AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0836050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836050 MtrunA17_Chr5g0401871 92.350 183 3 3 1 173 1 182 9.49e-111 313
Msa0836050 MtrunA17_Chr3g0134161 58.667 150 36 3 21 165 42 170 5.16e-50 159
Msa0836050 MtrunA17_Chr1g0153151 74.747 99 22 1 24 119 44 142 9.21e-47 150
Msa0836050 MtrunA17_Chr4g0055951 56.757 74 32 0 24 97 74 147 1.21e-23 93.6
Msa0836050 MtrunA17_Chr1g0150691 55.696 79 35 0 22 100 20 98 1.21e-23 92.8
Msa0836050 MtrunA17_Chr5g0399441 61.111 72 26 1 11 82 17 86 1.23e-23 91.7
Msa0836050 MtrunA17_Chr2g0331231 53.247 77 36 0 6 82 23 99 2.74e-23 91.7
Msa0836050 MtrunA17_Chr5g0396301 44.792 96 49 2 22 115 16 109 3.65e-23 90.1
Msa0836050 MtrunA17_Chr1g0150661 65.000 60 21 0 21 80 32 91 3.81e-23 91.7
Msa0836050 MtrunA17_Chr7g0275841 40.476 126 67 1 24 149 28 145 3.96e-23 90.1
Msa0836050 MtrunA17_Chr6g0486701 66.129 62 21 0 24 85 44 105 7.53e-23 90.5
Msa0836050 MtrunA17_Chr1g0150631 48.913 92 45 1 22 113 36 125 9.20e-23 90.9
Msa0836050 MtrunA17_Chr3g0140161 64.407 59 21 0 24 82 43 101 1.12e-22 89.4
Msa0836050 MtrunA17_Chr2g0301171 48.276 87 40 1 24 110 19 100 1.82e-22 89.4
Msa0836050 MtrunA17_Chr8g0390091 51.190 84 36 1 2 85 20 98 1.87e-22 90.1
Msa0836050 MtrunA17_Chr1g0150671 62.295 61 23 0 20 80 42 102 2.46e-22 90.5
Msa0836050 MtrunA17_Chr2g0301181 49.398 83 37 1 24 106 19 96 2.42e-21 87.0
Msa0836050 MtrunA17_Chr7g0232261 51.852 81 37 1 2 82 41 119 2.86e-21 87.0
Msa0836050 MtrunA17_Chr7g0257911 50.000 82 41 0 12 93 19 100 3.33e-21 87.8
Msa0836050 MtrunA17_Chr5g0437671 59.375 64 26 0 19 82 80 143 6.66e-21 88.2
Msa0836050 MtrunA17_Chr8g0340311 51.282 78 38 0 5 82 28 105 9.10e-21 84.7
Msa0836050 MtrunA17_Chr3g0136551 46.237 93 47 2 21 112 62 152 1.65e-20 85.5
Msa0836050 MtrunA17_Chr8g0346741 60.345 58 23 0 24 81 39 96 1.87e-20 83.2
Msa0836050 MtrunA17_Chr2g0301191 49.398 83 37 1 24 106 19 96 1.97e-20 84.3
Msa0836050 MtrunA17_Chr8g0334801 51.351 74 36 0 24 97 52 125 2.84e-20 83.6
Msa0836050 MtrunA17_Chr1g0196781 59.016 61 25 0 22 82 150 210 5.72e-20 84.7
Msa0836050 MtrunA17_Chr1g0189941 43.519 108 58 1 1 108 1 105 5.98e-20 81.6
Msa0836050 MtrunA17_Chr2g0323171 59.322 59 24 0 24 82 65 123 6.27e-20 82.4
Msa0836050 MtrunA17_Chr4g0044911 59.649 57 23 0 24 80 96 152 1.08e-19 82.8
Msa0836050 MtrunA17_Chr5g0437371 57.746 71 29 1 10 79 51 121 1.83e-19 83.6
Msa0836050 MtrunA17_Chr4g0055781 53.846 78 31 2 18 94 96 169 1.88e-19 82.4
Msa0836050 MtrunA17_Chr3g0115631 50.000 84 39 2 11 93 136 217 1.89e-19 83.6
Msa0836050 MtrunA17_Chr4g0023411 57.627 59 25 0 24 82 65 123 2.50e-19 80.9
Msa0836050 MtrunA17_Chr4g0044871 57.895 57 24 0 24 80 96 152 3.46e-19 81.3
Msa0836050 MtrunA17_Chr7g0221501 56.897 58 25 0 24 81 51 108 3.59e-19 80.1
Msa0836050 MtrunA17_Chr4g0044881 56.897 58 25 0 23 80 113 170 5.87e-19 80.9
Msa0836050 MtrunA17_Chr1g0196871 55.714 70 29 2 20 88 12 80 6.12e-19 77.4
Msa0836050 MtrunA17_Chr2g0295421 52.703 74 35 0 11 84 83 156 6.16e-19 81.3
Msa0836050 MtrunA17_Chr5g0425561 38.835 103 55 1 22 124 171 265 8.11e-19 82.0
Msa0836050 MtrunA17_Chr4g0044901 52.239 67 32 0 24 90 96 162 8.25e-19 80.1
Msa0836050 MtrunA17_Chr2g0324131 54.545 66 30 0 18 83 212 277 8.30e-19 82.4
Msa0836050 MtrunA17_Chr4g0017851 54.839 62 28 0 20 81 114 175 8.49e-19 81.6
Msa0836050 MtrunA17_Chr8g0383591 55.738 61 27 0 21 81 142 202 1.05e-18 81.3
Msa0836050 MtrunA17_Chr3g0099871 58.333 60 25 0 21 80 24 83 1.07e-18 79.7
Msa0836050 MtrunA17_Chr8g0335321 47.561 82 40 2 22 100 94 175 1.55e-18 79.0
Msa0836050 MtrunA17_Chr4g0002631 55.000 60 27 0 21 80 5 64 2.09e-18 78.6
Msa0836050 MtrunA17_Chr4g0055801 59.016 61 24 1 21 80 151 211 2.37e-18 80.1
Msa0836050 MtrunA17_Chr1g0203861 62.500 56 21 0 24 79 44 99 2.62e-18 78.6
Msa0836050 MtrunA17_Chr7g0221471 50.769 65 32 0 24 88 51 115 2.77e-18 77.8
Msa0836050 MtrunA17_Chr8g0335311 57.143 63 26 1 22 83 94 156 4.57e-18 77.8
Msa0836050 MtrunA17_Chr8g0382491 55.738 61 27 0 22 82 111 171 5.36e-18 79.0
Msa0836050 MtrunA17_Chr1g0170531 56.667 60 25 1 22 80 87 146 5.68e-18 78.2
Msa0836050 MtrunA17_Chr2g0282651 53.731 67 29 1 16 80 60 126 7.92e-18 78.2
Msa0836050 MtrunA17_Chr7g0250731 54.545 66 29 1 22 86 59 124 9.18e-18 77.0
Msa0836050 MtrunA17_Chr8g0375031 49.180 61 31 0 19 79 120 180 1.08e-17 77.0
Msa0836050 MtrunA17_Chr5g0396191 66.102 59 20 0 24 82 11 69 1.36e-17 76.3
Msa0836050 MtrunA17_Chr3g0136541 61.111 54 21 0 26 79 42 95 1.81e-17 77.0
Msa0836050 MtrunA17_Chr2g0321071 48.315 89 39 3 24 110 47 130 2.02e-17 76.6
Msa0836050 MtrunA17_Chr7g0250721 54.545 66 29 1 22 86 59 124 2.14e-17 76.3
Msa0836050 MtrunA17_Chr6g0486711 51.250 80 39 0 24 103 49 128 2.60e-17 76.3
Msa0836050 MtrunA17_Chr5g0424051 51.724 87 39 2 19 104 91 175 3.32e-17 77.0
Msa0836050 MtrunA17_Chr1g0158971 55.932 59 26 0 21 79 112 170 3.53e-17 77.4
Msa0836050 MtrunA17_Chr2g0316931 51.471 68 33 0 21 88 28 95 4.57e-17 75.1
Msa0836050 MtrunA17_Chr5g0396181 57.353 68 29 0 16 83 13 80 5.40e-17 74.7
Msa0836050 MtrunA17_Chr7g0265851 59.649 57 23 0 24 80 24 80 5.67e-17 74.7
Msa0836050 MtrunA17_Chr7g0225131 59.649 57 20 1 24 80 29 82 5.80e-17 72.0
Msa0836050 MtrunA17_Chr1g0186671 53.623 69 29 2 15 80 8 76 7.72e-17 72.8
Msa0836050 MtrunA17_Chr7g0250711 51.515 66 31 1 22 86 58 123 8.74e-17 74.3
Msa0836050 MtrunA17_Chr7g0243431 49.398 83 32 2 7 79 58 140 9.70e-17 76.6
Msa0836050 MtrunA17_Chr1g0186731 57.377 61 25 1 21 80 18 78 1.16e-16 72.8
Msa0836050 MtrunA17_Chr2g0334031 55.932 59 26 0 23 81 116 174 1.19e-16 76.3
Msa0836050 MtrunA17_Chr1g0184081 50.000 72 35 1 10 80 7 78 1.29e-16 72.4
Msa0836050 MtrunA17_Chr6g0473971 50.000 72 33 1 11 79 38 109 1.34e-16 74.7
Msa0836050 MtrunA17_Chr3g0137174 53.333 60 28 0 21 80 5 64 1.46e-16 73.6
Msa0836050 MtrunA17_Chr3g0114761 49.438 89 40 2 20 106 21 106 1.83e-16 73.9
Msa0836050 MtrunA17_Chr8g0344961 55.932 59 26 0 23 81 123 181 1.95e-16 75.5
Msa0836050 MtrunA17_Chr3g0126321 42.857 77 44 0 3 79 92 168 2.75e-16 75.1
Msa0836050 MtrunA17_Chr6g0474001 50.000 72 33 1 11 79 38 109 3.47e-16 73.9
Msa0836050 MtrunA17_Chr5g0396171 51.724 58 28 0 26 83 26 83 5.33e-16 69.7
Msa0836050 MtrunA17_Chr8g0335331 54.098 61 27 1 24 83 125 185 6.34e-16 72.0
Msa0836050 MtrunA17_Chr1g0195151 56.140 57 25 0 24 80 77 133 6.38e-16 73.6
Msa0836050 MtrunA17_Chr4g0003421 28.906 128 70 2 22 131 38 162 8.73e-16 72.4
Msa0836050 MtrunA17_Chr4g0063751 47.458 59 31 0 22 80 5 63 1.32e-15 71.2
Msa0836050 MtrunA17_Chr6g0473931 57.143 56 24 0 24 79 33 88 1.33e-15 71.2
Msa0836050 MtrunA17_Chr2g0283181 33.083 133 77 4 21 147 146 272 1.64e-15 72.4
Msa0836050 MtrunA17_Chr1g0146191 62.712 59 22 0 24 82 47 105 1.76e-15 71.6
Msa0836050 MtrunA17_Chr7g0261151 53.333 60 27 1 23 81 19 78 1.87e-15 69.3
Msa0836050 MtrunA17_Chr5g0396911 45.333 75 40 1 5 79 94 167 1.93e-15 72.4
Msa0836050 MtrunA17_Chr2g0282621 53.333 60 28 0 21 80 12 71 1.94e-15 70.1
Msa0836050 MtrunA17_Chr6g0473981 32.394 142 87 3 11 143 38 179 2.14e-15 71.2
Msa0836050 MtrunA17_Chr2g0333011 31.193 109 69 1 22 124 5 113 2.17e-15 70.1
Msa0836050 MtrunA17_Chr6g0473741 55.357 56 25 0 24 79 66 121 2.40e-15 70.9
Msa0836050 MtrunA17_Chr6g0473941 57.143 56 24 0 24 79 33 88 2.54e-15 70.5
Msa0836050 MtrunA17_Chr6g0473961 48.611 72 34 1 11 79 38 109 3.18e-15 70.5
Msa0836050 MtrunA17_Chr5g0438801 46.053 76 40 1 6 80 32 107 4.08e-15 71.2
Msa0836050 MtrunA17_Chr7g0261101 54.237 59 26 1 23 80 19 77 4.11e-15 68.6
Msa0836050 MtrunA17_Chr6g0473861 53.571 56 26 0 24 79 63 118 6.06e-15 70.5
Msa0836050 MtrunA17_Chr5g0398091 50.000 78 30 2 11 79 38 115 8.07e-15 69.7
Msa0836050 MtrunA17_Chr6g0473781 39.806 103 55 2 10 110 41 138 8.51e-15 69.3
Msa0836050 MtrunA17_Chr8g0350701 55.172 58 26 0 22 79 25 82 8.82e-15 70.5
Msa0836050 MtrunA17_Chr2g0297331 54.839 62 27 1 21 81 11 72 9.16e-15 67.4
Msa0836050 MtrunA17_Chr5g0438831 50.000 60 30 0 21 80 43 102 9.32e-15 70.1
Msa0836050 MtrunA17_Chr4g0046161 50.820 61 29 1 21 80 54 114 9.64e-15 67.0
Msa0836050 MtrunA17_Chr5g0398081 39.200 125 62 3 11 121 33 157 1.06e-14 69.3
Msa0836050 MtrunA17_Chr5g0398061 50.000 78 30 2 11 79 33 110 1.09e-14 69.3
Msa0836050 MtrunA17_Chr6g0473771 53.571 56 26 0 24 79 43 98 1.35e-14 66.6
Msa0836050 MtrunA17_Chr6g0473881 48.611 72 35 1 10 79 94 165 1.55e-14 69.7
Msa0836050 MtrunA17_Chr4g0057241 61.404 57 21 1 24 80 15 70 1.61e-14 67.8
Msa0836050 MtrunA17_Chr8g0378811 43.750 80 44 1 1 79 31 110 2.28e-14 68.9
Msa0836050 MtrunA17_Chr1g0186681 48.571 70 30 2 13 80 12 77 2.55e-14 66.2
Msa0836050 MtrunA17_Chr2g0283171 48.387 62 31 1 20 80 59 120 2.64e-14 66.6
Msa0836050 MtrunA17_Chr1g0155751 51.948 77 37 0 12 88 27 103 2.74e-14 68.6
Msa0836050 MtrunA17_Chr8g0367911 50.877 57 28 0 23 79 43 99 2.96e-14 68.9
Msa0836050 MtrunA17_Chr4g0026881 46.377 69 36 1 20 87 93 161 3.25e-14 68.2
Msa0836050 MtrunA17_Chr7g0253424 44.156 77 38 2 3 79 23 94 3.35e-14 68.6
Msa0836050 MtrunA17_Chr8g0387801 38.202 89 50 2 22 107 105 191 4.03e-14 68.6
Msa0836050 MtrunA17_Chr3g0129421 50.000 86 41 1 4 87 148 233 4.49e-14 68.9
Msa0836050 MtrunA17_Chr7g0261181 57.353 68 28 1 14 80 3 70 5.43e-14 65.1
Msa0836050 MtrunA17_Chr1g0170471 56.000 50 21 1 32 80 91 140 5.96e-14 66.2
Msa0836050 MtrunA17_Chr3g0131601 37.500 120 46 2 22 141 74 164 6.87e-14 67.4
Msa0836050 MtrunA17_Chr4g0055761 51.667 60 28 1 22 80 143 202 1.32e-13 66.6
Msa0836050 MtrunA17_Chr4g0042761 53.448 58 27 0 22 79 46 103 1.51e-13 67.0
Msa0836050 MtrunA17_Chr6g0453661 46.154 65 35 0 15 79 29 93 1.63e-13 67.4
Msa0836050 MtrunA17_Chr3g0142081 55.882 68 30 0 15 82 30 97 1.68e-13 65.9
Msa0836050 MtrunA17_Chr5g0432821 49.123 57 29 0 24 80 124 180 3.34e-13 65.9
Msa0836050 MtrunA17_Chr4g0066931 41.558 77 39 1 3 79 38 108 6.19e-13 65.5
Msa0836050 MtrunA17_Chr5g0412641 50.877 57 28 0 23 79 45 101 6.52e-13 65.5
Msa0836050 MtrunA17_Chr7g0217991 48.276 58 30 0 22 79 40 97 7.36e-13 65.5
Msa0836050 MtrunA17_Chr4g0057231 54.839 62 22 2 34 89 56 117 8.89e-13 62.4
Msa0836050 MtrunA17_Chr4g0062551 41.667 60 35 0 21 80 50 109 1.96e-12 61.6
Msa0836050 MtrunA17_Chr4g0026931 47.619 63 32 1 20 81 127 189 2.46e-12 63.5
Msa0836050 MtrunA17_Chr3g0137831 33.333 123 66 2 18 124 2 124 3.21e-12 62.4
Msa0836050 MtrunA17_Chr4g0062161 41.667 60 35 0 21 80 50 109 4.66e-12 61.6
Msa0836050 MtrunA17_Chr8g0345551 57.143 42 18 0 24 65 117 158 6.11e-12 62.8
Msa0836050 MtrunA17_Chr6g0461941 45.570 79 43 0 7 85 3 81 6.61e-12 61.2
Msa0836050 MtrunA17_Chr5g0396741 46.000 100 48 2 21 120 114 207 7.75e-12 62.4
Msa0836050 MtrunA17_Chr2g0286161 39.474 76 40 1 4 79 36 105 7.85e-12 62.0
Msa0836050 MtrunA17_Chr8g0345531 30.882 136 84 2 23 158 115 240 8.86e-12 62.4
Msa0836050 MtrunA17_Chr1g0184061 46.667 60 31 1 21 79 74 133 1.48e-11 60.5
Msa0836050 MtrunA17_Chr1g0184071 50.000 60 29 1 21 79 66 125 1.63e-11 59.7
Msa0836050 MtrunA17_Chr7g0252381 50.877 57 28 0 23 79 41 97 1.83e-11 60.8
Msa0836050 MtrunA17_Chr1g0183961 51.471 68 32 1 23 89 26 93 1.99e-11 58.9
Msa0836050 MtrunA17_Chr1g0184031 46.032 63 33 1 18 79 78 140 2.02e-11 60.1
Msa0836050 MtrunA17_Chr1g0203831 59.375 64 23 2 17 80 52 112 3.17e-11 59.3
Msa0836050 MtrunA17_Chr6g0473791 48.980 49 25 0 24 72 57 105 3.73e-11 58.2
Msa0836050 MtrunA17_Chr1g0183981 46.667 60 31 1 21 79 72 131 4.93e-11 58.9
Msa0836050 MtrunA17_Chr5g0423811 60.465 43 17 0 23 65 87 129 6.00e-11 59.7
Msa0836050 MtrunA17_Chr6g0461271 45.614 57 31 0 23 79 32 88 6.12e-11 59.7
Msa0836050 MtrunA17_Chr1g0149331 50.000 58 29 0 23 80 6 63 7.38e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836050 AT2G23340.1 64.024 164 44 5 6 168 17 166 2.56e-58 180
Msa0836050 AT5G67190.1 60.714 168 40 4 21 169 18 178 5.28e-57 177
Msa0836050 AT3G50260.1 62.416 149 38 3 21 169 18 148 5.05e-55 171
Msa0836050 AT4G36900.1 56.983 179 37 4 21 169 27 195 2.16e-52 166
Msa0836050 AT4G06746.1 72.072 111 31 0 21 131 33 143 4.78e-47 150
Msa0836050 AT1G46768.3 67.273 110 35 1 18 126 25 134 1.09e-45 147
Msa0836050 AT1G46768.1 67.273 110 35 1 18 126 25 134 1.51e-45 147
Msa0836050 AT1G46768.2 67.273 110 35 1 18 126 25 134 1.51e-45 147
Msa0836050 AT4G16750.1 57.143 77 33 0 6 82 22 98 9.46e-27 100
Msa0836050 AT1G19210.1 52.174 92 39 1 15 106 3 89 1.01e-26 100
Msa0836050 AT1G71450.1 58.442 77 30 1 6 82 8 82 1.56e-25 97.1
Msa0836050 AT5G21960.1 41.525 118 60 2 18 135 1 109 8.36e-25 95.9
Msa0836050 AT1G21910.1 70.175 57 17 0 24 80 50 106 2.45e-24 95.1
Msa0836050 AT2G44940.1 51.648 91 41 1 10 100 89 176 2.16e-23 94.0
Msa0836050 AT5G11590.1 44.118 102 57 0 7 108 34 135 1.49e-22 90.5
Msa0836050 AT1G74930.1 59.722 72 25 1 9 80 10 77 1.68e-22 89.4
Msa0836050 AT1G01250.1 55.844 77 28 1 11 81 26 102 2.68e-22 89.0
Msa0836050 AT2G35700.1 64.407 59 21 0 24 82 45 103 5.31e-22 88.2
Msa0836050 AT3G60490.1 53.086 81 38 0 2 82 49 129 6.16e-22 89.4
Msa0836050 AT4G32800.1 51.220 82 35 1 1 82 1 77 1.03e-21 88.2
Msa0836050 AT1G71520.1 45.455 99 44 2 21 115 11 103 1.31e-21 85.9
Msa0836050 AT1G22810.1 46.465 99 45 3 19 115 9 101 6.98e-21 84.0
Msa0836050 AT2G25820.1 64.407 59 21 0 24 82 26 84 1.11e-20 85.5
Msa0836050 AT2G33710.1 59.016 61 25 0 21 81 67 127 1.45e-20 85.1
Msa0836050 AT3G16280.1 61.017 59 23 0 24 82 61 119 1.61e-20 85.1
Msa0836050 AT2G33710.2 59.016 61 25 0 21 81 67 127 1.63e-20 85.1
Msa0836050 AT3G16280.2 61.017 59 23 0 24 82 79 137 1.92e-20 85.5
Msa0836050 AT1G22190.1 52.778 72 34 0 11 82 70 141 2.46e-20 85.1
Msa0836050 AT1G36060.1 47.000 100 43 2 22 119 141 232 3.04e-20 85.9
Msa0836050 AT5G25810.1 61.017 59 23 0 24 82 36 94 3.90e-20 84.0
Msa0836050 AT1G75490.1 55.556 72 32 0 12 83 30 101 4.36e-20 83.6
Msa0836050 AT2G22200.1 44.086 93 50 1 24 114 71 163 6.15e-20 84.3
Msa0836050 AT2G20880.1 61.667 60 23 0 24 83 187 246 6.96e-20 85.1
Msa0836050 AT3G20310.1 56.061 66 29 0 15 80 18 83 1.30e-19 83.2
Msa0836050 AT2G40340.3 41.964 112 61 2 7 115 52 162 1.31e-19 84.0
Msa0836050 AT2G40340.1 41.964 112 61 2 7 115 52 162 1.48e-19 84.3
Msa0836050 AT2G40340.2 42.574 101 57 1 15 115 5 104 1.63e-19 83.6
Msa0836050 AT2G40340.5 42.574 101 57 1 15 115 5 104 1.63e-19 83.6
Msa0836050 AT2G40340.4 42.574 101 57 1 15 115 5 104 1.63e-19 83.6
Msa0836050 AT4G39780.1 53.846 65 30 0 18 82 87 151 1.73e-19 83.2
Msa0836050 AT2G40340.6 41.964 112 61 2 7 115 59 169 1.76e-19 84.3
Msa0836050 AT4G13620.1 30.899 178 92 5 10 171 218 380 2.60e-19 84.0
Msa0836050 AT4G11140.1 53.030 66 31 0 22 87 85 150 3.56e-19 82.4
Msa0836050 AT3G57600.1 54.930 71 32 0 12 82 16 86 6.35e-19 81.6
Msa0836050 AT2G47520.1 50.000 80 36 1 19 94 41 120 6.57e-19 79.7
Msa0836050 AT4G28140.1 60.000 60 24 0 22 81 141 200 9.07e-19 81.6
Msa0836050 AT5G47230.1 62.295 61 22 1 21 80 153 213 1.01e-18 81.6
Msa0836050 AT1G77640.1 48.889 90 45 1 22 110 41 130 1.34e-18 80.5
Msa0836050 AT5G07580.1 55.405 74 31 2 22 94 108 180 1.38e-18 79.7
Msa0836050 AT1G78080.1 55.714 70 29 1 15 82 141 210 1.56e-18 81.6
Msa0836050 AT5G05410.2 58.730 63 26 0 24 86 79 141 1.57e-18 81.3
Msa0836050 AT5G65130.1 54.839 62 28 0 22 83 109 170 1.64e-18 80.5
Msa0836050 AT5G65130.2 54.839 62 28 0 22 83 111 172 1.81e-18 80.5
Msa0836050 AT5G05410.1 58.730 63 26 0 24 86 79 141 1.81e-18 81.3
Msa0836050 AT5G13330.1 48.571 70 36 0 22 91 37 106 1.98e-18 79.3
Msa0836050 AT5G25190.1 43.529 85 44 1 21 105 5 85 1.99e-18 78.6
Msa0836050 AT3G15210.1 49.315 73 37 0 21 93 22 94 3.31e-18 79.0
Msa0836050 AT5G61890.1 49.275 69 35 0 22 90 88 156 3.52e-18 79.3
Msa0836050 AT1G03800.1 52.941 68 32 0 13 80 42 109 4.18e-18 79.0
Msa0836050 AT4G23750.2 56.667 60 26 0 20 79 118 177 4.33e-18 80.5
Msa0836050 AT4G23750.1 56.667 60 26 0 20 79 118 177 4.33e-18 80.5
Msa0836050 AT1G77200.1 58.333 72 30 0 11 82 30 101 4.38e-18 79.0
Msa0836050 AT1G28370.1 52.857 70 29 1 11 80 11 76 4.61e-18 77.4
Msa0836050 AT5G61600.1 61.667 60 22 1 22 80 86 145 4.73e-18 79.0
Msa0836050 AT2G44840.1 58.065 62 25 1 23 83 91 152 5.61e-18 78.2
Msa0836050 AT5G51190.1 47.674 86 43 2 21 105 69 153 6.62e-18 78.2
Msa0836050 AT1G28370.2 52.857 70 29 1 11 80 49 114 7.32e-18 77.4
Msa0836050 AT5G44210.1 46.591 88 38 2 14 94 16 101 7.61e-18 77.4
Msa0836050 AT1G72360.1 49.367 79 36 1 15 89 12 90 9.15e-18 77.4
Msa0836050 AT5G25390.2 33.333 111 66 2 22 124 5 115 1.01e-17 77.0
Msa0836050 AT4G17490.1 55.385 65 28 1 17 80 130 194 1.05e-17 78.6
Msa0836050 AT1G72360.2 48.750 80 37 1 14 89 62 141 1.24e-17 78.2
Msa0836050 AT4G31060.1 57.627 59 25 0 22 80 25 83 2.77e-17 75.9
Msa0836050 AT1G72360.3 53.731 67 31 0 23 89 73 139 3.24e-17 77.0
Msa0836050 AT4G25490.1 60.714 56 22 0 24 79 48 103 3.30e-17 75.9
Msa0836050 AT5G51990.1 62.500 56 21 0 24 79 54 109 3.51e-17 76.3
Msa0836050 AT4G25470.1 60.714 56 22 0 24 79 51 106 3.77e-17 75.9
Msa0836050 AT3G16770.1 57.627 59 25 0 24 82 79 137 4.01e-17 76.6
Msa0836050 AT4G25480.1 60.714 56 22 0 24 79 51 106 4.19e-17 75.9
Msa0836050 AT1G44830.1 66.129 62 20 1 22 82 33 94 4.35e-17 75.9
Msa0836050 AT4G27950.1 53.333 60 28 0 20 79 114 173 4.56e-17 77.4
Msa0836050 AT3G11020.1 36.134 119 65 2 24 142 78 185 4.85e-17 77.4
Msa0836050 AT1G33760.1 43.363 113 46 2 24 118 20 132 5.52e-17 74.7
Msa0836050 AT2G40350.2 52.941 68 32 0 15 82 65 132 6.23e-17 74.3
Msa0836050 AT2G36450.1 53.333 75 30 2 7 80 2 72 6.60e-17 74.7
Msa0836050 AT1G28360.1 37.838 111 69 0 21 131 9 119 6.69e-17 74.7
Msa0836050 AT2G40350.1 52.941 68 32 0 15 82 58 125 7.19e-17 73.9
Msa0836050 AT5G18450.1 46.053 76 41 0 4 79 14 89 9.38e-17 76.3
Msa0836050 AT5G53290.1 47.887 71 36 1 10 79 110 180 3.04e-16 75.1
Msa0836050 AT1G15360.1 50.847 59 29 0 22 80 5 63 4.36e-16 72.8
Msa0836050 AT1G15360.2 50.847 59 29 0 22 80 5 63 4.36e-16 72.8
Msa0836050 AT1G50640.1 53.333 60 28 0 21 80 25 84 5.15e-16 73.2
Msa0836050 AT3G61630.1 53.448 58 27 0 22 79 103 160 5.79e-16 74.3
Msa0836050 AT2G40220.1 59.722 72 28 1 9 79 39 110 8.11e-16 73.9
Msa0836050 AT3G23230.1 53.968 63 28 1 19 80 15 77 1.06e-15 70.5
Msa0836050 AT5G43410.1 51.429 70 32 2 13 80 3 72 1.06e-15 70.1
Msa0836050 AT5G25390.1 32.432 111 64 3 22 124 5 112 3.62e-15 70.1
Msa0836050 AT1G12610.1 54.167 72 30 1 11 79 14 85 3.95e-15 70.5
Msa0836050 AT5G47220.1 53.333 60 27 1 22 80 115 174 1.03e-14 69.7
Msa0836050 AT2G46310.1 46.269 67 36 0 13 79 88 154 1.03e-14 70.5
Msa0836050 AT2G38340.1 46.739 92 38 2 5 85 48 139 1.03e-14 70.1
Msa0836050 AT2G31230.1 42.553 94 48 2 17 104 79 172 1.73e-14 69.3
Msa0836050 AT1G63030.2 50.000 72 33 1 11 79 14 85 2.67e-14 67.8
Msa0836050 AT1G63030.1 50.000 72 33 1 11 79 14 85 2.67e-14 67.8
Msa0836050 AT5G52020.1 47.312 93 47 2 12 103 52 143 4.49e-14 68.2
Msa0836050 AT1G43160.1 53.846 65 30 0 17 81 54 118 5.01e-14 67.0
Msa0836050 AT5G50080.2 57.143 63 27 0 19 81 81 143 5.64e-14 67.8
Msa0836050 AT4G17500.1 53.333 60 27 1 22 80 146 205 5.72e-14 68.2
Msa0836050 AT5G50080.1 57.143 63 27 0 19 81 72 134 6.71e-14 67.4
Msa0836050 AT5G07310.1 48.718 78 38 1 17 92 85 162 1.01e-13 67.4
Msa0836050 AT5G64750.1 58.000 50 21 0 32 81 193 242 1.62e-13 67.8
Msa0836050 AT1G71130.1 40.964 83 44 1 21 98 76 158 2.11e-13 64.7
Msa0836050 AT5G18560.1 42.105 76 39 1 4 79 40 110 9.32e-13 65.5
Msa0836050 AT3G23240.1 49.180 61 30 1 20 79 78 138 9.97e-13 64.3
Msa0836050 AT1G12980.1 46.154 65 35 0 15 79 48 112 1.43e-12 64.7
Msa0836050 AT5G19790.1 47.458 59 31 0 21 79 19 77 1.53e-12 63.9
Msa0836050 AT5G61590.1 57.534 73 29 2 22 93 105 176 1.59e-12 63.2
Msa0836050 AT5G11190.1 33.628 113 65 2 22 124 5 117 2.09e-12 62.8
Msa0836050 AT1G64380.1 50.000 88 41 1 21 108 133 217 2.73e-12 63.9
Msa0836050 AT5G13910.1 40.506 79 43 1 1 79 1 75 3.50e-12 62.4
Msa0836050 AT1G24590.1 50.877 57 28 0 23 79 57 113 3.76e-12 63.5
Msa0836050 AT1G28160.1 49.153 59 30 0 21 79 36 94 5.24e-12 62.4
Msa0836050 AT4G34410.1 56.140 57 25 0 24 80 136 192 7.32e-12 62.4
Msa0836050 AT1G68550.1 43.750 64 27 1 22 85 111 165 2.03e-11 61.6
Msa0836050 AT1G68550.2 43.750 64 27 1 22 85 111 165 2.03e-11 61.6
Msa0836050 AT1G22985.1 46.774 62 30 1 21 79 72 133 2.55e-11 59.3
Msa0836050 AT3G14230.3 40.000 110 60 2 23 130 122 227 5.85e-11 60.5
Msa0836050 AT3G14230.1 40.000 110 60 2 23 130 127 232 6.19e-11 60.5
Msa0836050 AT3G14230.2 40.000 110 60 2 23 130 123 228 6.27e-11 60.1
Msa0836050 AT1G53910.3 55.738 61 27 0 21 81 120 180 8.48e-11 59.7
Msa0836050 AT1G53910.1 55.738 61 27 0 21 81 122 182 8.60e-11 59.7
Msa0836050 AT1G53910.2 55.738 61 27 0 21 81 122 182 8.60e-11 59.7

Find 53 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAAACGTTCTCGAATT+TGG 0.167826 5_4:+9438653 Msa0836050:CDS
GTATGAGAAAGTGGGGAAAA+TGG 0.298368 5_4:+9438611 Msa0836050:CDS
CAAATTCGAGAACGTTTGTT+TGG 0.351247 5_4:-9438652 None:intergenic
TCATCAGAACTCTCTGGTTC+AGG 0.383265 5_4:-9439012 None:intergenic
ATCATCACCTTCAGCATAAC+CGG 0.397172 5_4:+9438899 Msa0836050:CDS
TTACTTGAAGGTGATGGTTC+TGG 0.403735 5_4:+9438955 Msa0836050:CDS
TAAGCTCTAGCGGCGGCGAT+AGG 0.414589 5_4:-9438694 None:intergenic
AACGGTGGCGGTGGTGTTGA+TGG 0.417285 5_4:+9438565 Msa0836050:CDS
AAACGTTCTCGAATTTGGTT+AGG 0.421855 5_4:+9438658 Msa0836050:CDS
TCATCGCATGATACCGGTTC+CGG 0.423148 5_4:+9438930 Msa0836050:CDS
TCATGCGATGATGCTGGTTC+CGG 0.424693 5_4:-9438918 None:intergenic
TATGAGAAAGTGGGGAAAAT+GGG 0.444790 5_4:+9438612 Msa0836050:CDS
AGAGACATGGACGGTGGAAG+AGG 0.446682 5_4:+9438523 None:intergenic
AAGCTCTAGCGGCGGCGATA+GGG 0.462945 5_4:-9438693 None:intergenic
CCTTCAAGTAACTCCGGAAC+CGG 0.466998 5_4:-9438943 None:intergenic
AGAAAGAAAGCTACTGAAGT+TGG 0.479551 5_4:+9438835 Msa0836050:CDS
ATGGACGGTGGAAGAGGAAA+AGG 0.488067 5_4:+9438529 Msa0836050:CDS
CCGGTTCCGGAGTTACTTGA+AGG 0.493277 5_4:+9438943 Msa0836050:CDS
AACGCGGTTGTTGGTGGTGG+TGG 0.494695 5_4:+9438790 Msa0836050:CDS
GGTGAAAACAACGCGGTTGT+TGG 0.494800 5_4:+9438781 Msa0836050:CDS
AAGGAATTCGTATGAGAAAG+TGG 0.497126 5_4:+9438602 Msa0836050:CDS
AAAGGAGAGAGAAAGAGAAA+CGG 0.509314 5_4:+9438547 Msa0836050:CDS
CCGGAGTTACTTGAAGGTGA+TGG 0.511266 5_4:+9438949 Msa0836050:CDS
AGAAAGAGAAACGGTGGCGG+TGG 0.516478 5_4:+9438556 Msa0836050:CDS
AAGCTACTGAAGTTGGTGCT+AGG 0.521816 5_4:+9438842 Msa0836050:CDS
AGCTACTGAAGTTGGTGCTA+GGG 0.528458 5_4:+9438843 Msa0836050:CDS
GGGAAATTGAGACGAGCTGA+TGG 0.530869 5_4:-9438745 None:intergenic
GGCGGCGATAGGGGTAGAAT+AGG 0.531458 5_4:-9438683 None:intergenic
CCAGCATCATCGCATGATAC+CGG 0.536423 5_4:+9438924 Msa0836050:CDS
CCGGTATCATGCGATGATGC+TGG 0.538643 5_4:-9438924 None:intergenic
AGGAATTCGTATGAGAAAGT+GGG 0.540435 5_4:+9438603 Msa0836050:CDS
AACAACGCGGTTGTTGGTGG+TGG 0.551437 5_4:+9438787 Msa0836050:CDS
TTTCACCGGCGAGTAGCTCT+GGG 0.551502 5_4:-9438765 None:intergenic
TGGTGGTGGTGGTGATATGT+CGG 0.551510 5_4:+9438801 Msa0836050:CDS
TCCCACTCATCAGAACTCTC+TGG 0.552632 5_4:-9439018 None:intergenic
TGAGACGAGCTGATGGTCCC+CGG 0.559700 5_4:-9438738 None:intergenic
GATGGAGAGAGAAGATACAA+AGG 0.565797 5_4:+9438583 Msa0836050:CDS
GAGAGAAAGAGAAACGGTGG+CGG 0.571281 5_4:+9438553 Msa0836050:CDS
AACCAGAGAGTTCTGATGAG+TGG 0.575238 5_4:+9439016 Msa0836050:CDS
AGCTCTAGCGGCGGCGATAG+GGG 0.577565 5_4:-9438692 None:intergenic
GCTGGTTCCGGTTATGCTGA+AGG 0.587783 5_4:-9438906 None:intergenic
TGCGGTGTCGTAAGCTCTAG+CGG 0.595808 5_4:-9438704 None:intergenic
GAAAACAACGCGGTTGTTGG+TGG 0.608826 5_4:+9438784 Msa0836050:CDS
CCATCACCTTCAAGTAACTC+CGG 0.612744 5_4:-9438949 None:intergenic
GGAGAGAGAAAGAGAAACGG+TGG 0.614378 5_4:+9438550 Msa0836050:CDS
ACCAGAGAGTTCTGATGAGT+GGG 0.626871 5_4:+9439017 Msa0836050:CDS
GGAATTCGTATGAGAAAGTG+GGG 0.631705 5_4:+9438604 Msa0836050:CDS
AATTTCCCAGAGCTACTCGC+CGG 0.640999 5_4:+9438760 Msa0836050:CDS
AGAGAGAGAGACATGGACGG+TGG 0.647011 5_4:+9438517 None:intergenic
TGGTGGTGGTGATATGTCGG+CGG 0.677881 5_4:+9438804 Msa0836050:CDS
GGTGTCGTAAGCTCTAGCGG+CGG 0.768620 5_4:-9438701 None:intergenic
TCCCCGGAGATAGAAAACTG+CGG 0.787220 5_4:-9438722 None:intergenic
ACTCGCCGGTGAAAACAACG+CGG 0.860014 5_4:+9438774 Msa0836050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAAGGAGAGAGAAAGAGAAA+CGG + chr5_4:9438547-9438566 Msa0836050:CDS 35.0%
AAGGAATTCGTATGAGAAAG+TGG + chr5_4:9438602-9438621 Msa0836050:CDS 35.0%
AGGAATTCGTATGAGAAAGT+GGG + chr5_4:9438603-9438622 Msa0836050:CDS 35.0%
TATGAGAAAGTGGGGAAAAT+GGG + chr5_4:9438612-9438631 Msa0836050:CDS 35.0%
CAAATTCGAGAACGTTTGTT+TGG - chr5_4:9438655-9438674 None:intergenic 35.0%
CAAACAAACGTTCTCGAATT+TGG + chr5_4:9438653-9438672 Msa0836050:CDS 35.0%
AAACGTTCTCGAATTTGGTT+AGG + chr5_4:9438658-9438677 Msa0836050:CDS 35.0%
AGAAAGAAAGCTACTGAAGT+TGG + chr5_4:9438835-9438854 Msa0836050:CDS 35.0%
GATGGAGAGAGAAGATACAA+AGG + chr5_4:9438583-9438602 Msa0836050:CDS 40.0%
GGAATTCGTATGAGAAAGTG+GGG + chr5_4:9438604-9438623 Msa0836050:CDS 40.0%
GTATGAGAAAGTGGGGAAAA+TGG + chr5_4:9438611-9438630 Msa0836050:CDS 40.0%
ATCATCACCTTCAGCATAAC+CGG + chr5_4:9438899-9438918 Msa0836050:CDS 40.0%
! TTACTTGAAGGTGATGGTTC+TGG + chr5_4:9438955-9438974 Msa0836050:CDS 40.0%
! ACACCGCAGTTTTCTATCTC+CGG + chr5_4:9438719-9438738 Msa0836050:CDS 45.0%
!! AACAACCGCGTTGTTTTCAC+CGG - chr5_4:9438782-9438801 None:intergenic 45.0%
!! AAGCTACTGAAGTTGGTGCT+AGG + chr5_4:9438842-9438861 Msa0836050:CDS 45.0%
!! AGCTACTGAAGTTGGTGCTA+GGG + chr5_4:9438843-9438862 Msa0836050:CDS 45.0%
CCATCACCTTCAAGTAACTC+CGG - chr5_4:9438952-9438971 None:intergenic 45.0%
! TCATCAGAACTCTCTGGTTC+AGG - chr5_4:9439015-9439034 None:intergenic 45.0%
! AACCAGAGAGTTCTGATGAG+TGG + chr5_4:9439016-9439035 Msa0836050:CDS 45.0%
! ACCAGAGAGTTCTGATGAGT+GGG + chr5_4:9439017-9439036 Msa0836050:CDS 45.0%
ATGGACGGTGGAAGAGGAAA+AGG + chr5_4:9438529-9438548 Msa0836050:CDS 50.0%
GGAGAGAGAAAGAGAAACGG+TGG + chr5_4:9438550-9438569 Msa0836050:CDS 50.0%
GAGAGAAAGAGAAACGGTGG+CGG + chr5_4:9438553-9438572 Msa0836050:CDS 50.0%
! CACCGCAGTTTTCTATCTCC+GGG + chr5_4:9438720-9438739 Msa0836050:CDS 50.0%
! ACCGCAGTTTTCTATCTCCG+GGG + chr5_4:9438721-9438740 Msa0836050:CDS 50.0%
TCCCCGGAGATAGAAAACTG+CGG - chr5_4:9438725-9438744 None:intergenic 50.0%
GGGAAATTGAGACGAGCTGA+TGG - chr5_4:9438748-9438767 None:intergenic 50.0%
AATTTCCCAGAGCTACTCGC+CGG + chr5_4:9438760-9438779 Msa0836050:CDS 50.0%
GGTGAAAACAACGCGGTTGT+TGG + chr5_4:9438781-9438800 Msa0836050:CDS 50.0%
GAAAACAACGCGGTTGTTGG+TGG + chr5_4:9438784-9438803 Msa0836050:CDS 50.0%
!! TGGTGGTGGTGGTGATATGT+CGG + chr5_4:9438801-9438820 Msa0836050:CDS 50.0%
!! TCATGCGATGATGCTGGTTC+CGG - chr5_4:9438921-9438940 None:intergenic 50.0%
CCAGCATCATCGCATGATAC+CGG + chr5_4:9438924-9438943 Msa0836050:CDS 50.0%
!! TCATCGCATGATACCGGTTC+CGG + chr5_4:9438930-9438949 Msa0836050:CDS 50.0%
CCTTCAAGTAACTCCGGAAC+CGG - chr5_4:9438946-9438965 None:intergenic 50.0%
CCGGAGTTACTTGAAGGTGA+TGG + chr5_4:9438949-9438968 Msa0836050:CDS 50.0%
TCCCACTCATCAGAACTCTC+TGG - chr5_4:9439021-9439040 None:intergenic 50.0%
! AGAAAGAGAAACGGTGGCGG+TGG + chr5_4:9438556-9438575 Msa0836050:CDS 55.0%
!! TGCGGTGTCGTAAGCTCTAG+CGG - chr5_4:9438707-9438726 None:intergenic 55.0%
TTTCACCGGCGAGTAGCTCT+GGG - chr5_4:9438768-9438787 None:intergenic 55.0%
! TTTTCACCGGCGAGTAGCTC+TGG - chr5_4:9438769-9438788 None:intergenic 55.0%
ACTCGCCGGTGAAAACAACG+CGG + chr5_4:9438774-9438793 Msa0836050:CDS 55.0%
! AACAACGCGGTTGTTGGTGG+TGG + chr5_4:9438787-9438806 Msa0836050:CDS 55.0%
!! TGGTGGTGGTGATATGTCGG+CGG + chr5_4:9438804-9438823 Msa0836050:CDS 55.0%
! GCTGGTTCCGGTTATGCTGA+AGG - chr5_4:9438909-9438928 None:intergenic 55.0%
CCGGTATCATGCGATGATGC+TGG - chr5_4:9438927-9438946 None:intergenic 55.0%
CCGGTTCCGGAGTTACTTGA+AGG + chr5_4:9438943-9438962 Msa0836050:CDS 55.0%
! AACGGTGGCGGTGGTGTTGA+TGG + chr5_4:9438565-9438584 Msa0836050:CDS 60.0%
GGCGGCGATAGGGGTAGAAT+AGG - chr5_4:9438686-9438705 None:intergenic 60.0%
! AAGCTCTAGCGGCGGCGATA+GGG - chr5_4:9438696-9438715 None:intergenic 60.0%
! TAAGCTCTAGCGGCGGCGAT+AGG - chr5_4:9438697-9438716 None:intergenic 60.0%
! GGTGTCGTAAGCTCTAGCGG+CGG - chr5_4:9438704-9438723 None:intergenic 60.0%
TGAGACGAGCTGATGGTCCC+CGG - chr5_4:9438741-9438760 None:intergenic 60.0%
!! AACGCGGTTGTTGGTGGTGG+TGG + chr5_4:9438790-9438809 Msa0836050:CDS 60.0%
! AGCTCTAGCGGCGGCGATAG+GGG - chr5_4:9438695-9438714 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9438529 9439050 9438529 ID=Msa0836050;Name=Msa0836050
chr5_4 mRNA 9438529 9439050 9438529 ID=Msa0836050-mRNA-1;Parent=Msa0836050;Name=Msa0836050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|173
chr5_4 exon 9438529 9439050 9438529 ID=Msa0836050-mRNA-1:exon:4125;Parent=Msa0836050-mRNA-1
chr5_4 CDS 9438529 9439050 9438529 ID=Msa0836050-mRNA-1:cds;Parent=Msa0836050-mRNA-1
Gene Sequence

>Msa0836050

ATGGACGGTGGAAGAGGAAAAGGAGAGAGAAAGAGAAACGGTGGCGGTGGTGTTGATGGAGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGAAAATGGGTAGCTGAAATTCGAGAACCAAACAAACGTTCTCGAATTTGGTTAGGTTCCTATTCTACCCCTATCGCCGCCGCTAGAGCTTACGACACCGCAGTTTTCTATCTCCGGGGACCATCAGCTCGTCTCAATTTCCCAGAGCTACTCGCCGGTGAAAACAACGCGGTTGTTGGTGGTGGTGGTGATATGTCGGCGGCTACTATTAGAAAGAAAGCTACTGAAGTTGGTGCTAGGGTTGATGCTCTTCAAGCAGATGTTAATCATAATCATCATCACCTTCAGCATAACCGGAACCAGCATCATCGCATGATACCGGTTCCGGAGTTACTTGAAGGTGATGGTTCTGGTGATTTTGCTGAGAGAGTTGATTTGAATAAGATTCCTGAACCAGAGAGTTCTGATGAGTGGGATGTTAATTGA
Protein sequence

>Msa0836050

MDGGRGKGERKRNGGGGVDGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLAGENNAVVGGGGDMSAATIRKKATEVGARVDALQADVNHNHHHLQHNRNQHHRMIPVPELLEGDGSGDFAERVDLNKIPEPESSDEWDVN*