846	8_1:+81242596	None:intergenic
AAATCAGCAAGCTGGCTCAA+AGG	0.512433	8_1:-81244568	Msa1218610:CDS
AAATTTGCAGCCTCAAGCAA+GGG	0.577769	8_1:-81243205	Msa1218610:intron
AACGAAAGGAACAGAACCAG+TGG	0.684097	8_1:+81246490	None:intergenic
AACTCCCAACGGACTCATCG+AGG	0.677499	8_1:-81249331	Msa1218610:five_prime_UTR
AACTCCTTGTCTGTCATACC+CGG	0.536621	8_1:+81247954	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAGAGAGATTGAAAA+TGG	+	chr8_1:81242274-81242293	None:intergenic	30.0%
AATGACAGTCAAAAAACATG+AGG	+	chr8_1:81242652-81242671	None:intergenic	30.0%
ACTAGCTATTGATATGCAAA+TGG	-	chr8_1:81242762-81242781	Msa1218610:intron	30.0%
TGGTTAAGCATACCATAAAA+GGG	+	chr8_1:81242830-81242849	None:intergenic	30.0%
TTTGATAAGTTAGTGATTGC+AGG	-	chr8_1:81242979-81242998	Msa1218610:intron	30.0%
TTGATAAGTTAGTGATTGCA+GGG	-	chr8_1:81242980-81242999	Msa1218610:intron	30.0%
TATACATGATGTAAAGAGAG+CGG	-	chr8_1:81243485-81243504	Msa1218610:CDS	30.0%
TACCAATATAGTACCAAAAC+CGG	+	chr8_1:81243675-81243694	None:intergenic	30.0%
CTCTGCTAAACAAATTGAAT+TGG	-	chr8_1:81244444-81244463	Msa1218610:intron	30.0%
TACTCTAATTTAGTGTACGA+GGG	+	chr8_1:81244571-81244590	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	81242115	81249428	81242115	ID=Msa1218610;Name=Msa1218610
chr8_1	mRNA	81242115	81249428	81242115	ID=Msa1218610-mRNA-1;Parent=Msa1218610;Name=Msa1218610-mRNA-1;_AED=0.13;_eAED=0.13;_QI=193\|0.81\|0.76\|1\|1\|1\|17\|0\|622
chr8_1	exon	81242115	81242153	81242115	ID=Msa1218610-mRNA-1:exon:28735;Parent=Msa1218610-mRNA-1
chr8_1	exon	81242235	81242363	81242235	ID=Msa1218610-mRNA-1:exon:28734;Parent=Msa1218610-mRNA-1
chr8_1	exon	81242436	81242459	81242436	ID=Msa1218610-mRNA-1:exon:28733;Parent=Msa1218610-mRNA-1
chr8_1	exon	81242584	81242655	81242584	ID=Msa1218610-mRNA-1:exon:28732;Parent=Msa1218610-mRNA-1
chr8_1	exon	81242768	81242881	81242768	ID=Msa1218610-mRNA-1:exon:28731;Parent=Msa1218610-mRNA-1
chr8_1	exon	81243104	81243217	81243104	ID=Msa1218610-mRNA-1:exon:28730;Parent=Msa1218610-mRNA-1
chr8_1	exon	81243404	81243531	81243404	ID=Msa1218610-mRNA-1:exon:28729;Parent=Msa1218610-mRNA-1
chr8_1	exon	81243579	81243657	81243579	ID=Msa1218610-mRNA-1:exon:28728;Parent=Msa1218610-mRNA-1
chr8_1	exon	81243735	81243809	81243735	ID=Msa1218610-mRNA-1:exon:28727;Parent=Msa1218610-mRNA-1
chr8_1	exon	81243895	81243957	81243895	ID=Msa1218610-mRNA-1:exon:28726;Parent=Msa1218610-mRNA-1
chr8_1	exon	81244348	81244428	81244348	ID=Msa1218610-mRNA-1:exon:28725;Parent=Msa1218610-mRNA-1
chr8_1	exon	81244514	81244639	81244514	ID=Msa1218610-mRNA-1:exon:28724;Parent=Msa1218610-mRNA-1
chr8_1	exon	81244978	81245102	81244978	ID=Msa1218610-mRNA-1:exon:28723;Parent=Msa1218610-mRNA-1
chr8_1	exon	81246468	81246576	81246468	ID=Msa1218610-mRNA-1:exon:28722;Parent=Msa1218610-mRNA-1
chr8_1	exon	81247852	81247986	81247852	ID=Msa1218610-mRNA-1:exon:28721;Parent=Msa1218610-mRNA-1
chr8_1	exon	81248396	81248542	81248396	ID=Msa1218610-mRNA-1:exon:28720;Parent=Msa1218610-mRNA-1
chr8_1	exon	81248927	81249428	81248927	ID=Msa1218610-mRNA-1:exon:28719;Parent=Msa1218610-mRNA-1
chr8_1	five_prime_UTR	81249236	81249428	81249236	ID=Msa1218610-mRNA-1:five_prime_utr;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81248927	81249235	81248927	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81248396	81248542	81248396	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81247852	81247986	81247852	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81246468	81246576	81246468	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81244978	81245102	81244978	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81244514	81244639	81244514	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81244348	81244428	81244348	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81243895	81243957	81243895	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81243735	81243809	81243735	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81243579	81243657	81243579	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81243404	81243531	81243404	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81243104	81243217	81243104	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81242768	81242881	81242768	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81242584	81242655	81242584	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81242436	81242459	81242436	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81242235	81242363	81242235	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1
chr8_1	CDS	81242115	81242153	81242115	ID=Msa1218610-mRNA-1:cds;Parent=Msa1218610-mRNA-1

Gene Sequence

>Msa1218610

ATGCAATCCTCTCTCTCACTCTCTTTCTCTCCCACTTCCTCTACCGCCAGATCACATCACTCTTTCCCACTCTCCACCGGCAAACCTCTCAACCTCCGTTTCTGCGGTTTGAGACGCGAGGCTTTGGGTTTAGGCTTTAAAACTTCCATCAACCGCAATATTCGCCAGATTCCCTGCCGTCAACACTCCGCCATAGTATCAGCTGCTCGCTCTGATAATGGCAGCACTACTGGATCCTTTGATTATGATTTGTTGATTATTGGTGCTGGTGTTGGTGGTCACGGTGCTGCTCTTCACGCTGTCGAGAAGGGATTGAAAACAGCTATAGTGGAAGGAGATGTGGTGGGAGGGACATGTGTAAACAGAGGTTGTGTTCCTTCAAAAGCTCTTTTGGCTGTTAGCGGTCGTATGCGGGAACTAAAGAGTGATCATCACTTGAAGTCATTGGGTTTACATGTTTCTTCTTCCGGGTATGACAGACAAGGAGTTGCTGATCATGCTAATAATCTTGCTTCCAAAATCCGTAGTAATCTGACAAACTCCCTAAAAGCGATAGGAGTAGACATACTTACCGGTTTTGGTACTATATTGGGTCCTCAAAAGGTGAAAATTGGCTCTTCAAACAACGTAGTAACTGCAAAAGATATCATCATTGCCACTGGTTCTGTTCCTTTCGTTCCTAAGGGTGTTGAAGTTGATGGGAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAATCTGTTCCTGATTGGATAGCAATTGTAGGGAGTGGGTATATTGGCCTTGAATTCAGTGACGTATATACGGCACTTGGAAGTGAGGTTACTTTTGTTGAAGCTTTAGATCAGCTTATGCCTGGATTTGATCCTGAAATCAGCAAGCTGGCTCAAAGGGTTCTTGTAAATCCCCGTAATATTGATTATCATACTGGAGTTTTTGCATCCAAGATCACACCTGCAAGGGATGGAAAACCTGTCTTGATCGAACTTATTGATGCAAAAACTAAGGAGCCAAAGGACACGTTGGAGGTTGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACACAAGGTCTAGGACTGGAGAATGTTGATGTGGCAACACAGCGAGGCTTTGTTCCTGTGGACGAGCGCATGCGTGTAATTGATGCAAATGGAAAGCTGGTACCTCATCTATACTGTATTGGAGACGCAAATGGAAAGATGATGCTTGCTCATGCCGCCAGTGCACAAGGAATTTCAGTATTACTGATTAAAAAGTTTCCAACAGTGGTTGAACAAGTCACTGGAAGAGATCACGTGCTCAATCATTTAAGTATCCCAGCTGCATGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAGGAGGGATTTGACGTTAGTGTTGCTAAAACGAGTTTTAAAGCTAACACGAAAGCCCTAGCAGAAAATGAAGGGGAGGGACTTGCCAAGTTGATATACAGACCTGACAATGGAGAGATTCTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCTAATGCTATAGCATTAGGAACACGTATTCAGGACATAAAATTTGCAGTTCATGCACATCCAACTCTGTCCGAGGTTCTTGATGAGCTATTTAAATCAGCAAAGGTTAAAGAACACGCTTCTATCCCAGGACTTCCAAAATATTACGCATCTTCAGGCGAAAGAGACGAGCACATTCAGAATCCTGTAAAAGAAGGGGGGAACCGTTTGAAGGAGATCGCCACTGATCTGATAATGGATACCCGACGAATGTTACTTTTTGGTTTTCCTAGTTGTAGTTATCGAGAAGGACTTTGA

Protein sequence

>Msa1218610

MQSSLSLSFSPTSSTARSHHSFPLSTGKPLNLRFCGLRREALGLGFKTSINRNIRQIPCRQHSAIVSAARSDNGSTTGSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSLGLHVSSSGYDRQGVADHANNLASKIRSNLTNSLKAIGVDILTGFGTILGPQKVKIGSSNNVVTAKDIIIATGSVPFVPKGVEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLVNPRNIDYHTGVFASKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTQGLGLENVDVATQRGFVPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVLLIKKFPTVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFDVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKEHASIPGLPKYYASSGERDEHIQNPVKEGGNRLKEIATDLIMDTRRMLLFGFPSCSYREGL*