AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0150560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150560 MtrunA17_Chr1g0158781 93.438 381 24 1 1 380 6 386 0.0 677
Msa0150560 MtrunA17_Chr3g0112291 50.955 314 120 10 84 374 74 376 5.35e-90 276
Msa0150560 MtrunA17_Chr5g0396731 53.684 285 117 5 106 377 72 354 1.08e-89 274
Msa0150560 MtrunA17_Chr4g0070871 47.401 327 133 8 87 376 182 506 2.49e-83 263
Msa0150560 MtrunA17_Chr1g0150781 50.000 306 112 7 108 374 241 544 3.51e-82 261
Msa0150560 MtrunA17_Chr3g0135961 48.232 311 117 6 108 375 232 541 3.05e-81 258
Msa0150560 MtrunA17_Chr5g0435721 52.536 276 103 5 107 360 193 462 6.36e-80 253
Msa0150560 MtrunA17_Chr2g0299981 45.000 320 127 7 104 375 219 537 3.35e-78 250
Msa0150560 MtrunA17_Chr8g0389921 46.599 294 128 5 105 374 147 435 2.43e-72 232
Msa0150560 MtrunA17_Chr1g0150451 38.754 289 146 8 86 371 61 321 1.77e-46 162
Msa0150560 MtrunA17_Chr3g0136711 37.710 297 154 8 78 371 10 278 1.72e-45 158
Msa0150560 MtrunA17_Chr1g0212961 39.338 272 130 9 105 371 94 335 1.33e-43 154
Msa0150560 MtrunA17_Chr3g0126511 37.778 270 141 7 105 371 93 338 1.48e-40 147
Msa0150560 MtrunA17_Chr3g0105371 37.079 267 146 7 114 377 95 342 7.49e-39 142
Msa0150560 MtrunA17_Chr3g0105351 36.882 263 146 7 114 374 71 315 1.46e-38 140
Msa0150560 MtrunA17_Chr5g0430481 36.466 266 143 7 114 374 131 375 3.85e-38 140
Msa0150560 MtrunA17_Chr1g0194191 32.584 356 199 12 43 373 10 349 4.02e-37 138
Msa0150560 MtrunA17_Chr5g0407161 33.217 286 146 11 105 371 84 343 9.38e-35 131
Msa0150560 MtrunA17_Chr4g0065141 32.517 286 153 9 105 371 84 348 1.14e-34 131
Msa0150560 MtrunA17_Chr4g0050381 35.317 252 124 7 134 375 56 278 2.42e-33 125
Msa0150560 MtrunA17_Chr3g0138281 33.216 283 153 8 105 371 81 343 2.64e-33 127
Msa0150560 MtrunA17_Chr2g0293811 32.394 284 159 10 108 373 63 331 3.45e-32 124
Msa0150560 MtrunA17_Chr8g0360351 36.293 259 132 8 119 371 48 279 9.00e-31 118
Msa0150560 MtrunA17_Chr3g0136811 30.816 331 158 10 105 380 22 336 1.59e-30 119
Msa0150560 MtrunA17_Chr5g0426141 34.252 254 134 8 128 374 55 282 3.78e-30 117
Msa0150560 MtrunA17_Chr2g0317021 34.483 261 142 7 118 374 98 333 5.23e-30 117
Msa0150560 MtrunA17_Chr1g0150071 29.607 331 162 11 105 380 22 336 1.70e-29 117
Msa0150560 MtrunA17_Chr1g0171571 34.722 288 147 11 103 374 383 645 2.65e-28 116
Msa0150560 MtrunA17_Chr4g0001761 30.448 335 151 10 105 379 22 334 3.41e-28 113
Msa0150560 MtrunA17_Chr4g0051661 33.475 236 131 6 139 371 183 395 5.00e-28 113
Msa0150560 MtrunA17_Chr3g0144111 34.583 240 109 9 139 371 27 225 5.53e-28 110
Msa0150560 MtrunA17_Chr3g0115851 31.849 292 167 11 88 374 18 282 8.69e-28 110
Msa0150560 MtrunA17_Chr2g0279151 34.050 279 152 11 102 374 29 281 6.22e-27 108
Msa0150560 MtrunA17_Chr3g0127091 29.841 315 159 14 104 376 58 352 1.29e-25 106
Msa0150560 MtrunA17_Chr6g0483411 33.193 238 133 9 114 329 52 285 1.32e-25 105
Msa0150560 MtrunA17_Chr1g0151781 32.083 240 125 8 120 324 52 288 2.30e-25 105
Msa0150560 MtrunA17_Chr4g0067711 32.883 222 113 6 139 324 91 312 1.55e-23 100
Msa0150560 MtrunA17_Chr2g0295401 31.364 220 115 7 141 324 94 313 2.73e-23 99.8
Msa0150560 MtrunA17_Chr4g0066371 28.620 297 154 12 117 375 66 342 3.03e-23 100
Msa0150560 MtrunA17_Chr3g0089721 31.559 263 120 12 115 326 38 291 3.73e-22 96.7
Msa0150560 MtrunA17_Chr1g0185141 30.216 278 132 10 148 373 171 438 3.82e-22 98.6
Msa0150560 MtrunA17_Chr3g0089711 31.179 263 121 12 115 326 38 291 1.47e-21 94.7
Msa0150560 MtrunA17_Chr4g0004971 31.381 239 120 9 120 317 61 296 1.70e-21 94.7
Msa0150560 MtrunA17_Chr1g0192421 33.333 222 112 8 139 324 89 310 3.08e-21 94.0
Msa0150560 MtrunA17_Chr1g0213351 25.776 322 167 9 109 373 48 354 2.11e-20 91.7
Msa0150560 MtrunA17_Chr8g0371321 29.961 257 138 8 109 325 47 301 2.20e-20 91.7
Msa0150560 MtrunA17_Chr1g0181901 27.953 254 145 6 109 324 44 297 5.47e-20 90.9
Msa0150560 MtrunA17_Chr2g0324061 30.435 253 125 8 120 324 74 323 7.75e-20 90.9
Msa0150560 MtrunA17_Chr7g0263281 26.493 268 151 6 109 334 39 302 1.17e-19 89.4
Msa0150560 MtrunA17_Chr1g0211251 28.409 264 151 8 109 334 49 312 1.31e-19 89.7
Msa0150560 MtrunA17_Chr7g0250061 30.342 234 123 6 139 334 76 307 2.54e-19 88.6
Msa0150560 MtrunA17_Chr1g0207571 29.237 236 125 5 139 334 61 294 4.79e-19 87.8
Msa0150560 MtrunA17_Chr7g0243571 30.709 254 123 10 120 324 75 324 5.67e-19 88.2
Msa0150560 MtrunA17_Chr7g0256751 30.040 253 136 9 109 325 44 291 2.92e-18 85.9
Msa0150560 MtrunA17_Chr1g0153671 27.439 328 187 11 62 373 2 294 5.22e-18 85.1
Msa0150560 MtrunA17_Chr3g0133801 27.640 322 184 12 68 373 7 295 8.19e-18 84.7
Msa0150560 MtrunA17_Chr2g0294291 26.415 265 132 9 109 326 51 299 1.23e-17 83.6
Msa0150560 MtrunA17_Chr7g0221691 31.923 260 120 12 120 324 112 369 1.40e-17 84.0
Msa0150560 MtrunA17_Chr7g0272061 30.736 231 115 9 139 324 91 321 2.20e-17 82.8
Msa0150560 MtrunA17_Chr2g0286951 27.907 301 159 11 117 379 67 347 4.73e-17 82.0
Msa0150560 MtrunA17_Chr7g0249421 32.990 194 111 5 149 324 152 344 5.76e-17 82.4
Msa0150560 MtrunA17_Chr4g0022171 29.134 254 128 8 120 324 80 330 1.11e-16 81.3
Msa0150560 MtrunA17_Chr1g0209451 26.444 329 185 12 64 373 7 297 1.25e-16 80.9
Msa0150560 MtrunA17_Chr1g0175381 27.536 276 158 9 109 348 55 324 1.28e-15 77.8
Msa0150560 MtrunA17_Chr1g0192471 29.097 299 168 13 95 373 23 297 1.47e-15 77.8
Msa0150560 MtrunA17_Chr7g0256771 28.627 255 137 9 109 325 45 292 3.07e-15 75.9
Msa0150560 MtrunA17_Chr8g0342431 29.044 272 120 10 120 324 69 334 4.15e-15 76.3
Msa0150560 MtrunA17_Chr7g0271971 27.703 296 176 11 95 373 23 297 6.80e-15 75.9
Msa0150560 MtrunA17_Chr7g0238501 23.958 288 170 9 139 377 263 550 1.40e-14 75.1
Msa0150560 MtrunA17_Chr3g0089691 34.810 158 68 6 202 326 50 205 2.22e-14 73.2
Msa0150560 MtrunA17_Chr7g0225501 29.644 253 139 11 140 373 87 319 3.16e-14 73.9
Msa0150560 MtrunA17_Chr4g0063111 28.514 249 141 8 107 324 48 290 1.67e-13 71.6
Msa0150560 MtrunA17_Chr5g0394181 25.532 282 165 9 114 373 339 597 2.62e-12 68.2
Msa0150560 MtrunA17_Chr4g0063051 27.615 239 133 10 109 326 36 255 5.21e-12 66.6
Msa0150560 MtrunA17_Chr4g0068971 35.766 137 67 7 243 373 110 231 8.15e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150560 AT2G29380.1 48.795 332 141 8 61 374 41 361 2.14e-90 276
Msa0150560 AT1G07430.1 46.023 352 134 8 72 374 90 434 3.77e-88 273
Msa0150560 AT3G11410.1 54.878 246 85 3 108 330 106 348 4.68e-84 261
Msa0150560 AT5G59220.1 55.738 244 85 4 107 332 112 350 4.59e-82 257
Msa0150560 AT4G26080.1 49.164 299 122 7 104 374 127 423 9.13e-81 254
Msa0150560 AT1G72770.4 47.649 319 110 8 108 375 191 503 4.02e-80 254
Msa0150560 AT1G72770.1 47.649 319 110 8 108 375 191 503 4.02e-80 254
Msa0150560 AT1G72770.3 47.649 319 110 8 108 375 191 503 4.02e-80 254
Msa0150560 AT5G57050.2 48.355 304 124 7 104 375 71 373 1.69e-78 246
Msa0150560 AT5G57050.1 48.355 304 124 7 104 375 111 413 2.13e-78 248
Msa0150560 AT1G17550.1 44.379 338 138 8 86 375 168 503 7.15e-78 249
Msa0150560 AT1G17550.2 44.379 338 138 8 86 375 168 503 7.15e-78 249
Msa0150560 AT5G51760.2 41.298 339 156 9 75 376 52 384 1.15e-68 221
Msa0150560 AT5G51760.1 41.298 339 156 9 75 376 82 414 3.08e-68 221
Msa0150560 AT5G59220.2 52.105 190 68 4 107 278 112 296 3.90e-51 173
Msa0150560 AT1G72770.2 49.763 211 66 6 108 278 191 401 1.32e-49 172
Msa0150560 AT1G72770.5 49.763 211 66 6 108 278 191 401 1.32e-49 172
Msa0150560 AT5G57050.3 50.249 201 76 6 104 282 111 309 1.14e-48 167
Msa0150560 AT5G10740.1 37.748 302 157 10 73 371 4 277 1.36e-46 163
Msa0150560 AT5G10740.2 37.748 302 157 10 73 371 4 277 1.36e-46 163
Msa0150560 AT4G31750.2 37.919 298 154 8 77 371 8 277 2.44e-46 160
Msa0150560 AT4G31750.1 37.919 298 154 8 77 371 8 277 4.30e-46 160
Msa0150560 AT4G31750.3 37.919 298 154 8 77 371 8 277 4.30e-46 160
Msa0150560 AT1G43900.1 38.519 270 138 7 105 371 122 366 5.84e-45 159
Msa0150560 AT5G24940.1 39.051 274 140 7 101 371 28 277 1.92e-44 159
Msa0150560 AT1G67820.2 44.037 218 115 4 108 324 86 297 1.73e-42 153
Msa0150560 AT1G67820.1 44.037 218 115 4 108 324 122 333 2.98e-42 153
Msa0150560 AT1G07160.1 31.967 366 219 9 12 373 37 376 3.65e-41 149
Msa0150560 AT2G40180.1 38.202 267 149 6 114 377 136 389 6.77e-41 149
Msa0150560 AT2G30020.1 38.931 262 144 6 114 374 147 393 8.90e-41 148
Msa0150560 AT5G53140.1 36.727 275 143 8 105 374 100 348 5.69e-40 147
Msa0150560 AT5G53140.2 36.727 275 143 8 105 374 100 348 5.69e-40 147
Msa0150560 AT2G33700.1 35.125 279 144 11 108 371 86 342 1.53e-36 137
Msa0150560 AT3G51470.2 33.571 280 154 9 102 371 24 281 1.58e-36 135
Msa0150560 AT3G51470.1 32.353 306 175 9 76 371 42 325 3.48e-36 135
Msa0150560 AT3G62260.2 33.569 283 154 9 108 371 80 347 2.52e-35 134
Msa0150560 AT3G62260.1 33.569 283 154 9 108 371 79 346 2.60e-35 133
Msa0150560 AT3G62260.3 35.366 246 131 8 139 371 27 257 1.27e-34 129
Msa0150560 AT2G25620.1 33.564 289 148 9 108 374 91 357 6.12e-33 127
Msa0150560 AT2G25620.2 33.564 289 148 9 108 374 91 357 6.12e-33 127
Msa0150560 AT1G48040.1 35.689 283 148 10 108 371 80 347 5.88e-32 124
Msa0150560 AT1G78200.5 33.992 253 137 6 129 374 9 238 1.76e-31 119
Msa0150560 AT1G78200.4 33.992 253 137 6 129 374 9 238 1.76e-31 119
Msa0150560 AT3G15260.2 33.333 315 172 10 65 374 8 289 2.52e-31 120
Msa0150560 AT3G15260.1 33.333 315 172 10 65 374 8 289 2.52e-31 120
Msa0150560 AT1G78200.1 33.992 253 137 6 129 374 54 283 4.23e-31 120
Msa0150560 AT1G78200.3 33.992 253 137 6 129 374 54 283 4.23e-31 120
Msa0150560 AT1G78200.2 33.992 253 137 6 129 374 54 283 4.23e-31 120
Msa0150560 AT1G34750.2 34.263 251 136 7 129 374 56 282 2.94e-30 117
Msa0150560 AT1G34750.1 34.263 251 136 7 129 374 56 282 2.94e-30 117
Msa0150560 AT1G34750.3 34.263 251 136 7 129 374 56 282 2.94e-30 117
Msa0150560 AT2G25070.1 29.846 325 157 11 105 374 22 330 4.22e-29 116
Msa0150560 AT2G25070.2 29.846 325 157 11 105 374 22 330 4.22e-29 116
Msa0150560 AT1G22280.3 34.568 243 132 8 139 374 65 287 4.86e-29 114
Msa0150560 AT4G31860.3 32.959 267 119 7 105 318 22 281 8.68e-29 114
Msa0150560 AT2G40860.1 34.495 287 143 11 105 374 391 649 1.91e-28 117
Msa0150560 AT2G34740.1 32.432 259 146 9 119 373 101 334 2.06e-28 114
Msa0150560 AT2G40860.4 34.495 287 143 11 105 374 293 551 2.37e-28 116
Msa0150560 AT4G31860.1 32.959 267 119 7 105 318 22 281 2.39e-28 114
Msa0150560 AT3G17250.1 28.969 359 197 13 46 371 58 391 1.25e-27 113
Msa0150560 AT1G22280.1 33.745 243 128 8 139 374 65 281 1.82e-27 110
Msa0150560 AT4G27800.1 29.483 329 163 12 87 373 47 348 2.01e-27 112
Msa0150560 AT4G31860.2 32.950 261 115 7 105 312 22 275 2.99e-27 109
Msa0150560 AT4G28400.3 31.154 260 150 7 119 374 27 261 1.39e-26 107
Msa0150560 AT5G26010.1 34.058 276 147 12 75 318 5 277 2.28e-26 108
Msa0150560 AT4G28400.1 31.154 260 150 7 119 374 49 283 3.60e-26 106
Msa0150560 AT2G40860.2 34.298 242 129 8 105 329 391 619 1.46e-25 108
Msa0150560 AT4G32950.1 33.333 270 144 11 104 351 39 294 1.68e-25 105
Msa0150560 AT1G34750.4 36.649 191 108 6 129 314 56 238 2.49e-25 103
Msa0150560 AT4G11040.1 32.130 277 124 10 107 379 79 295 2.50e-25 104
Msa0150560 AT2G20630.1 31.907 257 146 7 119 371 45 276 3.39e-25 103
Msa0150560 AT2G20630.2 31.641 256 146 7 119 370 45 275 1.66e-24 102
Msa0150560 AT3G16800.2 33.333 222 116 9 135 325 89 309 5.76e-24 102
Msa0150560 AT3G16800.1 33.333 222 116 9 135 325 89 309 5.76e-24 102
Msa0150560 AT3G16800.3 33.333 222 116 9 135 325 89 309 5.76e-24 102
Msa0150560 AT1G18030.1 30.072 276 159 10 78 329 50 315 8.05e-24 101
Msa0150560 AT5G02760.1 28.996 269 141 9 109 334 40 301 2.79e-23 100
Msa0150560 AT4G08260.1 32.812 256 125 9 119 374 1 209 3.38e-23 96.7
Msa0150560 AT4G27800.2 28.797 316 156 12 87 360 47 335 3.40e-23 99.4
Msa0150560 AT4G27800.3 29.153 295 146 11 87 339 47 320 4.99e-23 99.0
Msa0150560 AT3G51370.1 31.203 266 141 7 109 334 47 310 5.03e-23 99.8
Msa0150560 AT3G51370.3 31.203 266 141 7 109 334 47 310 5.03e-23 99.8
Msa0150560 AT5G66080.1 31.835 267 139 7 109 334 49 313 5.48e-23 99.8
Msa0150560 AT3G16800.4 33.023 215 112 9 142 325 1 214 7.12e-23 97.1
Msa0150560 AT3G16800.6 33.023 215 112 9 142 325 1 214 7.12e-23 97.1
Msa0150560 AT4G28400.2 34.000 200 119 6 119 314 49 239 7.21e-23 97.1
Msa0150560 AT1G18030.2 30.709 254 142 10 85 314 57 300 4.10e-22 95.9
Msa0150560 AT2G34740.2 32.353 204 125 7 119 318 115 309 7.33e-22 95.5
Msa0150560 AT2G34740.3 32.353 204 125 7 119 318 97 291 7.95e-22 95.1
Msa0150560 AT4G32950.2 33.478 230 126 10 104 311 39 263 2.16e-21 93.2
Msa0150560 AT3G12620.2 28.413 271 142 9 109 334 51 314 4.29e-21 94.4
Msa0150560 AT3G12620.1 28.413 271 142 9 109 334 51 314 4.29e-21 94.4
Msa0150560 AT2G20050.2 31.873 251 118 11 117 326 123 361 5.13e-21 95.5
Msa0150560 AT2G20050.1 31.873 251 118 11 117 326 123 361 5.48e-21 95.5
Msa0150560 AT3G55050.1 27.875 287 159 8 134 376 79 361 5.62e-21 94.0
Msa0150560 AT3G55050.2 27.875 287 159 8 134 376 79 361 5.62e-21 94.0
Msa0150560 AT4G33920.1 28.698 338 173 13 90 373 15 338 6.80e-21 93.6
Msa0150560 AT5G27930.1 33.632 223 111 7 139 324 92 314 4.71e-20 90.9
Msa0150560 AT5G27930.2 33.632 223 111 7 139 324 92 314 4.71e-20 90.9
Msa0150560 AT1G03590.1 30.556 252 125 8 120 324 74 322 4.85e-20 91.7
Msa0150560 AT1G47380.1 29.781 319 179 12 68 373 7 293 6.72e-20 91.3
Msa0150560 AT4G38520.2 29.412 255 142 7 109 325 49 303 1.17e-19 90.1
Msa0150560 AT4G38520.1 29.412 255 142 7 109 325 49 303 1.17e-19 90.1
Msa0150560 AT3G17090.1 27.974 311 178 11 109 379 60 364 1.48e-19 89.7
Msa0150560 AT5G01700.1 31.405 242 130 9 120 327 12 251 2.43e-19 88.6
Msa0150560 AT3G17090.2 28.740 254 139 8 109 326 60 307 3.45e-19 87.8
Msa0150560 AT5G01700.2 31.405 242 130 9 120 327 61 300 6.78e-19 87.8
Msa0150560 AT2G40860.3 33.028 218 116 8 105 305 391 595 2.90e-18 87.0
Msa0150560 AT3G63320.2 31.224 237 111 8 189 377 69 301 3.47e-18 85.5
Msa0150560 AT5G66080.2 34.555 191 89 5 178 334 21 209 9.16e-18 83.2
Msa0150560 AT4G03415.1 30.588 255 124 8 120 324 81 332 1.03e-17 84.7
Msa0150560 AT4G03415.3 30.588 255 124 8 120 324 81 332 1.03e-17 84.7
Msa0150560 AT4G03415.2 30.588 255 124 8 120 324 81 332 1.03e-17 84.7
Msa0150560 AT3G63320.1 31.224 237 111 8 189 377 152 384 1.09e-17 84.7
Msa0150560 AT3G02750.2 37.580 157 80 5 186 324 197 353 1.45e-17 84.7
Msa0150560 AT3G02750.1 37.580 157 80 5 186 324 197 353 1.45e-17 84.7
Msa0150560 AT5G06750.3 28.517 263 131 8 109 326 58 308 1.53e-17 84.0
Msa0150560 AT5G06750.1 28.517 263 131 8 109 326 58 308 1.53e-17 84.0
Msa0150560 AT1G09160.2 30.292 274 155 10 117 373 43 297 2.52e-17 83.6
Msa0150560 AT1G09160.1 30.292 274 155 10 117 373 43 297 2.52e-17 83.6
Msa0150560 AT3G63340.7 31.222 221 102 6 203 377 233 449 4.64e-17 83.6
Msa0150560 AT3G63340.5 31.222 221 102 6 203 377 233 449 4.81e-17 83.6
Msa0150560 AT3G63340.1 31.222 221 102 6 203 377 233 449 4.81e-17 83.6
Msa0150560 AT3G63340.11 31.222 221 102 6 203 377 233 449 5.07e-17 83.6
Msa0150560 AT3G63340.12 31.222 221 102 6 203 377 233 449 5.29e-17 82.8
Msa0150560 AT3G63340.6 31.222 221 102 6 203 377 233 449 5.39e-17 83.6
Msa0150560 AT3G63340.3 31.222 221 102 6 203 377 233 449 5.39e-17 83.6
Msa0150560 AT3G63340.10 31.222 221 102 6 203 377 233 449 5.39e-17 83.6
Msa0150560 AT3G63340.4 31.222 221 102 6 203 377 233 449 5.39e-17 83.6
Msa0150560 AT3G63340.8 31.222 221 102 6 203 377 233 449 5.41e-17 83.6
Msa0150560 AT1G68410.4 30.182 275 148 13 120 373 51 302 6.01e-17 82.4
Msa0150560 AT1G68410.3 30.182 275 148 13 120 373 51 302 6.01e-17 82.4
Msa0150560 AT1G68410.1 30.182 275 148 13 120 373 51 302 6.01e-17 82.4
Msa0150560 AT1G68410.2 30.182 275 148 13 120 373 51 302 6.01e-17 82.4
Msa0150560 AT4G33920.2 32.353 238 105 10 183 373 27 255 1.83e-16 79.7
Msa0150560 AT5G36250.1 27.619 315 151 11 80 326 41 346 3.89e-16 80.1
Msa0150560 AT1G79630.2 37.681 138 70 3 203 324 152 289 3.97e-16 80.1
Msa0150560 AT1G79630.7 37.681 138 70 3 203 324 152 289 3.97e-16 80.1
Msa0150560 AT1G79630.6 37.681 138 70 3 203 324 112 249 4.04e-16 79.7
Msa0150560 AT1G79630.3 37.681 138 70 3 203 324 112 249 4.04e-16 79.7
Msa0150560 AT1G79630.4 37.681 138 70 3 203 324 112 249 4.04e-16 79.7
Msa0150560 AT1G79630.5 37.681 138 70 3 203 324 112 249 4.04e-16 79.7
Msa0150560 AT1G79630.1 37.681 138 70 3 203 324 222 359 4.86e-16 80.1
Msa0150560 AT1G79630.8 37.681 138 70 3 203 324 218 355 5.52e-16 79.7
Msa0150560 AT4G33920.3 32.174 230 101 9 191 373 4 225 8.58e-16 77.0
Msa0150560 AT3G05640.2 39.130 138 68 4 203 324 172 309 9.05e-16 78.2
Msa0150560 AT3G05640.1 39.130 138 68 4 203 324 172 309 9.05e-16 78.2
Msa0150560 AT3G05640.3 39.130 138 68 4 203 324 172 309 9.05e-16 78.2
Msa0150560 AT3G51370.2 32.984 191 92 5 178 334 37 225 9.73e-16 77.4
Msa0150560 AT3G63340.2 37.415 147 85 4 234 377 340 482 1.12e-15 79.3
Msa0150560 AT1G16220.1 30.556 180 107 4 163 324 157 336 2.73e-15 77.8
Msa0150560 AT5G19280.1 29.078 282 164 11 114 377 318 581 4.91e-15 77.0
Msa0150560 AT2G05050.1 28.516 256 117 9 119 374 1 190 6.96e-14 70.1
Msa0150560 AT5G19280.2 28.082 292 164 12 114 377 318 591 1.34e-12 69.7
Msa0150560 AT1G22280.2 33.548 155 86 8 119 268 47 189 1.75e-11 63.5
Msa0150560 AT4G11040.2 36.691 139 68 6 107 241 79 201 7.25e-11 62.0

Find 105 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGGAGGAGGTGGAGAAGTA+TGG 0.235504 1_4:+12177511 Msa0150560:CDS
CTCTTTGTCACAGTGACTTC+AGG 0.244276 1_4:-12180049 None:intergenic
AATGCTTCAAAGGTCAAATT+AGG 0.290408 1_4:+12180158 Msa0150560:CDS
CTCAGGTGGCGGAGGCGTGT+AGG 0.323775 1_4:+12177467 Msa0150560:CDS
ATCAACTCATCAGGCCTGTT+TGG 0.331017 1_4:-12178504 None:intergenic
CTTGCAACCTCACGATCTAT+AGG 0.347379 1_4:+12178588 Msa0150560:CDS
TAGATCTTAATGTTCCTCTT+AGG 0.358874 1_4:-12180297 None:intergenic
ACCGGAGAAGATTGAAAATT+CGG 0.361358 1_4:+12177028 Msa0150560:CDS
AATGTTAACTTGTGCTCTTA+AGG 0.364179 1_4:+12180354 Msa0150560:three_prime_UTR
GGGAAGAGGTGGTGAAGCTT+TGG 0.383271 1_4:+12177705 Msa0150560:CDS
TATGAGAAATTCATCATCAT+TGG 0.394383 1_4:-12180074 None:intergenic
AGAGTGATGGAAGGGTGTTT+TGG 0.394683 1_4:+12177559 Msa0150560:CDS
TGGAATGGCCACCGTGTTCT+TGG 0.396208 1_4:+12178561 Msa0150560:CDS
CTGGTGGAAGAGTTATAAAC+TGG 0.397688 1_4:+12178541 Msa0150560:CDS
GGATTTGTCAAGTGATCATA+AGG 0.404582 1_4:+12177726 Msa0150560:CDS
GCAAAGATCCACGTCGGAAA+TGG 0.405131 1_4:+12177072 Msa0150560:CDS
GTGGAGAAGTATGGGAATGA+TGG 0.407900 1_4:+12177520 Msa0150560:CDS
TCTATTCTCATCAACTCATC+AGG 0.424557 1_4:-12178513 None:intergenic
TTGTTTGTACACAGCCAAAC+AGG 0.432694 1_4:+12178490 Msa0150560:intron
AGTTGTGGCGGTTGTTGTTA+AGG 0.447386 1_4:+12177639 Msa0150560:CDS
TAGGATTGTGGCGGAGGAGG+TGG 0.460409 1_4:+12177501 Msa0150560:CDS
TCATGGTGGTGCTCAGGTGG+CGG 0.466235 1_4:+12177456 Msa0150560:CDS
TGGCGGGTGATGCCGCGGTT+AGG 0.472797 1_4:+12177599 Msa0150560:CDS
TCAGGTGGCGGAGGCGTGTA+GGG 0.473874 1_4:+12177468 Msa0150560:CDS
CGGAGGAGGTGGAGAAGTAT+GGG 0.475067 1_4:+12177512 Msa0150560:CDS
TGGTGATTCTAGAGCCGTCT+TGG 0.475428 1_4:+12177684 Msa0150560:CDS
GATGCCGCGGTTAGGACCGT+GGG 0.477926 1_4:+12177607 Msa0150560:CDS
TGGAGAAGTATGGGAATGAT+GGG 0.480508 1_4:+12177521 Msa0150560:CDS
GATAGGGTGTAGGAAGGAAA+TGG 0.481470 1_4:+12177357 Msa0150560:CDS
AGCTTCGTAACGGCTCCAAC+CGG 0.483069 1_4:-12176994 None:intergenic
TTCGGTGTTTATGACGGTCA+TGG 0.483965 1_4:+12177439 Msa0150560:CDS
ACTAGCAAGTGATGGCTTGT+GGG 0.496581 1_4:+12180096 Msa0150560:CDS
CATGGTTCGGTGTCAACGAT+AGG 0.497255 1_4:+12177340 Msa0150560:CDS
TACTAGCAAGTGATGGCTTG+TGG 0.499391 1_4:+12180095 Msa0150560:CDS
GTCATAGTTGTTGACCTAAG+AGG 0.501868 1_4:+12180283 Msa0150560:CDS
TGGTGGTGCTCAGGTGGCGG+AGG 0.505538 1_4:+12177459 Msa0150560:CDS
ATTTGAGTGGGAGAGAGTGA+TGG 0.507256 1_4:+12177546 Msa0150560:CDS
GACACCGAACCATGCGATAG+AGG 0.509597 1_4:-12177331 None:intergenic
TGGTAAAATGGATAGGGAGG+TGG 0.509693 1_4:+12177579 Msa0150560:CDS
ACATAGGATTGTGGCGGAGG+AGG 0.510112 1_4:+12177498 Msa0150560:CDS
CGTGGGGTCTACTGCAGTTG+TGG 0.511701 1_4:+12177624 Msa0150560:CDS
TCTAGAGCCGTCTTGGGAAG+AGG 0.518511 1_4:+12177691 Msa0150560:CDS
GTTGTAAGAAAATGCTTCAA+AGG 0.519484 1_4:+12180148 Msa0150560:CDS
GGTGATTCTAGAGCCGTCTT+GGG 0.523572 1_4:+12177685 Msa0150560:CDS
ATTACATAGGATTGTGGCGG+AGG 0.524499 1_4:+12177495 Msa0150560:CDS
TAAAATGGATAGGGAGGTGG+CGG 0.527162 1_4:+12177582 Msa0150560:CDS
TGACGGTCATGGTGGTGCTC+AGG 0.528135 1_4:+12177450 Msa0150560:CDS
CGACGAGTGGATTCTCCGGT+TGG 0.528374 1_4:+12176979 Msa0150560:CDS
AATGGAGGATGCAGTGAGTG+TGG 0.528815 1_4:+12177375 Msa0150560:CDS
CGGTCATGGTGGTGCTCAGG+TGG 0.536858 1_4:+12177453 Msa0150560:CDS
TGATGCCGCGGTTAGGACCG+TGG 0.537553 1_4:+12177606 Msa0150560:CDS
TCGACGAGAGATTCATGAAT+CGG 0.538929 1_4:+12177128 Msa0150560:CDS
GTTAGCAACTTCTTCATCAT+CGG 0.543064 1_4:+12177167 Msa0150560:CDS
GGAGGTGGCGGGTGATGCCG+CGG 0.545853 1_4:+12177594 Msa0150560:CDS
GGAATCTTCTCTCCGACGAG+TGG 0.547552 1_4:+12176966 Msa0150560:CDS
ATGGTTCGGTGTCAACGATA+GGG 0.549454 1_4:+12177341 Msa0150560:CDS
AAACATGAAACGACACTCAT+CGG 0.550810 1_4:+12176945 Msa0150560:CDS
ACGACCTCTATCGCATGGTT+CGG 0.552860 1_4:+12177327 Msa0150560:CDS
GTCTGAGATAGCATTGGCAA+AGG 0.555565 1_4:+12180240 Msa0150560:CDS
CGACGACGGTAGTTTAGAAA+CGG 0.565353 1_4:+12177098 Msa0150560:CDS
GTCGGAAATGGCTCCGACGA+CGG 0.566809 1_4:+12177084 Msa0150560:CDS
GATCAGCCGTCCAAGCAAAA+CGG 0.569687 1_4:+12177198 Msa0150560:CDS
TCTCCGACGAGTGGATTCTC+CGG 0.570803 1_4:+12176975 Msa0150560:CDS
AAATTAGGAGAGTTTGTCAT+GGG 0.571829 1_4:+12180173 Msa0150560:CDS
TCTGAGATAGCATTGGCAAA+GGG 0.577103 1_4:+12180241 Msa0150560:CDS
GGAAGAGTTATAAACTGGAA+TGG 0.578243 1_4:+12178546 Msa0150560:CDS
CGGTGTCAACGATAGGGTGT+AGG 0.578460 1_4:+12177347 Msa0150560:CDS
TTGATGAGAATAGAAGAAGC+TGG 0.583873 1_4:+12178522 Msa0150560:CDS
TTTCTCATACTAGCAAGTGA+TGG 0.589407 1_4:+12180088 Msa0150560:CDS
GAGTGGGAGAGAGTGATGGA+AGG 0.592483 1_4:+12177550 Msa0150560:CDS
TGTGGCGGTTGTTGTTAAGG+AGG 0.594420 1_4:+12177642 Msa0150560:CDS
GGAATGATGGGGAATTTGAG+TGG 0.595276 1_4:+12177533 Msa0150560:CDS
AAAATGGATAGGGAGGTGGC+GGG 0.596854 1_4:+12177583 Msa0150560:CDS
AGGGTGTAGGAAGGAAATGG+AGG 0.598498 1_4:+12177360 Msa0150560:CDS
AGCAACTTCTTCATCATCGG+AGG 0.598936 1_4:+12177170 Msa0150560:CDS
ACTATTGTCTGAGATAGCAT+TGG 0.602546 1_4:+12180234 Msa0150560:CDS
AACATTCTCTAGCTTCGTAA+CGG 0.604268 1_4:-12177004 None:intergenic
CAAATTAGGAGAGTTTGTCA+TGG 0.604707 1_4:+12180172 Msa0150560:CDS
CGTCGGAGCCATTTCCGACG+TGG 0.626743 1_4:-12177080 None:intergenic
GGAGAGATTACATAGGATTG+TGG 0.628007 1_4:+12177489 Msa0150560:CDS
CGTTTCTAAACTACCGTCGT+CGG 0.628182 1_4:-12177097 None:intergenic
ATGAGAATAGAAGAAGCTGG+TGG 0.630044 1_4:+12178525 Msa0150560:CDS
CTAGCAAGTGATGGCTTGTG+GGG 0.633102 1_4:+12180097 Msa0150560:CDS
AGTGGGAGAGAGTGATGGAA+GGG 0.635076 1_4:+12177551 Msa0150560:CDS
CAACAACGACCTCTATCGCA+TGG 0.636873 1_4:+12177322 Msa0150560:CDS
CACAACTGCAGTAGACCCCA+CGG 0.637101 1_4:-12177623 None:intergenic
GAATGATGGGGAATTTGAGT+GGG 0.638753 1_4:+12177534 Msa0150560:CDS
GTCAACGATAGGGTGTAGGA+AGG 0.646408 1_4:+12177351 Msa0150560:CDS
TAACCAACCTATAGATCGTG+AGG 0.647099 1_4:-12178595 None:intergenic
GGGGTCTACTGCAGTTGTGG+CGG 0.647648 1_4:+12177627 Msa0150560:CDS
CGAAGCTAGAGAATGTTCAC+CGG 0.650904 1_4:+12177010 Msa0150560:CDS
TTCACCACCTCTTCCCAAGA+CGG 0.652418 1_4:-12177698 None:intergenic
GCCGTCCAAGCAAAACGGAG+AGG 0.660006 1_4:+12177203 Msa0150560:CDS
TTGCAAGAACACCAAGAACA+CGG 0.661960 1_4:-12178572 None:intergenic
CGTGTAGGGAGAGATTACAT+AGG 0.663499 1_4:+12177482 Msa0150560:CDS
GAGATTACATAGGATTGTGG+CGG 0.666518 1_4:+12177492 Msa0150560:CDS
AGAGCCGTCTTGGGAAGAGG+TGG 0.668426 1_4:+12177694 Msa0150560:CDS
CAACCGGAGAATCCACTCGT+CGG 0.678394 1_4:-12176978 None:intergenic
GGAGAAGTATGGGAATGATG+GGG 0.682396 1_4:+12177522 Msa0150560:CDS
GCGATCGTTGTTGCAAACTG+TGG 0.686693 1_4:+12177664 Msa0150560:CDS
AGACCCCACGGTCCTAACCG+CGG 0.694057 1_4:-12177611 None:intergenic
GGTGTTTATGACGGTCATGG+TGG 0.724654 1_4:+12177442 Msa0150560:CDS
ATGCCGCGGTTAGGACCGTG+GGG 0.731612 1_4:+12177608 Msa0150560:CDS
TGTCAAGCAAAGATCCACGT+CGG 0.732864 1_4:+12177066 Msa0150560:CDS
CAAGAACACCAAGAACACGG+TGG 0.824774 1_4:-12178569 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGTTATAAATTACAATT+AGG - chr1_4:12178043-12178062 None:intergenic 10.0%
!!! AAATATGATAAAACTTTTAA+TGG - chr1_4:12178801-12178820 None:intergenic 10.0%
!! AAACAATTATTATTAAGAAT+AGG - chr1_4:12179058-12179077 None:intergenic 10.0%
!!! TATTATTAGCTTATTATACA+CGG + chr1_4:12177231-12177250 Msa0150560:intron 15.0%
!!! AATATCTATAATTGTTTTTG+AGG + chr1_4:12177954-12177973 Msa0150560:intron 15.0%
!!! ATATCTATAATTGTTTTTGA+GGG + chr1_4:12177955-12177974 Msa0150560:intron 15.0%
!! TTAAATTCATTGAAGATTAT+TGG + chr1_4:12178999-12179018 Msa0150560:intron 15.0%
!!! AGCTTTTTTTTTTTTTTTGA+AGG - chr1_4:12179744-12179763 None:intergenic 15.0%
!!! TTTCATCTTTTATTATTTGC+AGG + chr1_4:12177285-12177304 Msa0150560:intron 20.0%
!!! ATTCCATAGTACTAATTTTT+AGG + chr1_4:12177780-12177799 Msa0150560:intron 20.0%
!!! TATCTATAATTGTTTTTGAG+GGG + chr1_4:12177956-12177975 Msa0150560:intron 20.0%
!! GAAAAATGATAGAAAATTTC+AGG - chr1_4:12178094-12178113 None:intergenic 20.0%
!!! CCAAAGTTTTAAATAAATAC+TGG - chr1_4:12178201-12178220 None:intergenic 20.0%
!!! CCAGTATTTATTTAAAACTT+TGG + chr1_4:12178198-12178217 Msa0150560:intron 20.0%
!!! TATCATACAATAGTTTTCTT+TGG - chr1_4:12178445-12178464 None:intergenic 20.0%
!!! AAACTATTGTATGATAATGA+AGG + chr1_4:12178449-12178468 Msa0150560:intron 20.0%
!!! TAATTAATCAATGGATTTGT+TGG + chr1_4:12178689-12178708 Msa0150560:intron 20.0%
!!! TGGTTAATCAATTTTTTTTG+AGG + chr1_4:12178709-12178728 Msa0150560:intron 20.0%
!!! GGTTAATCAATTTTTTTTGA+GGG + chr1_4:12178710-12178729 Msa0150560:intron 20.0%
!!! AAAAGTTAGAACATTTTGTA+AGG - chr1_4:12179529-12179548 None:intergenic 20.0%
!!! TGATGACTATATTAGTTTTA+AGG + chr1_4:12180329-12180348 Msa0150560:three_prime_UTR 20.0%
!!! GATGACTATATTAGTTTTAA+GGG + chr1_4:12180330-12180349 Msa0150560:three_prime_UTR 20.0%
! GTACCTAAAAATTAGTACTA+TGG - chr1_4:12177786-12177805 None:intergenic 25.0%
!! AAGAAAAATGGAAGTAGTTT+TGG + chr1_4:12177900-12177919 Msa0150560:intron 25.0%
! TGATCAACACATGATTAATA+AGG - chr1_4:12178241-12178260 None:intergenic 25.0%
!! ATGTGTTGATCAGTATTATT+TGG + chr1_4:12178249-12178268 Msa0150560:intron 25.0%
! ATTCATTGAAGATTATTGGA+CGG + chr1_4:12179003-12179022 Msa0150560:intron 25.0%
!!! TTCAACACTTCATTTTTTCT+CGG - chr1_4:12179605-12179624 None:intergenic 25.0%
! ATAGTTAGAATGTGTTGAAT+CGG - chr1_4:12179975-12179994 None:intergenic 25.0%
! TATGAGAAATTCATCATCAT+TGG - chr1_4:12180077-12180096 None:intergenic 25.0%
! ACAGATTTTACGATGAAAGA+TGG + chr1_4:12177400-12177419 Msa0150560:CDS 30.0%
!!! GATTTTTTCGGTGTTTATGA+CGG + chr1_4:12177433-12177452 Msa0150560:CDS 30.0%
!!! GTGTTTTGGTAAAATGGATA+GGG + chr1_4:12177573-12177592 Msa0150560:CDS 30.0%
!! TAATTTTGAAGACTAGTGTC+AGG + chr1_4:12178294-12178313 Msa0150560:intron 30.0%
! TAGTTGCTAGCTTATGATAA+TGG + chr1_4:12178652-12178671 Msa0150560:intron 30.0%
!! TAATGGCAAGAGTTTTTCAA+TGG - chr1_4:12178784-12178803 None:intergenic 30.0%
GCTTAAATTCTCTCATAAAG+AGG + chr1_4:12178862-12178881 Msa0150560:intron 30.0%
GATCATATACACAAAACATG+TGG - chr1_4:12178930-12178949 None:intergenic 30.0%
AATCCCACATAATCAAAGTT+TGG + chr1_4:12179182-12179201 Msa0150560:intron 30.0%
ATCCCACATAATCAAAGTTT+GGG + chr1_4:12179183-12179202 Msa0150560:intron 30.0%
TGATCAAGTATTTAACGAGT+CGG - chr1_4:12179412-12179431 None:intergenic 30.0%
!!! AACTTTTAGTTTATGAGCTC+TGG + chr1_4:12179542-12179561 Msa0150560:intron 30.0%
TCGAGTTTAGTTAAAAACTC+AGG - chr1_4:12179648-12179667 None:intergenic 30.0%
! GATGTTTAACATTTTGAGCA+AGG - chr1_4:12179789-12179808 None:intergenic 30.0%
!! TCAGGTTTTGATATCACATA+TGG - chr1_4:12180034-12180053 None:intergenic 30.0%
!! TGAAGCATTTTCTTACAACT+TGG - chr1_4:12180147-12180166 None:intergenic 30.0%
GTTGTAAGAAAATGCTTCAA+AGG + chr1_4:12180148-12180167 Msa0150560:CDS 30.0%
AATGCTTCAAAGGTCAAATT+AGG + chr1_4:12180158-12180177 Msa0150560:CDS 30.0%
AAATTAGGAGAGTTTGTCAT+GGG + chr1_4:12180173-12180192 Msa0150560:CDS 30.0%
TAGATCTTAATGTTCCTCTT+AGG - chr1_4:12180300-12180319 None:intergenic 30.0%
AAACATGAAACGACACTCAT+CGG + chr1_4:12176945-12176964 Msa0150560:CDS 35.0%
! AACATTCTCTAGCTTCGTAA+CGG - chr1_4:12177007-12177026 None:intergenic 35.0%
ACCGGAGAAGATTGAAAATT+CGG + chr1_4:12177028-12177047 Msa0150560:CDS 35.0%
! TCCGAATTTTCAATCTTCTC+CGG - chr1_4:12177032-12177051 None:intergenic 35.0%
GTTAGCAACTTCTTCATCAT+CGG + chr1_4:12177167-12177186 Msa0150560:CDS 35.0%
TTATACACGGAAAATCCTTG+AGG + chr1_4:12177244-12177263 Msa0150560:intron 35.0%
!!! GGAGAGAAGTGTGATTTTTT+CGG + chr1_4:12177421-12177440 Msa0150560:CDS 35.0%
!!! GGTGTTTTGGTAAAATGGAT+AGG + chr1_4:12177572-12177591 Msa0150560:CDS 35.0%
! TTTTGGTAAAATGGATAGGG+AGG + chr1_4:12177576-12177595 Msa0150560:CDS 35.0%
GGATTTGTCAAGTGATCATA+AGG + chr1_4:12177726-12177745 Msa0150560:CDS 35.0%
GATCAATCTCAAACAGATCT+TGG + chr1_4:12177858-12177877 Msa0150560:intron 35.0%
AAAGTTTAGAAGTCTCTGCA+TGG - chr1_4:12178009-12178028 None:intergenic 35.0%
TCTATTCTCATCAACTCATC+AGG - chr1_4:12178516-12178535 None:intergenic 35.0%
TTGATGAGAATAGAAGAAGC+TGG + chr1_4:12178522-12178541 Msa0150560:CDS 35.0%
GGAAGAGTTATAAACTGGAA+TGG + chr1_4:12178546-12178565 Msa0150560:CDS 35.0%
AAGCAATGTGTCATCTTGAT+TGG - chr1_4:12178846-12178865 None:intergenic 35.0%
!! CGTTGATTTCAAAGAGCTTA+AGG + chr1_4:12179141-12179160 Msa0150560:intron 35.0%
CACCCAAACTTTGATTATGT+GGG - chr1_4:12179188-12179207 None:intergenic 35.0%
ACACCCAAACTTTGATTATG+TGG - chr1_4:12179189-12179208 None:intergenic 35.0%
GATCAAGTATTTAACGAGTC+GGG - chr1_4:12179411-12179430 None:intergenic 35.0%
TATTGTAACTTGATGCATGC+AGG + chr1_4:12179992-12180011 Msa0150560:intron 35.0%
TTTCTCATACTAGCAAGTGA+TGG + chr1_4:12180088-12180107 Msa0150560:CDS 35.0%
CAAATTAGGAGAGTTTGTCA+TGG + chr1_4:12180172-12180191 Msa0150560:CDS 35.0%
! ACTATTGTCTGAGATAGCAT+TGG + chr1_4:12180234-12180253 Msa0150560:CDS 35.0%
TCGACGAGAGATTCATGAAT+CGG + chr1_4:12177128-12177147 Msa0150560:CDS 40.0%
GGAGAGATTACATAGGATTG+TGG + chr1_4:12177489-12177508 Msa0150560:CDS 40.0%
GAGATTACATAGGATTGTGG+CGG + chr1_4:12177492-12177511 Msa0150560:CDS 40.0%
! TGGAGAAGTATGGGAATGAT+GGG + chr1_4:12177521-12177540 Msa0150560:CDS 40.0%
! GAATGATGGGGAATTTGAGT+GGG + chr1_4:12177534-12177553 Msa0150560:CDS 40.0%
!!! GGAAGGGTGTTTTGGTAAAA+TGG + chr1_4:12177567-12177586 Msa0150560:CDS 40.0%
TTGTTTGTACACAGCCAAAC+AGG + chr1_4:12178490-12178509 Msa0150560:intron 40.0%
ATGAGAATAGAAGAAGCTGG+TGG + chr1_4:12178525-12178544 Msa0150560:CDS 40.0%
CTGGTGGAAGAGTTATAAAC+TGG + chr1_4:12178541-12178560 Msa0150560:CDS 40.0%
TTGCAAGAACACCAAGAACA+CGG - chr1_4:12178575-12178594 None:intergenic 40.0%
TAACCAACCTATAGATCGTG+AGG - chr1_4:12178598-12178617 None:intergenic 40.0%
! TTGTTTCTTGTGTGTGCCTA+TGG + chr1_4:12179072-12179091 Msa0150560:intron 40.0%
ATTTCCACGTGTTTGACCAT+AGG - chr1_4:12179091-12179110 None:intergenic 40.0%
! CAAAGAGCTTAAGGTATCCT+TGG + chr1_4:12179150-12179169 Msa0150560:intron 40.0%
! GTGGGATTTACAGTTTTCCA+AGG - chr1_4:12179170-12179189 None:intergenic 40.0%
!! TCTGAGATAGCATTGGCAAA+GGG + chr1_4:12180241-12180260 Msa0150560:CDS 40.0%
GTCATAGTTGTTGACCTAAG+AGG + chr1_4:12180283-12180302 Msa0150560:CDS 40.0%
CGAAGCTAGAGAATGTTCAC+CGG + chr1_4:12177010-12177029 Msa0150560:CDS 45.0%
TGTCAAGCAAAGATCCACGT+CGG + chr1_4:12177066-12177085 Msa0150560:CDS 45.0%
CGTTTCTAAACTACCGTCGT+CGG - chr1_4:12177100-12177119 None:intergenic 45.0%
CGACGACGGTAGTTTAGAAA+CGG + chr1_4:12177098-12177117 Msa0150560:CDS 45.0%
AGCAACTTCTTCATCATCGG+AGG + chr1_4:12177170-12177189 Msa0150560:CDS 45.0%
! GTTTACCTCTCCGTTTTGCT+TGG - chr1_4:12177211-12177230 None:intergenic 45.0%
TATGAGATGCACTGTCCTCA+AGG - chr1_4:12177262-12177281 None:intergenic 45.0%
!! ATGGTTCGGTGTCAACGATA+GGG + chr1_4:12177341-12177360 Msa0150560:CDS 45.0%
GATAGGGTGTAGGAAGGAAA+TGG + chr1_4:12177357-12177376 Msa0150560:CDS 45.0%
!! TTCGGTGTTTATGACGGTCA+TGG + chr1_4:12177439-12177458 Msa0150560:CDS 45.0%
CGTGTAGGGAGAGATTACAT+AGG + chr1_4:12177482-12177501 Msa0150560:CDS 45.0%
ATTACATAGGATTGTGGCGG+AGG + chr1_4:12177495-12177514 Msa0150560:CDS 45.0%
! GTGGAGAAGTATGGGAATGA+TGG + chr1_4:12177520-12177539 Msa0150560:CDS 45.0%
! GGAGAAGTATGGGAATGATG+GGG + chr1_4:12177522-12177541 Msa0150560:CDS 45.0%
! GGAATGATGGGGAATTTGAG+TGG + chr1_4:12177533-12177552 Msa0150560:CDS 45.0%
ATTTGAGTGGGAGAGAGTGA+TGG + chr1_4:12177546-12177565 Msa0150560:CDS 45.0%
!!! AGAGTGATGGAAGGGTGTTT+TGG + chr1_4:12177559-12177578 Msa0150560:CDS 45.0%
TGGTAAAATGGATAGGGAGG+TGG + chr1_4:12177579-12177598 Msa0150560:CDS 45.0%
TAAAATGGATAGGGAGGTGG+CGG + chr1_4:12177582-12177601 Msa0150560:CDS 45.0%
! AGTTGTGGCGGTTGTTGTTA+AGG + chr1_4:12177639-12177658 Msa0150560:CDS 45.0%
ATCAACTCATCAGGCCTGTT+TGG - chr1_4:12178507-12178526 None:intergenic 45.0%
CTTGCAACCTCACGATCTAT+AGG + chr1_4:12178588-12178607 Msa0150560:CDS 45.0%
CAACCTCACGATCTATAGGT+TGG + chr1_4:12178592-12178611 Msa0150560:intron 45.0%
CTCTTTGTCACAGTGACTTC+AGG - chr1_4:12180052-12180071 None:intergenic 45.0%
TACTAGCAAGTGATGGCTTG+TGG + chr1_4:12180095-12180114 Msa0150560:CDS 45.0%
! ACTAGCAAGTGATGGCTTGT+GGG + chr1_4:12180096-12180115 Msa0150560:CDS 45.0%
!! GTCTGAGATAGCATTGGCAA+AGG + chr1_4:12180240-12180259 Msa0150560:CDS 45.0%
!! AATATATATATAAAGAAAAA+TGG + chr1_4:12177888-12177907 Msa0150560:intron 5.0%
!! ATAATTAATTAATTAATCAA+TGG + chr1_4:12178680-12178699 Msa0150560:intron 5.0%
!!! TTTTCAATTTTAAAATTATT+TGG + chr1_4:12178957-12178976 Msa0150560:intron 5.0%
GCAAAGATCCACGTCGGAAA+TGG + chr1_4:12177072-12177091 Msa0150560:CDS 50.0%
GATCAGCCGTCCAAGCAAAA+CGG + chr1_4:12177198-12177217 Msa0150560:CDS 50.0%
! ACCTCTCCGTTTTGCTTGGA+CGG - chr1_4:12177207-12177226 None:intergenic 50.0%
CAACAACGACCTCTATCGCA+TGG + chr1_4:12177322-12177341 Msa0150560:CDS 50.0%
ACGACCTCTATCGCATGGTT+CGG + chr1_4:12177327-12177346 Msa0150560:CDS 50.0%
!! CATGGTTCGGTGTCAACGAT+AGG + chr1_4:12177340-12177359 Msa0150560:CDS 50.0%
GTCAACGATAGGGTGTAGGA+AGG + chr1_4:12177351-12177370 Msa0150560:CDS 50.0%
AGGGTGTAGGAAGGAAATGG+AGG + chr1_4:12177360-12177379 Msa0150560:CDS 50.0%
AATGGAGGATGCAGTGAGTG+TGG + chr1_4:12177375-12177394 Msa0150560:CDS 50.0%
GGTGTTTATGACGGTCATGG+TGG + chr1_4:12177442-12177461 Msa0150560:CDS 50.0%
! AGTGGGAGAGAGTGATGGAA+GGG + chr1_4:12177551-12177570 Msa0150560:CDS 50.0%
AAAATGGATAGGGAGGTGGC+GGG + chr1_4:12177583-12177602 Msa0150560:CDS 50.0%
! TGTGGCGGTTGTTGTTAAGG+AGG + chr1_4:12177642-12177661 Msa0150560:CDS 50.0%
GCGATCGTTGTTGCAAACTG+TGG + chr1_4:12177664-12177683 Msa0150560:CDS 50.0%
!! TGGTGATTCTAGAGCCGTCT+TGG + chr1_4:12177684-12177703 Msa0150560:CDS 50.0%
!! GGTGATTCTAGAGCCGTCTT+GGG + chr1_4:12177685-12177704 Msa0150560:CDS 50.0%
TTCACCACCTCTTCCCAAGA+CGG - chr1_4:12177701-12177720 None:intergenic 50.0%
CAAGAACACCAAGAACACGG+TGG - chr1_4:12178572-12178591 None:intergenic 50.0%
TGTGCCTATGGTCAAACACG+TGG + chr1_4:12179084-12179103 Msa0150560:intron 50.0%
! CTAGCAAGTGATGGCTTGTG+GGG + chr1_4:12180097-12180116 Msa0150560:CDS 50.0%
GGAATCTTCTCTCCGACGAG+TGG + chr1_4:12176966-12176985 Msa0150560:CDS 55.0%
! TCTCCGACGAGTGGATTCTC+CGG + chr1_4:12176975-12176994 Msa0150560:CDS 55.0%
CAACCGGAGAATCCACTCGT+CGG - chr1_4:12176981-12177000 None:intergenic 55.0%
AGCTTCGTAACGGCTCCAAC+CGG - chr1_4:12176997-12177016 None:intergenic 55.0%
GACACCGAACCATGCGATAG+AGG - chr1_4:12177334-12177353 None:intergenic 55.0%
! CGGTGTCAACGATAGGGTGT+AGG + chr1_4:12177347-12177366 Msa0150560:CDS 55.0%
! ACATAGGATTGTGGCGGAGG+AGG + chr1_4:12177498-12177517 Msa0150560:CDS 55.0%
! CGGAGGAGGTGGAGAAGTAT+GGG + chr1_4:12177512-12177531 Msa0150560:CDS 55.0%
! GAGTGGGAGAGAGTGATGGA+AGG + chr1_4:12177550-12177569 Msa0150560:CDS 55.0%
CACAACTGCAGTAGACCCCA+CGG - chr1_4:12177626-12177645 None:intergenic 55.0%
! TCTAGAGCCGTCTTGGGAAG+AGG + chr1_4:12177691-12177710 Msa0150560:CDS 55.0%
GGGAAGAGGTGGTGAAGCTT+TGG + chr1_4:12177705-12177724 Msa0150560:CDS 55.0%
TGGAATGGCCACCGTGTTCT+TGG + chr1_4:12178561-12178580 Msa0150560:CDS 55.0%
! CGACGAGTGGATTCTCCGGT+TGG + chr1_4:12176979-12176998 Msa0150560:CDS 60.0%
GTCGGAAATGGCTCCGACGA+CGG + chr1_4:12177084-12177103 Msa0150560:CDS 60.0%
GCCGTCCAAGCAAAACGGAG+AGG + chr1_4:12177203-12177222 Msa0150560:CDS 60.0%
! TGACGGTCATGGTGGTGCTC+AGG + chr1_4:12177450-12177469 Msa0150560:CDS 60.0%
! TCATGGTGGTGCTCAGGTGG+CGG + chr1_4:12177456-12177475 Msa0150560:CDS 60.0%
! TAGGATTGTGGCGGAGGAGG+TGG + chr1_4:12177501-12177520 Msa0150560:CDS 60.0%
GCGGAGGAGGTGGAGAAGTA+TGG + chr1_4:12177511-12177530 Msa0150560:CDS 60.0%
CGTGGGGTCTACTGCAGTTG+TGG + chr1_4:12177624-12177643 Msa0150560:CDS 60.0%
GGGGTCTACTGCAGTTGTGG+CGG + chr1_4:12177627-12177646 Msa0150560:CDS 60.0%
AGAGCCGTCTTGGGAAGAGG+TGG + chr1_4:12177694-12177713 Msa0150560:CDS 60.0%
CGTCGGAGCCATTTCCGACG+TGG - chr1_4:12177083-12177102 None:intergenic 65.0%
! CGGTCATGGTGGTGCTCAGG+TGG + chr1_4:12177453-12177472 Msa0150560:CDS 65.0%
!! TCAGGTGGCGGAGGCGTGTA+GGG + chr1_4:12177468-12177487 Msa0150560:CDS 65.0%
TGATGCCGCGGTTAGGACCG+TGG + chr1_4:12177606-12177625 Msa0150560:CDS 65.0%
GATGCCGCGGTTAGGACCGT+GGG + chr1_4:12177607-12177626 Msa0150560:CDS 65.0%
ATGCCGCGGTTAGGACCGTG+GGG + chr1_4:12177608-12177627 Msa0150560:CDS 65.0%
AGACCCCACGGTCCTAACCG+CGG - chr1_4:12177614-12177633 None:intergenic 65.0%
! TGGTGGTGCTCAGGTGGCGG+AGG + chr1_4:12177459-12177478 Msa0150560:CDS 70.0%
!! CTCAGGTGGCGGAGGCGTGT+AGG + chr1_4:12177467-12177486 Msa0150560:CDS 70.0%
! TGGCGGGTGATGCCGCGGTT+AGG + chr1_4:12177599-12177618 Msa0150560:CDS 70.0%
!! GGAGGTGGCGGGTGATGCCG+CGG + chr1_4:12177594-12177613 Msa0150560:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 12176940 12180373 12176940 ID=Msa0150560;Name=Msa0150560
chr1_4 mRNA 12176940 12180373 12176940 ID=Msa0150560-mRNA-1;Parent=Msa0150560;Name=Msa0150560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.5|1|1|1|4|49|380
chr1_4 exon 12176940 12177224 12176940 ID=Msa0150560-mRNA-1:exon:4946;Parent=Msa0150560-mRNA-1
chr1_4 exon 12177307 12177747 12177307 ID=Msa0150560-mRNA-1:exon:4947;Parent=Msa0150560-mRNA-1
chr1_4 exon 12178504 12178609 12178504 ID=Msa0150560-mRNA-1:exon:4948;Parent=Msa0150560-mRNA-1
chr1_4 exon 12180014 12180373 12180014 ID=Msa0150560-mRNA-1:exon:4949;Parent=Msa0150560-mRNA-1
chr1_4 CDS 12176940 12177224 12176940 ID=Msa0150560-mRNA-1:cds;Parent=Msa0150560-mRNA-1
chr1_4 CDS 12177307 12177747 12177307 ID=Msa0150560-mRNA-1:cds;Parent=Msa0150560-mRNA-1
chr1_4 CDS 12178504 12178609 12178504 ID=Msa0150560-mRNA-1:cds;Parent=Msa0150560-mRNA-1
chr1_4 CDS 12180014 12180324 12180014 ID=Msa0150560-mRNA-1:cds;Parent=Msa0150560-mRNA-1
chr1_4 three_prime_UTR 12180325 12180373 12180325 ID=Msa0150560-mRNA-1:three_prime_utr;Parent=Msa0150560-mRNA-1
Gene Sequence

>Msa0150560

ATGAAAAACATGAAACGACACTCATCGGAATCTTCTCTCCGACGAGTGGATTCTCCGGTTGGAGCCGTTACGAAGCTAGAGAATGTTCACCGGAGAAGATTGAAAATTCGGAGAATGAAGTATAGTTGTCAAGCAAAGATCCACGTCGGAAATGGCTCCGACGACGGTAGTTTAGAAACGGAGAATGCTCGACGAGAGATTCATGAATCGGTTGAGATATCGTTGTCGTTAGCAACTTCTTCATCATCGGAGGAAGATGATCAGCCGTCCAAGCAAAACGGAGAGGTGAAGCATTATCAACAACAACGACCTCTATCGCATGGTTCGGTGTCAACGATAGGGTGTAGGAAGGAAATGGAGGATGCAGTGAGTGTGGAGACAGATTTTACGATGAAAGATGGAGAGAAGTGTGATTTTTTCGGTGTTTATGACGGTCATGGTGGTGCTCAGGTGGCGGAGGCGTGTAGGGAGAGATTACATAGGATTGTGGCGGAGGAGGTGGAGAAGTATGGGAATGATGGGGAATTTGAGTGGGAGAGAGTGATGGAAGGGTGTTTTGGTAAAATGGATAGGGAGGTGGCGGGTGATGCCGCGGTTAGGACCGTGGGGTCTACTGCAGTTGTGGCGGTTGTTGTTAAGGAGGCGATCGTTGTTGCAAACTGTGGTGATTCTAGAGCCGTCTTGGGAAGAGGTGGTGAAGCTTTGGATTTGTCAAGTGATCATAAGCCAAACAGGCCTGATGAGTTGATGAGAATAGAAGAAGCTGGTGGAAGAGTTATAAACTGGAATGGCCACCGTGTTCTTGGTGTTCTTGCAACCTCACGATCTATAGGAGATCAATATCTTCGACCATATGTGATATCAAAACCTGAAGTCACTGTGACAAAGAGAACCAATGATGATGAATTTCTCATACTAGCAAGTGATGGCTTGTGGGGTGTAATGTCTAGTGAAATTGCATGCCAAGTTGTAAGAAAATGCTTCAAAGGTCAAATTAGGAGAGTTTGTCATGGGAATGAGAATCAAAGTAATCGTGCTGCTGAAGCTGCAACACTATTGTCTGAGATAGCATTGGCAAAGGGTAGCAGAGACAATACAAGTGTCATAGTTGTTGACCTAAGAGGAACATTAAGATCTAGTTGA
Protein sequence

>Msa0150560

MKNMKRHSSESSLRRVDSPVGAVTKLENVHRRRLKIRRMKYSCQAKIHVGNGSDDGSLETENARREIHESVEISLSLATSSSSEEDDQPSKQNGEVKHYQQQRPLSHGSVSTIGCRKEMEDAVSVETDFTMKDGEKCDFFGVYDGHGGAQVAEACRERLHRIVAEEVEKYGNDGEFEWERVMEGCFGKMDREVAGDAAVRTVGSTAVVAVVVKEAIVVANCGDSRAVLGRGGEALDLSSDHKPNRPDELMRIEEAGGRVINWNGHRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRTNDDEFLILASDGLWGVMSSEIACQVVRKCFKGQIRRVCHGNENQSNRAAEAATLLSEIALAKGSRDNTSVIVVDLRGTLRSS*