AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104540 MtrunA17_Chr1g0158781 93.005 386 27 0 1 386 1 386 0.0 690
Msa0104540 MtrunA17_Chr3g0112291 49.691 324 127 9 86 380 60 376 7.35e-91 278
Msa0104540 MtrunA17_Chr5g0396731 54.770 283 117 5 112 383 72 354 6.37e-89 272
Msa0104540 MtrunA17_Chr4g0070871 47.546 326 135 7 92 382 182 506 2.04e-84 266
Msa0104540 MtrunA17_Chr1g0150781 49.051 316 119 8 104 380 232 544 2.45e-82 261
Msa0104540 MtrunA17_Chr3g0135961 47.664 321 123 7 104 381 223 541 2.86e-82 261
Msa0104540 MtrunA17_Chr5g0435721 52.536 276 103 5 113 366 193 462 4.18e-80 254
Msa0104540 MtrunA17_Chr2g0299981 42.234 367 157 9 63 381 178 537 5.14e-79 253
Msa0104540 MtrunA17_Chr8g0389921 46.599 294 128 5 111 380 147 435 5.04e-72 232
Msa0104540 MtrunA17_Chr1g0150451 39.416 274 139 7 107 377 72 321 1.19e-45 160
Msa0104540 MtrunA17_Chr3g0136711 39.259 270 137 7 111 377 33 278 3.83e-45 157
Msa0104540 MtrunA17_Chr1g0212961 39.338 272 130 9 111 377 94 335 1.86e-43 154
Msa0104540 MtrunA17_Chr3g0126511 35.836 293 161 7 88 377 70 338 1.34e-40 147
Msa0104540 MtrunA17_Chr3g0105371 37.079 267 146 7 120 383 95 342 1.39e-38 141
Msa0104540 MtrunA17_Chr3g0105351 36.882 263 146 7 120 380 71 315 1.75e-38 140
Msa0104540 MtrunA17_Chr5g0430481 36.466 266 143 7 120 380 131 375 5.50e-38 140
Msa0104540 MtrunA17_Chr1g0194191 32.033 359 198 12 48 379 10 349 2.82e-35 133
Msa0104540 MtrunA17_Chr4g0065141 32.292 288 151 11 111 377 84 348 1.21e-34 131
Msa0104540 MtrunA17_Chr5g0407161 32.517 286 148 9 111 377 84 343 3.90e-34 130
Msa0104540 MtrunA17_Chr3g0138281 32.990 291 158 9 104 377 73 343 2.23e-33 128
Msa0104540 MtrunA17_Chr4g0050381 35.317 252 124 7 140 381 56 278 3.03e-33 125
Msa0104540 MtrunA17_Chr2g0293811 31.690 284 161 9 114 379 63 331 4.08e-31 121
Msa0104540 MtrunA17_Chr8g0360351 36.293 259 132 8 125 377 48 279 1.24e-30 118
Msa0104540 MtrunA17_Chr3g0136811 30.816 331 158 10 111 386 22 336 2.07e-30 119
Msa0104540 MtrunA17_Chr5g0426141 34.252 254 134 8 134 380 55 282 4.69e-30 117
Msa0104540 MtrunA17_Chr2g0317021 34.483 261 142 7 124 380 98 333 6.37e-30 117
Msa0104540 MtrunA17_Chr1g0150071 29.607 331 162 11 111 386 22 336 2.03e-29 117
Msa0104540 MtrunA17_Chr1g0171571 34.722 288 147 11 109 380 383 645 1.66e-28 117
Msa0104540 MtrunA17_Chr4g0001761 31.231 333 151 12 111 385 22 334 4.29e-28 113
Msa0104540 MtrunA17_Chr4g0051661 33.475 236 131 6 145 377 183 395 6.28e-28 113
Msa0104540 MtrunA17_Chr3g0115851 32.400 250 142 7 135 380 56 282 5.08e-27 108
Msa0104540 MtrunA17_Chr2g0279151 34.050 279 152 11 108 380 29 281 8.01e-27 108
Msa0104540 MtrunA17_Chr3g0144111 34.167 240 110 9 145 377 27 225 1.41e-26 107
Msa0104540 MtrunA17_Chr1g0151781 32.365 241 123 9 126 330 52 288 2.04e-25 105
Msa0104540 MtrunA17_Chr6g0483411 31.321 265 152 10 93 335 29 285 3.59e-25 104
Msa0104540 MtrunA17_Chr3g0127091 29.206 315 161 14 110 382 58 352 5.17e-24 102
Msa0104540 MtrunA17_Chr4g0067711 32.883 222 113 6 145 330 91 312 1.97e-23 100
Msa0104540 MtrunA17_Chr2g0295401 31.364 220 115 7 147 330 94 313 3.78e-23 99.4
Msa0104540 MtrunA17_Chr4g0066371 28.620 297 154 12 123 381 66 342 3.84e-23 100
Msa0104540 MtrunA17_Chr1g0185141 30.216 278 132 10 154 379 171 438 3.72e-22 99.0
Msa0104540 MtrunA17_Chr3g0089721 31.559 263 120 12 121 332 38 291 3.95e-22 96.7
Msa0104540 MtrunA17_Chr3g0089711 31.179 263 121 12 121 332 38 291 1.39e-21 95.1
Msa0104540 MtrunA17_Chr4g0004971 31.381 239 120 9 126 323 61 296 1.71e-21 94.7
Msa0104540 MtrunA17_Chr1g0192421 33.333 222 112 8 145 330 89 310 4.09e-21 93.6
Msa0104540 MtrunA17_Chr1g0211251 27.875 287 169 8 92 340 26 312 9.50e-21 93.2
Msa0104540 MtrunA17_Chr8g0371321 28.986 276 154 8 96 331 28 301 1.26e-20 92.4
Msa0104540 MtrunA17_Chr1g0213351 25.776 322 167 9 115 379 48 354 2.02e-20 92.0
Msa0104540 MtrunA17_Chr1g0181901 27.953 254 145 6 115 330 44 297 6.21e-20 90.9
Msa0104540 MtrunA17_Chr2g0324061 30.435 253 125 8 126 330 74 323 8.97e-20 90.9
Msa0104540 MtrunA17_Chr1g0207571 28.826 281 150 9 145 379 61 337 1.35e-19 89.4
Msa0104540 MtrunA17_Chr7g0263281 25.714 315 184 7 115 383 39 349 1.39e-19 89.4
Msa0104540 MtrunA17_Chr7g0250061 30.342 234 123 6 145 340 76 307 2.37e-19 89.0
Msa0104540 MtrunA17_Chr7g0243571 30.709 254 123 10 126 330 75 324 6.00e-19 88.2
Msa0104540 MtrunA17_Chr7g0256751 29.297 256 134 9 115 331 44 291 3.11e-18 85.9
Msa0104540 MtrunA17_Chr2g0294291 26.042 288 149 10 115 354 51 322 5.97e-18 84.7
Msa0104540 MtrunA17_Chr7g0221691 30.556 288 137 14 104 330 84 369 7.97e-18 84.7
Msa0104540 MtrunA17_Chr3g0133801 29.555 247 143 8 146 379 67 295 8.79e-18 84.7
Msa0104540 MtrunA17_Chr1g0153671 27.356 329 187 11 67 379 2 294 1.72e-17 83.6
Msa0104540 MtrunA17_Chr7g0272061 30.736 231 115 9 145 330 91 321 2.40e-17 82.8
Msa0104540 MtrunA17_Chr2g0286951 27.907 301 159 11 123 385 67 347 4.36e-17 82.4
Msa0104540 MtrunA17_Chr7g0249421 32.990 194 111 5 155 330 152 344 8.43e-17 82.0
Msa0104540 MtrunA17_Chr4g0022171 29.134 254 128 8 126 330 80 330 1.35e-16 81.3
Msa0104540 MtrunA17_Chr1g0209451 29.600 250 139 10 146 379 69 297 1.95e-16 80.5
Msa0104540 MtrunA17_Chr1g0192471 30.466 279 154 11 120 379 40 297 4.51e-16 79.3
Msa0104540 MtrunA17_Chr1g0175381 27.063 303 179 11 88 354 28 324 6.82e-16 78.6
Msa0104540 MtrunA17_Chr7g0271971 29.242 277 160 10 120 379 40 297 3.64e-15 76.6
Msa0104540 MtrunA17_Chr8g0342431 29.044 272 120 10 126 330 69 334 3.81e-15 76.6
Msa0104540 MtrunA17_Chr7g0256771 28.682 258 133 9 115 331 45 292 4.10e-15 75.5
Msa0104540 MtrunA17_Chr7g0238501 23.958 288 170 9 145 383 263 550 8.56e-15 75.9
Msa0104540 MtrunA17_Chr3g0089691 34.810 158 68 6 208 332 50 205 2.13e-14 73.2
Msa0104540 MtrunA17_Chr7g0225501 29.644 253 139 11 146 379 87 319 3.17e-14 73.9
Msa0104540 MtrunA17_Chr4g0063111 28.514 249 141 8 113 330 48 290 1.59e-13 72.0
Msa0104540 MtrunA17_Chr5g0394181 25.887 282 164 9 120 379 339 597 5.86e-13 70.5
Msa0104540 MtrunA17_Chr4g0063051 27.559 254 139 11 100 332 26 255 4.50e-12 66.6
Msa0104540 MtrunA17_Chr4g0068971 34.307 137 69 5 249 379 110 231 2.39e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104540 AT2G29380.1 48.649 333 141 8 66 380 41 361 2.19e-90 276
Msa0104540 AT1G07430.1 47.975 321 114 6 109 380 118 434 1.02e-87 272
Msa0104540 AT3G11410.1 54.878 246 85 3 114 336 106 348 3.07e-84 262
Msa0104540 AT5G59220.1 55.738 244 85 4 113 338 112 350 4.03e-82 257
Msa0104540 AT4G26080.1 48.525 305 127 7 104 380 121 423 2.35e-81 256
Msa0104540 AT1G72770.4 47.112 329 116 9 104 381 182 503 1.75e-80 256
Msa0104540 AT1G72770.1 47.112 329 116 9 104 381 182 503 1.75e-80 256
Msa0104540 AT1G72770.3 47.112 329 116 9 104 381 182 503 1.75e-80 256
Msa0104540 AT5G57050.2 44.928 345 151 7 76 381 29 373 6.12e-79 248
Msa0104540 AT1G17550.1 46.319 326 124 9 104 381 181 503 1.19e-78 251
Msa0104540 AT1G17550.2 46.319 326 124 9 104 381 181 503 1.19e-78 251
Msa0104540 AT5G57050.1 44.928 345 151 7 76 381 69 413 1.30e-78 248
Msa0104540 AT5G51760.2 42.249 329 148 9 94 382 58 384 2.58e-68 221
Msa0104540 AT5G51760.1 41.641 329 150 9 94 382 88 414 6.42e-68 220
Msa0104540 AT5G59220.2 52.632 190 67 4 113 284 112 296 2.83e-51 174
Msa0104540 AT1G72770.2 48.869 221 72 7 104 284 182 401 3.47e-50 174
Msa0104540 AT1G72770.5 48.869 221 72 7 104 284 182 401 3.47e-50 174
Msa0104540 AT5G57050.3 48.792 207 82 6 104 288 105 309 8.04e-49 167
Msa0104540 AT5G10740.1 39.781 274 138 9 107 377 28 277 2.66e-45 159
Msa0104540 AT5G10740.2 39.781 274 138 9 107 377 28 277 2.66e-45 159
Msa0104540 AT1G43900.1 38.519 270 138 7 111 377 122 366 7.27e-45 159
Msa0104540 AT4G31750.2 37.458 299 155 8 82 377 8 277 2.00e-44 156
Msa0104540 AT5G24940.1 39.051 274 140 7 107 377 28 277 2.44e-44 159
Msa0104540 AT4G31750.1 37.458 299 155 8 82 377 8 277 3.09e-44 155
Msa0104540 AT4G31750.3 37.458 299 155 8 82 377 8 277 3.09e-44 155
Msa0104540 AT1G67820.2 44.037 218 115 4 114 330 86 297 1.64e-42 154
Msa0104540 AT1G67820.1 44.037 218 115 4 114 330 122 333 3.29e-42 154
Msa0104540 AT1G07160.1 38.314 261 146 7 120 379 130 376 8.13e-41 148
Msa0104540 AT2G30020.1 38.931 262 144 6 120 380 147 393 1.09e-40 148
Msa0104540 AT2G40180.1 38.202 267 149 6 120 383 136 389 1.46e-40 148
Msa0104540 AT5G53140.1 36.727 275 143 8 111 380 100 348 9.06e-40 146
Msa0104540 AT5G53140.2 36.727 275 143 8 111 380 100 348 9.06e-40 146
Msa0104540 AT3G51470.2 33.808 281 152 10 108 377 24 281 3.06e-36 134
Msa0104540 AT3G51470.1 34.182 275 147 10 114 377 74 325 5.65e-36 135
Msa0104540 AT2G33700.1 34.767 279 145 11 114 377 86 342 3.83e-35 133
Msa0104540 AT3G62260.2 31.790 324 184 10 73 377 42 347 3.87e-35 133
Msa0104540 AT3G62260.1 33.569 283 154 9 114 377 79 346 4.91e-35 133
Msa0104540 AT3G62260.3 35.366 246 131 8 145 377 27 257 2.05e-34 129
Msa0104540 AT2G25620.1 33.564 289 148 9 114 380 91 357 7.68e-33 127
Msa0104540 AT2G25620.2 33.564 289 148 9 114 380 91 357 7.68e-33 127
Msa0104540 AT1G78200.5 33.992 253 137 6 135 380 9 238 2.27e-31 119
Msa0104540 AT1G78200.4 33.992 253 137 6 135 380 9 238 2.27e-31 119
Msa0104540 AT3G15260.2 33.228 316 172 10 70 380 8 289 4.65e-31 120
Msa0104540 AT3G15260.1 33.228 316 172 10 70 380 8 289 4.65e-31 120
Msa0104540 AT1G78200.1 33.992 253 137 6 135 380 54 283 6.03e-31 119
Msa0104540 AT1G78200.3 33.992 253 137 6 135 380 54 283 6.03e-31 119
Msa0104540 AT1G78200.2 33.992 253 137 6 135 380 54 283 6.03e-31 119
Msa0104540 AT1G48040.1 35.336 283 149 10 114 377 80 347 1.33e-30 120
Msa0104540 AT1G34750.2 34.263 251 136 7 135 380 56 282 3.81e-30 117
Msa0104540 AT1G34750.1 34.263 251 136 7 135 380 56 282 3.81e-30 117
Msa0104540 AT1G34750.3 34.263 251 136 7 135 380 56 282 3.81e-30 117
Msa0104540 AT2G34740.1 32.819 259 145 9 125 379 101 334 3.04e-29 116
Msa0104540 AT2G25070.1 29.846 325 157 11 111 380 22 330 6.02e-29 115
Msa0104540 AT2G25070.2 29.846 325 157 11 111 380 22 330 6.02e-29 115
Msa0104540 AT1G22280.3 34.568 243 132 8 145 380 65 287 9.69e-29 114
Msa0104540 AT4G31860.3 32.959 267 119 7 111 324 22 281 1.02e-28 114
Msa0104540 AT2G40860.1 34.843 287 142 11 111 380 391 649 1.23e-28 118
Msa0104540 AT2G40860.4 34.495 287 143 11 111 380 293 551 1.26e-28 117
Msa0104540 AT4G31860.1 32.959 267 119 7 111 324 22 281 2.92e-28 114
Msa0104540 AT3G17250.1 29.282 362 193 12 51 377 58 391 1.54e-27 113
Msa0104540 AT4G31860.2 32.950 261 115 7 111 318 22 275 3.15e-27 109
Msa0104540 AT1G22280.1 33.745 243 128 8 145 380 65 281 3.52e-27 109
Msa0104540 AT4G27800.1 28.662 314 158 10 110 379 57 348 1.51e-26 109
Msa0104540 AT4G28400.3 31.154 260 150 7 125 380 27 261 1.92e-26 107
Msa0104540 AT5G26010.1 33.824 272 145 11 85 324 9 277 2.17e-26 108
Msa0104540 AT4G28400.1 31.154 260 150 7 125 380 49 283 5.50e-26 106
Msa0104540 AT2G40860.2 34.298 242 129 8 111 335 391 619 8.71e-26 109
Msa0104540 AT4G32950.1 32.509 283 155 11 97 357 26 294 9.70e-26 106
Msa0104540 AT1G34750.4 36.649 191 108 6 135 320 56 238 3.00e-25 103
Msa0104540 AT2G20630.1 31.907 257 146 7 125 377 45 276 6.16e-25 103
Msa0104540 AT4G11040.1 30.576 278 127 9 113 385 79 295 9.92e-25 103
Msa0104540 AT2G20630.2 31.641 256 146 7 125 376 45 275 2.46e-24 102
Msa0104540 AT3G51370.1 30.314 287 158 7 94 340 26 310 4.69e-24 102
Msa0104540 AT3G51370.3 30.314 287 158 7 94 340 26 310 4.69e-24 102
Msa0104540 AT5G66080.1 29.552 335 189 10 96 385 30 362 5.24e-24 102
Msa0104540 AT3G16800.2 33.333 222 116 9 141 331 89 309 6.39e-24 102
Msa0104540 AT3G16800.1 33.333 222 116 9 141 331 89 309 6.39e-24 102
Msa0104540 AT3G16800.3 33.333 222 116 9 141 331 89 309 6.39e-24 102
Msa0104540 AT4G08260.1 32.812 256 125 9 125 380 1 209 2.63e-23 97.1
Msa0104540 AT5G02760.1 28.996 269 141 9 115 340 40 301 3.02e-23 100
Msa0104540 AT4G33920.1 28.994 338 173 12 95 379 15 338 4.68e-23 99.8
Msa0104540 AT3G16800.4 33.023 215 112 9 148 331 1 214 8.07e-23 97.1
Msa0104540 AT3G16800.6 33.023 215 112 9 148 331 1 214 8.07e-23 97.1
Msa0104540 AT4G28400.2 34.000 200 119 6 125 320 49 239 1.03e-22 96.7
Msa0104540 AT4G27800.3 28.881 277 145 9 110 342 57 325 1.21e-22 97.8
Msa0104540 AT1G18030.1 31.667 240 134 9 120 335 82 315 1.24e-22 98.2
Msa0104540 AT4G27800.2 28.881 277 145 9 110 342 57 325 1.51e-22 97.8
Msa0104540 AT3G55050.1 25.429 350 211 9 79 382 16 361 1.77e-22 98.2
Msa0104540 AT3G55050.2 25.429 350 211 9 79 382 16 361 1.77e-22 98.2
Msa0104540 AT2G34740.3 32.353 204 125 7 125 324 97 291 1.01e-21 94.7
Msa0104540 AT2G34740.2 32.353 204 125 7 125 324 115 309 1.04e-21 95.1
Msa0104540 AT4G32950.2 32.510 243 137 10 97 317 26 263 1.51e-21 94.0
Msa0104540 AT3G12620.2 28.413 271 142 9 115 340 51 314 3.67e-21 94.4
Msa0104540 AT3G12620.1 28.413 271 142 9 115 340 51 314 3.67e-21 94.4
Msa0104540 AT2G20050.2 31.873 251 118 11 123 332 123 361 3.85e-21 96.3
Msa0104540 AT2G20050.1 31.873 251 118 11 123 332 123 361 3.89e-21 96.3
Msa0104540 AT1G18030.2 32.000 225 123 9 120 320 82 300 6.31e-21 92.4
Msa0104540 AT4G38520.2 28.223 287 150 8 92 331 26 303 4.28e-20 91.7
Msa0104540 AT4G38520.1 28.223 287 150 8 92 331 26 303 4.28e-20 91.7
Msa0104540 AT1G03590.1 30.556 252 125 8 126 330 74 322 4.57e-20 92.0
Msa0104540 AT5G27930.1 33.632 223 111 7 145 330 92 314 6.22e-20 90.9
Msa0104540 AT5G27930.2 33.632 223 111 7 145 330 92 314 6.22e-20 90.9
Msa0104540 AT3G17090.1 27.974 311 178 11 115 385 60 364 7.01e-20 90.9
Msa0104540 AT5G01700.1 31.405 242 130 9 126 333 12 251 2.35e-19 88.6
Msa0104540 AT1G47380.1 29.595 321 178 12 73 379 7 293 2.78e-19 89.4
Msa0104540 AT5G01700.2 31.405 242 130 9 126 333 61 300 6.51e-19 87.8
Msa0104540 AT3G17090.2 28.740 254 139 8 115 332 60 307 6.55e-19 87.0
Msa0104540 AT2G40860.3 33.028 218 116 8 111 311 391 595 2.20e-18 87.4
Msa0104540 AT1G09160.2 30.657 274 154 10 123 379 43 297 4.87e-18 85.9
Msa0104540 AT1G09160.1 30.657 274 154 10 123 379 43 297 4.87e-18 85.9
Msa0104540 AT3G63320.2 29.752 242 108 8 195 383 69 301 5.96e-18 85.1
Msa0104540 AT5G66080.2 31.667 240 124 8 184 385 21 258 6.70e-18 83.6
Msa0104540 AT4G03415.1 30.588 255 124 8 126 330 81 332 8.96e-18 85.1
Msa0104540 AT4G03415.3 30.588 255 124 8 126 330 81 332 8.96e-18 85.1
Msa0104540 AT4G03415.2 30.588 255 124 8 126 330 81 332 8.96e-18 85.1
Msa0104540 AT5G06750.3 28.727 275 138 9 115 343 58 320 1.03e-17 84.3
Msa0104540 AT5G06750.1 28.727 275 138 9 115 343 58 320 1.03e-17 84.3
Msa0104540 AT3G02750.2 37.580 157 80 5 192 330 197 353 1.55e-17 84.7
Msa0104540 AT3G02750.1 37.580 157 80 5 192 330 197 353 1.55e-17 84.7
Msa0104540 AT1G68410.4 30.545 275 147 13 126 379 51 302 2.31e-17 83.6
Msa0104540 AT1G68410.3 30.545 275 147 13 126 379 51 302 2.31e-17 83.6
Msa0104540 AT1G68410.1 30.545 275 147 13 126 379 51 302 2.31e-17 83.6
Msa0104540 AT1G68410.2 30.545 275 147 13 126 379 51 302 2.31e-17 83.6
Msa0104540 AT3G63320.1 31.224 237 111 8 195 383 152 384 2.45e-17 83.6
Msa0104540 AT4G33920.2 32.773 238 104 10 189 379 27 255 3.32e-17 81.6
Msa0104540 AT3G63340.8 31.222 221 102 6 209 383 233 449 5.07e-17 83.6
Msa0104540 AT3G63340.6 31.222 221 102 6 209 383 233 449 5.49e-17 83.6
Msa0104540 AT3G63340.3 31.222 221 102 6 209 383 233 449 5.49e-17 83.6
Msa0104540 AT3G63340.10 31.222 221 102 6 209 383 233 449 5.49e-17 83.6
Msa0104540 AT3G63340.4 31.222 221 102 6 209 383 233 449 5.49e-17 83.6
Msa0104540 AT3G63340.11 31.222 221 102 6 209 383 233 449 5.54e-17 83.6
Msa0104540 AT3G63340.5 31.222 221 102 6 209 383 233 449 5.61e-17 83.6
Msa0104540 AT3G63340.1 31.222 221 102 6 209 383 233 449 5.61e-17 83.6
Msa0104540 AT3G63340.12 31.222 221 102 6 209 383 233 449 5.63e-17 82.8
Msa0104540 AT3G63340.7 31.222 221 102 6 209 383 233 449 5.66e-17 83.6
Msa0104540 AT4G33920.3 32.609 230 100 9 197 379 4 225 1.38e-16 79.3
Msa0104540 AT1G79630.6 37.681 138 70 3 209 330 112 249 3.85e-16 79.7
Msa0104540 AT1G79630.3 37.681 138 70 3 209 330 112 249 3.85e-16 79.7
Msa0104540 AT1G79630.4 37.681 138 70 3 209 330 112 249 3.85e-16 79.7
Msa0104540 AT1G79630.5 37.681 138 70 3 209 330 112 249 3.85e-16 79.7
Msa0104540 AT1G79630.2 37.681 138 70 3 209 330 152 289 4.35e-16 79.7
Msa0104540 AT1G79630.7 37.681 138 70 3 209 330 152 289 4.35e-16 79.7
Msa0104540 AT5G36250.1 27.451 306 142 11 104 332 44 346 4.76e-16 79.7
Msa0104540 AT1G79630.1 37.681 138 70 3 209 330 222 359 5.01e-16 80.1
Msa0104540 AT1G79630.8 37.681 138 70 3 209 330 218 355 5.24e-16 80.1
Msa0104540 AT3G51370.2 32.984 191 92 5 184 340 37 225 9.27e-16 77.4
Msa0104540 AT3G05640.2 39.130 138 68 4 209 330 172 309 9.88e-16 78.2
Msa0104540 AT3G05640.1 39.130 138 68 4 209 330 172 309 9.88e-16 78.2
Msa0104540 AT3G05640.3 39.130 138 68 4 209 330 172 309 9.88e-16 78.2
Msa0104540 AT5G19280.1 29.433 282 163 11 120 383 318 581 1.01e-15 79.3
Msa0104540 AT3G63340.2 37.415 147 85 4 240 383 340 482 1.26e-15 79.3
Msa0104540 AT1G16220.1 30.556 180 107 4 169 330 157 336 2.51e-15 77.8
Msa0104540 AT2G05050.1 28.516 256 117 9 125 380 1 190 5.98e-14 70.5
Msa0104540 AT5G19280.2 28.425 292 163 12 120 383 318 591 2.56e-13 72.0
Msa0104540 AT5G06750.2 30.890 191 96 5 189 343 48 238 3.51e-13 70.1
Msa0104540 AT1G22280.2 33.548 155 86 8 125 274 47 189 1.70e-11 63.5
Msa0104540 AT4G11040.2 36.691 139 68 6 113 247 79 201 7.04e-11 62.0

Find 107 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTCACAGTGACTTC+AGG 0.244276 1_3:-12481300 None:intergenic
AATGCTTCAAAGGTCAAATT+AGG 0.290408 1_3:+12481409 Msa0104540:CDS
CTCAGGTGGCGGAGGCGTGT+AGG 0.323775 1_3:+12478731 Msa0104540:CDS
ATCAACTCATCAGGCCTGTT+TGG 0.331017 1_3:-12479765 None:intergenic
CTTGCAACCTCACGATCTAT+AGG 0.347379 1_3:+12479849 Msa0104540:CDS
TAGATCTTAATGTTCCTCTT+AGG 0.358874 1_3:-12481548 None:intergenic
GTGGAGAAGTACGGGAATGA+TGG 0.370500 1_3:+12478784 Msa0104540:CDS
ACCGGAGAAGGTTGAAAATT+CGG 0.382435 1_3:+12478289 Msa0104540:CDS
GGGAAGAGGTGGTGAAGCTT+TGG 0.383271 1_3:+12478969 Msa0104540:CDS
TATGAGAAATTCATCATCAT+TGG 0.394383 1_3:-12481325 None:intergenic
AGAGTGATGGAAGGGTGTTT+TGG 0.394683 1_3:+12478823 Msa0104540:CDS
TGGAATGGCCACCGTGTTCT+TGG 0.396208 1_3:+12479822 Msa0104540:CDS
CTGGTGGAAGAGTTATAAAC+TGG 0.397688 1_3:+12479802 Msa0104540:CDS
GGATTTGTCAAGTGATCATA+AGG 0.404582 1_3:+12478990 Msa0104540:CDS
GCAAAGATCCACGTCGGAAA+TGG 0.405131 1_3:+12478333 Msa0104540:CDS
TTGTTTGTCCACAGCCAAAC+AGG 0.412814 1_3:+12479751 Msa0104540:intron
TGGAGAAGTACGGGAATGAT+GGG 0.414139 1_3:+12478785 Msa0104540:CDS
AATGTTAACCTGTGCTCTTA+AGG 0.422571 1_3:+12481605 Msa0104540:three_prime_UTR
TCTATTCTCATCAACTCATC+AGG 0.424557 1_3:-12479774 None:intergenic
AGCTTCGTAACTGCTCCAAC+TGG 0.445505 1_3:-12478255 None:intergenic
TAGGATTGTGGCGGAGGAGG+TGG 0.460409 1_3:+12478765 Msa0104540:CDS
TCATGGTGGTGCTCAGGTGG+CGG 0.466235 1_3:+12478720 Msa0104540:CDS
GCGGAGGAGGTGGAGAAGTA+CGG 0.468719 1_3:+12478775 Msa0104540:CDS
TGGCGGGTGATGCCGCGGTT+AGG 0.472797 1_3:+12478863 Msa0104540:CDS
TCAGGTGGCGGAGGCGTGTA+GGG 0.473874 1_3:+12478732 Msa0104540:CDS
TGGTGATTCTAGAGCCGTCT+TGG 0.475428 1_3:+12478948 Msa0104540:CDS
GATGCCGCGGTTAGGACCGT+GGG 0.477926 1_3:+12478871 Msa0104540:CDS
GATAGGGTGTAGGAAGGAAA+TGG 0.481470 1_3:+12478621 Msa0104540:CDS
TTCGGTGTTTATGACGGTCA+TGG 0.483965 1_3:+12478703 Msa0104540:CDS
CGGAGGAGGTGGAGAAGTAC+GGG 0.488475 1_3:+12478776 Msa0104540:CDS
ACTAGCAAGTGATGGCTTGT+GGG 0.496581 1_3:+12481347 Msa0104540:CDS
CATGGTTCGGTGTCAACGAT+AGG 0.497255 1_3:+12478604 Msa0104540:CDS
TACTAGCAAGTGATGGCTTG+TGG 0.499391 1_3:+12481346 Msa0104540:CDS
AGTTGGAGCAGTTACGAAGC+TGG 0.499394 1_3:+12478257 Msa0104540:CDS
GTCATAGTTGTTGACCTAAG+AGG 0.501868 1_3:+12481534 Msa0104540:CDS
TGGTGGTGCTCAGGTGGCGG+AGG 0.505538 1_3:+12478723 Msa0104540:CDS
ATTTGAGTGGGAGAGAGTGA+TGG 0.507256 1_3:+12478810 Msa0104540:CDS
GACACCGAACCATGCGATAG+AGG 0.509597 1_3:-12478595 None:intergenic
ACATAGGATTGTGGCGGAGG+AGG 0.510112 1_3:+12478762 Msa0104540:CDS
CGACGAGTGGATTCTCCAGT+TGG 0.517041 1_3:+12478240 Msa0104540:CDS
TAAAATGGATAGAGAGGTGG+CGG 0.517560 1_3:+12478846 Msa0104540:CDS
TCTAGAGCCGTCTTGGGAAG+AGG 0.518511 1_3:+12478955 Msa0104540:CDS
GTTGTAAGAAAATGCTTCAA+AGG 0.519484 1_3:+12481399 Msa0104540:CDS
GGTGATTCTAGAGCCGTCTT+GGG 0.523572 1_3:+12478949 Msa0104540:CDS
ATTACATAGGATTGTGGCGG+AGG 0.524499 1_3:+12478759 Msa0104540:CDS
TGACGGTCATGGTGGTGCTC+AGG 0.528135 1_3:+12478714 Msa0104540:CDS
AATGGAGGATGCAGTGAGTG+TGG 0.528815 1_3:+12478639 Msa0104540:CDS
TGGAGAATATTCACCGGAGA+AGG 0.534160 1_3:+12478277 Msa0104540:CDS
CGGTCATGGTGGTGCTCAGG+TGG 0.536858 1_3:+12478717 Msa0104540:CDS
TGATGCCGCGGTTAGGACCG+TGG 0.537553 1_3:+12478870 Msa0104540:CDS
TCGACGAGAGATTCATGAAT+CGG 0.538929 1_3:+12478389 Msa0104540:CDS
GTTAGCAACTTCTTCATCAT+CGG 0.543064 1_3:+12478428 Msa0104540:CDS
GGAATCTTCTCTCCGACGAG+TGG 0.547552 1_3:+12478227 Msa0104540:CDS
ATGGTTCGGTGTCAACGATA+GGG 0.549454 1_3:+12478605 Msa0104540:CDS
AAACATGAAACGACACTCAT+CGG 0.550810 1_3:+12478206 Msa0104540:CDS
AGTTGTGGCGGTTGTTGTGA+AGG 0.552513 1_3:+12478903 Msa0104540:CDS
ACGACCTCTATCGCATGGTT+CGG 0.552860 1_3:+12478591 Msa0104540:CDS
CGTGGGGTCTACCGCAGTTG+TGG 0.554747 1_3:+12478888 Msa0104540:CDS
GTCTGAGATAGCATTGGCAA+AGG 0.555565 1_3:+12481491 Msa0104540:CDS
CGACGACGGTAGTTTAGAAA+CGG 0.565353 1_3:+12478359 Msa0104540:CDS
GTCGGAAATGGCTCCGACGA+CGG 0.566809 1_3:+12478345 Msa0104540:CDS
AAATTAGGAGAGTTTGTCGT+GGG 0.567260 1_3:+12481424 Msa0104540:CDS
GATCAGTCGTCCAAGCAAAA+CGG 0.569687 1_3:+12478459 Msa0104540:CDS
TCTGAGATAGCATTGGCAAA+GGG 0.577103 1_3:+12481492 Msa0104540:CDS
GGAAGAGTTATAAACTGGAA+TGG 0.578243 1_3:+12479807 Msa0104540:CDS
CGGTGTCAACGATAGGGTGT+AGG 0.578460 1_3:+12478611 Msa0104540:CDS
TTGATGAGAATAGAAGAAGC+TGG 0.583873 1_3:+12479783 Msa0104540:CDS
GGAATGATGGGGAATTTGAG+TGG 0.585765 1_3:+12478797 Msa0104540:CDS
AGAGGTGGCGGGTGATGCCG+CGG 0.588922 1_3:+12478858 Msa0104540:CDS
TTTCTCATACTAGCAAGTGA+TGG 0.589407 1_3:+12481339 Msa0104540:CDS
ATGCACCACCTTAAGAGCAC+AGG 0.589864 1_3:-12481613 None:intergenic
GGGGTCTACCGCAGTTGTGG+CGG 0.591989 1_3:+12478891 Msa0104540:CDS
GAGTGGGAGAGAGTGATGGA+AGG 0.592483 1_3:+12478814 Msa0104540:CDS
AGGGTGTAGGAAGGAAATGG+AGG 0.598498 1_3:+12478624 Msa0104540:CDS
AGCAACTTCTTCATCATCGG+AGG 0.598936 1_3:+12478431 Msa0104540:CDS
CACAACTGCGGTAGACCCCA+CGG 0.599441 1_3:-12478887 None:intergenic
ACTATTGTCTGAGATAGCAT+TGG 0.602546 1_3:+12481485 Msa0104540:CDS
TGGTAAAATGGATAGAGAGG+TGG 0.611264 1_3:+12478843 Msa0104540:CDS
GAATGATGGGGAATTTGAGT+GGG 0.611631 1_3:+12478798 Msa0104540:CDS
GGAGAAGTACGGGAATGATG+GGG 0.612981 1_3:+12478786 Msa0104540:CDS
CGTCGGAGCCATTTCCGACG+TGG 0.626743 1_3:-12478341 None:intergenic
GGAGAGATTACATAGGATTG+TGG 0.628007 1_3:+12478753 Msa0104540:CDS
CGTTTCTAAACTACCGTCGT+CGG 0.628182 1_3:-12478358 None:intergenic
ATGAGAATAGAAGAAGCTGG+TGG 0.630044 1_3:+12479786 Msa0104540:CDS
CGAAGCTGGAGAATATTCAC+CGG 0.630349 1_3:+12478271 Msa0104540:CDS
CTAGCAAGTGATGGCTTGTG+GGG 0.633102 1_3:+12481348 Msa0104540:CDS
AGTGGGAGAGAGTGATGGAA+GGG 0.635076 1_3:+12478815 Msa0104540:CDS
CAACAACGACCTCTATCGCA+TGG 0.636873 1_3:+12478586 Msa0104540:CDS
GTCAACGATAGGGTGTAGGA+AGG 0.646408 1_3:+12478615 Msa0104540:CDS
TAACCAACCTATAGATCGTG+AGG 0.647099 1_3:-12479856 None:intergenic
TGTGGCGGTTGTTGTGAAGG+AGG 0.647114 1_3:+12478906 Msa0104540:CDS
TTCACCACCTCTTCCCAAGA+CGG 0.652418 1_3:-12478962 None:intergenic
CAACTGGAGAATCCACTCGT+CGG 0.654460 1_3:-12478239 None:intergenic
GTCGTCCAAGCAAAACGGAG+AGG 0.660006 1_3:+12478464 Msa0104540:CDS
TTGCAAGAACACCAAGAACA+CGG 0.661960 1_3:-12479833 None:intergenic
CGTGTAGGGAGAGATTACAT+AGG 0.663499 1_3:+12478746 Msa0104540:CDS
CAAATTAGGAGAGTTTGTCG+TGG 0.666129 1_3:+12481423 Msa0104540:CDS
GAGATTACATAGGATTGTGG+CGG 0.666518 1_3:+12478756 Msa0104540:CDS
CACAACAACCGCCACAACTG+CGG 0.666762 1_3:-12478899 None:intergenic
AGAGCCGTCTTGGGAAGAGG+TGG 0.668426 1_3:+12478958 Msa0104540:CDS
AAAATGGATAGAGAGGTGGC+GGG 0.676392 1_3:+12478847 Msa0104540:CDS
GCGATCGTTGTTGCAAACTG+TGG 0.686693 1_3:+12478928 Msa0104540:CDS
AGACCCCACGGTCCTAACCG+CGG 0.692037 1_3:-12478875 None:intergenic
GGTGTTTATGACGGTCATGG+TGG 0.724654 1_3:+12478706 Msa0104540:CDS
ATGCCGCGGTTAGGACCGTG+GGG 0.731612 1_3:+12478872 Msa0104540:CDS
TGTCAAGCAAAGATCCACGT+CGG 0.732864 1_3:+12478327 Msa0104540:CDS
CAAGAACACCAAGAACACGG+TGG 0.824774 1_3:-12479830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATATATAAAGAAAAA+TGG + chr1_3:12479150-12479169 Msa0104540:intron 10.0%
!! TATAGTTATAAATTACAATT+AGG - chr1_3:12479305-12479324 None:intergenic 10.0%
!! AAACAATTATTATTAAGAAT+AGG - chr1_3:12480347-12480366 None:intergenic 10.0%
!!! TATTATTAGCTTATTATACA+CGG + chr1_3:12478492-12478511 Msa0104540:intron 15.0%
!!! AATATCTATAATTGTTTTTG+AGG + chr1_3:12479216-12479235 Msa0104540:intron 15.0%
!!! ATATCTATAATTGTTTTTGA+GGG + chr1_3:12479217-12479236 Msa0104540:intron 15.0%
!! TTAAATTCATTGAAGATTAT+TGG + chr1_3:12480288-12480307 Msa0104540:intron 15.0%
!! TCGATTTAATTAGTTATTTA+TGG - chr1_3:12481107-12481126 None:intergenic 15.0%
!!! TTTCATCTTTTATTATTTGC+AGG + chr1_3:12478546-12478565 Msa0104540:intron 20.0%
!!! ATTCCATAGTACTAATTTTT+AGG + chr1_3:12479044-12479063 Msa0104540:intron 20.0%
!!! TATCTATAATTGTTTTTGAG+GGG + chr1_3:12479218-12479237 Msa0104540:intron 20.0%
!! GAAAAATGATAGAAAATTTC+AGG - chr1_3:12479356-12479375 None:intergenic 20.0%
!!! CCAAAGTTTTAAATAAATAC+TGG - chr1_3:12479463-12479482 None:intergenic 20.0%
!!! CCAGTATTTATTTAAAACTT+TGG + chr1_3:12479460-12479479 Msa0104540:intron 20.0%
!!! TATCATACAATAGTTTTCTT+TGG - chr1_3:12479706-12479725 None:intergenic 20.0%
!!! TAATTAATCAATGGATTTGT+TGG + chr1_3:12479947-12479966 Msa0104540:intron 20.0%
!!! TGGTTAATCAATTTTTTTTG+AGG + chr1_3:12479967-12479986 Msa0104540:intron 20.0%
!!! GGTTAATCAATTTTTTTTGA+GGG + chr1_3:12479968-12479987 Msa0104540:intron 20.0%
!!! AAAAGTTAGAACATTTTGTA+AGG - chr1_3:12480818-12480837 None:intergenic 20.0%
! GTACCTAAAAATTAGTACTA+TGG - chr1_3:12479050-12479069 None:intergenic 25.0%
!! AAGAAAAATGGAAGTAGTTT+TGG + chr1_3:12479162-12479181 Msa0104540:intron 25.0%
! TGATCAACACATGATTAATA+AGG - chr1_3:12479503-12479522 None:intergenic 25.0%
!! ATGTGTTGATCAGTATTATT+TGG + chr1_3:12479511-12479530 Msa0104540:intron 25.0%
! ATTCATTGAAGATTATTGGA+CGG + chr1_3:12480292-12480311 Msa0104540:intron 25.0%
!!! TTCAACACTTCATTTTTTCT+CGG - chr1_3:12480894-12480913 None:intergenic 25.0%
!!! AATTTTTAAGGTTTTGAGCA+AGG - chr1_3:12481039-12481058 None:intergenic 25.0%
! ATAGTTAGAGCATATTGAAT+TGG - chr1_3:12481227-12481246 None:intergenic 25.0%
! TATGAGAAATTCATCATCAT+TGG - chr1_3:12481328-12481347 None:intergenic 25.0%
!!! TGATGACGATATTAGTTTTA+AGG + chr1_3:12481580-12481599 Msa0104540:three_prime_UTR 25.0%
! ACAGATTTTACGATGAAAGA+TGG + chr1_3:12478664-12478683 Msa0104540:CDS 30.0%
!!! GATTTTTTCGGTGTTTATGA+CGG + chr1_3:12478697-12478716 Msa0104540:CDS 30.0%
! TTTTGGTAAAATGGATAGAG+AGG + chr1_3:12478840-12478859 Msa0104540:CDS 30.0%
!! TAATTTTGAAGACTAGTGTC+AGG + chr1_3:12479556-12479575 Msa0104540:intron 30.0%
! TAGTTGCTAGCTTATGATAA+TGG + chr1_3:12479910-12479929 Msa0104540:intron 30.0%
!! AAATGGCAAGAGTTTTTCAA+TGG - chr1_3:12480042-12480061 None:intergenic 30.0%
! CATCTCTGCTATTCTAAAAA+TGG - chr1_3:12480059-12480078 None:intergenic 30.0%
GATCATATACACAAAACATG+TGG - chr1_3:12480219-12480238 None:intergenic 30.0%
AATCCCACATAATCAAAGTT+TGG + chr1_3:12480471-12480490 Msa0104540:intron 30.0%
ATCCCACATAATCAAAGTTT+GGG + chr1_3:12480472-12480491 Msa0104540:intron 30.0%
TCGAGTTTAGTTAAAAACTC+AGG - chr1_3:12480937-12480956 None:intergenic 30.0%
!! TCAGGTTTTGATATCACATA+TGG - chr1_3:12481285-12481304 None:intergenic 30.0%
!! TGAAGCATTTTCTTACAACT+TGG - chr1_3:12481398-12481417 None:intergenic 30.0%
GTTGTAAGAAAATGCTTCAA+AGG + chr1_3:12481399-12481418 Msa0104540:CDS 30.0%
AATGCTTCAAAGGTCAAATT+AGG + chr1_3:12481409-12481428 Msa0104540:CDS 30.0%
TAGATCTTAATGTTCCTCTT+AGG - chr1_3:12481551-12481570 None:intergenic 30.0%
!!! GTGTCGTTTCATGTTTTTCA+TGG - chr1_3:12478202-12478221 None:intergenic 35.0%
AAACATGAAACGACACTCAT+CGG + chr1_3:12478206-12478225 Msa0104540:CDS 35.0%
GTTAGCAACTTCTTCATCAT+CGG + chr1_3:12478428-12478447 Msa0104540:CDS 35.0%
TTATACACGGAAAATCCTTG+AGG + chr1_3:12478505-12478524 Msa0104540:intron 35.0%
!!! GGAGAGAAGTGTGATTTTTT+CGG + chr1_3:12478685-12478704 Msa0104540:CDS 35.0%
GGATTTGTCAAGTGATCATA+AGG + chr1_3:12478990-12479009 Msa0104540:CDS 35.0%
GATCAATCTCAAACAGATCT+TGG + chr1_3:12479122-12479141 Msa0104540:intron 35.0%
AAAGTTTAGAAGTCTCTGCA+TGG - chr1_3:12479271-12479290 None:intergenic 35.0%
TCTATTCTCATCAACTCATC+AGG - chr1_3:12479777-12479796 None:intergenic 35.0%
TTGATGAGAATAGAAGAAGC+TGG + chr1_3:12479783-12479802 Msa0104540:CDS 35.0%
GGAAGAGTTATAAACTGGAA+TGG + chr1_3:12479807-12479826 Msa0104540:CDS 35.0%
AAGCAATGTGTCATCTTGAT+TGG - chr1_3:12480135-12480154 None:intergenic 35.0%
GCTTAAATTCTCTCGTAAAG+AGG + chr1_3:12480151-12480170 Msa0104540:intron 35.0%
!! CGTTGATTTCAAAGAGCTTA+AGG + chr1_3:12480430-12480449 Msa0104540:intron 35.0%
CACCCAAACTTTGATTATGT+GGG - chr1_3:12480477-12480496 None:intergenic 35.0%
ACACCCAAACTTTGATTATG+TGG - chr1_3:12480478-12480497 None:intergenic 35.0%
!!! TTTTAAGGTTTTGAGCAAGG+TGG - chr1_3:12481036-12481055 None:intergenic 35.0%
CTATGTAATTTGATGCATGC+AGG + chr1_3:12481243-12481262 Msa0104540:intron 35.0%
TTTCTCATACTAGCAAGTGA+TGG + chr1_3:12481339-12481358 Msa0104540:CDS 35.0%
AAATTAGGAGAGTTTGTCGT+GGG + chr1_3:12481424-12481443 Msa0104540:CDS 35.0%
! ACTATTGTCTGAGATAGCAT+TGG + chr1_3:12481485-12481504 Msa0104540:CDS 35.0%
ACCGGAGAAGGTTGAAAATT+CGG + chr1_3:12478289-12478308 Msa0104540:CDS 40.0%
! TCCGAATTTTCAACCTTCTC+CGG - chr1_3:12478293-12478312 None:intergenic 40.0%
TCGACGAGAGATTCATGAAT+CGG + chr1_3:12478389-12478408 Msa0104540:CDS 40.0%
GGAGAGATTACATAGGATTG+TGG + chr1_3:12478753-12478772 Msa0104540:CDS 40.0%
GAGATTACATAGGATTGTGG+CGG + chr1_3:12478756-12478775 Msa0104540:CDS 40.0%
! GAATGATGGGGAATTTGAGT+GGG + chr1_3:12478798-12478817 Msa0104540:CDS 40.0%
!!! GGAAGGGTGTTTTGGTAAAA+TGG + chr1_3:12478831-12478850 Msa0104540:CDS 40.0%
TGGTAAAATGGATAGAGAGG+TGG + chr1_3:12478843-12478862 Msa0104540:CDS 40.0%
TAAAATGGATAGAGAGGTGG+CGG + chr1_3:12478846-12478865 Msa0104540:CDS 40.0%
ATGAGAATAGAAGAAGCTGG+TGG + chr1_3:12479786-12479805 Msa0104540:CDS 40.0%
CTGGTGGAAGAGTTATAAAC+TGG + chr1_3:12479802-12479821 Msa0104540:CDS 40.0%
TTGCAAGAACACCAAGAACA+CGG - chr1_3:12479836-12479855 None:intergenic 40.0%
TAACCAACCTATAGATCGTG+AGG - chr1_3:12479859-12479878 None:intergenic 40.0%
! TTGTTTCTTGTGTGTGCCTA+TGG + chr1_3:12480361-12480380 Msa0104540:intron 40.0%
ATTTCCACGTGTTTGACCAT+AGG - chr1_3:12480380-12480399 None:intergenic 40.0%
! CAAAGAGCTTAAGGTATCCT+TGG + chr1_3:12480439-12480458 Msa0104540:intron 40.0%
! GTGGGATTTACAGTTTTCCA+AGG - chr1_3:12480459-12480478 None:intergenic 40.0%
CAAATTAGGAGAGTTTGTCG+TGG + chr1_3:12481423-12481442 Msa0104540:CDS 40.0%
!! TCTGAGATAGCATTGGCAAA+GGG + chr1_3:12481492-12481511 Msa0104540:CDS 40.0%
GTCATAGTTGTTGACCTAAG+AGG + chr1_3:12481534-12481553 Msa0104540:CDS 40.0%
CGAAGCTGGAGAATATTCAC+CGG + chr1_3:12478271-12478290 Msa0104540:CDS 45.0%
TGGAGAATATTCACCGGAGA+AGG + chr1_3:12478277-12478296 Msa0104540:CDS 45.0%
TGTCAAGCAAAGATCCACGT+CGG + chr1_3:12478327-12478346 Msa0104540:CDS 45.0%
CGTTTCTAAACTACCGTCGT+CGG - chr1_3:12478361-12478380 None:intergenic 45.0%
CGACGACGGTAGTTTAGAAA+CGG + chr1_3:12478359-12478378 Msa0104540:CDS 45.0%
AGCAACTTCTTCATCATCGG+AGG + chr1_3:12478431-12478450 Msa0104540:CDS 45.0%
GATCAGTCGTCCAAGCAAAA+CGG + chr1_3:12478459-12478478 Msa0104540:CDS 45.0%
! GTTTACCTCTCCGTTTTGCT+TGG - chr1_3:12478472-12478491 None:intergenic 45.0%
TATGAGATGCACTGTCCTCA+AGG - chr1_3:12478523-12478542 None:intergenic 45.0%
!! ATGGTTCGGTGTCAACGATA+GGG + chr1_3:12478605-12478624 Msa0104540:CDS 45.0%
GATAGGGTGTAGGAAGGAAA+TGG + chr1_3:12478621-12478640 Msa0104540:CDS 45.0%
!! TTCGGTGTTTATGACGGTCA+TGG + chr1_3:12478703-12478722 Msa0104540:CDS 45.0%
CGTGTAGGGAGAGATTACAT+AGG + chr1_3:12478746-12478765 Msa0104540:CDS 45.0%
ATTACATAGGATTGTGGCGG+AGG + chr1_3:12478759-12478778 Msa0104540:CDS 45.0%
! TGGAGAAGTACGGGAATGAT+GGG + chr1_3:12478785-12478804 Msa0104540:CDS 45.0%
! GGAATGATGGGGAATTTGAG+TGG + chr1_3:12478797-12478816 Msa0104540:CDS 45.0%
ATTTGAGTGGGAGAGAGTGA+TGG + chr1_3:12478810-12478829 Msa0104540:CDS 45.0%
!!! AGAGTGATGGAAGGGTGTTT+TGG + chr1_3:12478823-12478842 Msa0104540:CDS 45.0%
AAAATGGATAGAGAGGTGGC+GGG + chr1_3:12478847-12478866 Msa0104540:CDS 45.0%
TTGTTTGTCCACAGCCAAAC+AGG + chr1_3:12479751-12479770 Msa0104540:intron 45.0%
ATCAACTCATCAGGCCTGTT+TGG - chr1_3:12479768-12479787 None:intergenic 45.0%
CTTGCAACCTCACGATCTAT+AGG + chr1_3:12479849-12479868 Msa0104540:CDS 45.0%
CAACCTCACGATCTATAGGT+TGG + chr1_3:12479853-12479872 Msa0104540:intron 45.0%
CTCTTTGTCACAGTGACTTC+AGG - chr1_3:12481303-12481322 None:intergenic 45.0%
TACTAGCAAGTGATGGCTTG+TGG + chr1_3:12481346-12481365 Msa0104540:CDS 45.0%
! ACTAGCAAGTGATGGCTTGT+GGG + chr1_3:12481347-12481366 Msa0104540:CDS 45.0%
!! GTCTGAGATAGCATTGGCAA+AGG + chr1_3:12481491-12481510 Msa0104540:CDS 45.0%
!! ATAATTAATTAATTAATCAA+TGG + chr1_3:12479938-12479957 Msa0104540:intron 5.0%
!!! TTTTCAATTTTAAAATTATT+TGG + chr1_3:12480246-12480265 Msa0104540:intron 5.0%
!!! TATTCAAAATTTAATTTTTA+AGG - chr1_3:12481051-12481070 None:intergenic 5.0%
CAACTGGAGAATCCACTCGT+CGG - chr1_3:12478242-12478261 None:intergenic 50.0%
AGCTTCGTAACTGCTCCAAC+TGG - chr1_3:12478258-12478277 None:intergenic 50.0%
AGTTGGAGCAGTTACGAAGC+TGG + chr1_3:12478257-12478276 Msa0104540:CDS 50.0%
GCAAAGATCCACGTCGGAAA+TGG + chr1_3:12478333-12478352 Msa0104540:CDS 50.0%
CAACAACGACCTCTATCGCA+TGG + chr1_3:12478586-12478605 Msa0104540:CDS 50.0%
ACGACCTCTATCGCATGGTT+CGG + chr1_3:12478591-12478610 Msa0104540:CDS 50.0%
!! CATGGTTCGGTGTCAACGAT+AGG + chr1_3:12478604-12478623 Msa0104540:CDS 50.0%
GTCAACGATAGGGTGTAGGA+AGG + chr1_3:12478615-12478634 Msa0104540:CDS 50.0%
AGGGTGTAGGAAGGAAATGG+AGG + chr1_3:12478624-12478643 Msa0104540:CDS 50.0%
AATGGAGGATGCAGTGAGTG+TGG + chr1_3:12478639-12478658 Msa0104540:CDS 50.0%
GGTGTTTATGACGGTCATGG+TGG + chr1_3:12478706-12478725 Msa0104540:CDS 50.0%
! GTGGAGAAGTACGGGAATGA+TGG + chr1_3:12478784-12478803 Msa0104540:CDS 50.0%
! GGAGAAGTACGGGAATGATG+GGG + chr1_3:12478786-12478805 Msa0104540:CDS 50.0%
! AGTGGGAGAGAGTGATGGAA+GGG + chr1_3:12478815-12478834 Msa0104540:CDS 50.0%
AGTTGTGGCGGTTGTTGTGA+AGG + chr1_3:12478903-12478922 Msa0104540:CDS 50.0%
GCGATCGTTGTTGCAAACTG+TGG + chr1_3:12478928-12478947 Msa0104540:CDS 50.0%
!! TGGTGATTCTAGAGCCGTCT+TGG + chr1_3:12478948-12478967 Msa0104540:CDS 50.0%
!! GGTGATTCTAGAGCCGTCTT+GGG + chr1_3:12478949-12478968 Msa0104540:CDS 50.0%
TTCACCACCTCTTCCCAAGA+CGG - chr1_3:12478965-12478984 None:intergenic 50.0%
CAAGAACACCAAGAACACGG+TGG - chr1_3:12479833-12479852 None:intergenic 50.0%
TGTGCCTATGGTCAAACACG+TGG + chr1_3:12480373-12480392 Msa0104540:intron 50.0%
! CTAGCAAGTGATGGCTTGTG+GGG + chr1_3:12481348-12481367 Msa0104540:CDS 50.0%
GGAATCTTCTCTCCGACGAG+TGG + chr1_3:12478227-12478246 Msa0104540:CDS 55.0%
! CGACGAGTGGATTCTCCAGT+TGG + chr1_3:12478240-12478259 Msa0104540:CDS 55.0%
GTCGTCCAAGCAAAACGGAG+AGG + chr1_3:12478464-12478483 Msa0104540:CDS 55.0%
GACACCGAACCATGCGATAG+AGG - chr1_3:12478598-12478617 None:intergenic 55.0%
! CGGTGTCAACGATAGGGTGT+AGG + chr1_3:12478611-12478630 Msa0104540:CDS 55.0%
! ACATAGGATTGTGGCGGAGG+AGG + chr1_3:12478762-12478781 Msa0104540:CDS 55.0%
! GAGTGGGAGAGAGTGATGGA+AGG + chr1_3:12478814-12478833 Msa0104540:CDS 55.0%
CACAACAACCGCCACAACTG+CGG - chr1_3:12478902-12478921 None:intergenic 55.0%
TGTGGCGGTTGTTGTGAAGG+AGG + chr1_3:12478906-12478925 Msa0104540:CDS 55.0%
! TCTAGAGCCGTCTTGGGAAG+AGG + chr1_3:12478955-12478974 Msa0104540:CDS 55.0%
GGGAAGAGGTGGTGAAGCTT+TGG + chr1_3:12478969-12478988 Msa0104540:CDS 55.0%
TCATCAGGCCTGTTTGGCTG+TGG - chr1_3:12479762-12479781 None:intergenic 55.0%
TGGAATGGCCACCGTGTTCT+TGG + chr1_3:12479822-12479841 Msa0104540:CDS 55.0%
GTCGGAAATGGCTCCGACGA+CGG + chr1_3:12478345-12478364 Msa0104540:CDS 60.0%
! TGACGGTCATGGTGGTGCTC+AGG + chr1_3:12478714-12478733 Msa0104540:CDS 60.0%
! TCATGGTGGTGCTCAGGTGG+CGG + chr1_3:12478720-12478739 Msa0104540:CDS 60.0%
! TAGGATTGTGGCGGAGGAGG+TGG + chr1_3:12478765-12478784 Msa0104540:CDS 60.0%
GCGGAGGAGGTGGAGAAGTA+CGG + chr1_3:12478775-12478794 Msa0104540:CDS 60.0%
! CGGAGGAGGTGGAGAAGTAC+GGG + chr1_3:12478776-12478795 Msa0104540:CDS 60.0%
CACAACTGCGGTAGACCCCA+CGG - chr1_3:12478890-12478909 None:intergenic 60.0%
AGAGCCGTCTTGGGAAGAGG+TGG + chr1_3:12478958-12478977 Msa0104540:CDS 60.0%
CGTCGGAGCCATTTCCGACG+TGG - chr1_3:12478344-12478363 None:intergenic 65.0%
! CGGTCATGGTGGTGCTCAGG+TGG + chr1_3:12478717-12478736 Msa0104540:CDS 65.0%
!! TCAGGTGGCGGAGGCGTGTA+GGG + chr1_3:12478732-12478751 Msa0104540:CDS 65.0%
TGATGCCGCGGTTAGGACCG+TGG + chr1_3:12478870-12478889 Msa0104540:CDS 65.0%
GATGCCGCGGTTAGGACCGT+GGG + chr1_3:12478871-12478890 Msa0104540:CDS 65.0%
ATGCCGCGGTTAGGACCGTG+GGG + chr1_3:12478872-12478891 Msa0104540:CDS 65.0%
AGACCCCACGGTCCTAACCG+CGG - chr1_3:12478878-12478897 None:intergenic 65.0%
CGTGGGGTCTACCGCAGTTG+TGG + chr1_3:12478888-12478907 Msa0104540:CDS 65.0%
GGGGTCTACCGCAGTTGTGG+CGG + chr1_3:12478891-12478910 Msa0104540:CDS 65.0%
! TGGTGGTGCTCAGGTGGCGG+AGG + chr1_3:12478723-12478742 Msa0104540:CDS 70.0%
!! CTCAGGTGGCGGAGGCGTGT+AGG + chr1_3:12478731-12478750 Msa0104540:CDS 70.0%
!! AGAGGTGGCGGGTGATGCCG+CGG + chr1_3:12478858-12478877 Msa0104540:CDS 70.0%
! TGGCGGGTGATGCCGCGGTT+AGG + chr1_3:12478863-12478882 Msa0104540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 12478186 12481624 12478186 ID=Msa0104540;Name=Msa0104540
chr1_3 mRNA 12478186 12481624 12478186 ID=Msa0104540-mRNA-1;Parent=Msa0104540;Name=Msa0104540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|4|49|386
chr1_3 exon 12478186 12478485 12478186 ID=Msa0104540-mRNA-1:exon:4936;Parent=Msa0104540-mRNA-1
chr1_3 exon 12478568 12479011 12478568 ID=Msa0104540-mRNA-1:exon:4937;Parent=Msa0104540-mRNA-1
chr1_3 exon 12479765 12479870 12479765 ID=Msa0104540-mRNA-1:exon:4938;Parent=Msa0104540-mRNA-1
chr1_3 exon 12481265 12481624 12481265 ID=Msa0104540-mRNA-1:exon:4939;Parent=Msa0104540-mRNA-1
chr1_3 CDS 12478186 12478485 12478186 ID=Msa0104540-mRNA-1:cds;Parent=Msa0104540-mRNA-1
chr1_3 CDS 12478568 12479011 12478568 ID=Msa0104540-mRNA-1:cds;Parent=Msa0104540-mRNA-1
chr1_3 CDS 12479765 12479870 12479765 ID=Msa0104540-mRNA-1:cds;Parent=Msa0104540-mRNA-1
chr1_3 CDS 12481265 12481575 12481265 ID=Msa0104540-mRNA-1:cds;Parent=Msa0104540-mRNA-1
chr1_3 three_prime_UTR 12481576 12481624 12481576 ID=Msa0104540-mRNA-1:three_prime_utr;Parent=Msa0104540-mRNA-1
Gene Sequence

>Msa0104540

ATGCAAAAAACGACCATGAAAAACATGAAACGACACTCATCGGAATCTTCTCTCCGACGAGTGGATTCTCCAGTTGGAGCAGTTACGAAGCTGGAGAATATTCACCGGAGAAGGTTGAAAATTCGGAGAATGAAGTATAGTTGTCAAGCAAAGATCCACGTCGGAAATGGCTCCGACGACGGTAGTTTAGAAACGGAGAATGCTCGACGAGAGATTCATGAATCGGTTGAGATATCGTTGTCGTTAGCAACTTCTTCATCATCGGAGGAAGATGATCAGTCGTCCAAGCAAAACGGAGAGGTGAAGCATTATCAACAACAACAACGACCTCTATCGCATGGTTCGGTGTCAACGATAGGGTGTAGGAAGGAAATGGAGGATGCAGTGAGTGTGGAGACAGATTTTACGATGAAAGATGGAGAGAAGTGTGATTTTTTCGGTGTTTATGACGGTCATGGTGGTGCTCAGGTGGCGGAGGCGTGTAGGGAGAGATTACATAGGATTGTGGCGGAGGAGGTGGAGAAGTACGGGAATGATGGGGAATTTGAGTGGGAGAGAGTGATGGAAGGGTGTTTTGGTAAAATGGATAGAGAGGTGGCGGGTGATGCCGCGGTTAGGACCGTGGGGTCTACCGCAGTTGTGGCGGTTGTTGTGAAGGAGGCGATCGTTGTTGCAAACTGTGGTGATTCTAGAGCCGTCTTGGGAAGAGGTGGTGAAGCTTTGGATTTGTCAAGTGATCATAAGCCAAACAGGCCTGATGAGTTGATGAGAATAGAAGAAGCTGGTGGAAGAGTTATAAACTGGAATGGCCACCGTGTTCTTGGTGTTCTTGCAACCTCACGATCTATAGGAGATGAATATCTTCGACCATATGTGATATCAAAACCTGAAGTCACTGTGACAAAGAGAACCAATGATGATGAATTTCTCATACTAGCAAGTGATGGCTTGTGGGGTGTAATGTCTAGTGAAATTGCATGCCAAGTTGTAAGAAAATGCTTCAAAGGTCAAATTAGGAGAGTTTGTCGTGGGAATGAGAATCAAAGTAATCGTGCTGCTGAAGCTGCAACACTATTGTCTGAGATAGCATTGGCAAAGGGTAGCAGAGACAATACAAGTGTCATAGTTGTTGACCTAAGAGGAACATTAAGATCTAGTTGA
Protein sequence

>Msa0104540

MQKTTMKNMKRHSSESSLRRVDSPVGAVTKLENIHRRRLKIRRMKYSCQAKIHVGNGSDDGSLETENARREIHESVEISLSLATSSSSEEDDQSSKQNGEVKHYQQQQRPLSHGSVSTIGCRKEMEDAVSVETDFTMKDGEKCDFFGVYDGHGGAQVAEACRERLHRIVAEEVEKYGNDGEFEWERVMEGCFGKMDREVAGDAAVRTVGSTAVVAVVVKEAIVVANCGDSRAVLGRGGEALDLSSDHKPNRPDELMRIEEAGGRVINWNGHRVLGVLATSRSIGDEYLRPYVISKPEVTVTKRTNDDEFLILASDGLWGVMSSEIACQVVRKCFKGQIRRVCRGNENQSNRAAEAATLLSEIALAKGSRDNTSVIVVDLRGTLRSS*