AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104850 MtrunA17_Chr1g0159481 100.000 215 0 0 1 215 1 215 4.59e-161 443
Msa0104850 MtrunA17_Chr8g0384311 85.990 207 28 1 7 213 3 208 3.02e-133 372
Msa0104850 MtrunA17_Chr3g0130271 83.092 207 33 2 8 213 3 208 4.69e-126 354
Msa0104850 MtrunA17_Chr7g0265001 67.822 202 64 1 14 214 13 214 3.70e-104 299
Msa0104850 MtrunA17_Chr1g0180291 66.500 200 67 0 14 213 11 210 3.07e-102 294
Msa0104850 MtrunA17_Chr1g0197331 61.682 214 78 2 3 214 1 212 7.49e-92 268
Msa0104850 MtrunA17_Chr7g0250531 50.739 203 94 5 13 214 4 201 6.11e-59 184
Msa0104850 MtrunA17_Chr8g0335471 50.246 203 96 4 13 214 4 202 4.14e-58 182
Msa0104850 MtrunA17_Chr2g0276931 49.261 203 96 5 13 213 5 202 2.55e-57 180
Msa0104850 MtrunA17_Chr4g0055651 48.768 203 98 4 13 214 4 201 3.70e-57 179
Msa0104850 MtrunA17_Chr1g0182321 44.749 219 108 7 3 213 1 214 1.08e-54 174
Msa0104850 MtrunA17_Chr1g0182301 44.292 219 109 7 3 213 1 214 3.54e-54 172
Msa0104850 MtrunA17_Chr1g0212521 45.933 209 100 7 13 213 11 214 3.19e-53 170
Msa0104850 MtrunA17_Chr4g0030911 45.894 207 102 7 13 213 11 213 1.70e-52 168
Msa0104850 MtrunA17_Chr7g0263071 49.438 178 82 5 13 184 11 186 6.72e-52 166
Msa0104850 MtrunA17_Chr2g0327911 43.350 203 112 3 13 213 11 212 2.39e-51 165
Msa0104850 MtrunA17_Chr6g0458081 43.128 211 108 5 14 214 3 211 3.79e-51 164
Msa0104850 MtrunA17_Chr2g0290891 42.925 212 107 6 14 214 3 211 5.27e-49 159
Msa0104850 MtrunA17_Chr6g0482721 49.708 171 83 3 15 184 10 178 1.84e-48 158
Msa0104850 MtrunA17_Chr8g0349681 42.647 204 110 4 16 214 383 584 3.12e-48 166
Msa0104850 MtrunA17_Chr8g0349681 44.134 179 91 4 1 172 153 329 2.71e-42 150
Msa0104850 MtrunA17_Chr8g0349681 44.099 161 87 3 16 175 12 170 1.23e-40 145
Msa0104850 MtrunA17_Chr2g0325091 45.455 209 105 6 13 214 7 213 5.18e-48 156
Msa0104850 MtrunA17_Chr2g0283131 40.553 217 105 6 13 214 9 216 3.90e-47 154
Msa0104850 MtrunA17_Chr4g0046261 40.092 217 106 6 13 214 9 216 9.58e-47 153
Msa0104850 MtrunA17_Chr8g0349711 47.468 158 80 3 16 172 5 160 1.02e-46 153
Msa0104850 MtrunA17_Chr2g0319951 48.214 168 84 3 13 179 9 174 3.01e-46 152
Msa0104850 MtrunA17_Chr8g0346421 46.429 168 87 3 13 179 22 187 5.56e-46 152
Msa0104850 MtrunA17_Chr2g0276941 39.810 211 116 5 13 214 11 219 9.82e-46 151
Msa0104850 MtrunA17_Chr3g0112681 39.524 210 117 5 13 214 8 215 1.19e-45 150
Msa0104850 MtrunA17_Chr4g0040781 42.932 191 95 4 13 191 9 197 1.53e-45 150
Msa0104850 MtrunA17_Chr7g0275991 42.051 195 110 3 13 206 16 208 2.86e-45 150
Msa0104850 MtrunA17_Chr2g0315551 45.833 168 88 3 13 179 9 174 4.10e-45 149
Msa0104850 MtrunA17_Chr7g0234201 42.661 218 92 7 16 214 12 215 4.27e-45 149
Msa0104850 MtrunA17_Chr8g0381841 38.679 212 116 5 14 213 14 223 5.55e-45 149
Msa0104850 MtrunA17_Chr4g0032201 38.278 209 120 5 13 214 8 214 6.72e-45 149
Msa0104850 MtrunA17_Chr3g0123821 37.264 212 120 5 13 213 12 221 1.75e-44 148
Msa0104850 MtrunA17_Chr8g0351861 41.667 216 108 6 15 214 14 227 3.85e-44 147
Msa0104850 MtrunA17_Chr1g0189361 41.026 195 103 4 15 208 12 195 1.55e-43 145
Msa0104850 MtrunA17_Chr8g0392931 47.059 170 87 3 13 181 10 177 1.91e-42 142
Msa0104850 MtrunA17_Chr7g0231131 42.262 168 94 3 13 179 11 176 5.07e-42 141
Msa0104850 MtrunA17_Chr1g0174281 37.209 215 118 7 13 213 11 222 7.49e-41 138
Msa0104850 MtrunA17_Chr7g0214241 42.353 170 95 3 16 184 14 181 1.33e-38 132
Msa0104850 MtrunA17_Chr5g0433561 37.563 197 114 6 19 214 12 200 8.99e-37 127
Msa0104850 MtrunA17_Chr3g0109721 36.041 197 117 6 19 214 12 200 1.54e-35 124
Msa0104850 MtrunA17_Chr1g0199331 40.237 169 96 5 19 185 33 198 2.86e-35 123
Msa0104850 MtrunA17_Chr8g0390561 38.272 162 97 3 19 179 11 170 6.44e-34 120
Msa0104850 MtrunA17_Chr4g0055081 38.994 159 94 3 18 175 10 166 5.31e-33 118
Msa0104850 MtrunA17_Chr8g0382221 37.736 159 96 3 18 175 10 166 3.00e-32 116
Msa0104850 MtrunA17_Chr5g0400131 38.365 159 95 3 18 175 10 166 3.92e-32 115
Msa0104850 MtrunA17_Chr3g0123971 37.278 169 103 3 18 185 10 176 3.99e-32 115
Msa0104850 MtrunA17_Chr4g0034871 36.842 171 100 5 17 180 8 177 5.61e-29 107
Msa0104850 MtrunA17_Chr8g0383261 39.444 180 94 7 1 172 1 173 7.09e-29 107
Msa0104850 MtrunA17_Chr2g0331691 34.653 202 106 6 17 211 10 192 6.64e-28 105
Msa0104850 MtrunA17_Chr4g0004661 33.663 202 108 6 17 211 64 246 7.39e-27 103
Msa0104850 MtrunA17_Chr1g0201121 37.423 163 94 5 17 172 8 169 1.52e-26 101
Msa0104850 MtrunA17_Chr6g0466301 38.650 163 92 6 17 172 8 169 2.13e-26 100
Msa0104850 MtrunA17_Chr6g0465491 38.650 163 92 6 17 172 8 169 2.13e-26 100
Msa0104850 MtrunA17_Chr3g0138121 36.813 182 106 7 7 185 2 177 1.68e-25 99.0
Msa0104850 MtrunA17_Chr3g0138101 36.813 182 106 7 7 185 2 177 1.80e-25 99.0
Msa0104850 MtrunA17_Chr3g0138111 36.813 182 106 7 7 185 2 177 2.21e-25 98.6
Msa0104850 MtrunA17_Chr2g0325101 31.250 176 106 5 17 180 6 178 1.85e-23 93.2
Msa0104850 MtrunA17_Chr3g0117931 29.064 203 126 6 8 198 2 198 5.35e-23 92.0
Msa0104850 MtrunA17_Chr6g0486041 30.726 179 109 5 17 183 6 181 5.58e-23 92.0
Msa0104850 MtrunA17_Chr4g0037021 29.609 179 111 5 17 183 6 181 2.80e-22 90.1
Msa0104850 MtrunA17_Chr8g0371501 31.250 176 106 5 17 180 6 178 3.19e-21 87.0
Msa0104850 MtrunA17_Chr5g0405791 30.682 176 107 5 17 180 6 178 7.54e-21 86.3
Msa0104850 MtrunA17_Chr4g0046211 32.258 124 80 3 17 139 6 126 2.06e-17 75.9
Msa0104850 MtrunA17_Chr6g0466431 36.000 100 53 3 17 115 8 97 2.25e-14 66.6
Msa0104850 MtrunA17_Chr6g0465611 36.000 100 53 3 17 115 8 97 2.25e-14 66.6
Msa0104850 MtrunA17_Chr6g0466161 36.641 131 76 5 48 172 22 151 4.23e-14 68.6
Msa0104850 MtrunA17_Chr6g0465471 36.641 131 76 5 48 172 22 151 4.68e-14 68.2
Msa0104850 MtrunA17_Chr5g0434561 31.034 174 97 9 14 176 16 177 1.71e-12 63.5
Msa0104850 MtrunA17_Chr8g0383221 30.675 163 83 6 19 153 23 183 3.80e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104850 AT1G43890.3 85.354 198 29 0 7 204 3 200 3.62e-126 355
Msa0104850 AT1G43890.1 85.354 198 29 0 7 204 3 200 3.62e-126 355
Msa0104850 AT1G43890.2 85.354 198 29 0 7 204 3 200 3.62e-126 355
Msa0104850 AT5G03530.2 67.308 208 68 0 7 214 3 210 9.09e-110 313
Msa0104850 AT5G03530.1 67.308 208 68 0 7 214 3 210 9.09e-110 313
Msa0104850 AT3G09910.3 63.942 208 69 2 7 214 3 204 1.10e-89 263
Msa0104850 AT3G09910.1 63.942 208 69 2 7 214 3 204 1.10e-89 263
Msa0104850 AT3G09910.2 63.942 208 69 2 7 214 3 204 1.10e-89 263
Msa0104850 AT3G09910.5 66.111 180 58 1 7 183 3 182 5.20e-81 240
Msa0104850 AT3G09910.4 66.111 180 58 1 7 183 3 182 5.20e-81 240
Msa0104850 AT1G02130.1 49.261 203 98 4 13 214 4 202 2.25e-57 180
Msa0104850 AT5G47200.1 48.768 203 98 5 13 214 4 201 1.07e-56 179
Msa0104850 AT4G17530.1 48.768 203 98 5 13 214 4 201 1.65e-56 178
Msa0104850 AT4G35860.1 48.925 186 88 4 14 194 3 186 5.46e-54 172
Msa0104850 AT3G53610.2 46.860 207 100 7 13 213 11 213 1.47e-53 171
Msa0104850 AT3G53610.3 46.860 207 100 7 13 213 11 213 1.47e-53 171
Msa0104850 AT3G53610.1 46.860 207 100 7 13 213 11 213 1.47e-53 171
Msa0104850 AT5G59840.1 46.377 207 101 7 13 213 11 213 2.94e-53 170
Msa0104850 AT5G03520.1 45.000 220 109 6 3 215 1 215 6.85e-53 169
Msa0104850 AT3G09900.1 47.642 212 99 7 12 215 10 217 7.12e-53 169
Msa0104850 AT3G11730.1 45.545 202 107 3 13 213 4 203 2.71e-52 167
Msa0104850 AT3G46060.2 45.894 207 102 7 13 213 11 213 5.69e-52 167
Msa0104850 AT3G46060.3 45.894 207 102 7 13 213 11 213 5.69e-52 167
Msa0104850 AT3G46060.1 45.894 207 102 7 13 213 11 213 5.69e-52 167
Msa0104850 AT4G17160.1 42.647 204 111 4 14 213 3 204 1.70e-50 163
Msa0104850 AT4G39990.1 41.905 210 110 5 15 214 15 222 3.47e-50 163
Msa0104850 AT4G17170.1 49.375 160 78 3 14 172 3 160 2.49e-49 160
Msa0104850 AT2G33870.1 47.024 168 86 3 13 179 9 174 1.30e-47 156
Msa0104850 AT4G18430.1 41.905 210 112 4 13 214 9 216 1.51e-46 153
Msa0104850 AT1G09630.1 40.476 210 115 4 13 214 8 215 1.66e-46 153
Msa0104850 AT5G60860.1 41.014 217 104 6 13 214 9 216 2.35e-46 153
Msa0104850 AT1G18200.1 48.214 168 84 3 13 179 9 174 4.20e-46 152
Msa0104850 AT3G07410.1 42.105 209 110 4 15 214 10 216 4.40e-46 152
Msa0104850 AT1G73640.1 48.214 168 84 3 13 179 9 174 4.75e-46 152
Msa0104850 AT1G28550.1 47.024 168 86 3 13 179 9 174 5.44e-46 152
Msa0104850 AT1G16920.1 47.619 168 85 3 13 179 9 174 6.74e-46 151
Msa0104850 AT5G45750.1 47.024 168 86 3 13 179 9 174 8.45e-46 151
Msa0104850 AT1G06400.1 47.619 168 85 3 13 179 9 174 1.90e-45 150
Msa0104850 AT4G18800.1 42.029 207 113 4 13 214 9 213 4.37e-45 149
Msa0104850 AT2G43130.1 41.262 206 113 5 15 214 10 213 5.78e-45 149
Msa0104850 AT3G15060.1 45.087 173 92 3 13 184 9 179 9.10e-45 149
Msa0104850 AT1G05810.1 45.029 171 91 3 15 184 10 178 1.63e-44 148
Msa0104850 AT5G47520.1 44.444 171 92 3 15 184 12 180 3.61e-44 147
Msa0104850 AT1G05810.2 45.029 171 91 3 15 184 56 224 5.20e-44 148
Msa0104850 AT1G07410.1 38.942 208 119 5 13 214 8 213 5.49e-44 147
Msa0104850 AT5G65270.1 41.176 170 97 3 13 181 13 180 6.62e-44 147
Msa0104850 AT3G46830.1 42.857 168 93 3 13 179 8 173 7.58e-43 144
Msa0104850 AT3G46830.2 42.857 168 93 3 13 179 8 173 7.58e-43 144
Msa0104850 AT3G12160.1 38.095 210 119 5 13 213 11 218 8.17e-43 144
Msa0104850 AT2G31680.1 45.783 166 87 3 15 179 10 173 8.74e-43 144
Msa0104850 AT1G01200.1 44.706 170 90 4 13 180 24 191 1.47e-42 144
Msa0104850 AT5G47960.1 36.792 212 121 6 13 213 11 220 3.81e-42 142
Msa0104850 AT5G59150.1 41.040 173 99 3 13 184 8 178 6.71e-42 141
Msa0104850 AT5G03520.2 42.938 177 90 5 45 215 34 205 4.81e-38 131
Msa0104850 AT4G39890.1 38.251 183 109 3 18 197 10 191 1.35e-37 130
Msa0104850 AT4G35860.2 50.407 123 59 2 58 180 2 122 1.69e-36 126
Msa0104850 AT3G54840.1 39.429 175 99 5 6 175 19 191 2.72e-34 121
Msa0104850 AT4G19640.1 38.889 162 96 3 19 179 12 171 5.36e-34 120
Msa0104850 AT5G45130.1 35.533 197 118 6 19 214 12 200 6.23e-34 120
Msa0104850 AT3G54840.3 40.506 158 90 4 20 175 2 157 8.85e-34 119
Msa0104850 AT5G10260.1 39.623 159 93 3 18 175 10 166 2.06e-33 119
Msa0104850 AT3G54840.2 40.764 157 89 4 19 173 35 189 4.88e-33 118
Msa0104850 AT2G44610.1 38.994 159 94 3 18 175 10 166 1.58e-32 117
Msa0104850 AT5G45130.2 34.872 195 118 6 21 214 22 208 2.83e-32 116
Msa0104850 AT2G22290.1 39.623 159 93 3 18 175 10 166 3.10e-32 116
Msa0104850 AT3G18820.1 39.024 164 92 5 17 173 8 170 3.87e-29 108
Msa0104850 AT5G64990.1 37.821 156 94 3 18 172 8 161 7.19e-29 107
Msa0104850 AT1G52280.1 35.149 202 105 6 17 211 8 190 1.01e-28 107
Msa0104850 AT4G09720.1 39.264 163 91 5 17 172 8 169 2.42e-28 106
Msa0104850 AT1G22740.1 38.037 163 93 5 17 172 8 169 3.88e-28 105
Msa0104850 AT3G16100.1 35.149 202 105 6 17 211 8 190 9.18e-28 104
Msa0104850 AT4G09720.4 38.690 168 90 6 17 172 8 174 1.01e-27 104
Msa0104850 AT1G49300.2 38.037 163 93 5 17 172 8 169 1.20e-27 104
Msa0104850 AT1G49300.1 38.037 163 93 5 17 172 8 169 1.20e-27 104
Msa0104850 AT5G39620.1 37.647 170 98 5 18 180 6 174 2.10e-27 103
Msa0104850 AT2G21880.1 37.805 164 92 6 17 172 9 170 8.08e-27 102
Msa0104850 AT4G09720.3 36.782 174 91 6 17 172 8 180 1.04e-26 102
Msa0104850 AT5G55080.1 39.024 164 92 6 18 179 14 171 2.82e-26 101
Msa0104850 AT5G64990.2 36.196 163 94 4 18 172 8 168 3.90e-26 100
Msa0104850 AT5G59150.2 38.211 123 74 2 57 179 2 122 1.95e-25 97.8
Msa0104850 AT4G19640.2 39.844 128 74 3 19 145 12 137 8.81e-25 95.5
Msa0104850 AT4G19640.3 39.098 133 78 3 19 150 12 142 1.58e-24 96.3
Msa0104850 AT2G44690.1 31.667 180 108 5 17 184 18 194 1.60e-24 96.7
Msa0104850 AT5G20010.1 35.789 190 105 8 7 185 2 185 3.53e-24 95.9
Msa0104850 AT5G55190.1 37.356 174 100 7 9 179 4 171 5.27e-24 95.5
Msa0104850 AT5G20020.1 36.932 176 102 7 7 179 2 171 7.38e-24 95.1
Msa0104850 AT4G35020.1 30.168 179 110 5 17 183 6 181 1.00e-22 91.7
Msa0104850 AT4G35020.2 30.168 179 110 5 17 183 6 181 1.00e-22 91.7
Msa0104850 AT4G35020.3 30.168 179 110 5 17 183 6 181 1.00e-22 91.7
Msa0104850 AT3G51300.1 31.034 174 105 5 19 180 8 178 1.36e-22 91.3
Msa0104850 AT3G48040.1 30.526 190 113 7 8 185 2 184 7.48e-22 89.4
Msa0104850 AT4G28950.1 29.379 177 112 5 17 183 6 179 1.04e-21 89.0
Msa0104850 AT2G17800.2 30.114 176 108 5 17 180 6 178 2.20e-21 87.8
Msa0104850 AT2G17800.1 30.114 176 108 5 17 180 6 178 2.20e-21 87.8
Msa0104850 AT4G09720.6 40.458 131 71 4 48 172 6 135 2.34e-21 87.4
Msa0104850 AT4G09720.5 40.458 131 71 4 48 172 6 135 2.34e-21 87.4
Msa0104850 AT4G09720.2 40.458 131 71 4 48 172 6 135 2.34e-21 87.4
Msa0104850 AT1G20090.1 29.545 176 109 5 17 180 5 177 2.38e-21 87.8
Msa0104850 AT1G75840.1 29.545 176 109 5 17 180 6 178 3.04e-21 87.4
Msa0104850 AT4G35950.1 29.545 176 109 5 17 180 6 178 1.16e-20 85.9
Msa0104850 AT5G62880.1 29.189 185 113 6 8 180 2 180 3.84e-20 85.1
Msa0104850 AT5G45970.1 28.488 172 108 5 17 176 6 174 7.03e-20 84.0
Msa0104850 AT3G48040.2 30.939 181 106 7 8 175 2 176 9.51e-20 83.2
Msa0104850 AT2G21880.4 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0104850 AT2G21880.3 38.636 132 72 5 48 172 16 145 1.46e-19 82.8
Msa0104850 AT2G21880.2 32.927 164 92 7 17 172 9 162 1.46e-17 78.2
Msa0104850 AT5G62880.2 30.000 170 101 6 8 165 2 165 1.99e-17 77.4
Msa0104850 AT3G51290.2 29.605 152 93 4 40 180 631 779 2.08e-15 74.7
Msa0104850 AT4G35020.4 34.483 116 72 3 19 133 8 120 3.19e-15 70.5
Msa0104850 AT4G35020.5 34.483 116 72 3 19 133 8 120 3.19e-15 70.5
Msa0104850 AT5G46025.1 35.577 104 66 1 78 181 6 108 3.41e-15 69.3
Msa0104850 AT5G37680.1 29.545 176 97 9 14 176 16 177 1.17e-12 64.3
Msa0104850 AT3G49870.2 32.934 167 95 9 18 176 1 158 2.41e-12 63.2
Msa0104850 AT3G49870.1 32.749 171 98 9 14 176 16 177 4.01e-12 62.8
Msa0104850 AT5G67560.1 32.749 171 98 9 14 176 16 177 4.18e-12 62.8
Msa0104850 AT5G64813.1 28.221 163 87 6 19 153 24 184 8.44e-11 60.8
Msa0104850 AT5G64813.3 28.221 163 87 6 19 153 24 184 8.44e-11 60.8
Msa0104850 AT5G64813.2 28.221 163 87 6 19 153 24 184 8.44e-11 60.8
Msa0104850 AT3G22950.1 28.244 131 87 3 18 148 18 141 9.00e-11 59.3
Msa0104850 AT3G22950.2 28.244 131 87 3 18 148 18 141 9.00e-11 59.3

Find 63 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAATCTATCTGATATA+TGG 0.206669 1_3:-13034466 Msa0104850:CDS
CTTCTTATGATTGGTGATTC+TGG 0.217855 1_3:-13038102 Msa0104850:CDS
AAAAGTTAAAACTTGCTATA+TGG 0.235008 1_3:-13036620 Msa0104850:CDS
ACTGCAGAAGAACTTGAATT+TGG 0.243651 1_3:-13033458 Msa0104850:three_prime_UTR
GTGGACTTTGCAAGGCAATA+TGG 0.296394 1_3:-13034226 Msa0104850:CDS
GAAAGGTTTAGAACACTTAC+TGG 0.298839 1_3:-13036078 Msa0104850:CDS
CTCTTGGCTGAGGGCTCATC+TGG 0.314169 1_3:-13033798 Msa0104850:CDS
AGGTGCACAAGGAATAATTA+TGG 0.331547 1_3:-13036043 Msa0104850:CDS
TGAAAGGGCTGTTACCAAAA+AGG 0.345224 1_3:-13034254 Msa0104850:CDS
AATGGATGTTTCTTCTTCTT+CGG 0.349573 1_3:-13038160 Msa0104850:CDS
AAAGTTAAAACTTGCTATAT+GGG 0.360234 1_3:-13036619 Msa0104850:CDS
TTGTTCAAGCTTCTTATGAT+TGG 0.383844 1_3:-13038111 Msa0104850:CDS
GACTGCATCAAGATGCTTGT+TGG 0.385964 1_3:-13034410 Msa0104850:CDS
TACAAATCTATCTGATATAT+GGG 0.404262 1_3:-13034465 Msa0104850:CDS
CTTACTGGTTCTTATTATAG+AGG 0.404947 1_3:-13036063 Msa0104850:CDS
TCTAAATAGCTAGTAGTAGA+AGG 0.417875 1_3:-13033288 Msa0104850:three_prime_UTR
CTTGTGTTGAATGAATTATA+TGG 0.423704 1_3:+13038246 None:intergenic
GTTAAATATGTTACACTTGG+TGG 0.437372 1_3:-13036645 Msa0104850:CDS
TTCTTGTTGTGCAGCTGGAC+AGG 0.444913 1_3:-13036100 Msa0104850:intron
AATCGCGGTTTATTCTGAAA+TGG 0.447740 1_3:-13038178 Msa0104850:exon
GATGTGAATTTCAAGTACTA+TGG 0.457754 1_3:-13033659 Msa0104850:three_prime_UTR
GAAGATCTTTCTCCCACCAT+TGG 0.467139 1_3:-13038033 Msa0104850:intron
TGGACTTTGCAAGGCAATAT+GGG 0.468552 1_3:-13034225 Msa0104850:CDS
GGTGCACAAGGAATAATTAT+GGG 0.473429 1_3:-13036042 Msa0104850:intron
TTCTGCAGTCCAGAGGGGAA+TGG 0.479427 1_3:+13033472 None:intergenic
TAGCACTGCATTCAGTATAG+AGG 0.481591 1_3:+13034200 None:intergenic
ATGATTGGTGATTCTGGTGT+TGG 0.482975 1_3:-13038096 Msa0104850:CDS
GATAATCGCCCATTCCCCTC+TGG 0.483678 1_3:-13033481 Msa0104850:three_prime_UTR
TCTGCAGTCCAGAGGGGAAT+GGG 0.485952 1_3:+13033473 None:intergenic
TTTGGATACACCAAGCCTCT+TGG 0.489303 1_3:-13033814 Msa0104850:CDS
CTTGAATTTGGTTTCTTCTG+CGG 0.498612 1_3:-13033446 Msa0104850:three_prime_UTR
TACACCAAGCCTCTTGGCTG+AGG 0.504548 1_3:-13033808 Msa0104850:CDS
TTTGGTTTCTTCTGCGGTGG+TGG 0.509834 1_3:-13033440 Msa0104850:three_prime_UTR
TTATTATGCGAACTAAAATG+AGG 0.522458 1_3:-13033351 Msa0104850:three_prime_UTR
ATTCACATCATACTGAAAAG+TGG 0.524648 1_3:+13033673 None:intergenic
CACCTAGCAGCTGTTGCTCA+TGG 0.531342 1_3:-13033728 Msa0104850:CDS
GAGCCCTCAGCCAAGAGGCT+TGG 0.532229 1_3:+13033804 None:intergenic
TGCGGTGGTGGTAAAATAGT+CGG 0.545146 1_3:-13033428 Msa0104850:three_prime_UTR
TATGAAATCTGTCTCTACAT+AGG 0.550880 1_3:-13033538 Msa0104850:three_prime_UTR
AGGAAGCGGTGGACTTTGCA+AGG 0.556741 1_3:-13034234 Msa0104850:CDS
GAATTTGGTTTCTTCTGCGG+TGG 0.565775 1_3:-13033443 Msa0104850:three_prime_UTR
AAGTTCTTCTGCAGTCCAGA+GGG 0.571608 1_3:+13033466 None:intergenic
AAAGTTAAATATGTTACACT+TGG 0.573517 1_3:-13036648 Msa0104850:CDS
CAGCAACCACATTGTAAACA+AGG 0.575834 1_3:+13033222 None:intergenic
CACCATGAGCAACAGCTGCT+AGG 0.588474 1_3:+13033726 None:intergenic
ACACCAAGCCTCTTGGCTGA+GGG 0.602694 1_3:-13033807 Msa0104850:CDS
GGTGATGCATCAGACTCTTG+CGG 0.604993 1_3:+13033747 None:intergenic
AATTAGTGAAAGAAGACAAG+AGG 0.606920 1_3:-13033245 Msa0104850:three_prime_UTR
TATCACGAGGAATAGAACTC+AGG 0.608076 1_3:+13033500 None:intergenic
CAAGTTCTTCTGCAGTCCAG+AGG 0.608534 1_3:+13033465 None:intergenic
TTTGTGAACAAACCAATGGT+GGG 0.622071 1_3:+13038021 None:intergenic
CACATCATACTGAAAAGTGG+AGG 0.630350 1_3:+13033676 None:intergenic
GTTGTGCAGCTGGACAGGAA+AGG 0.631383 1_3:-13036095 Msa0104850:intron
AAACTTGCTATATGGGACAC+AGG 0.637147 1_3:-13036612 Msa0104850:intron
TCTTATTATAGAGGTGCACA+AGG 0.643319 1_3:-13036054 Msa0104850:CDS
ACATCATACTGAAAAGTGGA+GGG 0.649542 1_3:+13033677 None:intergenic
AAGAGGCCTTGTTTACAATG+TGG 0.652931 1_3:-13033228 None:intergenic
CAGATGAGCCCTCAGCCAAG+AGG 0.652984 1_3:+13033799 None:intergenic
TGTTGGAAACAAAGTTGACA+AGG 0.666842 1_3:-13034393 Msa0104850:intron
TCGAAGCTTAAACTGAATCG+CGG 0.689908 1_3:-13038193 Msa0104850:five_prime_UTR
AGTTCTTCTGCAGTCCAGAG+GGG 0.701905 1_3:+13033467 None:intergenic
GGGAATGGGCGATTATCACG+AGG 0.719820 1_3:+13033487 None:intergenic
GAACAAGTAATCGAATTCAG+CGG 0.723999 1_3:+13038128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTGAAGATTTATAT+TGG + chr1_3:13035142-13035161 None:intergenic 10.0%
!!! TTATTTTATATAGTATGATA+GGG - chr1_3:13036109-13036128 Msa0104850:intron 10.0%
!! AACGATAATAAAATAAAAAA+TGG - chr1_3:13037558-13037577 Msa0104850:intron 10.0%
!! TTGATATTATTACATCAAAA+CGG + chr1_3:13035109-13035128 None:intergenic 15.0%
!!! TATGTTTTCTAAAATATACA+CGG + chr1_3:13035218-13035237 None:intergenic 15.0%
!! TTATTCTCTTTATGTTATTA+TGG - chr1_3:13035633-13035652 Msa0104850:intron 15.0%
!!! AAATAAAATTGATTAGCTTA+GGG + chr1_3:13035811-13035830 None:intergenic 15.0%
!!! CTTATTTTATATAGTATGAT+AGG - chr1_3:13036108-13036127 Msa0104850:intron 15.0%
!! TAATTCTATTACAATAGAAA+AGG + chr1_3:13036765-13036784 None:intergenic 15.0%
!!! TATTTTTTTTAGGTTTAGTA+TGG + chr1_3:13036797-13036816 None:intergenic 15.0%
!! ATACTAAACCTAAAAAAAAT+AGG - chr1_3:13036796-13036815 Msa0104850:intron 15.0%
!!! TATTAATTTTCATGTTTTTG+AGG + chr1_3:13037415-13037434 None:intergenic 15.0%
!!! GATTTTTGTCAATTTATGTT+TGG - chr1_3:13033756-13033775 Msa0104850:CDS 20.0%
!! TTACTATTTCATTATCTATC+TGG - chr1_3:13034508-13034527 Msa0104850:intron 20.0%
!! TACTATTTCATTATCTATCT+GGG - chr1_3:13034509-13034528 Msa0104850:intron 20.0%
!! TAGGTCTATATTAACATTAT+AGG + chr1_3:13034660-13034679 None:intergenic 20.0%
!!! ATGCAATATAAGGTTTTTTT+AGG + chr1_3:13034679-13034698 None:intergenic 20.0%
!! AAAAAAACCTTATATTGCAT+TGG - chr1_3:13034679-13034698 Msa0104850:intron 20.0%
!! AAAAAACCTTATATTGCATT+GGG - chr1_3:13034680-13034699 Msa0104850:intron 20.0%
!! TACATTAATCTATAATTGAG+TGG + chr1_3:13034792-13034811 None:intergenic 20.0%
!! AAAGTTAAATATGTTACACT+TGG - chr1_3:13034869-13034888 Msa0104850:intron 20.0%
!!! AAAAGTTAAAACTTGCTATA+TGG - chr1_3:13034897-13034916 Msa0104850:intron 20.0%
!!! AAAGTTAAAACTTGCTATAT+GGG - chr1_3:13034898-13034917 Msa0104850:intron 20.0%
!!! ATGTTATTTTTCATCATTCA+TGG - chr1_3:13034971-13034990 Msa0104850:intron 20.0%
!!! TGTTATTTTTCATCATTCAT+GGG - chr1_3:13034972-13034991 Msa0104850:intron 20.0%
!!! TTTTGAAGATTTATATTGGT+AGG + chr1_3:13035138-13035157 None:intergenic 20.0%
!!! ATGTTTTCTAAAATATACAC+GGG + chr1_3:13035217-13035236 None:intergenic 20.0%
!! TAATTGTACATCATATTCAT+GGG + chr1_3:13035551-13035570 None:intergenic 20.0%
!! TTAATTGTACATCATATTCA+TGG + chr1_3:13035552-13035571 None:intergenic 20.0%
!!! ATATTCCCTTTATGTTTTTA+TGG - chr1_3:13035658-13035677 Msa0104850:intron 20.0%
!! CATTACCATAAAAACATAAA+GGG + chr1_3:13035666-13035685 None:intergenic 20.0%
!!! GAAATAAAATTGATTAGCTT+AGG + chr1_3:13035812-13035831 None:intergenic 20.0%
!!! TCAATTTTATTTCGAAATTC+AGG - chr1_3:13035819-13035838 Msa0104850:intron 20.0%
!!! CAATTTTATTTCGAAATTCA+GGG - chr1_3:13035820-13035839 Msa0104850:intron 20.0%
!!! TTTTCAAATTTGAGAATCAT+TGG - chr1_3:13036074-13036093 Msa0104850:CDS 20.0%
!! TACTCAAACTATATTGTATA+AGG + chr1_3:13036159-13036178 None:intergenic 20.0%
!!! ATTTTTATTTTAAAAGAGCG+AGG - chr1_3:13036209-13036228 Msa0104850:intron 20.0%
!!! TTTTTATTTTAAAAGAGCGA+GGG - chr1_3:13036210-13036229 Msa0104850:intron 20.0%
!! AGATATAGTAACATAATACT+TGG + chr1_3:13036410-13036429 None:intergenic 20.0%
!! ATATTAAGTAAAGTAGAACT+AGG - chr1_3:13036830-13036849 Msa0104850:intron 20.0%
!! TATTAAGTAAAGTAGAACTA+GGG - chr1_3:13036831-13036850 Msa0104850:intron 20.0%
!! TTACAAATCTATCTGATATA+TGG - chr1_3:13037051-13037070 Msa0104850:intron 20.0%
!! TACAAATCTATCTGATATAT+GGG - chr1_3:13037052-13037071 Msa0104850:intron 20.0%
!!! TTTTGCTTATCTCATATTTT+AGG - chr1_3:13037236-13037255 Msa0104850:intron 20.0%
!!! GACTAACGAAATTAATTTTT+TGG + chr1_3:13037900-13037919 None:intergenic 20.0%
! ATATGGAAAGTTGAAAAAGA+AGG + chr1_3:13033257-13033276 None:intergenic 25.0%
! CTTGTGTTGAATGAATTATA+TGG + chr1_3:13033274-13033293 None:intergenic 25.0%
! TCCAAAATGCATGAATAAAA+GGG + chr1_3:13033545-13033564 None:intergenic 25.0%
! ATCCAAAATGCATGAATAAA+AGG + chr1_3:13033546-13033565 None:intergenic 25.0%
!!! CGTACTATTAACATTGATTT+TGG - chr1_3:13033627-13033646 Msa0104850:three_prime_UTR 25.0%
!!! TAACATTGATTTTGGTTCTA+CGG - chr1_3:13033635-13033654 Msa0104850:three_prime_UTR 25.0%
! AGAGTTACATAAAGTGATTT+AGG - chr1_3:13033708-13033727 Msa0104850:exon 25.0%
!! TTATTAGCTTCTTGAAATCA+TGG + chr1_3:13034155-13034174 None:intergenic 25.0%
! TGATTTCAAGAAGCTAATAA+AGG - chr1_3:13034155-13034174 Msa0104850:CDS 25.0%
!!! AGACTTATTGTACTTTTTCA+CGG - chr1_3:13034257-13034276 Msa0104850:CDS 25.0%
! AAAAAAAAAAGACATGTGAG+AGG + chr1_3:13034481-13034500 None:intergenic 25.0%
! ACTATTTCATTATCTATCTG+GGG - chr1_3:13034510-13034529 Msa0104850:intron 25.0%
! TTTATGAATTGAACGTAAGA+TGG + chr1_3:13034637-13034656 None:intergenic 25.0%
! AAAAACCTTATATTGCATTG+GGG - chr1_3:13034681-13034700 Msa0104850:intron 25.0%
! TCATTCATATGACTTCTTAA+AGG + chr1_3:13034727-13034746 None:intergenic 25.0%
! TAATCTATAATTGAGTGGTA+GGG + chr1_3:13034787-13034806 None:intergenic 25.0%
! TTAATCTATAATTGAGTGGT+AGG + chr1_3:13034788-13034807 None:intergenic 25.0%
!!! CATATGCTGATTTAGTTTTT+TGG - chr1_3:13034936-13034955 Msa0104850:intron 25.0%
!! ATTCTGTAGTATTTAAGATG+TGG - chr1_3:13035034-13035053 Msa0104850:intron 25.0%
! TACAAAATGGGAAAAAATCA+AGG + chr1_3:13035507-13035526 None:intergenic 25.0%
! CCATTACCATAAAAACATAA+AGG + chr1_3:13035667-13035686 None:intergenic 25.0%
!!! CCTTTATGTTTTTATGGTAA+TGG - chr1_3:13035664-13035683 Msa0104850:intron 25.0%
! AAAAATTGAATTTGAGCACA+AGG + chr1_3:13036195-13036214 None:intergenic 25.0%
!! CAAAGTATTTGATCAATGTA+TGG + chr1_3:13036282-13036301 None:intergenic 25.0%
! AAAAAACCAGAAAAACCAAA+AGG + chr1_3:13036563-13036582 None:intergenic 25.0%
! ACAAGGAATTCTTTAAATAG+AGG + chr1_3:13036591-13036610 None:intergenic 25.0%
!!! TGAAGAAGAGTATTTTACTT+CGG - chr1_3:13036645-13036664 Msa0104850:CDS 25.0%
!!! ATTCTCTGCCTATTTTTTTT+AGG + chr1_3:13036807-13036826 None:intergenic 25.0%
! TATAAACCGATAGATAAATG+TGG + chr1_3:13036967-13036986 None:intergenic 25.0%
! TGTAAACTTATCAGTGAATA+TGG - chr1_3:13036988-13037007 Msa0104850:intron 25.0%
! GTAAACTTATCAGTGAATAT+GGG - chr1_3:13036989-13037008 Msa0104850:intron 25.0%
! TCAAAACTTAACACACAATT+TGG + chr1_3:13037190-13037209 None:intergenic 25.0%
!!! ATTGTGTGTTAAGTTTTGAT+CGG - chr1_3:13037191-13037210 Msa0104850:intron 25.0%
!!! TCATATTTTAGGAAAGTGAA+AGG - chr1_3:13037247-13037266 Msa0104850:intron 25.0%
!!! CATATTTTAGGAAAGTGAAA+GGG - chr1_3:13037248-13037267 Msa0104850:intron 25.0%
! CAAGAAAAAATTGTCAAGAA+AGG + chr1_3:13037483-13037502 None:intergenic 25.0%
!!! TGGTGATTATGATGTTTTTA+AGG - chr1_3:13037809-13037828 Msa0104850:intron 25.0%
!! CATCAAAGCATTAAAAAAGT+AGG + chr1_3:13037952-13037971 None:intergenic 25.0%
! TTATTATGCGAACTAAAATG+AGG - chr1_3:13038166-13038185 Msa0104850:exon 25.0%
AATGGATGTTTCTTCTTCTT+CGG - chr1_3:13033357-13033376 Msa0104850:three_prime_UTR 30.0%
TTGTTCAAGCTTCTTATGAT+TGG - chr1_3:13033406-13033425 Msa0104850:intron 30.0%
GGGGAAAAACATTGAAATAA+GGG + chr1_3:13033523-13033542 None:intergenic 30.0%
AAAATGCATGAATAAAAGGG+GGG + chr1_3:13033542-13033561 None:intergenic 30.0%
CAAAATGCATGAATAAAAGG+GGG + chr1_3:13033543-13033562 None:intergenic 30.0%
CCAAAATGCATGAATAAAAG+GGG + chr1_3:13033544-13033563 None:intergenic 30.0%
TCTGTGTTTATTCAATGTAG+CGG - chr1_3:13033572-13033591 Msa0104850:three_prime_UTR 30.0%
ATTCAAACATGCATTCAAAG+TGG + chr1_3:13033822-13033841 None:intergenic 30.0%
CCATACCAAAATCAAACTTA+CGG + chr1_3:13033852-13033871 None:intergenic 30.0%
!! AAGTTTGATTTTGGTATGGT+CGG - chr1_3:13033853-13033872 Msa0104850:intron 30.0%
! ATTGATTCTGACATAAAGCT+AGG - chr1_3:13033901-13033920 Msa0104850:intron 30.0%
CCTCAAATGTGATTAATGTT+CGG + chr1_3:13033998-13034017 None:intergenic 30.0%
! AGTCAAATGTGATTTGACTT+CGG + chr1_3:13034028-13034047 None:intergenic 30.0%
! ACTAACCAAAACGTGATTTT+TGG - chr1_3:13034045-13034064 Msa0104850:intron 30.0%
TTGGGAGAAATTTAAGGAAT+CGG - chr1_3:13034591-13034610 Msa0104850:intron 30.0%
AATTTAAGGAATCGGAATAG+TGG - chr1_3:13034599-13034618 Msa0104850:intron 30.0%
CATATGACTTCTTAAAGGAA+AGG + chr1_3:13034722-13034741 None:intergenic 30.0%
AAGAAGTCATATGAATGAGA+TGG - chr1_3:13034729-13034748 Msa0104850:intron 30.0%
GTTAAATATGTTACACTTGG+TGG - chr1_3:13034872-13034891 Msa0104850:intron 30.0%
AGTCATGTAACTTTGTAACA+AGG + chr1_3:13035336-13035355 None:intergenic 30.0%
!! CTTACTGGTTCTTATTATAG+AGG - chr1_3:13035454-13035473 Msa0104850:intron 30.0%
AGGAAACATAGCTACAAAAT+GGG + chr1_3:13035519-13035538 None:intergenic 30.0%
TAATTACCATAGATAGCCTA+TGG - chr1_3:13035785-13035804 Msa0104850:intron 30.0%
TTTACAAAGCAATGTACAAG+AGG + chr1_3:13035861-13035880 None:intergenic 30.0%
! TATATATGCCCTCGATATTT+TGG - chr1_3:13035976-13035995 Msa0104850:intron 30.0%
ATGTTCATCCAAAATATCGA+GGG + chr1_3:13035987-13036006 None:intergenic 30.0%
! ACTTTGAAAGCTTAAACTGT+TGG - chr1_3:13036296-13036315 Msa0104850:intron 30.0%
GAAAGCTGAATAGTGAATTT+AGG - chr1_3:13036383-13036402 Msa0104850:intron 30.0%
! TGTTGTTGTTGTTGTTGTTA+TGG + chr1_3:13036490-13036509 None:intergenic 30.0%
!!! AAATGACCTTTTGGTTTTTC+TGG - chr1_3:13036554-13036573 Msa0104850:intron 30.0%
AGTCAGTCATAGTATGTATA+TGG - chr1_3:13036622-13036641 Msa0104850:CDS 30.0%
!!! TTTTTAGGTTTAGTATGGAG+TGG + chr1_3:13036792-13036811 None:intergenic 30.0%
! AAATAGCATTTTAGGCATCT+AGG + chr1_3:13036891-13036910 None:intergenic 30.0%
! AGTCACTGAAATAGCATTTT+AGG + chr1_3:13036899-13036918 None:intergenic 30.0%
TAGCTACCACATTTATCTAT+CGG - chr1_3:13036958-13036977 Msa0104850:intron 30.0%
TGGAAGTAATGTTTCAATGT+TGG - chr1_3:13037657-13037676 Msa0104850:intron 30.0%
GGAAGTAATGTTTCAATGTT+GGG - chr1_3:13037658-13037677 Msa0104850:intron 30.0%
CAAAATCTGGAAACAACAAA+AGG + chr1_3:13037687-13037706 None:intergenic 30.0%
!!! CTTTTGTTGTTTCCAGATTT+TGG - chr1_3:13037685-13037704 Msa0104850:intron 30.0%
ATTCACATCATACTGAAAAG+TGG + chr1_3:13037847-13037866 None:intergenic 30.0%
! GATGTGAATTTCAAGTACTA+TGG - chr1_3:13037858-13037877 Msa0104850:intron 30.0%
TATGAAATCTGTCTCTACAT+AGG - chr1_3:13037979-13037998 Msa0104850:intron 30.0%
TAATGAAACAGAAAGCAACA+TGG + chr1_3:13038124-13038143 None:intergenic 30.0%
TCTAAATAGCTAGTAGTAGA+AGG - chr1_3:13038229-13038248 Msa0104850:five_prime_UTR 30.0%
AATTAGTGAAAGAAGACAAG+AGG - chr1_3:13038272-13038291 Msa0104850:five_prime_UTR 30.0%
! AATCGCGGTTTATTCTGAAA+TGG - chr1_3:13033339-13033358 Msa0104850:three_prime_UTR 35.0%
GAACAAGTAATCGAATTCAG+CGG + chr1_3:13033392-13033411 None:intergenic 35.0%
! CTTCTTATGATTGGTGATTC+TGG - chr1_3:13033415-13033434 Msa0104850:three_prime_UTR 35.0%
TTTGTGAACAAACCAATGGT+GGG + chr1_3:13033499-13033518 None:intergenic 35.0%
! TTTTGTGAACAAACCAATGG+TGG + chr1_3:13033500-13033519 None:intergenic 35.0%
GGGGGAAAAACATTGAAATA+AGG + chr1_3:13033524-13033543 None:intergenic 35.0%
! CCCCTTTTATTCATGCATTT+TGG - chr1_3:13033541-13033560 Msa0104850:three_prime_UTR 35.0%
!! GCTCTAGAATTATTCGTTTG+AGG - chr1_3:13033596-13033615 Msa0104850:three_prime_UTR 35.0%
!! TGAAGCCGTAAGTTTGATTT+TGG - chr1_3:13033844-13033863 Msa0104850:intron 35.0%
!! CCGTAAGTTTGATTTTGGTA+TGG - chr1_3:13033849-13033868 Msa0104850:intron 35.0%
CCGAACATTAATCACATTTG+AGG - chr1_3:13033995-13034014 Msa0104850:intron 35.0%
!! AACCAAAACGTGATTTTTGG+AGG - chr1_3:13034048-13034067 Msa0104850:intron 35.0%
CCATGTTCTTCTTGAAATCA+TGG + chr1_3:13034208-13034227 None:intergenic 35.0%
CCATGATTTCAAGAAGAACA+TGG - chr1_3:13034205-13034224 Msa0104850:CDS 35.0%
AATAAGTCTTCGCATCTGTT+TGG + chr1_3:13034246-13034265 None:intergenic 35.0%
!! AGGTTTAGTTTGGTTTGGTT+TGG - chr1_3:13034319-13034338 Msa0104850:intron 35.0%
!! GGTTTAGTTTGGTTTGGTTT+GGG - chr1_3:13034320-13034339 Msa0104850:intron 35.0%
!! GTTTAGTTTGGTTTGGTTTG+GGG - chr1_3:13034321-13034340 Msa0104850:intron 35.0%
CAAGATATTGCATGAGTGTA+GGG - chr1_3:13034379-13034398 Msa0104850:intron 35.0%
AAGATATTGCATGAGTGTAG+GGG - chr1_3:13034380-13034399 Msa0104850:intron 35.0%
ATTCCACCAAATGTCATTAG+TGG - chr1_3:13034430-13034449 Msa0104850:CDS 35.0%
CAAGGAAATACTCAGAAAAG+TGG + chr1_3:13034457-13034476 None:intergenic 35.0%
AAAAAGCTTCTCTCTCATAG+TGG - chr1_3:13034565-13034584 Msa0104850:intron 35.0%
TGGTTGTTGGGAGAAATTTA+AGG - chr1_3:13034585-13034604 Msa0104850:intron 35.0%
! GACTCTTTTGAACATAATGC+AGG - chr1_3:13034836-13034855 Msa0104850:intron 35.0%
AACTTCTTGTGTATTGAGTG+TGG - chr1_3:13035057-13035076 Msa0104850:intron 35.0%
!! CAGAAATTAGCAGCTTGTTT+TGG - chr1_3:13035292-13035311 Msa0104850:intron 35.0%
TGTAACTTTGTAACAAGGAG+AGG + chr1_3:13035331-13035350 None:intergenic 35.0%
GAAGTCTGTTCAATCATATC+TGG - chr1_3:13035367-13035386 Msa0104850:intron 35.0%
! GAAAGGTTTAGAACACTTAC+TGG - chr1_3:13035439-13035458 Msa0104850:intron 35.0%
! TCTTATTATAGAGGTGCACA+AGG - chr1_3:13035463-13035482 Msa0104850:intron 35.0%
AGGTGCACAAGGAATAATTA+TGG - chr1_3:13035474-13035493 Msa0104850:intron 35.0%
GGTGCACAAGGAATAATTAT+GGG - chr1_3:13035475-13035494 Msa0104850:intron 35.0%
CAGGAAACATAGCTACAAAA+TGG + chr1_3:13035520-13035539 None:intergenic 35.0%
!! ATGGTAATGGATAGCAAACT+TGG - chr1_3:13035677-13035696 Msa0104850:intron 35.0%
ATACTTTCTTGAGGTTGAAG+TGG - chr1_3:13035920-13035939 Msa0104850:intron 35.0%
CATGTTCATCCAAAATATCG+AGG + chr1_3:13035988-13036007 None:intergenic 35.0%
!! CTCGATATTTTGGATGAACA+TGG - chr1_3:13035986-13036005 Msa0104850:intron 35.0%
!! GATATCTTGAGTTGAGATGT+TGG + chr1_3:13036239-13036258 None:intergenic 35.0%
CATCTCAACTCAAGATATCA+AGG - chr1_3:13036240-13036259 Msa0104850:intron 35.0%
CAACTCAAGATATCAAGGTT+AGG - chr1_3:13036245-13036264 Msa0104850:intron 35.0%
! AAAGCTTAAACTGTTGGTGA+AGG - chr1_3:13036302-13036321 Msa0104850:intron 35.0%
! GTTGGTGAAGGAACAAAAAA+TGG - chr1_3:13036314-13036333 Msa0104850:intron 35.0%
! ACATGGATCAAATGACCTTT+TGG - chr1_3:13036545-13036564 Msa0104850:intron 35.0%
!! ACTATGACTGACTAGTTCTA+CGG + chr1_3:13036615-13036634 None:intergenic 35.0%
AAAGTAGAACTAGGGAAAAC+AGG - chr1_3:13036839-13036858 Msa0104850:intron 35.0%
TGTTGGAAACAAAGTTGACA+AGG - chr1_3:13037124-13037143 Msa0104850:intron 35.0%
! AAATGTTGAGCAGTGTTTTG+AGG - chr1_3:13037350-13037369 Msa0104850:intron 35.0%
!! TTTTGAGGAGCTTGTAATGA+AGG - chr1_3:13037365-13037384 Msa0104850:intron 35.0%
!!! TTTTCATGTTTTTGAGGCCA+TGG + chr1_3:13037409-13037428 None:intergenic 35.0%
! AAAACTACCAACTTTTCAGC+AGG + chr1_3:13037450-13037469 None:intergenic 35.0%
GCAACTAACTTGAAGCAAAT+AGG + chr1_3:13037608-13037627 None:intergenic 35.0%
! AAGTACAAGTCAGCATTTTC+AGG - chr1_3:13037631-13037650 Msa0104850:intron 35.0%
ACATCATACTGAAAAGTGGA+GGG + chr1_3:13037843-13037862 None:intergenic 35.0%
ACTGCAGAAGAACTTGAATT+TGG - chr1_3:13038059-13038078 Msa0104850:CDS 35.0%
! CTTGAATTTGGTTTCTTCTG+CGG - chr1_3:13038071-13038090 Msa0104850:CDS 35.0%
TCGAAGCTTAAACTGAATCG+CGG - chr1_3:13033324-13033343 Msa0104850:three_prime_UTR 40.0%
! ATGATTGGTGATTCTGGTGT+TGG - chr1_3:13033421-13033440 Msa0104850:three_prime_UTR 40.0%
!! GGGTTTTGTGAACAAACCAA+TGG + chr1_3:13033503-13033522 None:intergenic 40.0%
! GACCTCCAAAAATCACGTTT+TGG + chr1_3:13034053-13034072 None:intergenic 40.0%
!! GATTTTTGGAGGTCTAGACT+TGG - chr1_3:13034059-13034078 Msa0104850:intron 40.0%
TCTAGACTTGGAACCAAATG+TGG - chr1_3:13034071-13034090 Msa0104850:intron 40.0%
CTAGACTTGGAACCAAATGT+GGG - chr1_3:13034072-13034091 Msa0104850:intron 40.0%
AGGAAGCTTCTGTAGTAATG+CGG - chr1_3:13034175-13034194 Msa0104850:CDS 40.0%
GCAAGATATTGCATGAGTGT+AGG - chr1_3:13034378-13034397 Msa0104850:intron 40.0%
AGATATTGCATGAGTGTAGG+GGG - chr1_3:13034381-13034400 Msa0104850:intron 40.0%
AGTGGTCCACTAATGACATT+TGG + chr1_3:13034439-13034458 None:intergenic 40.0%
AAAAGACATGTGAGAGGACA+AGG + chr1_3:13034475-13034494 None:intergenic 40.0%
TTCTCTCTCATAGTGGTTGT+TGG - chr1_3:13034572-13034591 Msa0104850:intron 40.0%
TCTCTCTCATAGTGGTTGTT+GGG - chr1_3:13034573-13034592 Msa0104850:intron 40.0%
ACCTTATATTGCATTGGGGA+AGG - chr1_3:13034685-13034704 Msa0104850:intron 40.0%
ACCTTCCCCAATGCAATATA+AGG + chr1_3:13034689-13034708 None:intergenic 40.0%
! TGAATGAGATGGTTTGTGTG+TGG - chr1_3:13034740-13034759 Msa0104850:intron 40.0%
GGGACGATAAAACAGTATCA+TGG + chr1_3:13034767-13034786 None:intergenic 40.0%
!! AAACTTGCTATATGGGACAC+AGG - chr1_3:13034905-13034924 Msa0104850:intron 40.0%
ATATTCATGGGATAACGAGC+AGG + chr1_3:13035539-13035558 None:intergenic 40.0%
!! ATTGATTAGCTTAGGGCCAT+AGG + chr1_3:13035804-13035823 None:intergenic 40.0%
TCGATTGCGATACTTTCTTG+AGG - chr1_3:13035911-13035930 Msa0104850:intron 40.0%
CTCAAGATATCAAGGTTAGG+AGG - chr1_3:13036248-13036267 Msa0104850:intron 40.0%
ACTAGGGAAAACAGGATTCT+AGG - chr1_3:13036847-13036866 Msa0104850:intron 40.0%
TGAAAGGGCTGTTACCAAAA+AGG - chr1_3:13037263-13037282 Msa0104850:intron 40.0%
TGGACTTTGCAAGGCAATAT+GGG - chr1_3:13037292-13037311 Msa0104850:intron 40.0%
TAGCACTGCATTCAGTATAG+AGG + chr1_3:13037320-13037339 None:intergenic 40.0%
AGCAAATAGGTGCTTGGATA+GGG + chr1_3:13037595-13037614 None:intergenic 40.0%
AAGCAAATAGGTGCTTGGAT+AGG + chr1_3:13037596-13037615 None:intergenic 40.0%
ACTTGAAGCAAATAGGTGCT+TGG + chr1_3:13037601-13037620 None:intergenic 40.0%
!! AAGTCAGCATTTTCAGGAAG+TGG - chr1_3:13037637-13037656 Msa0104850:intron 40.0%
CACATCATACTGAAAAGTGG+AGG + chr1_3:13037844-13037863 None:intergenic 40.0%
TATCACGAGGAATAGAACTC+AGG + chr1_3:13038020-13038039 None:intergenic 40.0%
GAAGATCTTTCTCCCACCAT+TGG - chr1_3:13033484-13033503 Msa0104850:three_prime_UTR 45.0%
!! GATTTTGGTATGGTCGGACT+CGG - chr1_3:13033859-13033878 Msa0104850:intron 45.0%
CGTCTGTTTGGATCTGTGTT+TGG - chr1_3:13034100-13034119 Msa0104850:intron 45.0%
GTTCACCTAACGTGAGTTTG+CGG - chr1_3:13034124-13034143 Msa0104850:intron 45.0%
GCATCTGTTTGGATATGCGT+TGG + chr1_3:13034235-13034254 None:intergenic 45.0%
CTCGAAAGTTCCCATCTCAA+GGG + chr1_3:13034288-13034307 None:intergenic 45.0%
CTTGAGATGGGAACTTTCGA+GGG - chr1_3:13034287-13034306 Msa0104850:intron 45.0%
GTTCACCAGGAGGTTTAGTT+TGG - chr1_3:13034309-13034328 Msa0104850:intron 45.0%
CCAAACCAAACTAAACCTCC+TGG + chr1_3:13034317-13034336 None:intergenic 45.0%
!! CCAGGAGGTTTAGTTTGGTT+TGG - chr1_3:13034314-13034333 Msa0104850:intron 45.0%
GGTCCACTAATGACATTTGG+TGG + chr1_3:13034436-13034455 None:intergenic 45.0%
!! GTGTTTTCTTGTTGTGCAGC+TGG - chr1_3:13035412-13035431 Msa0104850:intron 45.0%
TTAGGGCCATAGGCTATCTA+TGG + chr1_3:13035794-13035813 None:intergenic 45.0%
!! CTGACTAGTTCTACGGTACA+AGG + chr1_3:13036608-13036627 None:intergenic 45.0%
! GGGAAAACAGGATTCTAGGA+TGG - chr1_3:13036851-13036870 Msa0104850:intron 45.0%
GACTGCATCAAGATGCTTGT+TGG - chr1_3:13037107-13037126 Msa0104850:intron 45.0%
GGCTGTTACCAAAAAGGAAG+CGG - chr1_3:13037269-13037288 Msa0104850:intron 45.0%
TGTTACCAAAAAGGAAGCGG+TGG - chr1_3:13037272-13037291 Msa0104850:intron 45.0%
! AAAGTCCACCGCTTCCTTTT+TGG + chr1_3:13037280-13037299 None:intergenic 45.0%
GTGGACTTTGCAAGGCAATA+TGG - chr1_3:13037291-13037310 Msa0104850:intron 45.0%
ACATGTTCAACTCTCCTCCA+TGG - chr1_3:13037389-13037408 Msa0104850:intron 45.0%
!!! TCATGTTTTTGAGGCCATGG+AGG + chr1_3:13037406-13037425 None:intergenic 45.0%
ACTCAAGCCTGCTGAAAAGT+TGG - chr1_3:13037440-13037459 Msa0104850:intron 45.0%
AAATAGGTGCTTGGATAGGG+GGG + chr1_3:13037592-13037611 None:intergenic 45.0%
CAAATAGGTGCTTGGATAGG+GGG + chr1_3:13037593-13037612 None:intergenic 45.0%
GCAAATAGGTGCTTGGATAG+GGG + chr1_3:13037594-13037613 None:intergenic 45.0%
!! GGCTTGGTGTATCCAAAATC+TGG + chr1_3:13037700-13037719 None:intergenic 45.0%
TTTGGATACACCAAGCCTCT+TGG - chr1_3:13037703-13037722 Msa0104850:intron 45.0%
AAGTTCTTCTGCAGTCCAGA+GGG + chr1_3:13038054-13038073 None:intergenic 45.0%
! GAATTTGGTTTCTTCTGCGG+TGG - chr1_3:13038074-13038093 Msa0104850:CDS 45.0%
! TGCGGTGGTGGTAAAATAGT+CGG - chr1_3:13038089-13038108 Msa0104850:CDS 45.0%
TCGTTCCGCAAACTCACGTT+AGG + chr1_3:13034132-13034151 None:intergenic 50.0%
TCACGGAAAGACCCTTGAGA+TGG - chr1_3:13034274-13034293 Msa0104850:intron 50.0%
CACGGAAAGACCCTTGAGAT+GGG - chr1_3:13034275-13034294 Msa0104850:intron 50.0%
CCTCGAAAGTTCCCATCTCA+AGG + chr1_3:13034289-13034308 None:intergenic 50.0%
CCTTGAGATGGGAACTTTCG+AGG - chr1_3:13034286-13034305 Msa0104850:intron 50.0%
! TTCTTGTTGTGCAGCTGGAC+AGG - chr1_3:13035417-13035436 Msa0104850:intron 50.0%
! CAAGCCTTTTCCCGCTAAGT+GGG - chr1_3:13036515-13036534 Msa0104850:intron 50.0%
! AAGCCTTTTCCCGCTAAGTG+GGG - chr1_3:13036516-13036535 Msa0104850:intron 50.0%
GGTGATGCATCAGACTCTTG+CGG + chr1_3:13037773-13037792 None:intergenic 50.0%
AGTTCTTCTGCAGTCCAGAG+GGG + chr1_3:13038053-13038072 None:intergenic 50.0%
CAAGTTCTTCTGCAGTCCAG+AGG + chr1_3:13038055-13038074 None:intergenic 50.0%
! TTTGGTTTCTTCTGCGGTGG+TGG - chr1_3:13038077-13038096 Msa0104850:CDS 50.0%
ACAGACGCTTCGCCCACATT+TGG + chr1_3:13034087-13034106 None:intergenic 55.0%
! ATGTGGGCGAAGCGTCTGTT+TGG - chr1_3:13034088-13034107 Msa0104850:intron 55.0%
GGAACTTTCGAGGGTTCACC+AGG - chr1_3:13034296-13034315 Msa0104850:intron 55.0%
ACTTTCGAGGGTTCACCAGG+AGG - chr1_3:13034299-13034318 Msa0104850:intron 55.0%
GTTGTGCAGCTGGACAGGAA+AGG - chr1_3:13035422-13035441 Msa0104850:intron 55.0%
CTTAGCGGGAAAAGGCTTGG+TGG + chr1_3:13036514-13036533 None:intergenic 55.0%
CCACTTAGCGGGAAAAGGCT+TGG + chr1_3:13036517-13036536 None:intergenic 55.0%
! CCAAGCCTTTTCCCGCTAAG+TGG - chr1_3:13036514-13036533 Msa0104850:intron 55.0%
! CTTTTCCCGCTAAGTGGGGT+CGG - chr1_3:13036520-13036539 Msa0104850:intron 55.0%
ATGTAGCCGACCCCACTTAG+CGG + chr1_3:13036529-13036548 None:intergenic 55.0%
! AGGAAGCGGTGGACTTTGCA+AGG - chr1_3:13037283-13037302 Msa0104850:intron 55.0%
CACCTAGCAGCTGTTGCTCA+TGG - chr1_3:13037789-13037808 Msa0104850:intron 55.0%
CACCATGAGCAACAGCTGCT+AGG + chr1_3:13037794-13037813 None:intergenic 55.0%
GGGAATGGGCGATTATCACG+AGG + chr1_3:13038033-13038052 None:intergenic 55.0%
GATAATCGCCCATTCCCCTC+TGG - chr1_3:13038036-13038055 Msa0104850:CDS 55.0%
TCTGCAGTCCAGAGGGGAAT+GGG + chr1_3:13038047-13038066 None:intergenic 55.0%
TTCTGCAGTCCAGAGGGGAA+TGG + chr1_3:13038048-13038067 None:intergenic 55.0%
GGTCGGACTCGGAACTGATC+TGG - chr1_3:13033870-13033889 Msa0104850:intron 60.0%
CGACCCCACTTAGCGGGAAA+AGG + chr1_3:13036522-13036541 None:intergenic 60.0%
TGTAGCCGACCCCACTTAGC+GGG + chr1_3:13036528-13036547 None:intergenic 60.0%
GCTAAGTGGGGTCGGCTACA+TGG - chr1_3:13036528-13036547 Msa0104850:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13033231 13038308 13033231 ID=Msa0104850;Name=Msa0104850
chr1_3 mRNA 13033231 13038308 13033231 ID=Msa0104850-mRNA-1;Parent=Msa0104850;Name=Msa0104850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=127|1|1|1|0.83|0.71|7|469|215
chr1_3 exon 13033231 13033389 13033231 ID=Msa0104850-mRNA-1:exon:5095;Parent=Msa0104850-mRNA-1
chr1_3 exon 13033415 13033838 13033415 ID=Msa0104850-mRNA-1:exon:5094;Parent=Msa0104850-mRNA-1
chr1_3 exon 13034153 13034281 13034153 ID=Msa0104850-mRNA-1:exon:5093;Parent=Msa0104850-mRNA-1
chr1_3 exon 13034394 13034515 13034394 ID=Msa0104850-mRNA-1:exon:5092;Parent=Msa0104850-mRNA-1
chr1_3 exon 13036043 13036108 13036043 ID=Msa0104850-mRNA-1:exon:5091;Parent=Msa0104850-mRNA-1
chr1_3 exon 13036613 13036681 13036613 ID=Msa0104850-mRNA-1:exon:5090;Parent=Msa0104850-mRNA-1
chr1_3 exon 13038034 13038308 13038034 ID=Msa0104850-mRNA-1:exon:5089;Parent=Msa0104850-mRNA-1
chr1_3 five_prime_UTR 13038182 13038308 13038182 ID=Msa0104850-mRNA-1:five_prime_utr;Parent=Msa0104850-mRNA-1
chr1_3 CDS 13038034 13038181 13038034 ID=Msa0104850-mRNA-1:cds;Parent=Msa0104850-mRNA-1
chr1_3 CDS 13036613 13036681 13036613 ID=Msa0104850-mRNA-1:cds;Parent=Msa0104850-mRNA-1
chr1_3 CDS 13036043 13036108 13036043 ID=Msa0104850-mRNA-1:cds;Parent=Msa0104850-mRNA-1
chr1_3 CDS 13034394 13034515 13034394 ID=Msa0104850-mRNA-1:cds;Parent=Msa0104850-mRNA-1
chr1_3 CDS 13034153 13034281 13034153 ID=Msa0104850-mRNA-1:cds;Parent=Msa0104850-mRNA-1
chr1_3 CDS 13033725 13033838 13033725 ID=Msa0104850-mRNA-1:cds;Parent=Msa0104850-mRNA-1
chr1_3 three_prime_UTR 13033415 13033724 13033415 ID=Msa0104850-mRNA-1:three_prime_utr;Parent=Msa0104850-mRNA-1
chr1_3 three_prime_UTR 13033231 13033389 13033231 ID=Msa0104850-mRNA-1:three_prime_utr;Parent=Msa0104850-mRNA-1
Gene Sequence

>Msa0104850

ATGGATGTTTCTTCTTCTTCGGCGAGTAACGCCGCTGAATTCGATTACTTGTTCAAGCTTCTTATGATTGGTGATTCTGGTGTTGGAAAAAGCACGTTGCTTCTTCGATTCACTTCTGATAACTTCGAAGATCTTTCTCCCACCATTGGTGTAGACTTCAAAGTTAAATATGTTACACTTGGTGGAAAAAAGTTAAAACTTGCTATATGGGACACAGCTGGACAGGAAAGGTTTAGAACACTTACTGGTTCTTATTATAGAGGTGCACAAGGAATAATTATGGTATACGACGTAACGCGACGTGAAACTTTTACAAATCTATCTGATATATGGGCTAAAGAAATTGACTTATACTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGAAAGTGAAAGGGCTGTTACCAAAAAGGAAGCGGTGGACTTTGCAAGGCAATATGGGTGCCTCTATACTGAATGCAGTGCTAAAACTCGAGTAAATGTTGAGCAGTGTTTTGAGGAGCTTGTAATGAAGATTTTGGATACACCAAGCCTCTTGGCTGAGGGCTCATCTGGTGTGAAAAAGAACATCTTCAAGCAGAAACCGCAAGAGTCTGATGCATCACCTAGCAGCTGTTGCTCATGGTGA
Protein sequence

>Msa0104850

MDVSSSSASNAAEFDYLFKLLMIGDSGVGKSTLLLRFTSDNFEDLSPTIGVDFKVKYVTLGGKKLKLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERAVTKKEAVDFARQYGCLYTECSAKTRVNVEQCFEELVMKILDTPSLLAEGSSGVKKNIFKQKPQESDASPSSCCSW*