Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105310 | XP_013466499.1 | 47.030 | 202 | 91 | 5 | 17 | 202 | 188 | 389 | 9.06e-26 | 113 |
| Msa0105310 | XP_013466499.1 | 98.485 | 132 | 2 | 0 | 1 | 132 | 1 | 132 | 1.51e-84 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105310 | sp|F4HZQ7|WTR5_ARATH | 52.113 | 142 | 54 | 1 | 18 | 145 | 10 | 151 | 2.97e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105310 | A0A072VQX4 | 47.030 | 202 | 91 | 5 | 17 | 202 | 188 | 389 | 4.33e-26 | 113 |
| Msa0105310 | A0A072VQX4 | 98.485 | 132 | 2 | 0 | 1 | 132 | 1 | 132 | 7.20e-85 | 265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011700 | Msa0105310 | 0.952867 | 9.577541e-111 | -8.615850e-47 |
| Msa0069370 | Msa0105310 | 0.914476 | 1.832342e-84 | -8.615850e-47 |
| Msa0105310 | Msa0151650 | 0.888800 | 4.281322e-73 | -8.615850e-47 |
| Msa0105310 | Msa0264230 | 0.803467 | 3.437529e-49 | -8.615850e-47 |
| Msa0105310 | Msa1019420 | 0.803126 | 4.044719e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105310 | MtrunA17_Chr1g0160181 | 98.485 | 132 | 2 | 0 | 1 | 132 | 1 | 132 | 1.39e-88 | 265 |
| Msa0105310 | MtrunA17_Chr1g0160181 | 47.030 | 202 | 91 | 5 | 17 | 202 | 188 | 389 | 8.33e-30 | 113 |
| Msa0105310 | MtrunA17_Chr1g0177221 | 74.627 | 134 | 34 | 0 | 1 | 134 | 1 | 134 | 2.35e-68 | 209 |
| Msa0105310 | MtrunA17_Chr3g0114701 | 69.919 | 123 | 37 | 0 | 10 | 132 | 1 | 123 | 4.89e-59 | 189 |
| Msa0105310 | MtrunA17_Chr3g0114731 | 63.025 | 119 | 44 | 0 | 14 | 132 | 14 | 132 | 2.32e-47 | 159 |
| Msa0105310 | MtrunA17_Chr3g0114711 | 61.864 | 118 | 45 | 0 | 15 | 132 | 11 | 128 | 5.67e-46 | 156 |
| Msa0105310 | MtrunA17_Chr1g0160171 | 53.020 | 149 | 56 | 1 | 7 | 141 | 5 | 153 | 3.67e-43 | 148 |
| Msa0105310 | MtrunA17_Chr3g0114691 | 48.966 | 145 | 60 | 1 | 11 | 141 | 13 | 157 | 3.51e-39 | 138 |
| Msa0105310 | MtrunA17_Chr7g0255561 | 36.216 | 185 | 97 | 2 | 8 | 171 | 4 | 188 | 5.18e-36 | 130 |
| Msa0105310 | MtrunA17_Chr7g0255581 | 36.216 | 185 | 97 | 2 | 8 | 171 | 4 | 188 | 5.18e-36 | 130 |
| Msa0105310 | MtrunA17_Chr8g0354121 | 38.547 | 179 | 86 | 2 | 14 | 168 | 9 | 187 | 5.58e-36 | 129 |
| Msa0105310 | MtrunA17_Chr7g0263101 | 40.217 | 184 | 94 | 2 | 4 | 173 | 1 | 182 | 6.61e-36 | 129 |
| Msa0105310 | MtrunA17_Chr1g0182291 | 52.137 | 117 | 56 | 0 | 13 | 129 | 10 | 126 | 1.98e-35 | 127 |
| Msa0105310 | MtrunA17_Chr3g0081511 | 46.721 | 122 | 65 | 0 | 8 | 129 | 7 | 128 | 6.57e-33 | 121 |
| Msa0105310 | MtrunA17_Chr3g0081421 | 47.009 | 117 | 62 | 0 | 13 | 129 | 12 | 128 | 4.65e-32 | 119 |
| Msa0105310 | MtrunA17_Chr3g0142131 | 51.818 | 110 | 53 | 0 | 23 | 132 | 25 | 134 | 6.40e-30 | 113 |
| Msa0105310 | MtrunA17_Chr1g0155761 | 47.788 | 113 | 59 | 0 | 20 | 132 | 23 | 135 | 2.33e-29 | 112 |
| Msa0105310 | MtrunA17_Chr1g0172891 | 61.000 | 100 | 25 | 2 | 104 | 195 | 22 | 115 | 2.84e-29 | 105 |
| Msa0105310 | MtrunA17_Chr5g0404801 | 43.363 | 113 | 64 | 0 | 17 | 129 | 6 | 118 | 7.49e-25 | 94.4 |
| Msa0105310 | MtrunA17_Chr1g0186641 | 38.525 | 122 | 75 | 0 | 8 | 129 | 3 | 124 | 9.79e-25 | 99.0 |
| Msa0105310 | MtrunA17_Chr1g0186571 | 40.517 | 116 | 69 | 0 | 15 | 130 | 10 | 125 | 1.57e-23 | 95.9 |
| Msa0105310 | MtrunA17_Chr1g0186611 | 40.000 | 115 | 69 | 0 | 14 | 128 | 12 | 126 | 3.82e-23 | 94.7 |
| Msa0105310 | MtrunA17_Chr1g0186561 | 36.975 | 119 | 75 | 0 | 14 | 132 | 12 | 130 | 4.68e-23 | 94.7 |
| Msa0105310 | MtrunA17_Chr1g0186601 | 36.522 | 115 | 73 | 0 | 14 | 128 | 12 | 126 | 1.48e-22 | 93.2 |
| Msa0105310 | MtrunA17_Chr6g0463971 | 36.364 | 132 | 76 | 2 | 1 | 132 | 6 | 129 | 2.10e-22 | 92.8 |
| Msa0105310 | MtrunA17_Chr1g0171301 | 36.522 | 115 | 73 | 0 | 14 | 128 | 12 | 126 | 4.45e-22 | 92.0 |
| Msa0105310 | MtrunA17_Chr7g0271561 | 40.000 | 110 | 66 | 0 | 21 | 130 | 10 | 119 | 5.16e-21 | 89.4 |
| Msa0105310 | MtrunA17_Chr5g0408031 | 37.391 | 115 | 72 | 0 | 18 | 132 | 10 | 124 | 5.44e-20 | 86.7 |
| Msa0105310 | MtrunA17_Chr6g0483401 | 45.545 | 101 | 55 | 0 | 27 | 127 | 19 | 119 | 4.24e-19 | 84.0 |
| Msa0105310 | MtrunA17_Chr5g0408041 | 36.522 | 115 | 73 | 0 | 18 | 132 | 11 | 125 | 5.01e-19 | 84.0 |
| Msa0105310 | MtrunA17_Chr1g0177231 | 74.074 | 54 | 8 | 1 | 131 | 184 | 79 | 126 | 7.27e-19 | 78.6 |
| Msa0105310 | MtrunA17_Chr3g0129601 | 36.441 | 118 | 75 | 0 | 15 | 132 | 26 | 143 | 8.63e-19 | 83.2 |
| Msa0105310 | MtrunA17_Chr2g0284261 | 38.261 | 115 | 71 | 0 | 18 | 132 | 8 | 122 | 9.19e-19 | 82.8 |
| Msa0105310 | MtrunA17_Chr2g0278561 | 44.144 | 111 | 62 | 0 | 18 | 128 | 15 | 125 | 1.33e-18 | 82.8 |
| Msa0105310 | MtrunA17_Chr5g0408001 | 29.189 | 185 | 112 | 5 | 12 | 189 | 8 | 180 | 3.40e-18 | 81.6 |
| Msa0105310 | MtrunA17_Chr4g0059311 | 33.108 | 148 | 84 | 2 | 32 | 164 | 25 | 172 | 4.03e-18 | 80.9 |
| Msa0105310 | MtrunA17_Chr3g0126101 | 30.000 | 150 | 87 | 3 | 33 | 168 | 21 | 166 | 1.31e-16 | 76.6 |
| Msa0105310 | MtrunA17_Chr8g0334711 | 39.706 | 136 | 66 | 3 | 21 | 141 | 13 | 147 | 2.90e-16 | 73.9 |
| Msa0105310 | MtrunA17_Chr5g0407991 | 27.374 | 179 | 115 | 4 | 18 | 189 | 9 | 179 | 4.68e-16 | 75.5 |
| Msa0105310 | MtrunA17_Chr8g0334761 | 41.905 | 105 | 60 | 1 | 26 | 129 | 18 | 122 | 1.10e-15 | 74.3 |
| Msa0105310 | MtrunA17_Chr1g0184221 | 32.331 | 133 | 76 | 1 | 14 | 132 | 12 | 144 | 1.22e-15 | 74.3 |
| Msa0105310 | MtrunA17_Chr8g0369841 | 34.615 | 104 | 68 | 0 | 26 | 129 | 17 | 120 | 1.83e-15 | 73.6 |
| Msa0105310 | MtrunA17_Chr5g0407971 | 31.250 | 112 | 77 | 0 | 18 | 129 | 11 | 122 | 3.49e-15 | 72.8 |
| Msa0105310 | MtrunA17_Chr1g0164831 | 44.318 | 88 | 47 | 1 | 41 | 128 | 26 | 111 | 5.09e-15 | 72.4 |
| Msa0105310 | MtrunA17_Chr2g0278031 | 38.596 | 114 | 70 | 0 | 15 | 128 | 11 | 124 | 5.72e-15 | 68.6 |
| Msa0105310 | MtrunA17_Chr2g0290611 | 38.596 | 114 | 70 | 0 | 18 | 131 | 12 | 125 | 1.54e-14 | 70.9 |
| Msa0105310 | MtrunA17_Chr5g0428881 | 28.030 | 132 | 95 | 0 | 1 | 132 | 1 | 132 | 8.20e-14 | 68.9 |
| Msa0105310 | MtrunA17_Chr2g0278551 | 36.842 | 114 | 72 | 0 | 18 | 131 | 12 | 125 | 8.94e-14 | 68.9 |
| Msa0105310 | MtrunA17_Chr1g0211801 | 39.130 | 92 | 54 | 1 | 41 | 132 | 34 | 123 | 1.34e-13 | 67.8 |
| Msa0105310 | MtrunA17_Chr5g0413961 | 38.000 | 100 | 61 | 1 | 31 | 130 | 27 | 125 | 1.52e-13 | 68.2 |
| Msa0105310 | MtrunA17_Chr1g0160111 | 33.654 | 104 | 69 | 0 | 27 | 130 | 16 | 119 | 3.03e-13 | 67.4 |
| Msa0105310 | MtrunA17_Chr3g0129571 | 32.174 | 115 | 76 | 1 | 20 | 132 | 9 | 123 | 7.33e-13 | 66.2 |
| Msa0105310 | MtrunA17_Chr8g0383731 | 35.833 | 120 | 73 | 2 | 15 | 132 | 2 | 119 | 8.82e-13 | 65.9 |
| Msa0105310 | MtrunA17_Chr2g0310441 | 38.532 | 109 | 65 | 1 | 21 | 127 | 13 | 121 | 1.40e-12 | 65.5 |
| Msa0105310 | MtrunA17_Chr2g0278541 | 35.135 | 111 | 72 | 0 | 18 | 128 | 12 | 122 | 3.17e-12 | 64.3 |
| Msa0105310 | MtrunA17_Chr2g0332001 | 28.415 | 183 | 106 | 4 | 18 | 186 | 38 | 209 | 3.19e-12 | 64.3 |
| Msa0105310 | MtrunA17_Chr3g0126091 | 30.973 | 113 | 75 | 1 | 20 | 129 | 13 | 125 | 4.37e-12 | 63.9 |
| Msa0105310 | MtrunA17_Chr8g0334751 | 38.194 | 144 | 71 | 3 | 16 | 141 | 6 | 149 | 7.68e-12 | 63.2 |
| Msa0105310 | MtrunA17_Chr8g0334771 | 38.931 | 131 | 65 | 2 | 26 | 141 | 18 | 148 | 2.11e-11 | 62.0 |
| Msa0105310 | MtrunA17_Chr4g0073241 | 32.143 | 112 | 73 | 1 | 21 | 129 | 11 | 122 | 5.06e-11 | 60.8 |
| Msa0105310 | MtrunA17_Chr1g0182261 | 40.000 | 75 | 45 | 0 | 14 | 88 | 10 | 84 | 5.52e-11 | 59.7 |
| Msa0105310 | MtrunA17_Chr4g0050881 | 34.211 | 114 | 74 | 1 | 18 | 131 | 9 | 121 | 6.70e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105310 | AT1G21890.1 | 52.113 | 142 | 54 | 1 | 18 | 145 | 10 | 151 | 3.02e-41 | 144 |
| Msa0105310 | AT1G21890.2 | 52.113 | 142 | 54 | 1 | 18 | 145 | 10 | 151 | 6.46e-41 | 142 |
| Msa0105310 | AT4G08290.2 | 49.600 | 125 | 63 | 0 | 8 | 132 | 2 | 126 | 2.07e-40 | 139 |
| Msa0105310 | AT4G08290.1 | 50.407 | 123 | 61 | 0 | 8 | 130 | 2 | 124 | 1.36e-39 | 139 |
| Msa0105310 | AT4G08300.1 | 54.783 | 115 | 52 | 0 | 18 | 132 | 10 | 124 | 3.35e-39 | 138 |
| Msa0105310 | AT5G07050.1 | 43.396 | 159 | 73 | 2 | 1 | 145 | 3 | 158 | 7.10e-37 | 132 |
| Msa0105310 | AT1G44800.1 | 50.435 | 115 | 57 | 0 | 18 | 132 | 10 | 124 | 1.59e-36 | 131 |
| Msa0105310 | AT3G56620.1 | 40.678 | 177 | 91 | 1 | 15 | 177 | 7 | 183 | 1.55e-35 | 128 |
| Msa0105310 | AT2G37460.1 | 49.153 | 118 | 60 | 0 | 15 | 132 | 11 | 128 | 1.64e-34 | 126 |
| Msa0105310 | AT2G40900.1 | 50.000 | 118 | 59 | 0 | 15 | 132 | 7 | 124 | 3.49e-33 | 122 |
| Msa0105310 | AT2G39510.1 | 45.378 | 119 | 65 | 0 | 14 | 132 | 3 | 121 | 1.44e-31 | 118 |
| Msa0105310 | AT1G75500.1 | 46.903 | 113 | 60 | 0 | 20 | 132 | 21 | 133 | 1.32e-27 | 107 |
| Msa0105310 | AT1G75500.2 | 46.903 | 113 | 60 | 0 | 20 | 132 | 21 | 133 | 1.32e-27 | 107 |
| Msa0105310 | AT3G18200.2 | 39.370 | 127 | 70 | 1 | 1 | 127 | 24 | 143 | 3.37e-24 | 98.6 |
| Msa0105310 | AT5G13670.1 | 38.655 | 119 | 73 | 0 | 14 | 132 | 3 | 121 | 6.12e-24 | 97.8 |
| Msa0105310 | AT1G09380.1 | 41.441 | 111 | 65 | 0 | 20 | 130 | 9 | 119 | 2.10e-21 | 90.9 |
| Msa0105310 | AT3G53210.3 | 38.983 | 118 | 72 | 0 | 15 | 132 | 6 | 123 | 4.63e-21 | 88.2 |
| Msa0105310 | AT3G53210.1 | 38.983 | 118 | 72 | 0 | 15 | 132 | 6 | 123 | 7.97e-21 | 89.0 |
| Msa0105310 | AT2G37450.2 | 38.843 | 121 | 53 | 2 | 12 | 132 | 2 | 101 | 1.54e-20 | 87.8 |
| Msa0105310 | AT4G01440.4 | 43.299 | 97 | 55 | 0 | 36 | 132 | 27 | 123 | 6.40e-19 | 82.4 |
| Msa0105310 | AT4G01440.3 | 43.299 | 97 | 55 | 0 | 36 | 132 | 27 | 123 | 1.54e-18 | 82.4 |
| Msa0105310 | AT4G01440.1 | 43.299 | 97 | 55 | 0 | 36 | 132 | 27 | 123 | 1.82e-18 | 82.4 |
| Msa0105310 | AT5G45370.2 | 39.000 | 100 | 61 | 0 | 30 | 129 | 31 | 130 | 1.30e-17 | 80.1 |
| Msa0105310 | AT5G45370.4 | 39.000 | 100 | 61 | 0 | 30 | 129 | 31 | 130 | 1.30e-17 | 80.1 |
| Msa0105310 | AT5G45370.1 | 39.000 | 100 | 61 | 0 | 30 | 129 | 31 | 130 | 1.53e-17 | 79.7 |
| Msa0105310 | AT4G01450.3 | 42.157 | 102 | 58 | 1 | 31 | 131 | 21 | 122 | 5.55e-17 | 77.0 |
| Msa0105310 | AT4G01450.4 | 42.157 | 102 | 58 | 1 | 31 | 131 | 21 | 122 | 6.06e-17 | 77.0 |
| Msa0105310 | AT4G01450.1 | 42.157 | 102 | 58 | 1 | 31 | 131 | 21 | 122 | 8.85e-17 | 77.8 |
| Msa0105310 | AT4G01450.2 | 42.157 | 102 | 58 | 1 | 31 | 131 | 21 | 122 | 1.05e-16 | 77.4 |
| Msa0105310 | AT4G01430.1 | 39.286 | 112 | 66 | 1 | 21 | 132 | 13 | 122 | 1.38e-16 | 77.4 |
| Msa0105310 | AT3G30340.1 | 36.283 | 113 | 72 | 0 | 18 | 130 | 10 | 122 | 1.64e-16 | 77.0 |
| Msa0105310 | AT3G30340.2 | 36.283 | 113 | 72 | 0 | 18 | 130 | 10 | 122 | 1.76e-16 | 76.3 |
| Msa0105310 | AT4G01430.2 | 39.286 | 112 | 66 | 1 | 21 | 132 | 13 | 122 | 1.82e-16 | 76.6 |
| Msa0105310 | AT1G01070.1 | 40.000 | 95 | 57 | 0 | 36 | 130 | 33 | 127 | 8.82e-16 | 75.1 |
| Msa0105310 | AT4G28040.1 | 35.088 | 114 | 72 | 1 | 18 | 129 | 7 | 120 | 5.27e-15 | 72.8 |
| Msa0105310 | AT4G28040.5 | 35.088 | 114 | 72 | 1 | 18 | 129 | 7 | 120 | 5.27e-15 | 72.8 |
| Msa0105310 | AT4G28040.3 | 35.088 | 114 | 72 | 1 | 18 | 129 | 7 | 120 | 5.27e-15 | 72.8 |
| Msa0105310 | AT4G28040.4 | 35.088 | 114 | 72 | 1 | 18 | 129 | 7 | 120 | 5.27e-15 | 72.8 |
| Msa0105310 | AT4G28040.2 | 35.088 | 114 | 72 | 1 | 18 | 129 | 7 | 120 | 5.27e-15 | 72.8 |
| Msa0105310 | AT1G11450.3 | 41.053 | 95 | 56 | 0 | 36 | 130 | 33 | 127 | 9.07e-15 | 72.0 |
| Msa0105310 | AT1G11450.4 | 41.053 | 95 | 56 | 0 | 36 | 130 | 33 | 127 | 1.15e-14 | 71.6 |
| Msa0105310 | AT3G45870.1 | 31.356 | 118 | 77 | 1 | 12 | 129 | 9 | 122 | 9.83e-14 | 69.3 |
| Msa0105310 | AT3G45870.9 | 31.356 | 118 | 77 | 1 | 12 | 129 | 9 | 122 | 1.03e-13 | 68.6 |
| Msa0105310 | AT1G11460.1 | 28.743 | 167 | 88 | 4 | 36 | 186 | 33 | 184 | 1.44e-13 | 68.6 |
| Msa0105310 | AT3G45870.8 | 31.356 | 118 | 77 | 1 | 12 | 129 | 9 | 122 | 1.95e-13 | 68.2 |
| Msa0105310 | AT5G64700.2 | 36.441 | 118 | 75 | 0 | 15 | 132 | 4 | 121 | 4.55e-13 | 66.6 |
| Msa0105310 | AT5G64700.1 | 36.441 | 118 | 75 | 0 | 15 | 132 | 4 | 121 | 5.04e-13 | 67.0 |
| Msa0105310 | AT1G68170.2 | 29.167 | 120 | 85 | 0 | 8 | 127 | 2 | 121 | 2.47e-12 | 65.1 |
| Msa0105310 | AT2G37450.1 | 46.667 | 60 | 32 | 0 | 12 | 71 | 2 | 61 | 2.85e-12 | 64.7 |
| Msa0105310 | AT4G19185.1 | 34.615 | 104 | 68 | 0 | 26 | 129 | 28 | 131 | 2.92e-12 | 65.1 |
| Msa0105310 | AT1G11450.5 | 42.308 | 78 | 45 | 0 | 53 | 130 | 6 | 83 | 1.27e-11 | 62.8 |
| Msa0105310 | AT4G30420.2 | 32.710 | 107 | 69 | 1 | 26 | 129 | 16 | 122 | 1.61e-11 | 62.8 |
| Msa0105310 | AT4G30420.1 | 32.710 | 107 | 69 | 1 | 26 | 129 | 6 | 112 | 1.72e-11 | 62.8 |
| Msa0105310 | AT1G43650.1 | 34.783 | 115 | 75 | 0 | 18 | 132 | 6 | 120 | 3.17e-11 | 62.0 |
| Msa0105310 | AT1G43650.2 | 34.351 | 131 | 79 | 1 | 18 | 141 | 6 | 136 | 3.19e-11 | 61.2 |
| Msa0105310 | AT1G68170.1 | 31.373 | 102 | 70 | 0 | 26 | 127 | 10 | 111 | 7.98e-11 | 60.8 |
Find 35 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCACTGACATCAATTT+TGG | 0.080824 | 1_3:+13746217 | None:intergenic |
| GGAGGAGTGGTGGTGGTTAC+AGG | 0.216451 | 1_3:-13746350 | Msa0105310:CDS |
| CATCTTTCTTCAGGAAAATT+AGG | 0.275519 | 1_3:-13748833 | Msa0105310:intron |
| ACTGCTTCTCTGTCTTTGTT+TGG | 0.323919 | 1_3:+13746165 | None:intergenic |
| CAGGATTGTACCTAGTTGTA+TGG | 0.359172 | 1_3:-13746331 | Msa0105310:CDS |
| CTTATCCTAAGTTTACAGTT+TGG | 0.384578 | 1_3:-13749297 | Msa0105310:CDS |
| AGTTTACAGTTTGGTTCAGC+TGG | 0.393812 | 1_3:-13749288 | Msa0105310:CDS |
| AGTGACTCATACCCTTGTTA+AGG | 0.399888 | 1_3:+13749241 | None:intergenic |
| GTAGTTGTTGGTGTCCTTGT+TGG | 0.418519 | 1_3:+13746252 | None:intergenic |
| TGATGATAATAAACCTCAAT+TGG | 0.418992 | 1_3:-13746201 | Msa0105310:CDS |
| TTTATGTACATCAGCATTGT+TGG | 0.425034 | 1_3:-13746371 | Msa0105310:intron |
| TGGAATGTATGTTCTGACTA+TGG | 0.441328 | 1_3:-13749268 | Msa0105310:CDS |
| GTGACTCATACCCTTGTTAA+GGG | 0.442207 | 1_3:+13749242 | None:intergenic |
| GGACAGTAATTGGTAGTTGT+TGG | 0.445972 | 1_3:+13746240 | None:intergenic |
| AAATATCCGAACTGTCATCT+TGG | 0.447695 | 1_3:+13748809 | None:intergenic |
| GAATGGAATAATACCTTTCA+AGG | 0.448107 | 1_3:+13749157 | None:intergenic |
| TAGTTGTTGGTGTCCTTGTT+GGG | 0.461873 | 1_3:+13746253 | None:intergenic |
| TCTTCAACTATGACCAATTG+AGG | 0.473820 | 1_3:+13746188 | None:intergenic |
| AATATCCGAACTGTCATCTT+GGG | 0.484399 | 1_3:+13748810 | None:intergenic |
| AGGATTGTACCTAGTTGTAT+GGG | 0.494699 | 1_3:-13746330 | Msa0105310:CDS |
| TTGATTTGCCCCATACAACT+AGG | 0.512014 | 1_3:+13746321 | None:intergenic |
| CTGAACCAAACTGTAAACTT+AGG | 0.516654 | 1_3:+13749292 | None:intergenic |
| TATTGCAAGTACAAAGGTGA+TGG | 0.540410 | 1_3:+13748538 | None:intergenic |
| CATTGTTGGAGGAGTGGTGG+TGG | 0.540667 | 1_3:-13746357 | Msa0105310:CDS |
| ATGTACATCAGCATTGTTGG+AGG | 0.542794 | 1_3:-13746368 | Msa0105310:intron |
| GACTATGGATGCCCTTAACA+AGG | 0.543038 | 1_3:-13749253 | Msa0105310:CDS |
| TTAGGCCCAAGATGACAGTT+CGG | 0.551486 | 1_3:-13748815 | Msa0105310:CDS |
| TACAAAGGTGATGGAAGGTA+CGG | 0.559640 | 1_3:+13748547 | None:intergenic |
| TTTGTGAGAAAGTTAGTGCA+TGG | 0.575847 | 1_3:-13749344 | Msa0105310:CDS |
| CATCAGCATTGTTGGAGGAG+TGG | 0.613229 | 1_3:-13746363 | Msa0105310:intron |
| AGCAAAGGGAGCAAGAGCAA+TGG | 0.614349 | 1_3:+13749185 | None:intergenic |
| GCAAGTACAAAGGTGATGGA+AGG | 0.620947 | 1_3:+13748542 | None:intergenic |
| CAGCATTGTTGGAGGAGTGG+TGG | 0.646899 | 1_3:-13746360 | Msa0105310:CDS |
| ACTATGGATGCCCTTAACAA+GGG | 0.663685 | 1_3:-13749252 | Msa0105310:CDS |
| GGATTGTACCTAGTTGTATG+GGG | 0.683904 | 1_3:-13746329 | Msa0105310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGACATTAAAAAAAAAA+TGG | - | chr1_3:13746500-13746519 | Msa0105310:intron | 10.0% |
| !! | TGTAAAATTAGAAAAATATA+GGG | + | chr1_3:13747444-13747463 | None:intergenic | 10.0% |
| !! | TTGTAAAATTAGAAAAATAT+AGG | + | chr1_3:13747445-13747464 | None:intergenic | 10.0% |
| !!! | ATTTTTCTAATTTTACAAAT+TGG | - | chr1_3:13747447-13747466 | Msa0105310:intron | 10.0% |
| !! | AAATATTGTAATTTATCTAA+CGG | + | chr1_3:13747896-13747915 | None:intergenic | 10.0% |
| !!! | TTTCAAATGTTTTTTAAATA+CGG | - | chr1_3:13748143-13748162 | Msa0105310:intron | 10.0% |
| !! | AAAAAATAAAAAATTGAGTT+GGG | + | chr1_3:13748539-13748558 | None:intergenic | 10.0% |
| !! | TAAAAAATAAAAAATTGAGT+TGG | + | chr1_3:13748540-13748559 | None:intergenic | 10.0% |
| !! | AACATTAATTTACTTAACAT+AGG | + | chr1_3:13746790-13746809 | None:intergenic | 15.0% |
| !!! | CAAATTTTGAAAAAACTATA+AGG | + | chr1_3:13747412-13747431 | None:intergenic | 15.0% |
| !!! | AAATTTTAAAAAATACAAGC+AGG | + | chr1_3:13747474-13747493 | None:intergenic | 15.0% |
| !! | ATCTTATATTAATCAACATA+GGG | + | chr1_3:13747536-13747555 | None:intergenic | 15.0% |
| !! | TATCTTATATTAATCAACAT+AGG | + | chr1_3:13747537-13747556 | None:intergenic | 15.0% |
| !!! | TTCAAATGTTTTTTAAATAC+GGG | - | chr1_3:13748144-13748163 | Msa0105310:intron | 15.0% |
| !!! | TTTTTATTTTTTAAGAAGCT+AGG | - | chr1_3:13748547-13748566 | Msa0105310:CDS | 15.0% |
| !!! | TCATTAAAATCAAACATTTT+TGG | - | chr1_3:13749091-13749110 | Msa0105310:intron | 15.0% |
| !! | AATATTATGAGATAACATCA+TGG | + | chr1_3:13746564-13746583 | None:intergenic | 20.0% |
| !! | AAAAATTATTGCAAGTACAA+AGG | + | chr1_3:13746994-13747013 | None:intergenic | 20.0% |
| !!! | TTGTACTTGCAATAATTTTT+AGG | - | chr1_3:13746994-13747013 | Msa0105310:intron | 20.0% |
| !! | ACAACATATATATATAGCTA+GGG | + | chr1_3:13747136-13747155 | None:intergenic | 20.0% |
| !! | CAACACTTAATTAATATCAT+TGG | - | chr1_3:13747207-13747226 | Msa0105310:intron | 20.0% |
| !! | AAATGAACATCAAATACTAT+AGG | - | chr1_3:13747303-13747322 | Msa0105310:intron | 20.0% |
| !! | AATGAACATCAAATACTATA+GGG | - | chr1_3:13747304-13747323 | Msa0105310:intron | 20.0% |
| !! | TTACTTTCAAACTATCAAAT+TGG | - | chr1_3:13747385-13747404 | Msa0105310:intron | 20.0% |
| !!! | TTTATTTTGTTTGAGTAGAT+TGG | - | chr1_3:13747559-13747578 | Msa0105310:intron | 20.0% |
| !!! | TTGTTAAAAGTATAAGTTTG+TGG | + | chr1_3:13748101-13748120 | None:intergenic | 20.0% |
| !!! | TTTCTTCTAATGTTTTATAC+AGG | - | chr1_3:13748619-13748638 | Msa0105310:CDS | 20.0% |
| !!! | TTCTTCTAATGTTTTATACA+GGG | - | chr1_3:13748620-13748639 | Msa0105310:CDS | 20.0% |
| !!! | TATGAGTCACTATATTTTTG+TGG | - | chr1_3:13746294-13746313 | Msa0105310:CDS | 25.0% |
| ! | GAGTGCTAAAAAAATCAATT+AGG | - | chr1_3:13746624-13746643 | Msa0105310:intron | 25.0% |
| ! | AAAATCAATTAGGTTACTTG+TGG | - | chr1_3:13746634-13746653 | Msa0105310:intron | 25.0% |
| ! | GATGAAGAAATACACAAATA+TGG | + | chr1_3:13746674-13746693 | None:intergenic | 25.0% |
| ! | CACAACATATATATATAGCT+AGG | + | chr1_3:13747137-13747156 | None:intergenic | 25.0% |
| ! | GTAAGTTCACAAATACATAT+TGG | - | chr1_3:13747824-13747843 | Msa0105310:intron | 25.0% |
| !! | TTTATCTAACGGTTTAAAAC+CGG | + | chr1_3:13747885-13747904 | None:intergenic | 25.0% |
| ! | ACATAAACTTCTATTGTTGA+AGG | + | chr1_3:13747965-13747984 | None:intergenic | 25.0% |
| !!! | ATAATATGTGTTGACTTTTG+AGG | - | chr1_3:13748006-13748025 | Msa0105310:intron | 25.0% |
| ! | AACAATTTCTAATCAATTGC+AGG | - | chr1_3:13748181-13748200 | Msa0105310:intron | 25.0% |
| ! | CAATAATGAAATTGCTCTTT+AGG | - | chr1_3:13748380-13748399 | Msa0105310:intron | 25.0% |
| !!! | TTGATAGGTTATTGCTTTTT+AGG | + | chr1_3:13748483-13748502 | None:intergenic | 25.0% |
| ! | AAGCAATAACCTATCAATAA+TGG | - | chr1_3:13748486-13748505 | Msa0105310:intron | 25.0% |
| ! | ACTTGTTTAATGTTGTAACT+TGG | + | chr1_3:13748574-13748593 | None:intergenic | 25.0% |
| !! | GCAATTCAATTTTATGTTCA+AGG | - | chr1_3:13748656-13748675 | Msa0105310:intron | 25.0% |
| !! | AAATAGTCAAATTAGTCTCA+TGG | - | chr1_3:13748853-13748872 | Msa0105310:intron | 25.0% |
| ! | GTACATAAAACAAATCAAAG+TGG | + | chr1_3:13749141-13749160 | None:intergenic | 25.0% |
| ! | TGATGATAATAAACCTCAAT+TGG | - | chr1_3:13749322-13749341 | Msa0105310:CDS | 25.0% |
| CTTATCCTAAGTTTACAGTT+TGG | - | chr1_3:13746226-13746245 | Msa0105310:CDS | 30.0% | |
| CTTTCAAGGAAAAAAGCAAA+GGG | + | chr1_3:13746355-13746374 | None:intergenic | 30.0% | |
| GAATGGAATAATACCTTTCA+AGG | + | chr1_3:13746369-13746388 | None:intergenic | 30.0% | |
| AGATTTCATGAAGAAGAGAA+TGG | + | chr1_3:13746386-13746405 | None:intergenic | 30.0% | |
| GCATGCAAAAATATGTATGT+AGG | + | chr1_3:13746445-13746464 | None:intergenic | 30.0% | |
| GTATTTCTTCATCTTTCTTC+AGG | - | chr1_3:13746681-13746700 | Msa0105310:intron | 30.0% | |
| CATCTTTCTTCAGGAAAATT+AGG | - | chr1_3:13746690-13746709 | Msa0105310:intron | 30.0% | |
| TATATATGTTGTGTCCTTCA+CGG | - | chr1_3:13747144-13747163 | Msa0105310:intron | 30.0% | |
| ATTGGAACGCATGAAAATTA+AGG | - | chr1_3:13747577-13747596 | Msa0105310:intron | 30.0% | |
| CGCATGAAAATTAAGGAAAT+AGG | - | chr1_3:13747584-13747603 | Msa0105310:intron | 30.0% | |
| TTTCTAATGGCACTATACAA+AGG | - | chr1_3:13747653-13747672 | Msa0105310:intron | 30.0% | |
| AAAGTCGATAATAGAGGATT+CGG | + | chr1_3:13747853-13747872 | None:intergenic | 30.0% | |
| !! | ATCCTCTATTATCGACTTTA+TGG | - | chr1_3:13747854-13747873 | Msa0105310:intron | 30.0% |
| ! | CAGTGTTGTAACTATTTTCA+TGG | - | chr1_3:13748277-13748296 | Msa0105310:intron | 30.0% |
| ACTCTTTGCTTCATTATATG+CGG | - | chr1_3:13748343-13748362 | Msa0105310:intron | 30.0% | |
| TTAAAAGCAGTCACAAAAAC+TGG | + | chr1_3:13748704-13748723 | None:intergenic | 30.0% | |
| GTGACTATAATCATACGTAA+AGG | + | chr1_3:13748728-13748747 | None:intergenic | 30.0% | |
| TATGATTATAGTCACAGCAT+TGG | - | chr1_3:13748733-13748752 | Msa0105310:intron | 30.0% | |
| GTATTATATTATACCTTCCG+AGG | + | chr1_3:13748787-13748806 | None:intergenic | 30.0% | |
| AAGTTGTATGAATGAGAAGT+GGG | + | chr1_3:13749045-13749064 | None:intergenic | 30.0% | |
| TTTATGTACATCAGCATTGT+TGG | - | chr1_3:13749152-13749171 | Msa0105310:intron | 30.0% | |
| ! | TCATCACTGACATCAATTTT+GGG | + | chr1_3:13749308-13749327 | None:intergenic | 30.0% |
| ! | ATCATCACTGACATCAATTT+TGG | + | chr1_3:13749309-13749328 | None:intergenic | 30.0% |
| TTTGTGAGAAAGTTAGTGCA+TGG | - | chr1_3:13746179-13746198 | Msa0105310:CDS | 35.0% | |
| CTGAACCAAACTGTAAACTT+AGG | + | chr1_3:13746234-13746253 | None:intergenic | 35.0% | |
| TGGAATGTATGTTCTGACTA+TGG | - | chr1_3:13746255-13746274 | Msa0105310:CDS | 35.0% | |
| CCTTTCAAGGAAAAAAGCAA+AGG | + | chr1_3:13746356-13746375 | None:intergenic | 35.0% | |
| !!! | CCTTTGCTTTTTTCCTTGAA+AGG | - | chr1_3:13746353-13746372 | Msa0105310:CDS | 35.0% |
| AGGTCACATGAGTATATGAA+TGG | + | chr1_3:13746425-13746444 | None:intergenic | 35.0% | |
| ! | ATTTTTGCATGCTCTGATGA+AGG | - | chr1_3:13746453-13746472 | Msa0105310:intron | 35.0% |
| ! | TTTTTGCATGCTCTGATGAA+GGG | - | chr1_3:13746454-13746473 | Msa0105310:intron | 35.0% |
| !! | TTTTTAGCACTCAATGTAGC+TGG | + | chr1_3:13746616-13746635 | None:intergenic | 35.0% |
| AATATCCGAACTGTCATCTT+GGG | + | chr1_3:13746716-13746735 | None:intergenic | 35.0% | |
| AAATATCCGAACTGTCATCT+TGG | + | chr1_3:13746717-13746736 | None:intergenic | 35.0% | |
| TATTGCAAGTACAAAGGTGA+TGG | + | chr1_3:13746988-13747007 | None:intergenic | 35.0% | |
| ATATTGCTGACGAACTTAGT+AGG | - | chr1_3:13747075-13747094 | Msa0105310:intron | 35.0% | |
| !!! | GATCATTCACATTTTCAGGT+TGG | + | chr1_3:13747724-13747743 | None:intergenic | 35.0% |
| CACCATAAAGTCGATAATAG+AGG | + | chr1_3:13747859-13747878 | None:intergenic | 35.0% | |
| !! | CTCTATTATCGACTTTATGG+TGG | - | chr1_3:13747857-13747876 | Msa0105310:intron | 35.0% |
| CACTACTTAATCTGAAGATG+AGG | - | chr1_3:13748071-13748090 | Msa0105310:intron | 35.0% | |
| AACGGTAGCTAACTACAATT+CGG | + | chr1_3:13748419-13748438 | None:intergenic | 35.0% | |
| AGGCTCTGTGATTAAAACTA+TGG | - | chr1_3:13748676-13748695 | Msa0105310:intron | 35.0% | |
| GGCTCTGTGATTAAAACTAT+GGG | - | chr1_3:13748677-13748696 | Msa0105310:intron | 35.0% | |
| TTATATTATACCTTCCGAGG+TGG | + | chr1_3:13748784-13748803 | None:intergenic | 35.0% | |
| ! | GAGTGTTAGAAACACGTTTT+TGG | + | chr1_3:13748809-13748828 | None:intergenic | 35.0% |
| CAAGTTGTATGAATGAGAAG+TGG | + | chr1_3:13749046-13749065 | None:intergenic | 35.0% | |
| AGGATTGTACCTAGTTGTAT+GGG | - | chr1_3:13749193-13749212 | Msa0105310:CDS | 35.0% | |
| !!! | TTGTTGGGAGATTTTTTGTG+GGG | + | chr1_3:13749258-13749277 | None:intergenic | 35.0% |
| !!! | CTTGTTGGGAGATTTTTTGT+GGG | + | chr1_3:13749259-13749278 | None:intergenic | 35.0% |
| !! | TCAATTTTGGGGACAGTAAT+TGG | + | chr1_3:13749296-13749315 | None:intergenic | 35.0% |
| ! | CATCACTGACATCAATTTTG+GGG | + | chr1_3:13749307-13749326 | None:intergenic | 35.0% |
| TCTTCAACTATGACCAATTG+AGG | + | chr1_3:13749338-13749357 | None:intergenic | 35.0% | |
| ! | AGTTTACAGTTTGGTTCAGC+TGG | - | chr1_3:13746235-13746254 | Msa0105310:CDS | 40.0% |
| ACTATGGATGCCCTTAACAA+GGG | - | chr1_3:13746271-13746290 | Msa0105310:CDS | 40.0% | |
| GTGACTCATACCCTTGTTAA+GGG | + | chr1_3:13746284-13746303 | None:intergenic | 40.0% | |
| AGTGACTCATACCCTTGTTA+AGG | + | chr1_3:13746285-13746304 | None:intergenic | 40.0% | |
| ! | TGATCAGTGCTTCACGTTTT+TGG | - | chr1_3:13746908-13746927 | Msa0105310:intron | 40.0% |
| ! | GATCAGTGCTTCACGTTTTT+GGG | - | chr1_3:13746909-13746928 | Msa0105310:intron | 40.0% |
| ! | ATCAGTGCTTCACGTTTTTG+GGG | - | chr1_3:13746910-13746929 | Msa0105310:intron | 40.0% |
| !! | TACAAAGGTGATGGAAGGTA+CGG | + | chr1_3:13746979-13746998 | None:intergenic | 40.0% |
| TTAATTAGCATGCGTGTGAG+TGG | + | chr1_3:13747247-13747266 | None:intergenic | 40.0% | |
| ! | TCTTGGAGGTGCATTTCTAA+TGG | - | chr1_3:13747640-13747659 | Msa0105310:intron | 40.0% |
| GTCCTGTTCTTCAAATTGCT+GGG | - | chr1_3:13747675-13747694 | Msa0105310:intron | 40.0% | |
| !!! | ATTTTCAGGTTGGTGCATCT+GGG | + | chr1_3:13747714-13747733 | None:intergenic | 40.0% |
| ! | GTGGGATCATTCACATTTTC+AGG | + | chr1_3:13747728-13747747 | None:intergenic | 40.0% |
| GAAAATGTGAATGATCCCAC+TGG | - | chr1_3:13747728-13747747 | Msa0105310:intron | 40.0% | |
| ACTACAATTCGGCACTTGAT+AGG | + | chr1_3:13748408-13748427 | None:intergenic | 40.0% | |
| ACCTCAAACTCGTTGTCAAA+CGG | + | chr1_3:13748437-13748456 | None:intergenic | 40.0% | |
| CTCATTGGGCCATTATTGAT+AGG | + | chr1_3:13748498-13748517 | None:intergenic | 40.0% | |
| ! | TGAGTTTAGATGGGCTCATT+GGG | + | chr1_3:13748512-13748531 | None:intergenic | 40.0% |
| TTGGGTCTGTGAGTTTAGAT+GGG | + | chr1_3:13748521-13748540 | None:intergenic | 40.0% | |
| ATGTACATCAGCATTGTTGG+AGG | - | chr1_3:13749155-13749174 | Msa0105310:intron | 40.0% | |
| CAGGATTGTACCTAGTTGTA+TGG | - | chr1_3:13749192-13749211 | Msa0105310:CDS | 40.0% | |
| GGATTGTACCTAGTTGTATG+GGG | - | chr1_3:13749194-13749213 | Msa0105310:CDS | 40.0% | |
| !! | TTGATTTGCCCCATACAACT+AGG | + | chr1_3:13749205-13749224 | None:intergenic | 40.0% |
| !!! | CCTTGTTGGGAGATTTTTTG+TGG | + | chr1_3:13749260-13749279 | None:intergenic | 40.0% |
| CCACAAAAAATCTCCCAACA+AGG | - | chr1_3:13749257-13749276 | Msa0105310:CDS | 40.0% | |
| ! | TAGTTGTTGGTGTCCTTGTT+GGG | + | chr1_3:13749273-13749292 | None:intergenic | 40.0% |
| ! | GGACAGTAATTGGTAGTTGT+TGG | + | chr1_3:13749286-13749305 | None:intergenic | 40.0% |
| ACTGCTTCTCTGTCTTTGTT+TGG | + | chr1_3:13749361-13749380 | None:intergenic | 40.0% | |
| GACTATGGATGCCCTTAACA+AGG | - | chr1_3:13746270-13746289 | Msa0105310:CDS | 45.0% | |
| TTAGGCCCAAGATGACAGTT+CGG | - | chr1_3:13746708-13746727 | Msa0105310:intron | 45.0% | |
| !! | GCAAGTACAAAGGTGATGGA+AGG | + | chr1_3:13746984-13747003 | None:intergenic | 45.0% |
| GGTCCTGTTCTTCAAATTGC+TGG | - | chr1_3:13747674-13747693 | Msa0105310:intron | 45.0% | |
| GACCCAGCAATTTGAAGAAC+AGG | + | chr1_3:13747680-13747699 | None:intergenic | 45.0% | |
| !!! | CATTTTCAGGTTGGTGCATC+TGG | + | chr1_3:13747715-13747734 | None:intergenic | 45.0% |
| TGAGAAGGAACAATGCACCA+AGG | + | chr1_3:13747766-13747785 | None:intergenic | 45.0% | |
| GGTGCATTGTTCCTTCTCAT+TGG | - | chr1_3:13747767-13747786 | Msa0105310:intron | 45.0% | |
| ! | TTCCTTCTCATTGGTTGTGC+TGG | - | chr1_3:13747776-13747795 | Msa0105310:intron | 45.0% |
| !! | TATCGACTTTATGGTGGAGC+CGG | - | chr1_3:13747863-13747882 | Msa0105310:intron | 45.0% |
| ACCAATAAAGCAAACCCACG+TGG | + | chr1_3:13748246-13748265 | None:intergenic | 45.0% | |
| ! | AAGCAAAGAGTCTAGAGTCC+AGG | + | chr1_3:13748334-13748353 | None:intergenic | 45.0% |
| ACCGTTTGACAACGAGTTTG+AGG | - | chr1_3:13748433-13748452 | Msa0105310:intron | 45.0% | |
| ! | GTGAGTTTAGATGGGCTCAT+TGG | + | chr1_3:13748513-13748532 | None:intergenic | 45.0% |
| GTTGGGTCTGTGAGTTTAGA+TGG | + | chr1_3:13748522-13748541 | None:intergenic | 45.0% | |
| ! | GTAGTTGTTGGTGTCCTTGT+TGG | + | chr1_3:13749274-13749293 | None:intergenic | 45.0% |
| !! | TTTGTAATTTATTTATTTAT+AGG | - | chr1_3:13746877-13746896 | Msa0105310:intron | 5.0% |
| !!! | ATTTTTTAAAATTTATGAAT+TGG | - | chr1_3:13747480-13747499 | Msa0105310:intron | 5.0% |
| !!! | TAATTTTAAATTTATCAATT+TGG | - | chr1_3:13747509-13747528 | Msa0105310:intron | 5.0% |
| AGCAAAGGGAGCAAGAGCAA+TGG | + | chr1_3:13746341-13746360 | None:intergenic | 50.0% | |
| CTTAGAACTACCCATGCTCC+TGG | + | chr1_3:13747179-13747198 | None:intergenic | 50.0% | |
| GGATGCCAAGCCAAAGTGAT+TGG | - | chr1_3:13747605-13747624 | Msa0105310:intron | 50.0% | |
| CTGTGCCAATCACTTTGGCT+TGG | + | chr1_3:13747613-13747632 | None:intergenic | 50.0% | |
| AGCCAAAGTGATTGGCACAG+TGG | - | chr1_3:13747613-13747632 | Msa0105310:intron | 50.0% | |
| CACCACTGTGCCAATCACTT+TGG | + | chr1_3:13747618-13747637 | None:intergenic | 50.0% | |
| ATTGGCACAGTGGTGAGTCT+TGG | - | chr1_3:13747623-13747642 | Msa0105310:intron | 50.0% | |
| !! | ATGATCCCACTGGTTCACAC+TGG | - | chr1_3:13747738-13747757 | Msa0105310:intron | 50.0% |
| AGCCAGCACAACCAATGAGA+AGG | + | chr1_3:13747781-13747800 | None:intergenic | 50.0% | |
| AGAGATGTCACTAGCCACGT+GGG | - | chr1_3:13748229-13748248 | Msa0105310:intron | 50.0% | |
| ! | GCCACGTGGGTTTGCTTTAT+TGG | - | chr1_3:13748242-13748261 | Msa0105310:intron | 50.0% |
| CTCTCAGAGAAACTCCACCT+CGG | - | chr1_3:13748767-13748786 | Msa0105310:intron | 50.0% | |
| CATCAGCATTGTTGGAGGAG+TGG | - | chr1_3:13749160-13749179 | Msa0105310:intron | 50.0% | |
| ! | GATCCCACTTCCAGGAGCAT+GGG | - | chr1_3:13747166-13747185 | Msa0105310:intron | 55.0% |
| CTACCCATGCTCCTGGAAGT+GGG | + | chr1_3:13747172-13747191 | None:intergenic | 55.0% | |
| ACTACCCATGCTCCTGGAAG+TGG | + | chr1_3:13747173-13747192 | None:intergenic | 55.0% | |
| AGGAGCCAGTGTGAACCAGT+GGG | + | chr1_3:13747746-13747765 | None:intergenic | 55.0% | |
| AAGGAGCCAGTGTGAACCAG+TGG | + | chr1_3:13747747-13747766 | None:intergenic | 55.0% | |
| !! | ACTGGTTCACACTGGCTCCT+TGG | - | chr1_3:13747746-13747765 | Msa0105310:intron | 55.0% |
| GTGGCTAGTGACATCTCTGC+TGG | + | chr1_3:13748227-13748246 | None:intergenic | 55.0% | |
| CAGAGATGTCACTAGCCACG+TGG | - | chr1_3:13748228-13748247 | Msa0105310:intron | 55.0% | |
| ! | ACACCCTGAAGCCTGGTCTT+TGG | - | chr1_3:13748307-13748326 | Msa0105310:intron | 55.0% |
| ! | CACCCTGAAGCCTGGTCTTT+GGG | - | chr1_3:13748308-13748327 | Msa0105310:intron | 55.0% |
| CGAGGTGGAGTTTCTCTGAG+AGG | + | chr1_3:13748769-13748788 | None:intergenic | 55.0% | |
| CAGAGAAACTCCACCTCGGA+AGG | - | chr1_3:13748771-13748790 | Msa0105310:intron | 55.0% | |
| CAGCATTGTTGGAGGAGTGG+TGG | - | chr1_3:13749163-13749182 | Msa0105310:intron | 55.0% | |
| CATTGTTGGAGGAGTGGTGG+TGG | - | chr1_3:13749166-13749185 | Msa0105310:intron | 55.0% | |
| CCTGGAAGTGGGATCCGTGA+AGG | + | chr1_3:13747161-13747180 | None:intergenic | 60.0% | |
| CCTTCACGGATCCCACTTCC+AGG | - | chr1_3:13747158-13747177 | Msa0105310:intron | 60.0% | |
| GGATCCCACTTCCAGGAGCA+TGG | - | chr1_3:13747165-13747184 | Msa0105310:intron | 60.0% | |
| GGCACAGTGGTGAGTCTTGG+AGG | - | chr1_3:13747626-13747645 | Msa0105310:intron | 60.0% | |
| AGCGCAAACACCCTGAAGCC+TGG | - | chr1_3:13748300-13748319 | Msa0105310:intron | 60.0% | |
| GGCCCAAAGACCAGGCTTCA+GGG | + | chr1_3:13748313-13748332 | None:intergenic | 60.0% | |
| AGGCCCAAAGACCAGGCTTC+AGG | + | chr1_3:13748314-13748333 | None:intergenic | 60.0% | |
| ! | TGAAGCCTGGTCTTTGGGCC+TGG | - | chr1_3:13748313-13748332 | Msa0105310:intron | 60.0% |
| AGAGTCCAGGCCCAAAGACC+AGG | + | chr1_3:13748321-13748340 | None:intergenic | 60.0% | |
| !! | GGAGGAGTGGTGGTGGTTAC+AGG | - | chr1_3:13749173-13749192 | Msa0105310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 13746163 | 13749382 | 13746163 | ID=Msa0105310;Name=Msa0105310 |
| chr1_3 | mRNA | 13746163 | 13749382 | 13746163 | ID=Msa0105310-mRNA-1;Parent=Msa0105310;Name=Msa0105310-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|4|0|202 |
| chr1_3 | exon | 13749171 | 13749382 | 13749171 | ID=Msa0105310-mRNA-1:exon:5422;Parent=Msa0105310-mRNA-1 |
| chr1_3 | exon | 13748780 | 13748842 | 13748780 | ID=Msa0105310-mRNA-1:exon:5421;Parent=Msa0105310-mRNA-1 |
| chr1_3 | exon | 13748530 | 13748646 | 13748530 | ID=Msa0105310-mRNA-1:exon:5420;Parent=Msa0105310-mRNA-1 |
| chr1_3 | exon | 13746163 | 13746379 | 13746163 | ID=Msa0105310-mRNA-1:exon:5419;Parent=Msa0105310-mRNA-1 |
| chr1_3 | CDS | 13749171 | 13749382 | 13749171 | ID=Msa0105310-mRNA-1:cds;Parent=Msa0105310-mRNA-1 |
| chr1_3 | CDS | 13748780 | 13748842 | 13748780 | ID=Msa0105310-mRNA-1:cds;Parent=Msa0105310-mRNA-1 |
| chr1_3 | CDS | 13748530 | 13748646 | 13748530 | ID=Msa0105310-mRNA-1:cds;Parent=Msa0105310-mRNA-1 |
| chr1_3 | CDS | 13746163 | 13746379 | 13746163 | ID=Msa0105310-mRNA-1:cds;Parent=Msa0105310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
