AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457160 MtrunA17_Chr6g0451531 85.517 580 77 5 1 576 1 577 0.0 1003
Msa1457160 MtrunA17_Chr6g0451541 84.283 579 87 3 1 576 1 578 0.0 996
Msa1457160 MtrunA17_Chr6g0451561 74.829 584 130 6 1 576 1 575 0.0 862
Msa1457160 MtrunA17_Chr3g0107671 64.948 582 191 5 1 576 1 575 0.0 746
Msa1457160 MtrunA17_Chr6g0451511 56.655 586 233 11 1 575 1 576 0.0 605
Msa1457160 MtrunA17_Chr3g0107661 64.467 197 66 3 1 196 1 194 1.14e-72 233
Msa1457160 MtrunA17_Chr3g0107651 67.883 137 42 1 280 416 2 136 9.81e-58 189
Msa1457160 MtrunA17_Chr8g0384621 26.641 518 300 17 103 547 101 611 3.72e-35 140
Msa1457160 MtrunA17_Chr3g0118251 25.348 359 210 15 208 541 275 600 1.23e-19 92.8
Msa1457160 MtrunA17_Chr3g0118541 24.110 365 204 17 208 541 286 608 1.80e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457160 AT5G14930.2 39.106 537 259 18 45 569 54 534 8.63e-104 323
Msa1457160 AT3G52430.1 27.483 433 271 10 134 547 112 520 1.60e-41 157
Msa1457160 AT5G14930.3 43.850 187 96 5 45 230 54 232 7.11e-38 140
Msa1457160 AT3G48080.1 26.632 383 188 19 208 540 264 603 6.10e-12 68.9

Find 87 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATTTCATTCAGTTTCT+TGG 0.135337 tig0038499:-17356 None:intergenic
GAATTTGAGGACTATGTTTA+TGG 0.172177 tig0038499:+17883 Msa1457160:CDS
TCAATTATTACATACAATTT+AGG 0.197479 tig0038499:-14638 None:intergenic
TGAAAATCCTGAATCAAATT+TGG 0.201287 tig0038499:+16419 Msa1457160:CDS
GGAGGATTACAAAGCAATTA+AGG 0.222925 tig0038499:+17972 Msa1457160:CDS
TGACTATAGATTCTTGCTTT+TGG 0.226808 tig0038499:+17779 Msa1457160:CDS
GAAGTGAGTTATTGGAAATA+TGG 0.255216 tig0038499:-14552 None:intergenic
GTATCTCCGTTGATTGTTAC+TGG 0.261010 tig0038499:+16126 Msa1457160:CDS
ATTATTTCCAAATTTGATTC+AGG 0.262197 tig0038499:-16426 None:intergenic
AGAAGAGGTATTGAATAAAT+TGG 0.271295 tig0038499:+17858 Msa1457160:CDS
TGAACCTTATTGATAAATAA+TGG 0.275608 tig0038499:+18157 Msa1457160:three_prime_UTR
GCTTCCATTATTTATCAATA+AGG 0.280610 tig0038499:-18161 None:intergenic
CCATATCACGTAGTTCTAAT+TGG 0.302095 tig0038499:+16280 Msa1457160:CDS
TTCCAATCTTCAAAGTGATT+TGG 0.309557 tig0038499:+14948 Msa1457160:CDS
CTTATATGTTGTAATAAATC+AGG 0.322479 tig0038499:+18109 Msa1457160:three_prime_UTR
AGAGAAAGAAGGATTCTTCT+TGG 0.330255 tig0038499:-15025 None:intergenic
GAATAAATTGGTTGAATTTG+AGG 0.332286 tig0038499:+17870 Msa1457160:CDS
TTATTATGCAGCAAACATTA+AGG 0.337212 tig0038499:-18078 None:intergenic
CCAATTAGAACTACGTGATA+TGG 0.350866 tig0038499:-16280 None:intergenic
AAAGATTAAGCTGTATGGTT+TGG 0.357357 tig0038499:+18041 Msa1457160:CDS
AACCAAATCACTTTGAAGAT+TGG 0.363073 tig0038499:-14950 None:intergenic
AATGCAGCGCCTTCTCTTTG+AGG 0.373682 tig0038499:-17547 None:intergenic
GTAACAATCAACGGAGATAC+TGG 0.376011 tig0038499:-16123 None:intergenic
ATGTGATGGAAGTGAGTTAT+TGG 0.376355 tig0038499:-14560 None:intergenic
AAGATTAAGCTGTATGGTTT+GGG 0.377569 tig0038499:+18042 Msa1457160:CDS
CTATGTTTATGGTTTGCTTA+AGG 0.380016 tig0038499:+17894 Msa1457160:CDS
CCGTTGATTGTTACTGGAAA+AGG 0.381611 tig0038499:+16132 Msa1457160:CDS
ATTTCACATACCAGAATGTT+TGG 0.383284 tig0038499:-16633 None:intergenic
AGGATTGACACCAAACATTC+TGG 0.383720 tig0038499:+16623 Msa1457160:CDS
ATCCAAACACTTCAAAACTT+TGG 0.383816 tig0038499:+17678 Msa1457160:CDS
ACTTCAAAACTTTGGAAGAA+TGG 0.388337 tig0038499:+17686 Msa1457160:CDS
ATTGTTACTGGAAAAGGTCT+TGG 0.395512 tig0038499:+16138 Msa1457160:CDS
GGATTCAAATTAGATGATTA+CGG 0.396102 tig0038499:+16483 Msa1457160:CDS
CACAATTTATTGGGAAAAGA+TGG 0.397786 tig0038499:+17504 Msa1457160:CDS
ATCACAAACTACATGCCTTT+CGG 0.398239 tig0038499:+16357 Msa1457160:CDS
GCTTGATGAGTTGAAATCTA+AGG 0.406363 tig0038499:+15092 Msa1457160:CDS
CGTCCACTATGCGTCACGTT+TGG 0.419264 tig0038499:+16222 Msa1457160:CDS
CTTTGCCTCAAGAAAATCTC+AGG 0.419803 tig0038499:-17931 None:intergenic
CAAAACTTTGGAAGAATGGC+TGG 0.443782 tig0038499:+17690 Msa1457160:CDS
ATTTCATTCAGTTTCTTGGA+TGG 0.448594 tig0038499:-17352 None:intergenic
AAGGCTATAATAGTCAAATC+AGG 0.452500 tig0038499:-14907 None:intergenic
GAGGATTACAAAGCAATTAA+GGG 0.468996 tig0038499:+17973 Msa1457160:CDS
ACGTTTGGTTCACCTCTTGT+CGG 0.482854 tig0038499:+16237 Msa1457160:CDS
CGTTATCGCTGGCTCTTCGG+TGG 0.483152 tig0038499:+17571 Msa1457160:CDS
CGGTGACAAGAAATTGCAAC+AGG 0.487244 tig0038499:+16257 Msa1457160:CDS
AGAATCTGTGGTAGCTTCAA+AGG 0.497067 tig0038499:-14926 None:intergenic
TTAGGTTGTGCCATGGTGCT+AGG 0.500658 tig0038499:-14620 None:intergenic
GAATGAAATGAAGCGACATA+TGG 0.505636 tig0038499:+17366 Msa1457160:CDS
GTTACTGGAAAAGGTCTTGG+AGG 0.510890 tig0038499:+16141 Msa1457160:CDS
AAAATGCATGGACAAAATCA+AGG 0.512387 tig0038499:+16462 Msa1457160:CDS
GACATATGGCGCAACTTGAA+TGG 0.517973 tig0038499:+17380 Msa1457160:CDS
GTTACAAATGATGATGGTGT+TGG 0.525849 tig0038499:+14853 Msa1457160:CDS
AAGTGAGTTATTGGAAATAT+GGG 0.531544 tig0038499:-14551 None:intergenic
GACATAGTTACAAATGATGA+TGG 0.538208 tig0038499:+14847 Msa1457160:CDS
GCTGCAAAGATTAAGCTGTA+TGG 0.541180 tig0038499:+18036 Msa1457160:CDS
TAGAAGCTTATGTTATGTGA+TGG 0.544167 tig0038499:-14574 None:intergenic
GAACTGAAGCCTCAAAGAGA+AGG 0.549949 tig0038499:+17538 Msa1457160:CDS
TGGAACTACATATAGAAGAA+TGG 0.555344 tig0038499:+17591 Msa1457160:CDS
AAAGTAGCTATATGAGTTGG+TGG 0.555896 tig0038499:+17950 Msa1457160:CDS
GGCAAAGTAGCTATATGAGT+TGG 0.559632 tig0038499:+17947 Msa1457160:CDS
GAACCAAACGTGACGCATAG+TGG 0.562977 tig0038499:-16225 None:intergenic
GTGATGAATAGCCTTGGAAG+AGG 0.565611 tig0038499:-16339 None:intergenic
CTTGCAATGATCCTCTTCCA+AGG 0.569151 tig0038499:+16328 Msa1457160:CDS
AGTTTGCAGTTGCAAGCACT+AGG 0.576986 tig0038499:+16603 Msa1457160:CDS
CATTCAGATTCACTTGTGAT+CGG 0.577931 tig0038499:+16576 Msa1457160:CDS
TTGAAGATTGGAAGAATCTG+TGG 0.587548 tig0038499:-14938 None:intergenic
GAATGAGTCCCATCTCCAGC+CGG 0.588363 tig0038499:-16558 None:intergenic
TAGTTTGTGATGAATAGCCT+TGG 0.589154 tig0038499:-16345 None:intergenic
ATGATGGTGTTGGATTGAGT+TGG 0.591111 tig0038499:+14863 Msa1457160:CDS
ATTGCTCAATACTATAGAGA+TGG 0.594666 tig0038499:+17628 Msa1457160:CDS
GTGCTATTCAGAGAGAAAGA+AGG 0.596253 tig0038499:-15036 None:intergenic
CAAAAGAGAAATGTTCCGAA+AGG 0.596999 tig0038499:-16372 None:intergenic
AATTTCTTGTCACCGACAAG+AGG 0.597556 tig0038499:-16249 None:intergenic
ATACAATTTAGGTTGTGCCA+TGG 0.603766 tig0038499:-14627 None:intergenic
TATGATTGCAGATTTAGCAG+TGG 0.609923 tig0038499:+14748 Msa1457160:intron
GCTCAATACTATAGAGATGG+TGG 0.610937 tig0038499:+17631 Msa1457160:CDS
TAGTTCAAGTAGAAAGAATG+TGG 0.614312 tig0038499:+17747 Msa1457160:CDS
ATATCACTATTAGACAACAT+TGG 0.614599 tig0038499:+16186 Msa1457160:CDS
CGAAGTAAAAGACAAAGAAG+AGG 0.622916 tig0038499:+17843 Msa1457160:CDS
GTGACACTAAGCAAAATGCA+TGG 0.630976 tig0038499:+16450 Msa1457160:CDS
GAGTTATTGGAAATATGGGA+TGG 0.635161 tig0038499:-14547 None:intergenic
TTTGCCTCAAGAAAATCTCA+GGG 0.641885 tig0038499:-17930 None:intergenic
TAGCTATATGAGTTGGTGGG+AGG 0.644722 tig0038499:+17954 Msa1457160:CDS
AAGTAGCTATATGAGTTGGT+GGG 0.646632 tig0038499:+17951 Msa1457160:CDS
TAGTATTGAGCAATAACTAG+TGG 0.657631 tig0038499:-17619 None:intergenic
ATTTAATCTTCCTAGCACCA+TGG 0.668100 tig0038499:+14610 Msa1457160:exon
TTGCCTCAAGAAAATCTCAG+GGG 0.763292 tig0038499:-17929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAGTTAATTTTGTATT+TGG + tig0038499:14723-14742 Msa1457160:intron 10.0%
!! TCAATTATTACATACAATTT+AGG - tig0038499:14641-14660 None:intergenic 15.0%
!! GAATTCGTAATAAATAATAA+TGG - tig0038499:14672-14691 None:intergenic 15.0%
!! AAAATAATCCAAAAAGATAA+GGG - tig0038499:15124-15143 None:intergenic 15.0%
!! AAAAATAATCCAAAAAGATA+AGG - tig0038499:15125-15144 None:intergenic 15.0%
!! AATATCTTCAATTAATATCT+AGG - tig0038499:15398-15417 None:intergenic 15.0%
!!! TTATCTTTTATTGTTAAAAG+TGG + tig0038499:15960-15979 Msa1457160:intron 15.0%
!! AGATAAACAATTTAATTAAG+TGG + tig0038499:16764-16783 Msa1457160:intron 15.0%
!! AACAAAAGATAAAATAAAGT+CGG + tig0038499:16838-16857 Msa1457160:intron 15.0%
!!! AAAAAAAGAAGTATAGTCTT+TGG - tig0038499:14479-14498 None:intergenic 20.0%
!! ATCAAATCCTTAAAAAAACA+TGG + tig0038499:14800-14819 Msa1457160:CDS 20.0%
!!! TAACATTCCATGTTTTTTTA+AGG - tig0038499:14810-14829 None:intergenic 20.0%
!!! CTTTTTGGATTATTTTTTTG+AGG + tig0038499:15128-15147 Msa1457160:intron 20.0%
!! TTGTTGTGTAAAATCTAAAA+TGG + tig0038499:15213-15232 Msa1457160:intron 20.0%
!! AGACACAAATCAAAAAATAA+CGG + tig0038499:15337-15356 Msa1457160:intron 20.0%
!! AAATCACTAGTTATTCAAAA+TGG - tig0038499:15745-15764 None:intergenic 20.0%
!!! TTATCCTAAACACTATTTTA+AGG - tig0038499:15778-15797 None:intergenic 20.0%
!!! TAGTGTTTAGGATAAAAATA+TGG + tig0038499:15783-15802 Msa1457160:intron 20.0%
!!! TTTAGGATAAAAATATGGAA+AGG + tig0038499:15788-15807 Msa1457160:intron 20.0%
!! TTAGGATAAAAATATGGAAA+GGG + tig0038499:15789-15808 Msa1457160:intron 20.0%
!! GATAAAATAAAGAGACATTA+TGG - tig0038499:15945-15964 None:intergenic 20.0%
!! ATTATTTCCAAATTTGATTC+AGG - tig0038499:16429-16448 None:intergenic 20.0%
!! TCATTTAATTAAACCACATT+AGG + tig0038499:16685-16704 Msa1457160:intron 20.0%
!! TATAGAAATAACTTACACAT+AGG - tig0038499:16819-16838 None:intergenic 20.0%
!!! AATCAAAATTGACTTATTTG+AGG - tig0038499:16972-16991 None:intergenic 20.0%
!! AAAACAAAAAATCTTCACAT+AGG + tig0038499:17412-17431 Msa1457160:CDS 20.0%
!! AAACAAAAAATCTTCACATA+GGG + tig0038499:17413-17432 Msa1457160:CDS 20.0%
!! ATAAAAAGCTCACAATTTAT+TGG + tig0038499:17494-17513 Msa1457160:CDS 20.0%
!! TAAAAAGCTCACAATTTATT+GGG + tig0038499:17495-17514 Msa1457160:CDS 20.0%
!!! TGAACTATTTGATTCATTTT+CGG - tig0038499:17734-17753 None:intergenic 20.0%
!! CTTATATGTTGTAATAAATC+AGG + tig0038499:18109-18128 Msa1457160:three_prime_UTR 20.0%
!! TGAACCTTATTGATAAATAA+TGG + tig0038499:18157-18176 Msa1457160:three_prime_UTR 20.0%
!!! AGACTATACTTCTTTTTTTG+AGG + tig0038499:14480-14499 Msa1457160:five_prime_UTR 25.0%
!!! GACTATACTTCTTTTTTTGA+GGG + tig0038499:14481-14500 Msa1457160:five_prime_UTR 25.0%
! ATGGTATATTATATGGTCAA+TGG - tig0038499:14531-14550 None:intergenic 25.0%
! ATATGGGATGGTATATTATA+TGG - tig0038499:14538-14557 None:intergenic 25.0%
! AAGTGAGTTATTGGAAATAT+GGG - tig0038499:14554-14573 None:intergenic 25.0%
! TCACTAAATTTGCAAGAAAA+TGG - tig0038499:15193-15212 None:intergenic 25.0%
! GACACAAATCAAAAAATAAC+GGG + tig0038499:15338-15357 Msa1457160:intron 25.0%
! TATGCCTTAAAATAGTGTTT+AGG + tig0038499:15771-15790 Msa1457160:intron 25.0%
! TAGGATAAAAATATGGAAAG+GGG + tig0038499:15790-15809 Msa1457160:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG - tig0038499:15921-15940 None:intergenic 25.0%
!! ACAATCTTAATGCAGATTTT+AGG + tig0038499:16093-16112 Msa1457160:intron 25.0%
! ATATCACTATTAGACAACAT+TGG + tig0038499:16186-16205 Msa1457160:CDS 25.0%
! TGAAAATCCTGAATCAAATT+TGG + tig0038499:16419-16438 Msa1457160:CDS 25.0%
! GGATTCAAATTAGATGATTA+CGG + tig0038499:16483-16502 Msa1457160:CDS 25.0%
!!! TTTTAAGGATGTTTTTATGC+CGG + tig0038499:16539-16558 Msa1457160:CDS 25.0%
! TAAACAAAACTAACCTAATG+TGG - tig0038499:16701-16720 None:intergenic 25.0%
!!! TTCATTAGAGCTTGTTAATA+AGG + tig0038499:16732-16751 Msa1457160:intron 25.0%
! AAACTATCCTTAAGATCTTA+TGG + tig0038499:16893-16912 Msa1457160:intron 25.0%
!!! CTCATTTCTAAAATTGACTT+GGG + tig0038499:17233-17252 Msa1457160:intron 25.0%
!! CAAATAATGTCTTCTTTTGA+CGG - tig0038499:17330-17349 None:intergenic 25.0%
!!! AGAAGAGGTATTGAATAAAT+TGG + tig0038499:17858-17877 Msa1457160:CDS 25.0%
! GAATAAATTGGTTGAATTTG+AGG + tig0038499:17870-17889 Msa1457160:CDS 25.0%
! TTATTATGCAGCAAACATTA+AGG - tig0038499:18081-18100 None:intergenic 25.0%
! GCTTCCATTATTTATCAATA+AGG - tig0038499:18164-18183 None:intergenic 25.0%
GAAGTGAGTTATTGGAAATA+TGG - tig0038499:14555-14574 None:intergenic 30.0%
TAGAAGCTTATGTTATGTGA+TGG - tig0038499:14577-14596 None:intergenic 30.0%
GACATAGTTACAAATGATGA+TGG + tig0038499:14847-14866 Msa1457160:CDS 30.0%
AAGGCTATAATAGTCAAATC+AGG - tig0038499:14910-14929 None:intergenic 30.0%
TTCCAATCTTCAAAGTGATT+TGG + tig0038499:14948-14967 Msa1457160:CDS 30.0%
! AACCAAATCACTTTGAAGAT+TGG - tig0038499:14953-14972 None:intergenic 30.0%
! GGTATTTTCCCTTATCTTTT+TGG + tig0038499:15113-15132 Msa1457160:intron 30.0%
CTAAAATGGTCAATGATTCA+TGG + tig0038499:15227-15246 Msa1457160:intron 30.0%
!! CTATAAAAGGAAAGTGTTGT+TGG + tig0038499:15370-15389 Msa1457160:intron 30.0%
ACTTGTGTAAGCTTATTTAC+CGG + tig0038499:15835-15854 Msa1457160:intron 30.0%
CAACTTATGGACATATCATA+AGG - tig0038499:15908-15927 None:intergenic 30.0%
CAGTCATCTTGTAACAATAA+TGG + tig0038499:16006-16025 Msa1457160:intron 30.0%
! TATGCATATTGCTAGTTTCT+AGG + tig0038499:16035-16054 Msa1457160:intron 30.0%
GCATTAAGATTGTTGCATAA+AGG - tig0038499:16086-16105 None:intergenic 30.0%
AAAATGCATGGACAAAATCA+AGG + tig0038499:16462-16481 Msa1457160:CDS 30.0%
TAAAAAATGCTTTACGTCTG+AGG - tig0038499:16524-16543 None:intergenic 30.0%
!!! CAGACGTAAAGCATTTTTTA+AGG + tig0038499:16524-16543 Msa1457160:CDS 30.0%
ATTTCACATACCAGAATGTT+TGG - tig0038499:16636-16655 None:intergenic 30.0%
CTTGTTTCCATAAGATCTTA+AGG - tig0038499:16903-16922 None:intergenic 30.0%
TTAAACACAACTTCTTGTCA+AGG - tig0038499:17129-17148 None:intergenic 30.0%
!! CCAAGTCAATTTTAGAAATG+AGG - tig0038499:17235-17254 None:intergenic 30.0%
!! CCTCATTTCTAAAATTGACT+TGG + tig0038499:17232-17251 Msa1457160:intron 30.0%
ATTTCATTCAGTTTCTTGGA+TGG - tig0038499:17355-17374 None:intergenic 30.0%
CTTCATTTCATTCAGTTTCT+TGG - tig0038499:17359-17378 None:intergenic 30.0%
CACAATTTATTGGGAAAAGA+TGG + tig0038499:17504-17523 Msa1457160:CDS 30.0%
TGGAACTACATATAGAAGAA+TGG + tig0038499:17591-17610 Msa1457160:CDS 30.0%
! TAGTATTGAGCAATAACTAG+TGG - tig0038499:17622-17641 None:intergenic 30.0%
ATTGCTCAATACTATAGAGA+TGG + tig0038499:17628-17647 Msa1457160:CDS 30.0%
ATCCAAACACTTCAAAACTT+TGG + tig0038499:17678-17697 Msa1457160:CDS 30.0%
!!! TTCCAAAGTTTTGAAGTGTT+TGG - tig0038499:17683-17702 None:intergenic 30.0%
! ACTTCAAAACTTTGGAAGAA+TGG + tig0038499:17686-17705 Msa1457160:CDS 30.0%
TAGTTCAAGTAGAAAGAATG+TGG + tig0038499:17747-17766 Msa1457160:CDS 30.0%
! TGACTATAGATTCTTGCTTT+TGG + tig0038499:17779-17798 Msa1457160:CDS 30.0%
!! GACTATAGATTCTTGCTTTT+GGG + tig0038499:17780-17799 Msa1457160:CDS 30.0%
GAATTTGAGGACTATGTTTA+TGG + tig0038499:17883-17902 Msa1457160:CDS 30.0%
!! CTATGTTTATGGTTTGCTTA+AGG + tig0038499:17894-17913 Msa1457160:CDS 30.0%
GAGGATTACAAAGCAATTAA+GGG + tig0038499:17973-17992 Msa1457160:CDS 30.0%
AAAGATTAAGCTGTATGGTT+TGG + tig0038499:18041-18060 Msa1457160:CDS 30.0%
AAGATTAAGCTGTATGGTTT+GGG + tig0038499:18042-18061 Msa1457160:CDS 30.0%
GAGTTATTGGAAATATGGGA+TGG - tig0038499:14550-14569 None:intergenic 35.0%
! ATGTGATGGAAGTGAGTTAT+TGG - tig0038499:14563-14582 None:intergenic 35.0%
ATTTAATCTTCCTAGCACCA+TGG + tig0038499:14610-14629 Msa1457160:exon 35.0%
!! ATACAATTTAGGTTGTGCCA+TGG - tig0038499:14630-14649 None:intergenic 35.0%
TATGATTGCAGATTTAGCAG+TGG + tig0038499:14748-14767 Msa1457160:intron 35.0%
!! GTTACAAATGATGATGGTGT+TGG + tig0038499:14853-14872 Msa1457160:CDS 35.0%
TTGAAGATTGGAAGAATCTG+TGG - tig0038499:14941-14960 None:intergenic 35.0%
AGAGAAAGAAGGATTCTTCT+TGG - tig0038499:15028-15047 None:intergenic 35.0%
! GCTTGATGAGTTGAAATCTA+AGG + tig0038499:15092-15111 Msa1457160:CDS 35.0%
CGGGAGTTAGATTCTATAAA+AGG + tig0038499:15357-15376 Msa1457160:intron 35.0%
!! AGCACCAAAAGCTCTAAATT+TGG + tig0038499:15438-15457 Msa1457160:intron 35.0%
!! AGGTCCAAATTTAGAGCTTT+TGG - tig0038499:15445-15464 None:intergenic 35.0%
ATTTGGACCTCAAAATATCG+AGG + tig0038499:15455-15474 Msa1457160:intron 35.0%
TTCTTGCACACCATCATAAT+CGG + tig0038499:15494-15513 Msa1457160:intron 35.0%
AACCCTTTACTCTTTGCTTT+CGG - tig0038499:15547-15566 None:intergenic 35.0%
TTCGTCTGATCTTAATCCAA+TGG + tig0038499:15593-15612 Msa1457160:intron 35.0%
CATTCACACAGTTAGTGTAT+CGG - tig0038499:15622-15641 None:intergenic 35.0%
CGTATGCAAAACAGATGAAA+TGG - tig0038499:15670-15689 None:intergenic 35.0%
ACTGTTTGAGAGAGCTTATA+TGG + tig0038499:15877-15896 Msa1457160:intron 35.0%
TGTTACAAGATGACTGTGTT+TGG - tig0038499:16002-16021 None:intergenic 35.0%
! CCTTTTCCAGTAACAATCAA+CGG - tig0038499:16135-16154 None:intergenic 35.0%
ATTGTTACTGGAAAAGGTCT+TGG + tig0038499:16138-16157 Msa1457160:CDS 35.0%
CCAATTAGAACTACGTGATA+TGG - tig0038499:16283-16302 None:intergenic 35.0%
!! CCATATCACGTAGTTCTAAT+TGG + tig0038499:16280-16299 Msa1457160:CDS 35.0%
! TAGTTTGTGATGAATAGCCT+TGG - tig0038499:16348-16367 None:intergenic 35.0%
ATCACAAACTACATGCCTTT+CGG + tig0038499:16357-16376 Msa1457160:CDS 35.0%
CAAAAGAGAAATGTTCCGAA+AGG - tig0038499:16375-16394 None:intergenic 35.0%
CATTCAGATTCACTTGTGAT+CGG + tig0038499:16576-16595 Msa1457160:CDS 35.0%
CACATAGGCACTTATAAGAT+AGG - tig0038499:16804-16823 None:intergenic 35.0%
! TAATGTCTTCTTTTGACGGA+TGG - tig0038499:17326-17345 None:intergenic 35.0%
GAATGAAATGAAGCGACATA+TGG + tig0038499:17366-17385 Msa1457160:CDS 35.0%
CGAAGTAAAAGACAAAGAAG+AGG + tig0038499:17843-17862 Msa1457160:CDS 35.0%
TTTGCCTCAAGAAAATCTCA+GGG - tig0038499:17933-17952 None:intergenic 35.0%
! AAAGTAGCTATATGAGTTGG+TGG + tig0038499:17950-17969 Msa1457160:CDS 35.0%
!! AAGTAGCTATATGAGTTGGT+GGG + tig0038499:17951-17970 Msa1457160:CDS 35.0%
GGAGGATTACAAAGCAATTA+AGG + tig0038499:17972-17991 Msa1457160:CDS 35.0%
! ATGATGGTGTTGGATTGAGT+TGG + tig0038499:14863-14882 Msa1457160:CDS 40.0%
AGAATCTGTGGTAGCTTCAA+AGG - tig0038499:14929-14948 None:intergenic 40.0%
! GTGCTATTCAGAGAGAAAGA+AGG - tig0038499:15039-15058 None:intergenic 40.0%
!!! AGAGCTTTTGGTGCTTCATT+TGG - tig0038499:15433-15452 None:intergenic 40.0%
GCAAGAAGATCAACAACACA+TGG - tig0038499:15481-15500 None:intergenic 40.0%
CCAAAGATCAAACGATCACA+TGG - tig0038499:15523-15542 None:intergenic 40.0%
CCATGTGATCGTTTGATCTT+TGG + tig0038499:15520-15539 Msa1457160:intron 40.0%
GTCCGAAAGCAAAGAGTAAA+GGG + tig0038499:15542-15561 Msa1457160:intron 40.0%
! GTTAGTGTATCGGTAACCAT+TGG - tig0038499:15612-15631 None:intergenic 40.0%
! GAAATGGATTCGTTGCAGTT+GGG - tig0038499:15654-15673 None:intergenic 40.0%
! TGAAATGGATTCGTTGCAGT+TGG - tig0038499:15655-15674 None:intergenic 40.0%
TCTCTCAAACAGTCTCACAA+AGG - tig0038499:15870-15889 None:intergenic 40.0%
GTAACAATCAACGGAGATAC+TGG - tig0038499:16126-16145 None:intergenic 40.0%
! GTATCTCCGTTGATTGTTAC+TGG + tig0038499:16126-16145 Msa1457160:CDS 40.0%
! CCGTTGATTGTTACTGGAAA+AGG + tig0038499:16132-16151 Msa1457160:CDS 40.0%
AATTTCTTGTCACCGACAAG+AGG - tig0038499:16252-16271 None:intergenic 40.0%
GTGACACTAAGCAAAATGCA+TGG + tig0038499:16450-16469 Msa1457160:CDS 40.0%
AGGATTGACACCAAACATTC+TGG + tig0038499:16623-16642 Msa1457160:CDS 40.0%
GCTCAATACTATAGAGATGG+TGG + tig0038499:17631-17650 Msa1457160:CDS 40.0%
! CAAAACTTTGGAAGAATGGC+TGG + tig0038499:17690-17709 Msa1457160:CDS 40.0%
TTGCCTCAAGAAAATCTCAG+GGG - tig0038499:17932-17951 None:intergenic 40.0%
CTTTGCCTCAAGAAAATCTC+AGG - tig0038499:17934-17953 None:intergenic 40.0%
GGCAAAGTAGCTATATGAGT+TGG + tig0038499:17947-17966 Msa1457160:CDS 40.0%
GCTGCAAAGATTAAGCTGTA+TGG + tig0038499:18036-18055 Msa1457160:CDS 40.0%
! CACATGGCCTCGATATTTTG+AGG - tig0038499:15465-15484 None:intergenic 45.0%
TTGCACACCATCATAATCGG+AGG + tig0038499:15497-15516 Msa1457160:intron 45.0%
GGTCCGAAAGCAAAGAGTAA+AGG + tig0038499:15541-15560 Msa1457160:intron 45.0%
GTTACTGGAAAAGGTCTTGG+AGG + tig0038499:16141-16160 Msa1457160:CDS 45.0%
! ACGTTTGGTTCACCTCTTGT+CGG + tig0038499:16237-16256 Msa1457160:CDS 45.0%
CGGTGACAAGAAATTGCAAC+AGG + tig0038499:16257-16276 Msa1457160:CDS 45.0%
CTTGCAATGATCCTCTTCCA+AGG + tig0038499:16328-16347 Msa1457160:CDS 45.0%
! GTGATGAATAGCCTTGGAAG+AGG - tig0038499:16342-16361 None:intergenic 45.0%
!! AAGGATGTTTTTATGCCGGC+TGG + tig0038499:16543-16562 Msa1457160:CDS 45.0%
!! TTTTTATGCCGGCTGGAGAT+GGG + tig0038499:16550-16569 Msa1457160:CDS 45.0%
AGTTTGCAGTTGCAAGCACT+AGG + tig0038499:16603-16622 Msa1457160:CDS 45.0%
CCTTCTTCGCTGTATTTGAC+CGG + tig0038499:17051-17070 Msa1457160:intron 45.0%
CTTCTTCGCTGTATTTGACC+GGG + tig0038499:17052-17071 Msa1457160:intron 45.0%
GACATATGGCGCAACTTGAA+TGG + tig0038499:17380-17399 Msa1457160:CDS 45.0%
GAACTGAAGCCTCAAAGAGA+AGG + tig0038499:17538-17557 Msa1457160:CDS 45.0%
!! TTTCGTTATCGCTGGCTCTT+CGG + tig0038499:17568-17587 Msa1457160:CDS 45.0%
! CTTTTGGGCACATGTTGAAG+AGG + tig0038499:17795-17814 Msa1457160:CDS 45.0%
! TGTCCCCTGAGATTTTCTTG+AGG + tig0038499:17926-17945 Msa1457160:CDS 45.0%
!! TAGCTATATGAGTTGGTGGG+AGG + tig0038499:17954-17973 Msa1457160:CDS 45.0%
! TTAGGTTGTGCCATGGTGCT+AGG - tig0038499:14623-14642 None:intergenic 50.0%
CACATGGCCTCCGATTATGA+TGG - tig0038499:15507-15526 None:intergenic 50.0%
CTCACAAAGGCTTACGTCAC+CGG - tig0038499:15857-15876 None:intergenic 50.0%
GAACCAAACGTGACGCATAG+TGG - tig0038499:16228-16247 None:intergenic 50.0%
!! GTTTTTATGCCGGCTGGAGA+TGG + tig0038499:16549-16568 Msa1457160:CDS 50.0%
CCGGTCAAATACAGCGAAGA+AGG - tig0038499:17054-17073 None:intergenic 50.0%
GACCGGGATTATCTCGATCT+TGG + tig0038499:17068-17087 Msa1457160:intron 50.0%
CGCCAAGATCGAGATAATCC+CGG - tig0038499:17073-17092 None:intergenic 50.0%
AATGCAGCGCCTTCTCTTTG+AGG - tig0038499:17550-17569 None:intergenic 50.0%
CGTCCACTATGCGTCACGTT+TGG + tig0038499:16222-16241 Msa1457160:CDS 55.0%
GAATGAGTCCCATCTCCAGC+CGG - tig0038499:16561-16580 None:intergenic 55.0%
GCGCTGCATTTCGTTATCGC+TGG + tig0038499:17560-17579 Msa1457160:CDS 55.0%
!! CGTTATCGCTGGCTCTTCGG+TGG + tig0038499:17571-17590 Msa1457160:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0038499 gene 14469 18206 14469 ID=Msa1457160;Name=Msa1457160
tig0038499 mRNA 14469 18206 14469 ID=Msa1457160-mRNA-1;Parent=Msa1457160;Name=Msa1457160-mRNA-1;_AED=0.21;_eAED=0.21;_QI=138|1|1|1|0.75|0.6|5|123|576
tig0038499 exon 14469 14520 14469 ID=Msa1457160-mRNA-1:exon:21015;Parent=Msa1457160-mRNA-1
tig0038499 exon 14543 14645 14543 ID=Msa1457160-mRNA-1:exon:21016;Parent=Msa1457160-mRNA-1
tig0038499 exon 14759 15113 14759 ID=Msa1457160-mRNA-1:exon:21017;Parent=Msa1457160-mRNA-1
tig0038499 exon 16108 16644 16108 ID=Msa1457160-mRNA-1:exon:21018;Parent=Msa1457160-mRNA-1
tig0038499 exon 17262 18206 17262 ID=Msa1457160-mRNA-1:exon:21019;Parent=Msa1457160-mRNA-1
tig0038499 five_prime_UTR 14469 14520 14469 ID=Msa1457160-mRNA-1:five_prime_utr;Parent=Msa1457160-mRNA-1
tig0038499 five_prime_UTR 14543 14628 14543 ID=Msa1457160-mRNA-1:five_prime_utr;Parent=Msa1457160-mRNA-1
tig0038499 CDS 14629 14645 14629 ID=Msa1457160-mRNA-1:cds;Parent=Msa1457160-mRNA-1
tig0038499 CDS 14759 15113 14759 ID=Msa1457160-mRNA-1:cds;Parent=Msa1457160-mRNA-1
tig0038499 CDS 16108 16644 16108 ID=Msa1457160-mRNA-1:cds;Parent=Msa1457160-mRNA-1
tig0038499 CDS 17262 18083 17262 ID=Msa1457160-mRNA-1:cds;Parent=Msa1457160-mRNA-1
tig0038499 three_prime_UTR 18084 18206 18084 ID=Msa1457160-mRNA-1:three_prime_utr;Parent=Msa1457160-mRNA-1
Gene Sequence

>Msa1457160

ATGGCACAACCTAAATTATTTAGCAGTGGAATTGAGCATGCATCATTTGTGACAAGCTATCAAATCCTTAAAAAAACATGGAATGTTATCTCATCTAGTTTTAAAGACATAGTTACAAATGATGATGGTGTTGGATTGAGTTGGAAAGTTTACAAAGAACAGAGTCCTGATTTGACTATTATAGCCTTTGAAGCTACCACAGATTCTTCCAATCTTCAAAGTGATTTGGTTTCATCTTCTGATCTTAATAAGAAGAATTTTCATCAGTTTGACTTTTTATGTTCCAAGAAGAATCCTTCTTTCTCTCTGAATAGCACTGCTGTTTCACTCTTTTGTGATAATTTTCAGAAGCTTGATGAGTTGAAATCTAAGATTTTAGGTGCAAGTCCAGTATCTCCGTTGATTGTTACTGGAAAAGGTCTTGGAGGATCAATAGCTTCACTCTTCACAATATCACTATTAGACAACATTGGTTCAACAAAGAATCGTCCACTATGCGTCACGTTTGGTTCACCTCTTGTCGGTGACAAGAAATTGCAACAGGCCATATCACGTAGTTCTAATTGGAATTCTTGCTTTATTCACGTTGTTTCTTGCAATGATCCTCTTCCAAGGCTATTCATCACAAACTACATGCCTTTCGGAACATTTCTCTTTTGTTCTGATTCAGATTCTACTTGTTTTGAAAATCCTGAATCAAATTTGGAAATAATAGTGACACTAAGCAAAATGCATGGACAAAATCAAGGATTCAAATTAGATGATTACGGAAATATAGTCGACAACCTCAGACGTAAAGCATTTTTTAAGGATGTTTTTATGCCGGCTGGAGATGGGACTCATTCAGATTCACTTGTGATCGGTATCAGTTTGCAGTTGCAAGCACTAGGATTGACACCAAACATTCTGAAAAAGAATGACATTGATATCAATGTTCTTGAAACAAAGATAAAAATACTAGAAGAACTATCCATCCGTCAAAAGAAGACATTATTTGATCCATCCAAGAAACTGAATGAAATGAAGCGACATATGGCGCAACTTGAATGGTACAAAATGAAAACAAAAAATCTTCACATAGGGTACTATGACAGCTTCAAAAACATGAACAAGTCATCTGATATTGATGTTGTTAACTTTCATAAAAAGCTCACAATTTATTGGGAAAAGATGGTTGAAGAAGCTGAACTGAAGCCTCAAAGAGAAGGCGCTGCATTTCGTTATCGCTGGCTCTTCGGTGGAACTACATATAGAAGAATGGTTGAACCACTAGTTATTGCTCAATACTATAGAGATGGTGGTAAAGATTATGTCAATAAACAAAGATCCAAACACTTCAAAACTTTGGAAGAATGGCTGGTAGAAGAGTCATCAAAATCCGAAAATGAATCAAATAGTTCAAGTAGAAAGAATGTGGAAGTGATTTTGACTATAGATTCTTGCTTTTGGGCACATGTTGAAGAGGCTATACTTGCATGCAAAGAGTTGAACGAAGTAAAAGACAAAGAAGAGGTATTGAATAAATTGGTTGAATTTGAGGACTATGTTTATGGTTTGCTTAAGGATTATGCTGTGTCCCCTGAGATTTTCTTGAGGCAAAGTAGCTATATGAGTTGGTGGGAGGATTACAAAGCAATTAAGGGATCTTCATACACTTCAAAACTTGCTGACTTCATGAATGATGCTGCAAAGATTAAGCTGTATGGTTTGGGAGCTTATGATTTTCCTTAA

Protein sequence

>Msa1457160

MAQPKLFSSGIEHASFVTSYQILKKTWNVISSSFKDIVTNDDGVGLSWKVYKEQSPDLTIIAFEATTDSSNLQSDLVSSSDLNKKNFHQFDFLCSKKNPSFSLNSTAVSLFCDNFQKLDELKSKILGASPVSPLIVTGKGLGGSIASLFTISLLDNIGSTKNRPLCVTFGSPLVGDKKLQQAISRSSNWNSCFIHVVSCNDPLPRLFITNYMPFGTFLFCSDSDSTCFENPESNLEIIVTLSKMHGQNQGFKLDDYGNIVDNLRRKAFFKDVFMPAGDGTHSDSLVIGISLQLQALGLTPNILKKNDIDINVLETKIKILEELSIRQKKTLFDPSKKLNEMKRHMAQLEWYKMKTKNLHIGYYDSFKNMNKSSDIDVVNFHKKLTIYWEKMVEEAELKPQREGAAFRYRWLFGGTTYRRMVEPLVIAQYYRDGGKDYVNKQRSKHFKTLEEWLVEESSKSENESNSSSRKNVEVILTIDSCFWAHVEEAILACKELNEVKDKEEVLNKLVEFEDYVYGLLKDYAVSPEIFLRQSSYMSWWEDYKAIKGSSYTSKLADFMNDAAKIKLYGLGAYDFP*