Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150350 | XP_013466271.1 | 77.821 | 257 | 28 | 2 | 25 | 252 | 25 | 281 | 2.15e-132 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150350 | sp|P93604|LRK10_WHEAT | 32.927 | 82 | 55 | 0 | 170 | 251 | 277 | 358 | 8.24e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150350 | A0A072VEV2 | 77.821 | 257 | 28 | 2 | 25 | 252 | 25 | 281 | 1.03e-132 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009340 | Msa0150350 | 0.829097 | 6.228572e-55 | -8.615850e-47 |
| Msa0059140 | Msa0150350 | 0.832225 | 1.067388e-55 | -8.615850e-47 |
| Msa0103850 | Msa0150350 | 0.810686 | 1.018873e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150350 | MtrunA17_Chr1g0157871 | 77.821 | 257 | 28 | 2 | 25 | 252 | 25 | 281 | 1.97e-136 | 395 |
| Msa0150350 | MtrunA17_Chr1g0157941 | 63.380 | 284 | 67 | 4 | 1 | 252 | 1 | 279 | 5.68e-108 | 323 |
| Msa0150350 | MtrunA17_Chr1g0157891 | 71.154 | 208 | 31 | 2 | 13 | 191 | 56 | 263 | 6.82e-99 | 289 |
| Msa0150350 | MtrunA17_Chr1g0158711 | 45.926 | 270 | 105 | 9 | 18 | 252 | 18 | 281 | 1.11e-67 | 219 |
| Msa0150350 | MtrunA17_Chr1g0158391 | 45.196 | 281 | 115 | 10 | 3 | 252 | 5 | 277 | 1.45e-64 | 210 |
| Msa0150350 | MtrunA17_Chr1g0158361 | 39.384 | 292 | 112 | 7 | 19 | 249 | 22 | 309 | 1.91e-62 | 198 |
| Msa0150350 | MtrunA17_Chr6g0467681 | 44.863 | 292 | 100 | 11 | 5 | 252 | 10 | 284 | 3.37e-59 | 196 |
| Msa0150350 | MtrunA17_Chr3g0088341 | 40.196 | 306 | 112 | 9 | 10 | 252 | 1 | 298 | 3.43e-59 | 197 |
| Msa0150350 | MtrunA17_Chr6g0467661 | 44.521 | 292 | 101 | 11 | 5 | 252 | 10 | 284 | 3.89e-58 | 194 |
| Msa0150350 | MtrunA17_Chr1g0158471 | 40.333 | 300 | 120 | 7 | 2 | 252 | 9 | 298 | 6.68e-58 | 193 |
| Msa0150350 | MtrunA17_Chr1g0158511 | 40.268 | 298 | 123 | 6 | 2 | 252 | 9 | 298 | 1.49e-57 | 192 |
| Msa0150350 | MtrunA17_Chr1g0158181 | 37.383 | 321 | 126 | 9 | 4 | 252 | 29 | 346 | 3.55e-50 | 173 |
| Msa0150350 | MtrunA17_Chr1g0158051 | 36.986 | 292 | 131 | 6 | 9 | 252 | 38 | 324 | 2.52e-49 | 171 |
| Msa0150350 | MtrunA17_Chr6g0467641 | 44.186 | 258 | 80 | 10 | 5 | 252 | 10 | 213 | 9.33e-49 | 167 |
| Msa0150350 | MtrunA17_Chr1g0157801 | 36.594 | 276 | 123 | 7 | 24 | 252 | 48 | 318 | 3.21e-45 | 159 |
| Msa0150350 | MtrunA17_Chr1g0157781 | 35.688 | 269 | 121 | 7 | 31 | 252 | 60 | 323 | 1.41e-42 | 152 |
| Msa0150350 | MtrunA17_Chr1g0158651 | 37.358 | 265 | 129 | 9 | 21 | 252 | 67 | 327 | 7.00e-42 | 150 |
| Msa0150350 | MtrunA17_Chr1g0158101 | 36.397 | 272 | 119 | 6 | 31 | 252 | 61 | 328 | 4.60e-41 | 148 |
| Msa0150350 | MtrunA17_Chr1g0157971 | 35.094 | 265 | 128 | 4 | 31 | 252 | 59 | 322 | 1.43e-40 | 147 |
| Msa0150350 | MtrunA17_Chr1g0158531 | 36.630 | 273 | 124 | 10 | 22 | 252 | 45 | 310 | 1.03e-37 | 139 |
| Msa0150350 | MtrunA17_Chr1g0158311 | 36.538 | 260 | 120 | 9 | 31 | 252 | 56 | 308 | 1.20e-34 | 130 |
| Msa0150350 | MtrunA17_Chr1g0160771 | 33.453 | 278 | 136 | 8 | 17 | 252 | 51 | 321 | 1.62e-28 | 113 |
| Msa0150350 | MtrunA17_Chr1g0160581 | 32.364 | 275 | 128 | 9 | 31 | 252 | 56 | 325 | 1.15e-27 | 110 |
| Msa0150350 | MtrunA17_Chr1g0160731 | 31.061 | 264 | 137 | 7 | 31 | 252 | 57 | 317 | 3.74e-26 | 106 |
| Msa0150350 | MtrunA17_Chr1g0158771 | 30.233 | 258 | 132 | 9 | 31 | 252 | 64 | 309 | 1.62e-24 | 102 |
| Msa0150350 | MtrunA17_Chr1g0158611 | 60.563 | 71 | 28 | 0 | 182 | 252 | 1 | 71 | 1.78e-24 | 100 |
| Msa0150350 | MtrunA17_Chr6g0467701 | 83.019 | 53 | 9 | 0 | 200 | 252 | 2 | 54 | 7.81e-24 | 98.2 |
| Msa0150350 | MtrunA17_Chr1g0158321 | 79.245 | 53 | 11 | 0 | 200 | 252 | 2 | 54 | 4.59e-22 | 93.2 |
| Msa0150350 | MtrunA17_Chr4g0037001 | 29.455 | 275 | 129 | 10 | 31 | 252 | 66 | 328 | 1.71e-18 | 84.3 |
| Msa0150350 | MtrunA17_Chr1g0160681 | 46.914 | 81 | 43 | 0 | 172 | 252 | 5 | 85 | 3.14e-17 | 80.1 |
| Msa0150350 | MtrunA17_Chr1g0209481 | 29.365 | 126 | 75 | 2 | 140 | 251 | 102 | 227 | 9.63e-13 | 67.0 |
| Msa0150350 | MtrunA17_Chr1g0209511 | 33.594 | 128 | 75 | 4 | 133 | 251 | 210 | 336 | 1.24e-12 | 67.0 |
| Msa0150350 | MtrunA17_Chr7g0232441 | 30.508 | 118 | 71 | 2 | 140 | 252 | 232 | 343 | 3.27e-12 | 65.9 |
| Msa0150350 | MtrunA17_Chr6g0483791 | 40.816 | 98 | 53 | 2 | 157 | 251 | 294 | 389 | 4.21e-12 | 65.5 |
| Msa0150350 | MtrunA17_Chr7g0250741 | 51.020 | 49 | 24 | 0 | 203 | 251 | 505 | 553 | 3.05e-11 | 63.2 |
| Msa0150350 | MtrunA17_Chr8g0391231 | 40.000 | 100 | 49 | 4 | 161 | 251 | 257 | 354 | 3.45e-11 | 62.8 |
| Msa0150350 | MtrunA17_Chr1g0209501 | 36.145 | 83 | 50 | 1 | 169 | 251 | 249 | 328 | 3.70e-11 | 62.8 |
| Msa0150350 | MtrunA17_Chr4g0022331 | 55.556 | 45 | 20 | 0 | 207 | 251 | 507 | 551 | 5.65e-11 | 62.4 |
| Msa0150350 | MtrunA17_Chr7g0251081 | 34.426 | 122 | 59 | 5 | 151 | 251 | 23 | 144 | 6.42e-11 | 61.6 |
| Msa0150350 | MtrunA17_Chr6g0483981 | 52.632 | 57 | 25 | 1 | 195 | 251 | 233 | 287 | 6.53e-11 | 62.0 |
| Msa0150350 | MtrunA17_Chr1g0212821 | 35.484 | 93 | 48 | 1 | 171 | 251 | 9 | 101 | 7.92e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGTTACTAAAATAA+TGG | 0.242903 | 1_4:-11664144 | Msa0150340:intron |
| CTTGTACACCAGGGTTTCTT+TGG | 0.261545 | 1_4:-11663902 | Msa0150340:intron |
| TTACGAGAGTGTCGTCGATT+TGG | 0.334087 | 1_4:+11663959 | Msa0150350:CDS |
| CTATCAATGAACCTTGTAAA+TGG | 0.351421 | 1_4:+11663588 | Msa0150350:CDS |
| GCTCATGGAGCTGTCTATAA+AGG | 0.364308 | 1_4:+11664459 | Msa0150350:CDS |
| TAAGGATCAGTGGCATATAT+TGG | 0.369655 | 1_4:-11663939 | Msa0150340:intron |
| ATCATATACTAAACATTGAC+TGG | 0.381226 | 1_4:-11664087 | Msa0150340:intron |
| TGAGTTTCTTCTTTGATTTG+TGG | 0.418600 | 1_4:-11664118 | Msa0150340:intron |
| AATTGTTGGTTCAACTATGC+TGG | 0.452324 | 1_4:+11664263 | Msa0150350:CDS |
| GAGTGCACCATCTGAAAAGC+TGG | 0.455004 | 1_4:+11663877 | Msa0150350:CDS |
| GACAGTTGTGTGGGTCAGAT+AGG | 0.464998 | 1_4:-11663755 | Msa0150340:intron |
| TGCAATCTATGTCACTGATA+AGG | 0.468171 | 1_4:-11663716 | Msa0150340:intron |
| TATTGTTCTGACCATTTACA+AGG | 0.484691 | 1_4:-11663599 | Msa0150340:intron |
| TCTGCATAAGAAAATCTAGT+TGG | 0.512760 | 1_4:-11664390 | Msa0150340:intron |
| TTCCAATCAGATTCTTCCAA+CGG | 0.514491 | 1_4:+11663822 | Msa0150350:intron |
| CTTGAACAAGATAAACGAAA+GGG | 0.516549 | 1_4:-11663642 | Msa0150340:intron |
| ACCCACACAACTGTCTTCCT+AGG | 0.529199 | 1_4:+11663763 | Msa0150350:CDS |
| GAATTTGCAGGAGCAATTGT+TGG | 0.534993 | 1_4:+11664249 | Msa0150350:intron |
| GATCAATTCAAAGAAAAGCT+TGG | 0.540295 | 1_4:+11664429 | Msa0150350:CDS |
| AAGCTTGGCGAAGGAGCTCA+TGG | 0.549645 | 1_4:+11664444 | Msa0150350:CDS |
| ATATCAAAATGTCCTGAGAC+CGG | 0.562841 | 1_4:-11664020 | Msa0150340:intron |
| TATTGTGAGTGACATGTTGA+AGG | 0.570873 | 1_4:-11663547 | Msa0150340:intron |
| TAAACGAAAGGGGCATTCAA+AGG | 0.571659 | 1_4:-11663631 | Msa0150340:intron |
| TTCAAAGAAAAGCTTGGCGA+AGG | 0.584892 | 1_4:+11664435 | Msa0150350:CDS |
| AGCTGGGACCAAAGAAACCC+TGG | 0.590213 | 1_4:+11663894 | Msa0150350:CDS |
| GACAACATATCTTGTACACC+AGG | 0.593647 | 1_4:-11663912 | Msa0150340:intron |
| ACCTAGGAAGACAGTTGTGT+GGG | 0.600615 | 1_4:-11663764 | Msa0150340:intron |
| AAATCGACGACACTCTCGTA+AGG | 0.623551 | 1_4:-11663957 | Msa0150340:intron |
| GACACTCTCGTAAGGATCAG+TGG | 0.623640 | 1_4:-11663949 | Msa0150340:intron |
| ATAACGAGCTCAGATTGAGT+TGG | 0.627685 | 1_4:+11664048 | Msa0150350:intron |
| TCATATACTAAACATTGACT+GGG | 0.628210 | 1_4:-11664086 | Msa0150340:intron |
| AGTGCACCATCTGAAAAGCT+GGG | 0.637769 | 1_4:+11663878 | Msa0150350:CDS |
| ACTTGAACAAGATAAACGAA+AGG | 0.637824 | 1_4:-11663643 | Msa0150340:intron |
| ATTGTGAGTGACATGTTGAA+GGG | 0.641062 | 1_4:-11663546 | Msa0150340:intron |
| AACCTAGGAAGACAGTTGTG+TGG | 0.655485 | 1_4:-11663765 | Msa0150340:intron |
| TTGAACAAGATAAACGAAAG+GGG | 0.665988 | 1_4:-11663641 | Msa0150340:intron |
| ACAACATATCTTGTACACCA+GGG | 0.694524 | 1_4:-11663911 | Msa0150340:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATATTATATATACCTT+AGG | + | chr1_4:11664172-11664191 | Msa0150350:intron | 15.0% |
| !! | GAATATATTATATATACCTT+AGG | + | chr1_4:11664172-11664191 | Msa0150350:intron | 15.0% |
| !!! | ATAAGGAATTTTTTTGATAC+AGG | - | chr1_4:11663702-11663721 | Msa0150340:intron | 20.0% |
| !! | TAATTAAATGTTGAATTTGC+AGG | + | chr1_4:11664237-11664256 | Msa0150350:intron | 20.0% |
| !!! | ATAAGGAATTTTTTTGATAC+AGG | - | chr1_4:11663702-11663721 | Msa0150340:intron | 20.0% |
| !! | TAATTAAATGTTGAATTTGC+AGG | + | chr1_4:11664237-11664256 | Msa0150350:intron | 20.0% |
| !!! | TTTTTTGATACAGGTTTTGA+GGG | - | chr1_4:11663693-11663712 | Msa0150340:intron | 25.0% |
| !!! | TTTTTTTGATACAGGTTTTG+AGG | - | chr1_4:11663694-11663713 | Msa0150340:intron | 25.0% |
| !! | TTGTTTGTTAAAAAGAACCT+AGG | - | chr1_4:11663783-11663802 | Msa0150340:intron | 25.0% |
| !!! | TTTTTTAATTGCTCTTCAGT+TGG | + | chr1_4:11663855-11663874 | Msa0150350:intron | 25.0% |
| !! | AATGTTTGATAAAGTTTTGC+CGG | + | chr1_4:11664001-11664020 | Msa0150350:CDS | 25.0% |
| !! | TCATATACTAAACATTGACT+GGG | - | chr1_4:11664089-11664108 | Msa0150340:intron | 25.0% |
| ! | ATCATATACTAAACATTGAC+TGG | - | chr1_4:11664090-11664109 | Msa0150340:intron | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_4:11664143-11664162 | Msa0150350:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_4:11664147-11664166 | Msa0150340:intron | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_4:11664350-11664369 | Msa0150350:CDS | 25.0% |
| !!! | TTTTTTGATACAGGTTTTGA+GGG | - | chr1_4:11663693-11663712 | Msa0150340:intron | 25.0% |
| !!! | TTTTTTTGATACAGGTTTTG+AGG | - | chr1_4:11663694-11663713 | Msa0150340:intron | 25.0% |
| !! | TTGTTTGTTAAAAAGAACCT+AGG | - | chr1_4:11663783-11663802 | Msa0150340:intron | 25.0% |
| !!! | TTTTTTAATTGCTCTTCAGT+TGG | + | chr1_4:11663855-11663874 | Msa0150350:intron | 25.0% |
| !! | AATGTTTGATAAAGTTTTGC+CGG | + | chr1_4:11664001-11664020 | Msa0150350:CDS | 25.0% |
| !! | TCATATACTAAACATTGACT+GGG | - | chr1_4:11664089-11664108 | Msa0150340:intron | 25.0% |
| ! | ATCATATACTAAACATTGAC+TGG | - | chr1_4:11664090-11664109 | Msa0150340:intron | 25.0% |
| !!! | TCCATTATTTTAGTAACAAC+AGG | + | chr1_4:11664143-11664162 | Msa0150350:CDS | 25.0% |
| ! | ACCTGTTGTTACTAAAATAA+TGG | - | chr1_4:11664147-11664166 | Msa0150340:intron | 25.0% |
| !! | GAGACTTGAAAACTTTTTAA+AGG | + | chr1_4:11664350-11664369 | Msa0150350:CDS | 25.0% |
| CTATCAATGAACCTTGTAAA+TGG | + | chr1_4:11663588-11663607 | Msa0150350:CDS | 30.0% | |
| TATTGTTCTGACCATTTACA+AGG | - | chr1_4:11663602-11663621 | Msa0150340:intron | 30.0% | |
| TTGAACAAGATAAACGAAAG+GGG | - | chr1_4:11663644-11663663 | Msa0150340:intron | 30.0% | |
| CTTGAACAAGATAAACGAAA+GGG | - | chr1_4:11663645-11663664 | Msa0150340:intron | 30.0% | |
| ACTTGAACAAGATAAACGAA+AGG | - | chr1_4:11663646-11663665 | Msa0150340:intron | 30.0% | |
| !! | TCTCAGGACATTTTGATATA+AGG | + | chr1_4:11664024-11664043 | Msa0150350:CDS | 30.0% |
| !! | TGAGTTTCTTCTTTGATTTG+TGG | - | chr1_4:11664121-11664140 | Msa0150340:intron | 30.0% |
| TGGAATAGAAATAGAACCTA+AGG | - | chr1_4:11664191-11664210 | Msa0150340:intron | 30.0% | |
| !!! | ACTATGCTGGTTATTTTGAT+TGG | + | chr1_4:11664276-11664295 | Msa0150350:CDS | 30.0% |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_4:11664393-11664412 | Msa0150340:intron | 30.0% | |
| GATCAATTCAAAGAAAAGCT+TGG | + | chr1_4:11664429-11664448 | Msa0150350:CDS | 30.0% | |
| CTATCAATGAACCTTGTAAA+TGG | + | chr1_4:11663588-11663607 | Msa0150350:CDS | 30.0% | |
| TATTGTTCTGACCATTTACA+AGG | - | chr1_4:11663602-11663621 | Msa0150340:intron | 30.0% | |
| TTGAACAAGATAAACGAAAG+GGG | - | chr1_4:11663644-11663663 | Msa0150340:intron | 30.0% | |
| CTTGAACAAGATAAACGAAA+GGG | - | chr1_4:11663645-11663664 | Msa0150340:intron | 30.0% | |
| ACTTGAACAAGATAAACGAA+AGG | - | chr1_4:11663646-11663665 | Msa0150340:intron | 30.0% | |
| !! | TCTCAGGACATTTTGATATA+AGG | + | chr1_4:11664024-11664043 | Msa0150350:CDS | 30.0% |
| !! | TGAGTTTCTTCTTTGATTTG+TGG | - | chr1_4:11664121-11664140 | Msa0150340:intron | 30.0% |
| TGGAATAGAAATAGAACCTA+AGG | - | chr1_4:11664191-11664210 | Msa0150340:intron | 30.0% | |
| !!! | ACTATGCTGGTTATTTTGAT+TGG | + | chr1_4:11664276-11664295 | Msa0150350:CDS | 30.0% |
| TCTGCATAAGAAAATCTAGT+TGG | - | chr1_4:11664393-11664412 | Msa0150340:intron | 30.0% | |
| GATCAATTCAAAGAAAAGCT+TGG | + | chr1_4:11664429-11664448 | Msa0150350:CDS | 30.0% | |
| ATTGTGAGTGACATGTTGAA+GGG | - | chr1_4:11663549-11663568 | Msa0150340:intron | 35.0% | |
| TATTGTGAGTGACATGTTGA+AGG | - | chr1_4:11663550-11663569 | Msa0150340:intron | 35.0% | |
| TGCAATCTATGTCACTGATA+AGG | - | chr1_4:11663719-11663738 | Msa0150340:intron | 35.0% | |
| TTGGAAGAATCTGATTGGAA+AGG | - | chr1_4:11663822-11663841 | Msa0150340:intron | 35.0% | |
| TTCCAATCAGATTCTTCCAA+CGG | + | chr1_4:11663822-11663841 | Msa0150350:intron | 35.0% | |
| AAAAAAAGTAACGTTGCCGT+TGG | - | chr1_4:11663841-11663860 | Msa0150340:intron | 35.0% | |
| ACAACATATCTTGTACACCA+GGG | - | chr1_4:11663914-11663933 | Msa0150340:intron | 35.0% | |
| TAAGGATCAGTGGCATATAT+TGG | - | chr1_4:11663942-11663961 | Msa0150340:intron | 35.0% | |
| ATATCAAAATGTCCTGAGAC+CGG | - | chr1_4:11664023-11664042 | Msa0150340:intron | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_4:11664263-11664282 | Msa0150350:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_4:11664307-11664326 | Msa0150350:CDS | 35.0% |
| ATTGTGAGTGACATGTTGAA+GGG | - | chr1_4:11663549-11663568 | Msa0150340:intron | 35.0% | |
| TATTGTGAGTGACATGTTGA+AGG | - | chr1_4:11663550-11663569 | Msa0150340:intron | 35.0% | |
| TGCAATCTATGTCACTGATA+AGG | - | chr1_4:11663719-11663738 | Msa0150340:intron | 35.0% | |
| TTGGAAGAATCTGATTGGAA+AGG | - | chr1_4:11663822-11663841 | Msa0150340:intron | 35.0% | |
| TTCCAATCAGATTCTTCCAA+CGG | + | chr1_4:11663822-11663841 | Msa0150350:intron | 35.0% | |
| AAAAAAAGTAACGTTGCCGT+TGG | - | chr1_4:11663841-11663860 | Msa0150340:intron | 35.0% | |
| ACAACATATCTTGTACACCA+GGG | - | chr1_4:11663914-11663933 | Msa0150340:intron | 35.0% | |
| TAAGGATCAGTGGCATATAT+TGG | - | chr1_4:11663942-11663961 | Msa0150340:intron | 35.0% | |
| ATATCAAAATGTCCTGAGAC+CGG | - | chr1_4:11664023-11664042 | Msa0150340:intron | 35.0% | |
| !! | AATTGTTGGTTCAACTATGC+TGG | + | chr1_4:11664263-11664282 | Msa0150350:CDS | 35.0% |
| !! | TTCGAGTTTACGTCCATTTT+AGG | + | chr1_4:11664307-11664326 | Msa0150350:CDS | 35.0% |
| !! | TAAACGAAAGGGGCATTCAA+AGG | - | chr1_4:11663634-11663653 | Msa0150340:intron | 40.0% |
| GACAACATATCTTGTACACC+AGG | - | chr1_4:11663915-11663934 | Msa0150340:intron | 40.0% | |
| ATAACGAGCTCAGATTGAGT+TGG | + | chr1_4:11664048-11664067 | Msa0150350:intron | 40.0% | |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_4:11664249-11664268 | Msa0150350:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_4:11664314-11664333 | Msa0150350:CDS | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_4:11664315-11664334 | Msa0150350:CDS | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_4:11664435-11664454 | Msa0150350:CDS | 40.0% | |
| !! | TAAACGAAAGGGGCATTCAA+AGG | - | chr1_4:11663634-11663653 | Msa0150340:intron | 40.0% |
| GACAACATATCTTGTACACC+AGG | - | chr1_4:11663915-11663934 | Msa0150340:intron | 40.0% | |
| ATAACGAGCTCAGATTGAGT+TGG | + | chr1_4:11664048-11664067 | Msa0150350:intron | 40.0% | |
| GAATTTGCAGGAGCAATTGT+TGG | + | chr1_4:11664249-11664268 | Msa0150350:intron | 40.0% | |
| !!! | TTACGTCCATTTTAGGACGA+AGG | + | chr1_4:11664314-11664333 | Msa0150350:CDS | 40.0% |
| !!! | TACGTCCATTTTAGGACGAA+GGG | + | chr1_4:11664315-11664334 | Msa0150350:CDS | 40.0% |
| TTCAAAGAAAAGCTTGGCGA+AGG | + | chr1_4:11664435-11664454 | Msa0150350:CDS | 40.0% | |
| !!! | CAGGTTTTGAGGGAAACTCA+AGG | - | chr1_4:11663683-11663702 | Msa0150340:intron | 45.0% |
| ACCTAGGAAGACAGTTGTGT+GGG | - | chr1_4:11663767-11663786 | Msa0150340:intron | 45.0% | |
| AACCTAGGAAGACAGTTGTG+TGG | - | chr1_4:11663768-11663787 | Msa0150340:intron | 45.0% | |
| TGCCGTTGGAAGAATCTGAT+TGG | - | chr1_4:11663827-11663846 | Msa0150340:intron | 45.0% | |
| AGTGCACCATCTGAAAAGCT+GGG | + | chr1_4:11663878-11663897 | Msa0150350:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_4:11663887-11663906 | Msa0150340:intron | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_4:11663905-11663924 | Msa0150340:intron | 45.0% | |
| AAATCGACGACACTCTCGTA+AGG | - | chr1_4:11663960-11663979 | Msa0150340:intron | 45.0% | |
| !! | TTACGAGAGTGTCGTCGATT+TGG | + | chr1_4:11663959-11663978 | Msa0150350:CDS | 45.0% |
| ! | GATAAAGTTTTGCCGGTCTC+AGG | + | chr1_4:11664008-11664027 | Msa0150350:CDS | 45.0% |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_4:11664316-11664335 | Msa0150350:CDS | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_4:11664459-11664478 | Msa0150350:CDS | 45.0% | |
| !!! | CAGGTTTTGAGGGAAACTCA+AGG | - | chr1_4:11663683-11663702 | Msa0150340:intron | 45.0% |
| ACCTAGGAAGACAGTTGTGT+GGG | - | chr1_4:11663767-11663786 | Msa0150340:intron | 45.0% | |
| AACCTAGGAAGACAGTTGTG+TGG | - | chr1_4:11663768-11663787 | Msa0150340:intron | 45.0% | |
| TGCCGTTGGAAGAATCTGAT+TGG | - | chr1_4:11663827-11663846 | Msa0150340:intron | 45.0% | |
| AGTGCACCATCTGAAAAGCT+GGG | + | chr1_4:11663878-11663897 | Msa0150350:CDS | 45.0% | |
| ! | TTTGGTCCCAGCTTTTCAGA+TGG | - | chr1_4:11663887-11663906 | Msa0150340:intron | 45.0% |
| CTTGTACACCAGGGTTTCTT+TGG | - | chr1_4:11663905-11663924 | Msa0150340:intron | 45.0% | |
| AAATCGACGACACTCTCGTA+AGG | - | chr1_4:11663960-11663979 | Msa0150340:intron | 45.0% | |
| !! | TTACGAGAGTGTCGTCGATT+TGG | + | chr1_4:11663959-11663978 | Msa0150350:CDS | 45.0% |
| ! | GATAAAGTTTTGCCGGTCTC+AGG | + | chr1_4:11664008-11664027 | Msa0150350:CDS | 45.0% |
| !!! | ACGTCCATTTTAGGACGAAG+GGG | + | chr1_4:11664316-11664335 | Msa0150350:CDS | 45.0% |
| GCTCATGGAGCTGTCTATAA+AGG | + | chr1_4:11664459-11664478 | Msa0150350:CDS | 45.0% | |
| !! | ATTTAGAAAATAATAATATA+TGG | - | chr1_4:11664211-11664230 | Msa0150340:intron | 5.0% |
| !! | ATTTAGAAAATAATAATATA+TGG | - | chr1_4:11664211-11664230 | Msa0150340:intron | 5.0% |
| GACAGTTGTGTGGGTCAGAT+AGG | - | chr1_4:11663758-11663777 | Msa0150340:intron | 50.0% | |
| ACCCACACAACTGTCTTCCT+AGG | + | chr1_4:11663763-11663782 | Msa0150350:CDS | 50.0% | |
| GAGTGCACCATCTGAAAAGC+TGG | + | chr1_4:11663877-11663896 | Msa0150350:CDS | 50.0% | |
| GACACTCTCGTAAGGATCAG+TGG | - | chr1_4:11663952-11663971 | Msa0150340:intron | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_4:11664317-11664336 | Msa0150350:CDS | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_4:11664323-11664342 | Msa0150340:intron | 50.0% | |
| GACAGTTGTGTGGGTCAGAT+AGG | - | chr1_4:11663758-11663777 | Msa0150340:intron | 50.0% | |
| ACCCACACAACTGTCTTCCT+AGG | + | chr1_4:11663763-11663782 | Msa0150350:CDS | 50.0% | |
| GAGTGCACCATCTGAAAAGC+TGG | + | chr1_4:11663877-11663896 | Msa0150350:CDS | 50.0% | |
| GACACTCTCGTAAGGATCAG+TGG | - | chr1_4:11663952-11663971 | Msa0150340:intron | 50.0% | |
| !!! | CGTCCATTTTAGGACGAAGG+GGG | + | chr1_4:11664317-11664336 | Msa0150350:CDS | 50.0% |
| CTTCCCCCTTCGTCCTAAAA+TGG | - | chr1_4:11664323-11664342 | Msa0150340:intron | 50.0% | |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_4:11663894-11663913 | Msa0150350:CDS | 55.0% | |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_4:11664444-11664463 | Msa0150350:CDS | 55.0% | |
| AGCTGGGACCAAAGAAACCC+TGG | + | chr1_4:11663894-11663913 | Msa0150350:CDS | 55.0% | |
| AAGCTTGGCGAAGGAGCTCA+TGG | + | chr1_4:11664444-11664463 | Msa0150350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 11663538 | 11664491 | 11663538 | ID=Msa0150350;Name=Msa0150350 |
| chr1_4 | mRNA | 11663538 | 11664491 | 11663538 | ID=Msa0150350-mRNA-1;Parent=Msa0150350;Name=Msa0150350-mRNA-1;_AED=0.16;_eAED=0.17;_QI=17|0.25|0.2|1|0.25|0|5|0|252 |
| chr1_4 | exon | 11663538 | 11663784 | 11663538 | ID=Msa0150350-mRNA-1:exon:4844;Parent=Msa0150350-mRNA-1 |
| chr1_4 | exon | 11663832 | 11663848 | 11663832 | ID=Msa0150350-mRNA-1:exon:4845;Parent=Msa0150350-mRNA-1 |
| chr1_4 | exon | 11663874 | 11664045 | 11663874 | ID=Msa0150350-mRNA-1:exon:4846;Parent=Msa0150350-mRNA-1 |
| chr1_4 | exon | 11664061 | 11664164 | 11664061 | ID=Msa0150350-mRNA-1:exon:4847;Parent=Msa0150350-mRNA-1 |
| chr1_4 | exon | 11664259 | 11664491 | 11664259 | ID=Msa0150350-mRNA-1:exon:4848;Parent=Msa0150350-mRNA-1 |
| chr1_4 | five_prime_UTR | 11663538 | 11663554 | 11663538 | ID=Msa0150350-mRNA-1:five_prime_utr;Parent=Msa0150350-mRNA-1 |
| chr1_4 | CDS | 11663555 | 11663784 | 11663555 | ID=Msa0150350-mRNA-1:cds;Parent=Msa0150350-mRNA-1 |
| chr1_4 | CDS | 11663832 | 11663848 | 11663832 | ID=Msa0150350-mRNA-1:cds;Parent=Msa0150350-mRNA-1 |
| chr1_4 | CDS | 11663874 | 11664045 | 11663874 | ID=Msa0150350-mRNA-1:cds;Parent=Msa0150350-mRNA-1 |
| chr1_4 | CDS | 11664061 | 11664164 | 11664061 | ID=Msa0150350-mRNA-1:cds;Parent=Msa0150350-mRNA-1 |
| chr1_4 | CDS | 11664259 | 11664491 | 11664259 | ID=Msa0150350-mRNA-1:cds;Parent=Msa0150350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
