AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0103850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103850 MtrunA17_Chr1g0157881 76.177 361 62 4 1 351 18 364 0.0 562
Msa0103850 MtrunA17_Chr1g0157861 80.453 353 47 4 1 351 1 333 0.0 555
Msa0103850 MtrunA17_Chr1g0157911 59.259 351 89 7 1 351 1 297 6.25e-135 401
Msa0103850 MtrunA17_Chr1g0157931 79.348 184 25 2 168 351 1 171 1.42e-99 306
Msa0103850 MtrunA17_Chr1g0158461 44.118 340 130 10 6 335 18 307 1.67e-79 246
Msa0103850 MtrunA17_Chr3g0088331 44.606 343 118 11 1 337 1 277 4.29e-78 241
Msa0103850 MtrunA17_Chr1g0158411 45.028 362 119 15 2 350 3 297 1.02e-77 253
Msa0103850 MtrunA17_Chr1g0158331 44.510 337 123 12 6 332 15 297 2.10e-75 236
Msa0103850 MtrunA17_Chr1g0158731 42.941 340 124 11 4 337 2 277 7.06e-75 234
Msa0103850 MtrunA17_Chr6g0467711 45.122 328 110 11 1 320 1 266 4.70e-70 232
Msa0103850 MtrunA17_Chr1g0157791 40.312 320 123 10 8 320 1 259 3.77e-65 219
Msa0103850 MtrunA17_Chr1g0158061 38.154 325 140 9 31 352 22 288 3.46e-63 203
Msa0103850 MtrunA17_Chr1g0158151 35.380 342 162 9 11 349 4 289 6.36e-59 202
Msa0103850 MtrunA17_Chr1g0157961 38.462 286 119 7 24 306 21 252 7.81e-58 189
Msa0103850 MtrunA17_Chr1g0157991 37.838 296 130 7 28 320 23 267 3.97e-56 194
Msa0103850 MtrunA17_Chr1g0158191 34.174 357 156 13 7 350 2 292 4.22e-49 175
Msa0103850 MtrunA17_Chr1g0158041 35.093 322 147 10 31 345 24 290 1.89e-47 171
Msa0103850 MtrunA17_Chr1g0158661 35.179 307 131 9 41 340 37 282 1.34e-41 154
Msa0103850 MtrunA17_Chr1g0158631 36.519 293 123 11 41 327 37 272 2.25e-41 154
Msa0103850 MtrunA17_Chr1g0158541 32.635 334 141 11 2 321 8 271 1.29e-39 149
Msa0103850 MtrunA17_Chr1g0158761 33.436 326 128 11 6 327 2 242 1.10e-38 145
Msa0103850 MtrunA17_Chr1g0158121 69.318 88 27 0 38 125 34 121 4.14e-37 130
Msa0103850 MtrunA17_Chr1g0158301 32.776 299 132 11 10 305 19 251 3.85e-35 136
Msa0103850 MtrunA17_Chr1g0160701 31.786 280 118 14 30 301 35 249 2.66e-22 98.2
Msa0103850 MtrunA17_Chr1g0158501 67.188 64 19 1 6 67 18 81 3.45e-22 94.4
Msa0103850 MtrunA17_Chr1g0158501 31.351 185 95 7 179 352 73 236 7.81e-13 67.8
Msa0103850 MtrunA17_Chr1g0160761 28.249 354 176 16 13 349 4 296 3.74e-19 89.0
Msa0103850 MtrunA17_Chr1g0160711 28.399 331 149 19 34 349 22 279 6.69e-19 88.2
Msa0103850 MtrunA17_Chr1g0160661 27.147 361 157 17 13 349 35 313 2.82e-15 77.0
Msa0103850 MtrunA17_Chr1g0160561 36.420 162 66 8 43 197 37 168 4.29e-15 76.6
Msa0103850 MtrunA17_Chr1g0160721 28.000 300 131 14 10 302 15 236 1.79e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTGGTAAGTTTGATA+TGG 0.216881 1_3:+11353689 None:intergenic
GTAGCACTACTACAATAATT+TGG 0.248373 1_3:+11354059 None:intergenic
GCAATCACCCTCTTCAATTC+CGG 0.315055 1_3:+11353787 None:intergenic
TGGGTGGATTTGAAGTTTCC+TGG 0.319867 1_3:-11351369 Msa0103850:CDS
GGCCATGTTTATGCCATTGC+TGG 0.338613 1_3:-11353488 Msa0103850:CDS
GTTTCTCTCAAATAGCAATC+TGG 0.355250 1_3:+11351313 None:intergenic
TTGATTACAGTGAAATTCAT+AGG 0.361521 1_3:-11351399 Msa0103850:CDS
CACAACGTTAACTTTGTTGT+TGG 0.369219 1_3:-11353867 Msa0103850:CDS
CAATCACCCTCTTCAATTCC+GGG 0.397957 1_3:+11353788 None:intergenic
TTTCATGTTGGTTGTGTCAC+TGG 0.405156 1_3:-11351235 Msa0103850:intron
CTGTAATCAAACATTTGATT+CGG 0.406857 1_3:+11351412 None:intergenic
ACAACGTTAACTTTGTTGTT+GGG 0.410688 1_3:-11353866 Msa0103850:CDS
ATATGCACCAGCTCTTACTT+TGG 0.413936 1_3:-11353642 Msa0103850:CDS
TGCCATTGCTGGGGATTTGA+AGG 0.417946 1_3:-11353477 Msa0103850:intron
TCCGTTATAACTACAGCTCT+CGG 0.433121 1_3:-11351501 Msa0103850:CDS
TTCGATAAACATTCGCAGCT+TGG 0.440851 1_3:+11350742 None:intergenic
GCCATGTTTATGCCATTGCT+GGG 0.454645 1_3:-11353487 Msa0103850:CDS
TTTCTCTCAAATAGCAATCT+GGG 0.466592 1_3:+11351314 None:intergenic
AAGAAGGTGGACAATTTGTC+TGG 0.470923 1_3:+11353990 None:intergenic
TTGTACGAAAACTTCCCATC+AGG 0.475937 1_3:+11351466 None:intergenic
CCCGAGAGCTGTAGTTATAA+CGG 0.476323 1_3:+11351500 None:intergenic
CCGTTATAACTACAGCTCTC+GGG 0.481206 1_3:-11351500 Msa0103850:CDS
TAGTATCAACTATTCTTCTC+TGG 0.485586 1_3:+11353675 None:intergenic
ATAACTACAGCTCTCGGGAT+TGG 0.490987 1_3:-11351495 Msa0103850:CDS
CGGGATTGGAATACTCCTGA+TGG 0.505230 1_3:-11351481 Msa0103850:CDS
TCGCAGGATAACTCGTACCT+CGG 0.505579 1_3:+11353899 None:intergenic
AAGTCCTGTGAGGGATGATC+CGG 0.508281 1_3:-11353558 Msa0103850:CDS
CTCGGATCACCACAGGTTGT+TGG 0.508336 1_3:+11353917 None:intergenic
AAACCCAGCGTTGTTCTACA+TGG 0.514357 1_3:+11351256 None:intergenic
TTCACAAGGACCACTCATCC+AGG 0.519175 1_3:+11351351 None:intergenic
AATTCATGTAAATTACGTGC+TGG 0.527621 1_3:+11353585 None:intergenic
GGATCATTCTTAAGTCGAAA+CGG 0.530152 1_3:+11353938 None:intergenic
GCGAATGTTTATCGAAGGTA+AGG 0.536070 1_3:-11350735 Msa0103850:CDS
CTCGTACCTCGGATCACCAC+AGG 0.550198 1_3:+11353910 None:intergenic
ATAAACATTCGCAGCTTGGA+TGG 0.554797 1_3:+11350746 None:intergenic
TGGAACATTTGTAATGATTG+AGG 0.557760 1_3:+11353605 None:intergenic
CAGTGAAATTCATAGGATGT+TGG 0.570931 1_3:-11351392 Msa0103850:CDS
ACATTTGATTCGGAACATCC+CGG 0.574196 1_3:+11351422 None:intergenic
GCTATTTGAGAGAAACCACT+TGG 0.577166 1_3:-11351306 Msa0103850:CDS
TTCAATAGAAAATAACAAAG+AGG 0.579557 1_3:+11351580 None:intergenic
CCCCAGCAATGGCATAAACA+TGG 0.580226 1_3:+11353486 None:intergenic
AGAACTGCCAAAGTAAGAGC+TGG 0.582036 1_3:+11353635 None:intergenic
TAGTCCATGTAGAACAACGC+TGG 0.583600 1_3:-11351260 Msa0103850:CDS
TTTGAAGTTTCCTGGATGAG+TGG 0.586344 1_3:-11351361 Msa0103850:CDS
GTTCATGCAAGAAGCTGCAT+CGG 0.589411 1_3:+11353529 None:intergenic
AGTCCATGTAGAACAACGCT+GGG 0.591218 1_3:-11351259 Msa0103850:CDS
ACAATCAGAATAGTTGATCC+CGG 0.595615 1_3:-11353806 Msa0103850:CDS
AACCTTCAAATCCCCAGCAA+TGG 0.596842 1_3:+11353475 None:intergenic
GGGATTGGAATACTCCTGAT+GGG 0.604401 1_3:-11351480 Msa0103850:CDS
CAAAGAGGCAACAAGGATGA+CGG 0.605599 1_3:+11351595 None:intergenic
AGTTGATCCCGGAATTGAAG+AGG 0.607068 1_3:-11353795 Msa0103850:CDS
GTCACATTCAAGACTCCAAG+TGG 0.612518 1_3:+11351291 None:intergenic
GTTGTTCTACATGGACTAGA+CGG 0.616095 1_3:+11351265 None:intergenic
ATTCATAGGATGTTGGTGGG+TGG 0.620524 1_3:-11351385 Msa0103850:CDS
AAAATAACAAAGAGGCAACA+AGG 0.621047 1_3:+11351588 None:intergenic
AATTGTCCACCTTCTTCATG+TGG 0.622393 1_3:-11353983 Msa0103850:CDS
ATGAACAAGTCGAATTCTCA+AGG 0.626361 1_3:-11353512 Msa0103850:CDS
GAAGCTGCATCGGCATACAC+CGG 0.626905 1_3:+11353539 None:intergenic
TGAAATTCATAGGATGTTGG+TGG 0.630171 1_3:-11351389 Msa0103850:CDS
GTTGATCCCGGAATTGAAGA+GGG 0.630549 1_3:-11353794 Msa0103850:CDS
AAGCTGCGAATGTTTATCGA+AGG 0.638591 1_3:-11350740 Msa0103850:CDS
TACACCGGATCATCCCTCAC+AGG 0.650574 1_3:+11353554 None:intergenic
AAATTGTATAAGTAATAGCG+AGG 0.652327 1_3:+11353755 None:intergenic
CCATGTTTATGCCATTGCTG+GGG 0.653515 1_3:-11353486 Msa0103850:CDS
AAGAATGATCCAACAACCTG+TGG 0.661242 1_3:-11353926 Msa0103850:CDS
CAACAACCTGTGGTGATCCG+AGG 0.671364 1_3:-11353916 Msa0103850:CDS
TTTCCACAATGATCTTCACA+AGG 0.675159 1_3:+11351337 None:intergenic
GAATTGTAGAAGTCCTGTGA+GGG 0.690462 1_3:-11353567 Msa0103850:CDS
GAAATTCATAGGATGTTGGT+GGG 0.698591 1_3:-11351388 Msa0103850:CDS
TGAATTGTAGAAGTCCTGTG+AGG 0.700551 1_3:-11353568 Msa0103850:CDS
GGTCCTTGTGAAGATCATTG+TGG 0.707489 1_3:-11351340 Msa0103850:CDS
GTTATCAGATGACTGTCACG+TGG 0.723731 1_3:-11351548 Msa0103850:CDS
AACAAGTCGAATTCTCAAGG+TGG 0.727769 1_3:-11353509 Msa0103850:CDS
TTTGATATGGATCAGCAGCG+TGG 0.746577 1_3:+11353702 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTCTTTATTTTAATTTT+AGG - chr1_3:11354036-11354055 Msa0103850:CDS 10.0%
!!! TTATACAATTTTAATTTCAG+CGG - chr1_3:11351066-11351085 Msa0103850:intron 15.0%
!! GAATATATAATAAAACCTAA+TGG + chr1_3:11351439-11351458 None:intergenic 15.0%
!! GAATATATAATAAAACCTAA+TGG + chr1_3:11351439-11351458 None:intergenic 15.0%
!! GATGTTAGATAATAAAGTAT+TGG - chr1_3:11351375-11351394 Msa0103850:CDS 20.0%
!! ACTCTAACTTACTAATATAA+AGG + chr1_3:11351416-11351435 None:intergenic 20.0%
!! CAATGACTTAATATTACAAA+AGG + chr1_3:11351470-11351489 None:intergenic 20.0%
!! TTCAATAGAAAATAACAAAG+AGG + chr1_3:11351528-11351547 None:intergenic 20.0%
!! TGAAACTTATATTGTTATCA+TGG - chr1_3:11351544-11351563 Msa0103850:CDS 20.0%
!!! ATAATTGATTCAATTCAGTT+TGG - chr1_3:11351658-11351677 Msa0103850:intron 20.0%
!!! TAATTGATTCAATTCAGTTT+GGG - chr1_3:11351659-11351678 Msa0103850:intron 20.0%
!!! TTGGTCTTTTAAATTTTTGT+TGG - chr1_3:11351757-11351776 Msa0103850:intron 20.0%
!!! TGTGTTTTTTTTCTTTTGTT+CGG - chr1_3:11351800-11351819 Msa0103850:intron 20.0%
!! GGAACTAATTAAAATACTAA+TGG + chr1_3:11351915-11351934 None:intergenic 20.0%
!!! TTTTGAATATTGTTGCATTT+AGG - chr1_3:11351939-11351958 Msa0103850:intron 20.0%
!! CAAAATAAAGAGAAAGTAAT+TGG - chr1_3:11352053-11352072 Msa0103850:intron 20.0%
!!! CTGATTTGATTTATTTTTCT+GGG - chr1_3:11352916-11352935 Msa0103850:intron 20.0%
!! GATGTTAGATAATAAAGTAT+TGG - chr1_3:11351375-11351394 Msa0103850:CDS 20.0%
!! ACTCTAACTTACTAATATAA+AGG + chr1_3:11351416-11351435 None:intergenic 20.0%
!! CAATGACTTAATATTACAAA+AGG + chr1_3:11351470-11351489 None:intergenic 20.0%
!! TTCAATAGAAAATAACAAAG+AGG + chr1_3:11351528-11351547 None:intergenic 20.0%
!!! TTATAACGGAAAAAAGATAT+CGG + chr1_3:11353298-11353317 None:intergenic 20.0%
!! ATGAGAAAATTGTTACAAAA+TGG + chr1_3:11353684-11353703 None:intergenic 20.0%
!! GATAAAATGAAACTATAACT+TGG - chr1_3:11353919-11353938 Msa0103850:CDS 20.0%
! AAATTGTATAAGTAATAGCG+AGG + chr1_3:11351057-11351076 None:intergenic 25.0%
!!! AAGTATTGGACTTAAGTTAT+TGG - chr1_3:11351389-11351408 Msa0103850:CDS 25.0%
!! AGTATTGGACTTAAGTTATT+GGG - chr1_3:11351390-11351409 Msa0103850:CDS 25.0%
! AAAAAAAACACAACCTACAA+GGG + chr1_3:11351792-11351811 None:intergenic 25.0%
! CTAATTAAAATACTAATGGC+TGG + chr1_3:11351911-11351930 None:intergenic 25.0%
! TGCAACAATATTCAAAACAA+TGG + chr1_3:11351936-11351955 None:intergenic 25.0%
!! TTAGTTTGGTTCAATTTGTT+TGG - chr1_3:11352254-11352273 Msa0103850:intron 25.0%
!! GTTCAATTTGTTTGGTTATT+GGG - chr1_3:11352262-11352281 Msa0103850:intron 25.0%
!!! AATTGGTTTGTTTGTTTGTT+TGG - chr1_3:11352305-11352324 Msa0103850:intron 25.0%
! TAATCAATCACAAGAATCAA+AGG + chr1_3:11352560-11352579 None:intergenic 25.0%
! CAATCAATCAAAAGAATCAA+AGG + chr1_3:11352628-11352647 None:intergenic 25.0%
!!! GCTGATTTGATTTATTTTTC+TGG - chr1_3:11352915-11352934 Msa0103850:intron 25.0%
!!! AAGTATTGGACTTAAGTTAT+TGG - chr1_3:11351389-11351408 Msa0103850:CDS 25.0%
!! AGTATTGGACTTAAGTTATT+GGG - chr1_3:11351390-11351409 Msa0103850:CDS 25.0%
!! TCGTACAAAGACAAATTTTA+TGG - chr1_3:11353358-11353377 Msa0103850:intron 25.0%
!! ACAAATTTTATGGATATGAC+CGG - chr1_3:11353368-11353387 Msa0103850:intron 25.0%
! CTGTAATCAAACATTTGATT+CGG + chr1_3:11353400-11353419 None:intergenic 25.0%
! TTGATTACAGTGAAATTCAT+AGG - chr1_3:11353410-11353429 Msa0103850:intron 25.0%
! AAATACTTGATAGAGAAAAG+CGG + chr1_3:11353735-11353754 None:intergenic 25.0%
! ATACATGTATGTCAATTCTA+TGG - chr1_3:11353942-11353961 Msa0103850:CDS 25.0%
GTAGCACTACTACAATAATT+TGG + chr1_3:11350753-11350772 None:intergenic 30.0%
! TTGATTTTACCACATGAAGA+AGG + chr1_3:11350838-11350857 None:intergenic 30.0%
!! ACAACGTTAACTTTGTTGTT+GGG - chr1_3:11350943-11350962 Msa0103850:intron 30.0%
TAGTATCAACTATTCTTCTC+TGG + chr1_3:11351137-11351156 None:intergenic 30.0%
TGGAACATTTGTAATGATTG+AGG + chr1_3:11351207-11351226 None:intergenic 30.0%
AATTCATGTAAATTACGTGC+TGG + chr1_3:11351227-11351246 None:intergenic 30.0%
TTAGTAAGTTAGAGTCCATT+AGG - chr1_3:11351421-11351440 Msa0103850:CDS 30.0%
AAAATAACAAAGAGGCAACA+AGG + chr1_3:11351520-11351539 None:intergenic 30.0%
! CTAATTTCCTCGTTCAATTT+TGG - chr1_3:11351709-11351728 Msa0103850:intron 30.0%
GAAAAAAAACACAACCTACA+AGG + chr1_3:11351793-11351812 None:intergenic 30.0%
! ATTTAAAGTTACGACTACCA+AGG - chr1_3:11351971-11351990 Msa0103850:intron 30.0%
TAACACACGAACAATTTGAT+TGG + chr1_3:11352001-11352020 None:intergenic 30.0%
! ATTGTTCGTGTGTTATTGTT+TGG - chr1_3:11352006-11352025 Msa0103850:intron 30.0%
GTTTGGCATATAATTCCTAA+TGG - chr1_3:11352023-11352042 Msa0103850:intron 30.0%
!!! AAGAGAAAGTAATTGGCTTT+TGG - chr1_3:11352060-11352079 Msa0103850:intron 30.0%
!!! AGAGAAAGTAATTGGCTTTT+GGG - chr1_3:11352061-11352080 Msa0103850:intron 30.0%
!!! TGTCCTGATTTAGTTTTGTT+CGG - chr1_3:11352230-11352249 Msa0103850:intron 30.0%
AAACCGAACAAAACTAAATC+AGG + chr1_3:11352236-11352255 None:intergenic 30.0%
!!! TAGTTTTGTTCGGTTTAGTT+TGG - chr1_3:11352240-11352259 Msa0103850:intron 30.0%
! GGTTCAATTTGTTTGGTTAT+TGG - chr1_3:11352261-11352280 Msa0103850:intron 30.0%
CAATCAGAAGAATCAAAAGA+GGG + chr1_3:11352415-11352434 None:intergenic 30.0%
TCAATCAGAAGAATCAAAAG+AGG + chr1_3:11352416-11352435 None:intergenic 30.0%
ATCAATCAGAAGAACCAAAA+GGG + chr1_3:11352456-11352475 None:intergenic 30.0%
AATCAATCAGAAGAACCAAA+AGG + chr1_3:11352457-11352476 None:intergenic 30.0%
CAATCAATCAGAAGAATCAA+AGG + chr1_3:11352419-11352438 None:intergenic 30.0%
CAATCAATCAGAAGAATCAA+AGG + chr1_3:11352419-11352438 None:intergenic 30.0%
CAATCAATCAGAAGAATCAA+AGG + chr1_3:11352419-11352438 None:intergenic 30.0%
CAATCAAAAGAATCAAAGGA+GGG + chr1_3:11352624-11352643 None:intergenic 30.0%
TCAATCAAAAGAATCAAAGG+AGG + chr1_3:11352625-11352644 None:intergenic 30.0%
CAATCAATCAGAAGAATCAA+AGG + chr1_3:11352419-11352438 None:intergenic 30.0%
TGCAATCAGAAGAATCAAAA+GGG + chr1_3:11352729-11352748 None:intergenic 30.0%
ACCAAAGAATCATCAAAAGT+GGG + chr1_3:11352757-11352776 None:intergenic 30.0%
AACCAAAGAATCATCAAAAG+TGG + chr1_3:11352758-11352777 None:intergenic 30.0%
!! TCTCTATTGGTTCTTATGTA+TGG - chr1_3:11352781-11352800 Msa0103850:intron 30.0%
CAAAGATAACTCACTTTAGT+TGG - chr1_3:11352862-11352881 Msa0103850:intron 30.0%
TTAGTAAGTTAGAGTCCATT+AGG - chr1_3:11351421-11351440 Msa0103850:CDS 30.0%
AAAATAACAAAGAGGCAACA+AGG + chr1_3:11351520-11351539 None:intergenic 30.0%
! CAAATTTTATGGATATGACC+GGG - chr1_3:11353369-11353388 Msa0103850:intron 30.0%
TTTCTCTCAAATAGCAATCT+GGG + chr1_3:11353498-11353517 None:intergenic 30.0%
ATTTCTCAACGTGATAACAA+AGG + chr1_3:11353648-11353667 None:intergenic 30.0%
!! CACTTGTTCATTTTGTTTGA+TGG - chr1_3:11353805-11353824 Msa0103850:CDS 30.0%
ATTAGCGACTTAACTCTTAA+AGG + chr1_3:11354012-11354031 None:intergenic 30.0%
! ATTTTACCACATGAAGAAGG+TGG + chr1_3:11350835-11350854 None:intergenic 35.0%
GGATCATTCTTAAGTCGAAA+CGG + chr1_3:11350874-11350893 None:intergenic 35.0%
! CACAACGTTAACTTTGTTGT+TGG - chr1_3:11350942-11350961 Msa0103850:intron 35.0%
ACAATCAGAATAGTTGATCC+CGG - chr1_3:11351003-11351022 Msa0103850:intron 35.0%
CTTCTCTGGTAAGTTTGATA+TGG + chr1_3:11351123-11351142 None:intergenic 35.0%
ATGAACAAGTCGAATTCTCA+AGG - chr1_3:11351297-11351316 Msa0103850:CDS 35.0%
! TATTGCCTTCCCAAAAGTAT+GGG - chr1_3:11351613-11351632 Msa0103850:intron 35.0%
! AAACACATCCCCATACTTTT+GGG + chr1_3:11351625-11351644 None:intergenic 35.0%
CCAAAATCCAAAATTGAACG+AGG + chr1_3:11351719-11351738 None:intergenic 35.0%
! CCTCGTTCAATTTTGGATTT+TGG - chr1_3:11351716-11351735 Msa0103850:intron 35.0%
! TGTTCGGTTCTTTTGTATGT+TGG - chr1_3:11351816-11351835 Msa0103850:intron 35.0%
AAACAACCAAGACACACAAT+TGG + chr1_3:11351869-11351888 None:intergenic 35.0%
ACAATTTGATTGGTACTCCT+TGG + chr1_3:11351991-11352010 None:intergenic 35.0%
!! TTATTTTGCTTGCTGCCATT+AGG + chr1_3:11352041-11352060 None:intergenic 35.0%
TGTTTCATTGTGTCTGTGTT+TGG - chr1_3:11352119-11352138 Msa0103850:intron 35.0%
TGTGTCTGTGTTTGGTTAAT+TGG - chr1_3:11352127-11352146 Msa0103850:intron 35.0%
TCAGATTGTCTTAGTTCGTT+TGG - chr1_3:11352182-11352201 Msa0103850:intron 35.0%
TTGTCTTAGTTCGTTTGGTT+CGG - chr1_3:11352187-11352206 Msa0103850:intron 35.0%
GTCAAAATAGTGCTCACAAT+TGG - chr1_3:11352288-11352307 Msa0103850:intron 35.0%
!! TGGTTTGTTTGTTTGTTTGG+TGG - chr1_3:11352308-11352327 Msa0103850:intron 35.0%
! GGTTTGTTTGTTTGTTTGGT+GGG - chr1_3:11352309-11352328 Msa0103850:intron 35.0%
GTGAGTTTGTACTCACAATT+TGG - chr1_3:11352351-11352370 Msa0103850:intron 35.0%
GGAGAAGAAACCAAATTATG+AGG + chr1_3:11352394-11352413 None:intergenic 35.0%
TCAATCAGAAGAACCAAAAG+GGG + chr1_3:11352455-11352474 None:intergenic 35.0%
CAATCAGAAGAATCAAAGGA+AGG + chr1_3:11352488-11352507 None:intergenic 35.0%
CAATCAGAAGAATCAAAGGA+GGG + chr1_3:11352488-11352507 None:intergenic 35.0%
TCAATCAGAAGAATCAAAGG+AGG + chr1_3:11352489-11352508 None:intergenic 35.0%
CAATCACAAGAATCAAAGGA+GGG + chr1_3:11352556-11352575 None:intergenic 35.0%
TCAATCACAAGAATCAAAGG+AGG + chr1_3:11352557-11352576 None:intergenic 35.0%
CAATCAGAAGAATCAAAGGA+AGG + chr1_3:11352488-11352507 None:intergenic 35.0%
CAATCAGAAGAATCAAAGGA+GGG + chr1_3:11352488-11352507 None:intergenic 35.0%
TCAATCAGAAGAATCAAAGG+AGG + chr1_3:11352489-11352508 None:intergenic 35.0%
GCAATCAGAAGAATCAAAAG+GGG + chr1_3:11352728-11352747 None:intergenic 35.0%
GTGCAATCAGAAGAATCAAA+AGG + chr1_3:11352730-11352749 None:intergenic 35.0%
!! TCCCACTTTTGATGATTCTT+TGG - chr1_3:11352753-11352772 Msa0103850:intron 35.0%
TTCTTTGGTTGCTTCTCTAT+TGG - chr1_3:11352768-11352787 Msa0103850:intron 35.0%
TTGACTCATTGTGAGTTTGA+GGG - chr1_3:11353054-11353073 Msa0103850:intron 35.0%
CAGTGAAATTCATAGGATGT+TGG - chr1_3:11353417-11353436 Msa0103850:intron 35.0%
TGAAATTCATAGGATGTTGG+TGG - chr1_3:11353420-11353439 Msa0103850:intron 35.0%
GAAATTCATAGGATGTTGGT+GGG - chr1_3:11353421-11353440 Msa0103850:intron 35.0%
TTTCCACAATGATCTTCACA+AGG + chr1_3:11353475-11353494 None:intergenic 35.0%
GTTTCTCTCAAATAGCAATC+TGG + chr1_3:11353499-11353518 None:intergenic 35.0%
AAGAAGGTGGACAATTTGTC+TGG + chr1_3:11350822-11350841 None:intergenic 40.0%
AATTGTCCACCTTCTTCATG+TGG - chr1_3:11350826-11350845 Msa0103850:intron 40.0%
AAGAATGATCCAACAACCTG+TGG - chr1_3:11350883-11350902 Msa0103850:intron 40.0%
ATATGCACCAGCTCTTACTT+TGG - chr1_3:11351167-11351186 Msa0103850:intron 40.0%
TGAATTGTAGAAGTCCTGTG+AGG - chr1_3:11351241-11351260 Msa0103850:CDS 40.0%
GAATTGTAGAAGTCCTGTGA+GGG - chr1_3:11351242-11351261 Msa0103850:CDS 40.0%
AACAAGTCGAATTCTCAAGG+TGG - chr1_3:11351300-11351319 Msa0103850:CDS 40.0%
!! TACTTTTGGGAAGGCAATAG+CGG + chr1_3:11351612-11351631 None:intergenic 40.0%
CTATTGCCTTCCCAAAAGTA+TGG - chr1_3:11351612-11351631 Msa0103850:intron 40.0%
! ATTGCCTTCCCAAAAGTATG+GGG - chr1_3:11351614-11351633 Msa0103850:intron 40.0%
! CAAACACATCCCCATACTTT+TGG + chr1_3:11351626-11351645 None:intergenic 40.0%
! CAAAAGTATGGGGATGTGTT+TGG - chr1_3:11351624-11351643 Msa0103850:intron 40.0%
GTTTCTCGTCGAATTAGTGT+TGG - chr1_3:11351738-11351757 Msa0103850:intron 40.0%
TTGGTTGTGATTTCCCTTGT+AGG - chr1_3:11351776-11351795 Msa0103850:intron 40.0%
! TTTTGTATGTTGGACGTCGT+GGG - chr1_3:11351826-11351845 Msa0103850:intron 40.0%
TTTGGGTGTGTAATTCTCTC+TGG - chr1_3:11352078-11352097 Msa0103850:intron 40.0%
TTGGGTGTGTAATTCTCTCT+GGG - chr1_3:11352079-11352098 Msa0103850:intron 40.0%
GTTGTGTCTATGTCTGTCTA+TGG - chr1_3:11352149-11352168 Msa0103850:intron 40.0%
ATGTCTGTCTATGGTTGCTT+TGG - chr1_3:11352158-11352177 Msa0103850:intron 40.0%
!!! TCGTTTGGTTCGGTTTGTTT+TGG - chr1_3:11352197-11352216 Msa0103850:intron 40.0%
! TGTTTGGTGGGTAAGTGATA+TGG - chr1_3:11352321-11352340 Msa0103850:intron 40.0%
GGGTAAGTGATATGGTTGTT+TGG - chr1_3:11352329-11352348 Msa0103850:intron 40.0%
GTACTCACAATTTGGTTGCT+TGG - chr1_3:11352359-11352378 Msa0103850:intron 40.0%
GTGAACGTGTCCTCATAATT+TGG - chr1_3:11352381-11352400 Msa0103850:intron 40.0%
CAATCAGAAGAACCAAAAGG+GGG + chr1_3:11352454-11352473 None:intergenic 40.0%
TGCAACGAGAAGAACCAAAA+GGG + chr1_3:11352695-11352714 None:intergenic 40.0%
ATGCAACGAGAAGAACCAAA+AGG + chr1_3:11352696-11352715 None:intergenic 40.0%
!! TCTCTGCTGGTTCTATTGTT+TGG - chr1_3:11352811-11352830 Msa0103850:intron 40.0%
!! TGCTGGTTCTATTGTTTGGA+TGG - chr1_3:11352815-11352834 Msa0103850:intron 40.0%
CTTAGTAAGCTTCAGCTTGA+GGG - chr1_3:11352961-11352980 Msa0103850:intron 40.0%
TTAGTAAGCTTCAGCTTGAG+GGG - chr1_3:11352962-11352981 Msa0103850:intron 40.0%
! GTTGACTCATTGTGAGTTTG+AGG - chr1_3:11353053-11353072 Msa0103850:intron 40.0%
TCCGTTATAACTACAGCTCT+CGG - chr1_3:11353308-11353327 Msa0103850:intron 40.0%
TTGTACGAAAACTTCCCATC+AGG + chr1_3:11353346-11353365 None:intergenic 40.0%
!! ACATTTGATTCGGAACATCC+CGG + chr1_3:11353390-11353409 None:intergenic 40.0%
! TTTGAAGTTTCCTGGATGAG+TGG - chr1_3:11353448-11353467 Msa0103850:intron 40.0%
GCTATTTGAGAGAAACCACT+TGG - chr1_3:11353503-11353522 Msa0103850:CDS 40.0%
!! GTTGTTCTACATGGACTAGA+CGG + chr1_3:11353547-11353566 None:intergenic 40.0%
! TTTCATGTTGGTTGTGTCAC+TGG - chr1_3:11353574-11353593 Msa0103850:CDS 40.0%
ATAAACATTCGCAGCTTGGA+TGG + chr1_3:11354066-11354085 None:intergenic 40.0%
TTCGATAAACATTCGCAGCT+TGG + chr1_3:11354070-11354089 None:intergenic 40.0%
AAGCTGCGAATGTTTATCGA+AGG - chr1_3:11354069-11354088 Msa0103850:CDS 40.0%
GCGAATGTTTATCGAAGGTA+AGG - chr1_3:11354074-11354093 Msa0103850:CDS 40.0%
!!! CGTTGTGATGTTGTTTTCGC+AGG + chr1_3:11350929-11350948 None:intergenic 45.0%
AGTTGATCCCGGAATTGAAG+AGG - chr1_3:11351014-11351033 Msa0103850:intron 45.0%
GTTGATCCCGGAATTGAAGA+GGG - chr1_3:11351015-11351034 Msa0103850:intron 45.0%
CAATCACCCTCTTCAATTCC+GGG + chr1_3:11351024-11351043 None:intergenic 45.0%
GCAATCACCCTCTTCAATTC+CGG + chr1_3:11351025-11351044 None:intergenic 45.0%
TTTGATATGGATCAGCAGCG+TGG + chr1_3:11351110-11351129 None:intergenic 45.0%
AGAACTGCCAAAGTAAGAGC+TGG + chr1_3:11351177-11351196 None:intergenic 45.0%
GTTCATGCAAGAAGCTGCAT+CGG + chr1_3:11351283-11351302 None:intergenic 45.0%
GCCATGTTTATGCCATTGCT+GGG - chr1_3:11351322-11351341 Msa0103850:CDS 45.0%
CCATGTTTATGCCATTGCTG+GGG - chr1_3:11351323-11351342 Msa0103850:CDS 45.0%
AACCTTCAAATCCCCAGCAA+TGG + chr1_3:11351337-11351356 None:intergenic 45.0%
CAAAGAGGCAACAAGGATGA+CGG + chr1_3:11351513-11351532 None:intergenic 45.0%
GAAGCACAAGCAATCTAAGG+CGG + chr1_3:11351590-11351609 None:intergenic 45.0%
!! ACATCCCCATACTTTTGGGA+AGG + chr1_3:11351621-11351640 None:intergenic 45.0%
GTATGGGGATGTGTTTGGTT+TGG - chr1_3:11351629-11351648 Msa0103850:intron 45.0%
! CTTTTGTATGTTGGACGTCG+TGG - chr1_3:11351825-11351844 Msa0103850:intron 45.0%
CGTGGGAATGTTTGATTGCT+TGG - chr1_3:11351843-11351862 Msa0103850:intron 45.0%
! ATTGCACTTTTCCCCCCTTT+TGG - chr1_3:11352678-11352697 Msa0103850:intron 45.0%
AACGAGAAGAACCAAAAGGG+GGG + chr1_3:11352692-11352711 None:intergenic 45.0%
CAACGAGAAGAACCAAAAGG+GGG + chr1_3:11352693-11352712 None:intergenic 45.0%
GCAACGAGAAGAACCAAAAG+GGG + chr1_3:11352694-11352713 None:intergenic 45.0%
TCAGCTGTCAGCAAAACCAA+TGG + chr1_3:11352900-11352919 None:intergenic 45.0%
GCTTAGTAAGCTTCAGCTTG+AGG - chr1_3:11352960-11352979 Msa0103850:intron 45.0%
CAAAGAGGCAACAAGGATGA+CGG + chr1_3:11351513-11351532 None:intergenic 45.0%
GTTATCAGATGACTGTCACG+TGG - chr1_3:11353261-11353280 Msa0103850:intron 45.0%
CCCGAGAGCTGTAGTTATAA+CGG + chr1_3:11353312-11353331 None:intergenic 45.0%
CCGTTATAACTACAGCTCTC+GGG - chr1_3:11353309-11353328 Msa0103850:intron 45.0%
ATAACTACAGCTCTCGGGAT+TGG - chr1_3:11353314-11353333 Msa0103850:intron 45.0%
GGGATTGGAATACTCCTGAT+GGG - chr1_3:11353329-11353348 Msa0103850:intron 45.0%
! ATTCATAGGATGTTGGTGGG+TGG - chr1_3:11353424-11353443 Msa0103850:intron 45.0%
! TGGGTGGATTTGAAGTTTCC+TGG - chr1_3:11353440-11353459 Msa0103850:intron 45.0%
GGTCCTTGTGAAGATCATTG+TGG - chr1_3:11353469-11353488 Msa0103850:intron 45.0%
GTCACATTCAAGACTCCAAG+TGG + chr1_3:11353521-11353540 None:intergenic 45.0%
TAGTCCATGTAGAACAACGC+TGG - chr1_3:11353549-11353568 Msa0103850:CDS 45.0%
AGTCCATGTAGAACAACGCT+GGG - chr1_3:11353550-11353569 Msa0103850:CDS 45.0%
AAACCCAGCGTTGTTCTACA+TGG + chr1_3:11353556-11353575 None:intergenic 45.0%
! ACAACGCTGGGTTTTCATGT+TGG - chr1_3:11353562-11353581 Msa0103850:CDS 45.0%
TCGCAGGATAACTCGTACCT+CGG + chr1_3:11350913-11350932 None:intergenic 50.0%
AAGTCCTGTGAGGGATGATC+CGG - chr1_3:11351251-11351270 Msa0103850:CDS 50.0%
GGCCATGTTTATGCCATTGC+TGG - chr1_3:11351321-11351340 Msa0103850:CDS 50.0%
CCCCAGCAATGGCATAAACA+TGG + chr1_3:11351326-11351345 None:intergenic 50.0%
TGCCATTGCTGGGGATTTGA+AGG - chr1_3:11351332-11351351 Msa0103850:CDS 50.0%
! GCGGAAGCACAAGCAATCTA+AGG + chr1_3:11351593-11351612 None:intergenic 50.0%
GCTTGGCCAATTGTGTGTCT+TGG - chr1_3:11351860-11351879 Msa0103850:intron 50.0%
! CATTGCACTTCTCCCCCTTT+TGG - chr1_3:11352439-11352458 Msa0103850:intron 50.0%
TTGGTTGCTGCTCTCTCCAT+TGG - chr1_3:11352881-11352900 Msa0103850:intron 50.0%
CGGGATTGGAATACTCCTGA+TGG - chr1_3:11353328-11353347 Msa0103850:intron 50.0%
TTCACAAGGACCACTCATCC+AGG + chr1_3:11353461-11353480 None:intergenic 50.0%
CTCGGATCACCACAGGTTGT+TGG + chr1_3:11350895-11350914 None:intergenic 55.0%
CAACAACCTGTGGTGATCCG+AGG - chr1_3:11350893-11350912 Msa0103850:intron 55.0%
TACACCGGATCATCCCTCAC+AGG + chr1_3:11351258-11351277 None:intergenic 55.0%
! GAAGCTGCATCGGCATACAC+CGG + chr1_3:11351273-11351292 None:intergenic 55.0%
! GGCAACAAGGATGACGGCTA+GGG + chr1_3:11351507-11351526 None:intergenic 55.0%
! AGGCAACAAGGATGACGGCT+AGG + chr1_3:11351508-11351527 None:intergenic 55.0%
GTATGGCTGCTTCTCTCTGC+TGG - chr1_3:11352798-11352817 Msa0103850:intron 55.0%
! GGCAACAAGGATGACGGCTA+GGG + chr1_3:11351507-11351526 None:intergenic 55.0%
! AGGCAACAAGGATGACGGCT+AGG + chr1_3:11351508-11351527 None:intergenic 55.0%
CTCGTACCTCGGATCACCAC+AGG + chr1_3:11350902-11350921 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 11350718 11354113 11350718 ID=Msa0103850;Name=Msa0103850
chr1_3 mRNA 11350718 11354113 11350718 ID=Msa0103850-mRNA-1;Parent=Msa0103850;Name=Msa0103850-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0|1|1|1|3|0|357
chr1_3 exon 11353478 11354113 11353478 ID=Msa0103850-mRNA-1:exon:4638;Parent=Msa0103850-mRNA-1
chr1_3 exon 11351236 11351617 11351236 ID=Msa0103850-mRNA-1:exon:4637;Parent=Msa0103850-mRNA-1
chr1_3 exon 11350718 11350773 11350718 ID=Msa0103850-mRNA-1:exon:4636;Parent=Msa0103850-mRNA-1
chr1_3 CDS 11353478 11354113 11353478 ID=Msa0103850-mRNA-1:cds;Parent=Msa0103850-mRNA-1
chr1_3 CDS 11351236 11351617 11351236 ID=Msa0103850-mRNA-1:cds;Parent=Msa0103850-mRNA-1
chr1_3 CDS 11350718 11350773 11350718 ID=Msa0103850-mRNA-1:cds;Parent=Msa0103850-mRNA-1
Gene Sequence

>Msa0103850

ATGTGCAGAGAAAAATCATTCTTATTCTTAATCCAAATTATTGTAGTAGTGCTACTACTGCATCAGCATCAAACATGTGATGCAATTACAAATAGTAATAACCAGACAAATTGTCCACCTTCTTCATGTGGTAAAATCAACAACATAAAATATCCGTTTCGACTTAAGAATGATCCAACAACCTGTGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAACATCACAACGTTAACTTTGTTGTTGGGTAAATACTATGTGAAATCAATCAACTACAATAACTACACAATCAGAATAGTTGATCCCGGAATTGAAGAGGGTGATTGCTCGTCATTTCCTCGCTATTACTTATACAATTTTAATTTCAGCGGCTCTTACAATTATAGCTACCACGCTGCTGATCCATATCAAACTTACCAGAGAAGAATAGTTGATACTACTATATATAAATATGCACCAGCTCTTACTTTGGCAGTTCTTAAAAGTCCTCAATCATTACAAATGTTCCAGCACGTAATTTACATGAATTGTAGAAGTCCTGTGAGGGATGATCCGGTGTATGCCGATGCAGCTTCTTGCATGAACAAGTCGAATTCTCAAGGTGGCCATGTTTATGCCATTGCTGGGGATTTGAAGCCGTCATCCTTGTTGCCTCTTTGTTATTTTCTATTGAAACTTATATTGTTATCAGATGACTGTCACGTGGAGCTTGTTACGCCGATATCTTTTTTCCGTTATAACTACAGCTCTCGGGATTGGAATACTCCTGATGGGAAGTTTTCGTACAAAGACAAATTTTATGGATATGACCGGGATGTTCCGAATCAAATGTTTGATTACAGTGAAATTCATAGGATGTTGGTGGGTGGATTTGAAGTTTCCTGGATGAGTGGTCCTTGTGAAGATCATTGTGGAAACCCAGATTGCTATTTGAGAGAAACCACTTGGAGTCTTGAATGTGACAATCCGTCTAGTCCATGTAGAACAACGCTGGGTTTTCATGTTGGTTGTGTCACTGGAACTCCATCCAAGCTGCGAATGTTTATCGAAGGTAAGGAGAAATTTGTCCTCTAA

Protein sequence

>Msa0103850

MCREKSFLFLIQIIVVVLLLHQHQTCDAITNSNNQTNCPPSSCGKINNIKYPFRLKNDPTTCGDPRYELSCENNITTLTLLLGKYYVKSINYNNYTIRIVDPGIEEGDCSSFPRYYLYNFNFSGSYNYSYHAADPYQTYQRRIVDTTIYKYAPALTLAVLKSPQSLQMFQHVIYMNCRSPVRDDPVYADAASCMNKSNSQGGHVYAIAGDLKPSSLLPLCYFLLKLILLSDDCHVELVTPISFFRYNYSSRDWNTPDGKFSYKDKFYGYDRDVPNQMFDYSEIHRMLVGGFEVSWMSGPCEDHCGNPDCYLRETTWSLECDNPSSPCRTTLGFHVGCVTGTPSKLRMFIEGKEKFVL*