AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151650 MtrunA17_Chr1g0160181 97.159 352 10 0 1 352 38 389 0.0 706
Msa0151650 MtrunA17_Chr3g0114701 68.091 351 107 1 1 346 29 379 1.54e-165 467
Msa0151650 MtrunA17_Chr1g0177221 83.043 230 36 1 1 230 38 264 2.22e-141 401
Msa0151650 MtrunA17_Chr3g0114731 51.811 359 158 6 2 352 39 390 2.43e-125 365
Msa0151650 MtrunA17_Chr3g0114711 49.862 363 142 5 1 326 34 393 6.66e-118 347
Msa0151650 MtrunA17_Chr3g0114691 47.239 326 165 3 1 325 40 359 3.69e-108 322
Msa0151650 MtrunA17_Chr1g0160171 49.231 325 156 6 1 325 36 351 4.24e-108 321
Msa0151650 MtrunA17_Chr7g0255561 48.026 304 155 2 3 304 36 338 1.33e-104 312
Msa0151650 MtrunA17_Chr7g0255581 48.026 304 155 2 3 304 36 338 1.33e-104 312
Msa0151650 MtrunA17_Chr7g0263101 44.073 329 174 4 2 323 34 359 1.06e-101 305
Msa0151650 MtrunA17_Chr1g0182291 47.000 300 155 1 3 302 37 332 9.06e-101 301
Msa0151650 MtrunA17_Chr8g0354121 40.947 359 184 6 3 348 35 378 1.64e-94 286
Msa0151650 MtrunA17_Chr3g0081511 43.202 331 175 6 3 331 39 358 1.78e-90 276
Msa0151650 MtrunA17_Chr3g0081421 41.905 315 177 4 3 312 39 352 3.41e-89 273
Msa0151650 MtrunA17_Chr1g0186601 41.379 319 176 4 3 315 38 351 6.15e-84 258
Msa0151650 MtrunA17_Chr1g0186641 40.498 321 182 4 3 322 35 347 3.74e-83 256
Msa0151650 MtrunA17_Chr1g0186611 40.061 327 189 3 3 329 38 357 4.41e-82 253
Msa0151650 MtrunA17_Chr1g0171301 39.498 319 191 1 3 321 38 354 7.99e-82 253
Msa0151650 MtrunA17_Chr1g0186571 42.244 303 169 3 3 304 35 332 1.12e-80 250
Msa0151650 MtrunA17_Chr1g0186561 41.914 303 173 1 2 304 37 336 1.85e-79 247
Msa0151650 MtrunA17_Chr3g0142131 40.256 313 175 2 3 304 42 353 2.61e-75 237
Msa0151650 MtrunA17_Chr1g0155761 36.975 357 202 3 3 337 43 398 9.16e-75 236
Msa0151650 MtrunA17_Chr1g0184221 38.788 330 181 4 3 318 38 360 2.07e-74 234
Msa0151650 MtrunA17_Chr1g0172881 73.973 146 28 1 85 230 14 149 3.60e-72 221
Msa0151650 MtrunA17_Chr6g0483401 37.830 341 186 5 3 337 32 352 1.93e-70 224
Msa0151650 MtrunA17_Chr3g0129601 37.342 316 194 3 3 316 51 364 2.29e-66 213
Msa0151650 MtrunA17_Chr6g0463971 37.086 302 185 4 3 302 38 336 6.92e-65 209
Msa0151650 MtrunA17_Chr3g0126101 37.421 318 186 5 4 321 29 333 8.97e-65 209
Msa0151650 MtrunA17_Chr8g0334761 36.677 319 198 3 4 321 33 348 1.24e-64 209
Msa0151650 MtrunA17_Chr4g0059311 36.306 314 195 3 5 316 36 346 8.78e-64 206
Msa0151650 MtrunA17_Chr1g0164831 35.093 322 194 6 4 322 26 335 3.21e-63 204
Msa0151650 MtrunA17_Chr2g0278551 34.375 352 223 6 3 350 34 381 3.85e-61 201
Msa0151650 MtrunA17_Chr7g0271561 35.738 305 190 2 3 302 29 332 5.13e-61 200
Msa0151650 MtrunA17_Chr8g0383731 36.890 328 192 6 3 320 27 349 6.29e-61 199
Msa0151650 MtrunA17_Chr2g0284261 36.196 326 192 4 4 322 31 347 6.72e-61 199
Msa0151650 MtrunA17_Chr2g0278541 35.088 342 210 6 3 335 34 372 3.56e-60 198
Msa0151650 MtrunA17_Chr2g0278561 34.366 355 224 5 3 352 37 387 6.61e-60 197
Msa0151650 MtrunA17_Chr2g0310441 37.542 301 182 3 4 302 33 329 5.72e-59 194
Msa0151650 MtrunA17_Chr5g0413961 36.156 307 179 6 3 304 36 330 1.57e-58 192
Msa0151650 MtrunA17_Chr4g0050881 35.562 329 204 5 3 328 31 354 5.91e-58 191
Msa0151650 MtrunA17_Chr1g0172891 82.727 110 13 1 236 345 12 115 1.31e-57 182
Msa0151650 MtrunA17_Chr5g0408001 34.877 324 192 5 3 311 32 351 1.60e-57 191
Msa0151650 MtrunA17_Chr2g0332001 32.249 338 217 4 5 337 62 392 2.46e-57 191
Msa0151650 MtrunA17_Chr3g0129571 33.993 303 193 4 5 302 31 331 4.25e-57 189
Msa0151650 MtrunA17_Chr3g0129591 33.631 336 209 5 3 328 27 358 3.32e-56 187
Msa0151650 MtrunA17_Chr8g0334771 38.710 310 184 4 6 313 35 340 2.68e-55 185
Msa0151650 MtrunA17_Chr2g0290611 33.036 336 211 5 3 336 34 357 4.24e-55 184
Msa0151650 MtrunA17_Chr5g0408031 34.650 329 188 6 3 311 32 353 8.74e-54 181
Msa0151650 MtrunA17_Chr8g0334751 36.667 330 193 4 3 325 33 353 1.33e-53 180
Msa0151650 MtrunA17_Chr5g0408041 34.650 329 188 6 3 311 33 354 3.75e-53 180
Msa0151650 MtrunA17_Chr7g0227921 32.710 321 206 7 6 325 36 347 1.02e-52 178
Msa0151650 MtrunA17_Chr5g0413941 33.226 310 188 6 3 304 29 327 4.43e-52 176
Msa0151650 MtrunA17_Chr1g0160111 30.240 334 223 3 7 336 33 360 9.34e-52 176
Msa0151650 MtrunA17_Chr8g0369841 30.857 350 213 7 3 332 31 371 4.72e-51 174
Msa0151650 MtrunA17_Chr5g0413921 32.087 321 205 6 3 318 29 341 7.77e-51 172
Msa0151650 MtrunA17_Chr5g0407971 32.188 320 194 5 3 305 33 346 8.32e-51 173
Msa0151650 MtrunA17_Chr4g0050941 35.043 351 218 6 4 347 35 382 4.52e-50 172
Msa0151650 MtrunA17_Chr5g0407991 30.919 359 215 7 3 336 31 381 5.40e-50 171
Msa0151650 MtrunA17_Chr5g0413951 33.333 303 197 5 2 303 28 326 6.76e-50 170
Msa0151650 MtrunA17_Chr4g0050891 34.899 298 188 4 4 297 36 331 4.57e-49 168
Msa0151650 MtrunA17_Chr1g0177231 78.846 104 16 1 231 334 29 126 1.21e-48 160
Msa0151650 MtrunA17_Chr4g0073241 30.595 353 219 6 3 352 30 359 1.99e-48 167
Msa0151650 MtrunA17_Chr4g0051021 30.448 335 222 5 4 337 37 361 2.62e-48 167
Msa0151650 MtrunA17_Chr3g0129581 31.928 332 218 4 4 328 28 358 1.25e-47 164
Msa0151650 MtrunA17_Chr1g0150151 31.613 310 205 4 3 310 33 337 2.54e-47 164
Msa0151650 MtrunA17_Chr6g0451201 33.333 312 194 6 6 313 37 338 1.71e-46 161
Msa0151650 MtrunA17_Chr6g0451171 32.154 311 201 5 6 313 37 340 7.51e-46 160
Msa0151650 MtrunA17_Chr5g0428881 29.586 338 228 5 11 339 46 382 9.47e-45 157
Msa0151650 MtrunA17_Chr5g0413931 31.746 315 200 8 2 310 27 332 1.03e-44 156
Msa0151650 MtrunA17_Chr6g0451211 29.338 317 213 5 3 314 34 344 3.25e-41 148
Msa0151650 MtrunA17_Chr6g0451251 31.667 300 196 4 6 303 37 329 1.47e-40 146
Msa0151650 MtrunA17_Chr4g0050931 31.922 307 162 5 4 304 35 300 9.67e-40 142
Msa0151650 MtrunA17_Chr5g0441761 28.617 311 212 4 16 324 49 351 1.31e-39 143
Msa0151650 MtrunA17_Chr5g0404811 33.796 216 134 3 94 305 6 216 1.54e-38 137
Msa0151650 MtrunA17_Chr3g0126091 27.245 323 220 6 4 318 34 349 3.55e-38 139
Msa0151650 MtrunA17_Chr5g0429001 27.027 333 220 4 33 352 3 325 9.17e-38 137
Msa0151650 MtrunA17_Chr6g0451261 29.181 281 190 5 6 283 36 310 5.36e-36 139
Msa0151650 MtrunA17_Chr6g0451191 32.127 221 142 3 95 313 1 215 4.25e-35 128
Msa0151650 MtrunA17_Chr3g0084091 31.200 250 165 3 64 313 13 255 5.70e-33 124
Msa0151650 MtrunA17_Chr1g0211801 30.870 230 149 4 4 230 34 256 3.38e-32 121
Msa0151650 MtrunA17_Chr4g0051001 28.873 284 186 5 5 280 55 330 9.78e-32 122
Msa0151650 MtrunA17_Chr2g0278021 34.545 220 128 4 95 304 1 214 4.84e-31 119
Msa0151650 MtrunA17_Chr1g0182261 42.336 137 77 2 170 304 76 212 4.21e-30 115
Msa0151650 MtrunA17_Chr4g0056081 27.063 303 217 4 4 303 37 338 8.46e-30 117
Msa0151650 MtrunA17_Chr8g0334711 39.429 175 102 3 3 176 32 203 2.87e-28 109
Msa0151650 MtrunA17_Chr5g0399281 27.760 317 218 6 3 314 30 340 1.09e-27 111
Msa0151650 MtrunA17_Chr8g0334721 36.620 142 83 2 193 334 1 135 1.69e-23 95.5
Msa0151650 MtrunA17_Chr5g0404801 47.826 92 48 0 3 94 29 120 3.63e-21 87.8
Msa0151650 MtrunA17_Chr8g0334731 32.667 150 96 3 30 176 40 187 2.24e-14 71.2
Msa0151650 MtrunA17_Chr4g0050911 35.593 118 69 2 66 176 16 133 5.72e-14 68.9
Msa0151650 MtrunA17_Chr2g0278031 42.697 89 51 0 3 91 36 124 2.24e-13 66.2
Msa0151650 MtrunA17_Chr1g0211811 37.079 89 54 1 232 318 1 89 3.04e-13 64.7
Msa0151650 MtrunA17_Chr4g0050921 34.951 103 66 1 181 283 3 104 9.94e-13 64.7
Msa0151650 MtrunA17_Chr6g0451241 40.845 71 40 1 246 314 23 93 3.00e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151650 AT4G08290.1 47.478 337 169 3 1 337 32 360 3.43e-117 345
Msa0151650 AT2G37460.1 45.326 353 170 4 4 344 37 378 8.96e-108 320
Msa0151650 AT2G39510.1 43.626 353 182 4 3 348 29 371 2.37e-105 314
Msa0151650 AT1G44800.1 45.399 326 170 3 1 326 30 347 4.78e-103 308
Msa0151650 AT1G21890.1 45.672 335 166 3 1 328 30 355 1.19e-99 300
Msa0151650 AT4G08300.1 45.122 328 169 6 1 326 30 348 3.67e-99 298
Msa0151650 AT5G07050.1 40.346 347 194 4 3 340 39 381 1.87e-92 282
Msa0151650 AT2G40900.1 42.773 339 178 5 4 337 33 360 3.24e-91 278
Msa0151650 AT1G21890.2 47.387 287 143 2 1 280 30 315 9.54e-87 266
Msa0151650 AT3G56620.1 44.932 296 156 2 4 299 33 321 2.66e-85 263
Msa0151650 AT5G13670.1 38.710 341 192 4 3 337 29 358 2.04e-81 253
Msa0151650 AT2G37450.2 40.964 332 153 5 2 322 29 328 6.38e-80 248
Msa0151650 AT4G08290.2 46.725 229 121 1 1 229 32 259 3.57e-79 244
Msa0151650 AT1G75500.1 37.960 353 195 6 3 336 41 388 6.36e-77 242
Msa0151650 AT1G75500.2 37.960 353 195 6 3 336 41 388 6.36e-77 242
Msa0151650 AT3G18200.2 37.931 319 189 4 3 318 56 368 3.53e-72 229
Msa0151650 AT3G53210.1 36.550 342 199 4 3 339 31 359 1.20e-69 222
Msa0151650 AT2G37450.3 42.697 267 131 3 67 322 1 256 9.97e-68 214
Msa0151650 AT5G64700.1 35.329 334 206 3 5 333 31 359 2.93e-62 203
Msa0151650 AT4G30420.1 36.000 325 199 4 4 325 21 339 2.03e-61 201
Msa0151650 AT4G30420.2 36.000 325 199 4 4 325 31 349 2.22e-61 201
Msa0151650 AT3G30340.1 32.710 321 214 2 4 324 33 351 1.20e-58 194
Msa0151650 AT1G01070.1 35.000 340 205 8 3 338 37 364 2.04e-58 193
Msa0151650 AT1G09380.1 34.653 303 187 4 3 299 29 326 2.39e-55 186
Msa0151650 AT5G45370.2 34.810 316 189 6 3 304 41 353 2.09e-54 183
Msa0151650 AT5G45370.4 34.810 316 189 6 3 304 41 353 2.09e-54 183
Msa0151650 AT2G37450.1 40.833 240 120 3 94 322 61 289 5.98e-54 179
Msa0151650 AT5G45370.1 34.437 302 185 3 3 304 41 329 6.05e-54 181
Msa0151650 AT3G53210.2 34.062 320 183 6 28 339 3 302 1.01e-53 179
Msa0151650 AT4G01440.1 33.121 314 199 5 4 315 32 336 2.51e-52 177
Msa0151650 AT1G11450.3 33.951 324 200 7 3 321 37 351 1.31e-51 175
Msa0151650 AT4G01430.1 32.448 339 210 5 3 325 30 365 2.25e-51 175
Msa0151650 AT1G68170.2 30.769 338 227 4 3 338 34 366 6.88e-51 174
Msa0151650 AT1G68170.1 30.769 338 227 4 3 338 24 356 8.06e-51 173
Msa0151650 AT4G28040.1 32.508 323 199 4 3 320 29 337 9.96e-51 173
Msa0151650 AT4G28040.5 32.508 323 199 4 3 320 29 337 9.96e-51 173
Msa0151650 AT4G28040.3 32.508 323 199 4 3 320 29 337 9.96e-51 173
Msa0151650 AT4G28040.4 32.508 323 199 4 3 320 29 337 9.96e-51 173
Msa0151650 AT4G28040.2 32.508 323 199 4 3 320 29 337 9.96e-51 173
Msa0151650 AT3G45870.1 31.667 360 212 6 3 335 33 385 3.20e-50 172
Msa0151650 AT1G01070.2 34.286 315 191 8 28 338 15 317 3.70e-50 170
Msa0151650 AT1G11460.1 34.416 308 190 6 3 305 37 337 7.12e-50 170
Msa0151650 AT3G28050.1 33.746 323 197 9 6 323 36 346 1.70e-49 170
Msa0151650 AT1G11450.5 33.762 311 192 7 16 321 6 307 7.53e-49 167
Msa0151650 AT3G18200.1 37.190 242 143 4 80 318 3 238 1.18e-48 164
Msa0151650 AT4G19185.1 33.437 323 192 5 3 308 42 358 5.77e-48 167
Msa0151650 AT1G11450.2 33.550 307 190 7 20 321 3 300 2.93e-47 162
Msa0151650 AT1G70260.1 30.435 322 209 5 3 314 33 349 3.76e-47 164
Msa0151650 AT5G40240.1 32.492 317 197 7 6 312 44 353 7.06e-47 163
Msa0151650 AT5G40240.3 32.492 317 197 7 6 312 44 353 7.06e-47 163
Msa0151650 AT5G40240.2 32.492 317 197 7 6 312 58 367 1.01e-46 163
Msa0151650 AT1G43650.1 31.464 321 208 4 3 323 28 336 3.01e-46 160
Msa0151650 AT5G40230.1 33.133 332 195 10 6 322 45 364 2.76e-45 159
Msa0151650 AT3G28080.1 30.488 328 214 5 3 321 35 357 3.45e-45 158
Msa0151650 AT4G01440.3 32.624 282 183 4 4 283 32 308 5.05e-45 157
Msa0151650 AT3G28100.1 29.969 327 213 5 3 325 35 349 8.89e-45 157
Msa0151650 AT3G28130.2 30.380 316 210 4 3 312 34 345 1.81e-44 156
Msa0151650 AT3G28080.5 30.916 262 175 2 65 321 8 268 1.83e-44 154
Msa0151650 AT3G28080.7 30.916 262 175 2 65 321 8 268 1.83e-44 154
Msa0151650 AT3G28080.8 30.916 262 175 2 65 321 8 268 1.83e-44 154
Msa0151650 AT3G28080.6 30.916 262 175 2 65 321 8 268 1.83e-44 154
Msa0151650 AT3G53210.3 36.564 227 142 2 3 229 31 255 3.50e-44 153
Msa0151650 AT3G28130.5 33.333 252 164 2 64 312 9 259 5.24e-44 153
Msa0151650 AT3G28130.1 33.333 252 164 2 64 312 9 259 5.24e-44 153
Msa0151650 AT1G25270.1 32.416 327 209 6 4 325 25 344 6.86e-44 155
Msa0151650 AT3G28070.2 30.153 262 178 2 64 321 7 267 1.90e-43 151
Msa0151650 AT3G28080.2 30.916 262 175 2 65 321 89 349 3.50e-43 153
Msa0151650 AT3G28070.1 29.664 327 217 5 3 321 38 359 6.87e-43 152
Msa0151650 AT5G40210.1 30.164 305 188 6 3 304 34 316 1.97e-41 148
Msa0151650 AT3G45870.8 32.526 289 180 4 3 280 33 317 4.46e-41 147
Msa0151650 AT1G11450.4 33.922 283 174 6 3 280 37 311 9.56e-41 145
Msa0151650 AT4G01430.2 32.862 283 183 4 2 280 29 308 7.06e-40 143
Msa0151650 AT4G15540.1 32.595 316 188 6 6 315 41 337 1.32e-38 140
Msa0151650 AT4G15540.2 32.595 316 188 6 6 315 41 337 1.32e-38 140
Msa0151650 AT4G01450.2 34.333 300 188 3 4 302 32 323 1.81e-37 138
Msa0151650 AT3G30340.2 33.921 227 148 2 4 230 33 257 1.98e-37 136
Msa0151650 AT4G01440.4 34.562 217 135 4 4 218 32 243 2.01e-37 135
Msa0151650 AT1G11450.1 32.584 267 166 7 60 321 2 259 2.04e-37 135
Msa0151650 AT4G19185.2 32.584 267 157 5 59 308 20 280 2.96e-37 136
Msa0151650 AT5G45370.6 33.071 254 153 6 65 304 1 251 3.48e-37 135
Msa0151650 AT5G45370.5 33.071 254 153 6 65 304 1 251 3.48e-37 135
Msa0151650 AT5G64700.2 35.065 231 144 2 5 230 31 260 4.18e-37 134
Msa0151650 AT5G47470.1 30.868 311 185 6 4 302 52 344 6.15e-36 134
Msa0151650 AT5G47470.2 31.169 308 182 6 7 302 83 372 8.82e-36 134
Msa0151650 AT5G47470.3 30.868 311 185 6 4 302 80 372 1.09e-35 134
Msa0151650 AT4G01450.1 32.734 278 178 3 4 280 32 301 1.39e-35 132
Msa0151650 AT4G01450.4 35.648 216 130 3 4 218 32 239 2.51e-34 127
Msa0151650 AT1G60050.1 27.479 353 230 8 3 345 34 370 8.40e-34 128
Msa0151650 AT3G28080.9 28.879 232 159 2 95 321 1 231 3.85e-33 123
Msa0151650 AT3G45870.9 33.054 239 145 4 3 230 33 267 9.05e-33 124
Msa0151650 AT3G28130.3 30.769 221 149 2 95 312 1 220 7.50e-32 120
Msa0151650 AT3G45870.5 31.321 265 151 5 94 331 49 309 1.74e-31 121
Msa0151650 AT3G28070.5 27.706 231 162 2 95 321 1 230 2.45e-31 118
Msa0151650 AT4G01440.5 30.638 235 152 5 83 315 3 228 4.07e-31 119
Msa0151650 AT4G01440.2 30.638 235 152 5 83 315 3 228 4.07e-31 119
Msa0151650 AT3G28070.3 29.787 282 189 4 3 280 38 314 6.09e-31 119
Msa0151650 AT4G01450.3 37.234 188 110 2 2 188 30 210 6.97e-31 117
Msa0151650 AT4G24980.1 28.618 304 142 6 3 303 8 239 8.95e-29 112
Msa0151650 AT5G45370.3 33.184 223 132 6 96 304 74 293 9.47e-29 114
Msa0151650 AT3G28080.3 27.439 328 170 6 3 321 35 303 2.85e-27 109
Msa0151650 AT4G16620.1 26.994 326 226 6 7 325 37 357 5.99e-27 109
Msa0151650 AT3G28080.4 27.099 262 131 3 65 321 8 214 3.24e-26 104
Msa0151650 AT3G28100.3 31.839 223 144 3 3 221 35 253 6.47e-26 105
Msa0151650 AT4G01430.3 29.437 231 145 4 110 325 1 228 7.25e-26 103
Msa0151650 AT3G28130.4 29.778 225 152 2 3 224 34 255 2.64e-25 103
Msa0151650 AT1G43650.2 31.140 228 151 3 3 230 28 249 1.03e-24 101
Msa0151650 AT3G45870.2 29.958 237 135 5 122 331 1 233 3.95e-24 99.4
Msa0151650 AT3G45870.6 32.828 198 118 4 94 280 49 242 6.20e-23 96.7
Msa0151650 AT3G45870.7 32.828 198 118 4 94 280 49 242 6.20e-23 96.7
Msa0151650 AT4G16620.4 27.925 265 180 5 67 325 1 260 1.01e-20 90.5
Msa0151650 AT4G16620.2 27.925 265 180 5 67 325 1 260 1.01e-20 90.5
Msa0151650 AT3G28100.2 32.653 196 124 3 3 194 35 226 5.48e-20 88.6
Msa0151650 AT3G28130.6 31.073 177 116 2 3 176 34 207 3.01e-17 80.1
Msa0151650 AT4G16620.3 29.082 196 134 3 7 201 37 228 3.54e-16 78.2
Msa0151650 AT3G45870.3 33.784 148 83 4 94 230 49 192 1.16e-14 72.4
Msa0151650 AT3G45870.4 33.562 146 82 4 96 230 4 145 1.63e-14 70.9

Find 77 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCACTGACATCAATTT+TGG 0.080824 1_4:-13860868 None:intergenic
GCCACGTGGGTTTGCTTTAT+TGG 0.134936 1_4:+13859734 Msa0151650:CDS
GATCAGTGTTTCACGTTCTT+GGG 0.216569 1_4:+13857856 Msa0151650:CDS
CATCTTTGTTCAGGAAAATT+AGG 0.218286 1_4:+13857673 Msa0151650:intron
AGGCTCTGTGATTAAAACTA+TGG 0.269345 1_4:+13860164 Msa0151650:CDS
TGATCAGTGTTTCACGTTCT+TGG 0.279965 1_4:+13857855 Msa0151650:CDS
CACCCTGAAGCCTGGTCTTT+GGG 0.283408 1_4:+13859800 Msa0151650:CDS
ACACCCTGAAGCCTGGTCTT+TGG 0.306088 1_4:+13859799 Msa0151650:CDS
TTCCTTCTCATTGGTTGTGC+TGG 0.319294 1_4:+13859262 Msa0151650:CDS
ACTGCTTCTCTGTCCTTGTT+TGG 0.326495 1_4:-13860920 None:intergenic
GGTCCTGTTCTTCAAATTGC+TGG 0.335914 1_4:+13859160 Msa0151650:CDS
ATTGGAACGCATGAAAATTA+AGG 0.348093 1_4:+13859063 Msa0151650:CDS
GGAGGAGTGGTAGTTGTTAC+AGG 0.354212 1_4:+13860735 Msa0151650:CDS
GGTGCATTGTTCCTTCTCAT+TGG 0.354685 1_4:+13859253 Msa0151650:CDS
AGGCCCAAAGACCAGGCTTC+AGG 0.363730 1_4:-13859803 None:intergenic
CGCATGAAAATTAAGGAAAT+AGG 0.366459 1_4:+13859070 Msa0151650:CDS
CAGGACTATACCTAGTTGTA+TGG 0.372753 1_4:+13860754 Msa0151650:CDS
TGAAGCCTGGTCTTTGGGCC+TGG 0.375975 1_4:+13859805 Msa0151650:CDS
GTAGTTGTTGTTGTCCTTGT+TGG 0.383588 1_4:-13860833 None:intergenic
ACTGGTTCACACTGGCTCCT+TGG 0.384619 1_4:+13859232 Msa0151650:CDS
AGTGACTCATGCCCTTGTTA+AGG 0.393194 1_4:-13857268 None:intergenic
GTGACTCATGCCCTTGTTAA+GGG 0.399581 1_4:-13857267 None:intergenic
GATCCAGCAATTTGAAGAAC+AGG 0.417399 1_4:-13859163 None:intergenic
TGATGATAATAAACCTCAAT+TGG 0.418992 1_4:+13860884 Msa0151650:CDS
TTTATGTACATCAGCATTGT+TGG 0.425034 1_4:+13860714 Msa0151650:intron
GGCCCAAAGACCAGGCTTCA+GGG 0.430969 1_4:-13859802 None:intergenic
GGATGCCAAGCCAAAGTGAT+TGG 0.443164 1_4:+13859091 Msa0151650:CDS
TCTTGGAGGTGCATTTCTAA+TGG 0.445996 1_4:+13859126 Msa0151650:CDS
AAATATCCGAACTGTCATCT+TGG 0.447695 1_4:-13857697 None:intergenic
GAATGGAATAATACCTTTCA+AGG 0.448107 1_4:-13857352 None:intergenic
TAGTTGTTGTTGTCCTTGTT+GGG 0.448946 1_4:-13860832 None:intergenic
TCTTCAACTATGACCAATTG+AGG 0.473820 1_4:-13860897 None:intergenic
AATATCCGAACTGTCATCTT+GGG 0.484399 1_4:-13857696 None:intergenic
CACCACTGTGCCAATCACTT+TGG 0.489666 1_4:-13859101 None:intergenic
GGCACAGTGGTGAGTCTTGG+AGG 0.489779 1_4:+13859112 Msa0151650:CDS
TTGATTTGCCCCATACAACT+AGG 0.499595 1_4:-13860764 None:intergenic
AGCGCAAACACCCTGAAGCC+TGG 0.514435 1_4:+13859792 Msa0151650:CDS
AGGACTATACCTAGTTGTAT+GGG 0.515060 1_4:+13860755 Msa0151650:CDS
GGCTCTGTGATTAAAACTAT+GGG 0.522764 1_4:+13860165 Msa0151650:CDS
ATCAGTGTTTCACGTTCTTG+GGG 0.527485 1_4:+13857857 Msa0151650:CDS
AACAATGGATGCCCTTAACA+AGG 0.527754 1_4:+13857256 None:intergenic
GTGGCTAGTGACATCTCTGC+TGG 0.530399 1_4:-13859716 None:intergenic
AAGCAAAGAGTCTAGAGTCC+AGG 0.532461 1_4:-13859823 None:intergenic
CTGTGCCAATCACTTTGGCT+TGG 0.533643 1_4:-13859096 None:intergenic
TACAAATGTGATGGAAGGTA+CGG 0.537511 1_4:-13857923 None:intergenic
ATGTACATCAGCATTGTTGG+AGG 0.542794 1_4:+13860717 Msa0151650:intron
ATTGGCACAGTGGTGAGTCT+TGG 0.544984 1_4:+13859109 Msa0151650:CDS
AGAGTCCAGGCCCAAAGACC+AGG 0.549201 1_4:-13859810 None:intergenic
TTAGGCCCAAGATGACAGTT+CGG 0.551486 1_4:+13857691 Msa0151650:CDS
TATGATTATAGTCACAGCCT+TGG 0.555490 1_4:+13860221 Msa0151650:CDS
TATTGCAAGTACAAATGTGA+TGG 0.564116 1_4:-13857932 None:intergenic
CAGAGAAACTCCACCTCGGA+AGG 0.565135 1_4:+13860259 Msa0151650:CDS
GTGACTATAATCATACGTAA+AGG 0.570581 1_4:-13860213 None:intergenic
GTATTATATTATACCTTCCG+AGG 0.573225 1_4:-13860272 None:intergenic
CATCAGCATTGTTGGAGGAG+TGG 0.574664 1_4:+13860722 Msa0151650:intron
TTTCTAATGGCACTTTACAA+AGG 0.590679 1_4:+13859139 Msa0151650:CDS
ACTCTTTGCTTCATTATATG+CGG 0.592629 1_4:+13859835 Msa0151650:CDS
AGCCAGCACAACCAATGAGA+AGG 0.593965 1_4:-13859264 None:intergenic
ATTCATCACAGCAGATGCAA+AGG 0.597838 1_4:-13857899 None:intergenic
TGAGAGGACAATACAAGCCA+AGG 0.601320 1_4:-13860238 None:intergenic
AGCAAAGGGAGCAAGAGCAA+TGG 0.614349 1_4:-13857324 None:intergenic
CGAGGTGGAGTTTCTCTGAG+AGG 0.620845 1_4:-13860254 None:intergenic
GCAAGTACAAATGTGATGGA+AGG 0.620947 1_4:-13857928 None:intergenic
AAGGAGCCAGTGTGAACCAG+TGG 0.625463 1_4:-13859230 None:intergenic
TCATAGTTGAAGACCAAACA+AGG 0.630480 1_4:+13860907 Msa0151650:CDS
TTATATTATACCTTCCGAGG+TGG 0.635528 1_4:-13860269 None:intergenic
ATGATCCCACTGGTTCACAC+TGG 0.636386 1_4:+13859224 Msa0151650:CDS
CAGAGATGTCACTAGCCACG+TGG 0.644091 1_4:+13859720 Msa0151650:CDS
AGCCAAAGTGATTGGCACAG+TGG 0.654154 1_4:+13859099 Msa0151650:CDS
CTCTCAGAGAAACTCCACCT+CGG 0.657780 1_4:+13860255 Msa0151650:CDS
ACAATGGATGCCCTTAACAA+GGG 0.662527 1_4:+13857257 None:intergenic
ACCAATAAAGCAAACCCACG+TGG 0.674234 1_4:-13859735 None:intergenic
GGACTATACCTAGTTGTATG+GGG 0.674921 1_4:+13860756 Msa0151650:CDS
AGGAGCCAGTGTGAACCAGT+GGG 0.676390 1_4:-13859229 None:intergenic
GAAAATGTGAATGATCCCAC+TGG 0.686110 1_4:+13859214 Msa0151650:CDS
AGAGATGTCACTAGCCACGT+GGG 0.711420 1_4:+13859721 Msa0151650:CDS
TGAGAAGGAACAATGCACCA+AGG 0.724203 1_4:-13859249 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATTTAAAAAATATA+GGG - chr1_4:13858934-13858953 None:intergenic 0.0%
!! TTTAAAAATTTAAAAAATAT+AGG - chr1_4:13858935-13858954 None:intergenic 0.0%
!!! TATTTTTTAAATTTTTAAAT+TGG + chr1_4:13858936-13858955 Msa0151650:intron 0.0%
!! TATATTTGACATTAAAAAAA+TGG + chr1_4:13857483-13857502 Msa0151650:intron 10.0%
!! ACATTAATTTACTTAATATA+AGG - chr1_4:13857771-13857790 None:intergenic 10.0%
!!! AAATTATAGATTTTAGTAAA+TGG + chr1_4:13858296-13858315 Msa0151650:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr1_4:13858357-13858376 Msa0151650:intron 10.0%
!!! TTATAAGTAATTTTTTTTGT+AGG + chr1_4:13858416-13858435 Msa0151650:intron 10.0%
!!! TATAAGTAATTTTTTTTGTA+GGG + chr1_4:13858417-13858436 Msa0151650:intron 10.0%
!!! TTTTTTCAAAATTTTCAAAT+TGG + chr1_4:13858907-13858926 Msa0151650:intron 10.0%
!! AAATATTGTAATTTATCTAA+CGG - chr1_4:13859381-13859400 None:intergenic 10.0%
!!! TAAATAAATTTTACTTATGA+TGG + chr1_4:13859410-13859429 Msa0151650:intron 10.0%
!!! TTTCAAATGTTTTTTAAATA+TGG + chr1_4:13859635-13859654 Msa0151650:intron 10.0%
!!! TTCAAATGTTTTTTAAATAT+GGG + chr1_4:13859636-13859655 Msa0151650:intron 10.0%
!! AAAAAATAAAAAATTGAGTT+GGG - chr1_4:13860030-13860049 None:intergenic 10.0%
!! TAAAAAATAAAAAATTGAGT+TGG - chr1_4:13860031-13860050 None:intergenic 10.0%
!!! AATTTTTTATTTTTTAAGCT+AGG + chr1_4:13860035-13860054 Msa0151650:intron 10.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr1_4:13858035-13858054 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr1_4:13858107-13858126 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr1_4:13858191-13858210 None:intergenic 15.0%
!! AGATATAAGTAATAAACATA+TGG - chr1_4:13858226-13858245 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr1_4:13858385-13858404 Msa0151650:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr1_4:13858386-13858405 Msa0151650:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr1_4:13858446-13858465 Msa0151650:intron 15.0%
!! ATATGATATCATTTGAATTA+GGG - chr1_4:13858520-13858539 None:intergenic 15.0%
!! AATATGATATCATTTGAATT+AGG - chr1_4:13858521-13858540 None:intergenic 15.0%
!!! AAAATTTTGAAAAAACTACA+AGG - chr1_4:13858902-13858921 None:intergenic 15.0%
!! ATCTTATATTAATCAACATA+GGG - chr1_4:13859022-13859041 None:intergenic 15.0%
!! TATCTTATATTAATCAACAT+AGG - chr1_4:13859023-13859042 None:intergenic 15.0%
!! CATATTATGAGATAATATCA+TGG - chr1_4:13857547-13857566 None:intergenic 20.0%
!!! TTGTACTTGCAATAATTTTT+AGG + chr1_4:13857941-13857960 Msa0151650:CDS 20.0%
!! TAGGTAAGATATTAATTCAA+AGG + chr1_4:13857960-13857979 Msa0151650:intron 20.0%
!! AGGTAAGATATTAATTCAAA+GGG + chr1_4:13857961-13857980 Msa0151650:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr1_4:13858137-13858156 Msa0151650:intron 20.0%
!!! ATTAGGGTTAAATATGTTTT+TGG - chr1_4:13858504-13858523 None:intergenic 20.0%
!! CAACATTTAATTGATATCAT+TGG + chr1_4:13858697-13858716 Msa0151650:intron 20.0%
!!! TTTATTTTGTTTGAGTAGAT+TGG + chr1_4:13859045-13859064 Msa0151650:intron 20.0%
!! ACATAAACTTATATTGTTGA+AGG - chr1_4:13859450-13859469 None:intergenic 20.0%
!!! TTGTTAAAAGTATAAGTTTG+TGG - chr1_4:13859593-13859612 None:intergenic 20.0%
!! TTGATTAGAAATTGTTTAGT+CGG - chr1_4:13859669-13859688 None:intergenic 20.0%
!! ATTTGTTTAATGTTGTAACT+TGG - chr1_4:13860062-13860081 None:intergenic 20.0%
!!! TTTCTTCTAATGTTTTATTC+AGG + chr1_4:13860107-13860126 Msa0151650:intron 20.0%
!!! TTCTTCTAATGTTTTATTCA+GGG + chr1_4:13860108-13860127 Msa0151650:intron 20.0%
!!! GATCAAAGATTTTCTATATT+AGG - chr1_4:13860418-13860437 None:intergenic 20.0%
! GAGTGCTAAAAAATTCAATT+AGG + chr1_4:13857607-13857626 Msa0151650:intron 25.0%
! AAATTCAATTAGGTTACTTG+TGG + chr1_4:13857617-13857636 Msa0151650:intron 25.0%
! GATGAAGAAATACACAAATA+TGG - chr1_4:13857657-13857676 None:intergenic 25.0%
!! CAAAGGGTTAATTATGTTTT+TGG + chr1_4:13857977-13857996 Msa0151650:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr1_4:13858096-13858115 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr1_4:13858161-13858180 Msa0151650:intron 25.0%
! TATATATATTGTGTCCTTCA+CGG + chr1_4:13858634-13858653 Msa0151650:intron 25.0%
! TCACTTTCAAACTATCAAAT+TGG + chr1_4:13858875-13858894 Msa0151650:intron 25.0%
!! TTTATCTAACGGTTTAAAAC+TGG - chr1_4:13859370-13859389 None:intergenic 25.0%
!!! ATAATATGTGTTGACTTTTG+AGG + chr1_4:13859491-13859510 Msa0151650:intron 25.0%
! TGATTAGAAATTGTTTAGTC+GGG - chr1_4:13859668-13859687 None:intergenic 25.0%
! AACAATTTCTAATCAATTGC+AGG + chr1_4:13859673-13859692 Msa0151650:intron 25.0%
! CAATAATGAAATTGCTCTTT+AGG + chr1_4:13859872-13859891 Msa0151650:intron 25.0%
!!! TTGATAGGTTATTGCTTTTT+AGG - chr1_4:13859974-13859993 None:intergenic 25.0%
! AAGCAATAACCTATCAATAA+TGG + chr1_4:13859977-13859996 Msa0151650:intron 25.0%
!! GCAATTCAATTTTATGTTCA+AGG + chr1_4:13860144-13860163 Msa0151650:CDS 25.0%
! GTTTCTTTAATTCAAGAGAT+CGG + chr1_4:13860543-13860562 Msa0151650:intron 25.0%
! GTACATAAAACAAATCAAAG+TGG - chr1_4:13860703-13860722 None:intergenic 25.0%
! TGATGATAATAAACCTCAAT+TGG + chr1_4:13860884-13860903 Msa0151650:CDS 25.0%
!! CATGAGTCACTATATTTTTG+TGG + chr1_4:13857280-13857299 Msa0151650:CDS 30.0%
CTTTCAAGGAAAAAAGCAAA+GGG - chr1_4:13857341-13857360 None:intergenic 30.0%
GAATGGAATAATACCTTTCA+AGG - chr1_4:13857355-13857374 None:intergenic 30.0%
AGATTTCATGAAGAAGAGAA+TGG - chr1_4:13857372-13857391 None:intergenic 30.0%
GCATGCAAAAATATGTATGT+AGG - chr1_4:13857431-13857450 None:intergenic 30.0%
GTATTTCTTCATCTTTGTTC+AGG + chr1_4:13857664-13857683 Msa0151650:intron 30.0%
CATCTTTGTTCAGGAAAATT+AGG + chr1_4:13857673-13857692 Msa0151650:intron 30.0%
TATTGCAAGTACAAATGTGA+TGG - chr1_4:13857935-13857954 None:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr1_4:13858064-13858083 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr1_4:13858065-13858084 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr1_4:13858188-13858207 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr1_4:13858461-13858480 Msa0151650:intron 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + chr1_4:13858476-13858495 Msa0151650:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + chr1_4:13858477-13858496 Msa0151650:intron 30.0%
AGGACACAATATATATAGCT+AGG - chr1_4:13858631-13858650 None:intergenic 30.0%
ATTGGAACGCATGAAAATTA+AGG + chr1_4:13859063-13859082 Msa0151650:CDS 30.0%
CGCATGAAAATTAAGGAAAT+AGG + chr1_4:13859070-13859089 Msa0151650:CDS 30.0%
TTTCTAATGGCACTTTACAA+AGG + chr1_4:13859139-13859158 Msa0151650:CDS 30.0%
TAAAGTCGATAATGAGGATT+CGG - chr1_4:13859339-13859358 None:intergenic 30.0%
!! AATCCTCATTATCGACTTTA+TGG + chr1_4:13859339-13859358 Msa0151650:intron 30.0%
! CAGTGTTGTAACTATTTTCA+TGG + chr1_4:13859769-13859788 Msa0151650:CDS 30.0%
ACTCTTTGCTTCATTATATG+CGG + chr1_4:13859835-13859854 Msa0151650:CDS 30.0%
TTAAAAGCAGTCACAAAAAC+TGG - chr1_4:13860192-13860211 None:intergenic 30.0%
GTGACTATAATCATACGTAA+AGG - chr1_4:13860216-13860235 None:intergenic 30.0%
GTATTATATTATACCTTCCG+AGG - chr1_4:13860275-13860294 None:intergenic 30.0%
!!! GCATTCAACATTAGTCTTTT+TGG + chr1_4:13860438-13860457 Msa0151650:intron 30.0%
TTTATGTACATCAGCATTGT+TGG + chr1_4:13860714-13860733 Msa0151650:intron 30.0%
! TCATCACTGACATCAATTTT+GGG - chr1_4:13860870-13860889 None:intergenic 30.0%
! ATCATCACTGACATCAATTT+TGG - chr1_4:13860871-13860890 None:intergenic 30.0%
CCTTTCAAGGAAAAAAGCAA+AGG - chr1_4:13857342-13857361 None:intergenic 35.0%
!!! CCTTTGCTTTTTTCCTTGAA+AGG + chr1_4:13857339-13857358 Msa0151650:CDS 35.0%
AGGTCACATGAGTATATGAA+TGG - chr1_4:13857411-13857430 None:intergenic 35.0%
! ATTTTTGCATGCTCTGATGA+AGG + chr1_4:13857439-13857458 Msa0151650:intron 35.0%
! TTTTTGCATGCTCTGATGAA+GGG + chr1_4:13857440-13857459 Msa0151650:intron 35.0%
!! TTTTTAGCACTCAATGTAGC+TGG - chr1_4:13857599-13857618 None:intergenic 35.0%
AATATCCGAACTGTCATCTT+GGG - chr1_4:13857699-13857718 None:intergenic 35.0%
AAATATCCGAACTGTCATCT+TGG - chr1_4:13857700-13857719 None:intergenic 35.0%
! TACAAATGTGATGGAAGGTA+CGG - chr1_4:13857926-13857945 None:intergenic 35.0%
! CAAGTTTAGAACACTATGAC+AGG - chr1_4:13858323-13858342 None:intergenic 35.0%
ATATTGCTGACGAACTTAGT+AGG + chr1_4:13858570-13858589 Msa0151650:intron 35.0%
! TTTCTAGAAGTGACATGACT+TGG - chr1_4:13858833-13858852 None:intergenic 35.0%
!!! GATCATTCACATTTTCAGGT+TGG - chr1_4:13859210-13859229 None:intergenic 35.0%
CACTACTTAATCTGAAGATG+AGG + chr1_4:13859563-13859582 Msa0151650:intron 35.0%
AACGGTAGCTAACTACAATT+CGG - chr1_4:13859911-13859930 None:intergenic 35.0%
ACCTCAAACTCATTGTCAAA+CGG - chr1_4:13859929-13859948 None:intergenic 35.0%
AGGCTCTGTGATTAAAACTA+TGG + chr1_4:13860164-13860183 Msa0151650:CDS 35.0%
GGCTCTGTGATTAAAACTAT+GGG + chr1_4:13860165-13860184 Msa0151650:CDS 35.0%
TATGATTATAGTCACAGCCT+TGG + chr1_4:13860221-13860240 Msa0151650:CDS 35.0%
TTATATTATACCTTCCGAGG+TGG - chr1_4:13860272-13860291 None:intergenic 35.0%
! GAGTGTTAGAAACACACTTT+TGG - chr1_4:13860297-13860316 None:intergenic 35.0%
AGGACTATACCTAGTTGTAT+GGG + chr1_4:13860755-13860774 Msa0151650:CDS 35.0%
!!! TTGTTGGGAGATTTTTTGTG+GGG - chr1_4:13860820-13860839 None:intergenic 35.0%
!!! CTTGTTGGGAGATTTTTTGT+GGG - chr1_4:13860821-13860840 None:intergenic 35.0%
! TAGTTGTTGTTGTCCTTGTT+GGG - chr1_4:13860835-13860854 None:intergenic 35.0%
!! TCAATTTTGGGGACAGTAAT+TGG - chr1_4:13860858-13860877 None:intergenic 35.0%
! CATCACTGACATCAATTTTG+GGG - chr1_4:13860869-13860888 None:intergenic 35.0%
TCTTCAACTATGACCAATTG+AGG - chr1_4:13860900-13860919 None:intergenic 35.0%
TCATAGTTGAAGACCAAACA+AGG + chr1_4:13860907-13860926 Msa0151650:CDS 35.0%
TGATCAGTGTTTCACGTTCT+TGG + chr1_4:13857855-13857874 Msa0151650:CDS 40.0%
GATCAGTGTTTCACGTTCTT+GGG + chr1_4:13857856-13857875 Msa0151650:CDS 40.0%
ATCAGTGTTTCACGTTCTTG+GGG + chr1_4:13857857-13857876 Msa0151650:CDS 40.0%
ATTCATCACAGCAGATGCAA+AGG - chr1_4:13857902-13857921 None:intergenic 40.0%
! GCAAGTACAAATGTGATGGA+AGG - chr1_4:13857931-13857950 None:intergenic 40.0%
!! TTAATTTGCATGCGTGTGAG+TGG - chr1_4:13858737-13858756 None:intergenic 40.0%
! TCTTGGAGGTGCATTTCTAA+TGG + chr1_4:13859126-13859145 Msa0151650:CDS 40.0%
GATCCAGCAATTTGAAGAAC+AGG - chr1_4:13859166-13859185 None:intergenic 40.0%
! GTGGGATCATTCACATTTTC+AGG - chr1_4:13859214-13859233 None:intergenic 40.0%
GAAAATGTGAATGATCCCAC+TGG + chr1_4:13859214-13859233 Msa0151650:CDS 40.0%
CCACCATAAAGTCGATAATG+AGG - chr1_4:13859345-13859364 None:intergenic 40.0%
!! CCTCATTATCGACTTTATGG+TGG + chr1_4:13859342-13859361 Msa0151650:intron 40.0%
ACTACAATTCGGCACTTGAT+AGG - chr1_4:13859900-13859919 None:intergenic 40.0%
ACCGTTTGACAATGAGTTTG+AGG + chr1_4:13859925-13859944 Msa0151650:intron 40.0%
CTCATTGGGCCATTATTGAT+AGG - chr1_4:13859989-13860008 None:intergenic 40.0%
TTGGGTATGCGAGTTTAGAT+GGG - chr1_4:13860012-13860031 None:intergenic 40.0%
ATGTACATCAGCATTGTTGG+AGG + chr1_4:13860717-13860736 Msa0151650:intron 40.0%
CAGGACTATACCTAGTTGTA+TGG + chr1_4:13860754-13860773 Msa0151650:CDS 40.0%
GGACTATACCTAGTTGTATG+GGG + chr1_4:13860756-13860775 Msa0151650:CDS 40.0%
!! TTGATTTGCCCCATACAACT+AGG - chr1_4:13860767-13860786 None:intergenic 40.0%
!!! CCTTGTTGGGAGATTTTTTG+TGG - chr1_4:13860822-13860841 None:intergenic 40.0%
CCACAAAAAATCTCCCAACA+AGG + chr1_4:13860819-13860838 Msa0151650:CDS 40.0%
! GTAGTTGTTGTTGTCCTTGT+TGG - chr1_4:13860836-13860855 None:intergenic 40.0%
GTGACTCATGCCCTTGTTAA+GGG - chr1_4:13857270-13857289 None:intergenic 45.0%
AGTGACTCATGCCCTTGTTA+AGG - chr1_4:13857271-13857290 None:intergenic 45.0%
TTAGGCCCAAGATGACAGTT+CGG + chr1_4:13857691-13857710 Msa0151650:CDS 45.0%
CTTAGAACTACCCATGCTCT+TGG - chr1_4:13858669-13858688 None:intergenic 45.0%
GGTCCTGTTCTTCAAATTGC+TGG + chr1_4:13859160-13859179 Msa0151650:CDS 45.0%
TGAGAAGGAACAATGCACCA+AGG - chr1_4:13859252-13859271 None:intergenic 45.0%
GGTGCATTGTTCCTTCTCAT+TGG + chr1_4:13859253-13859272 Msa0151650:CDS 45.0%
! TTCCTTCTCATTGGTTGTGC+TGG + chr1_4:13859262-13859281 Msa0151650:CDS 45.0%
ACCAATAAAGCAAACCCACG+TGG - chr1_4:13859738-13859757 None:intergenic 45.0%
! AAGCAAAGAGTCTAGAGTCC+AGG - chr1_4:13859826-13859845 None:intergenic 45.0%
! CGAGTTTAGATGGGCTCATT+GGG - chr1_4:13860003-13860022 None:intergenic 45.0%
GTTGGGTATGCGAGTTTAGA+TGG - chr1_4:13860013-13860032 None:intergenic 45.0%
TGAGAGGACAATACAAGCCA+AGG - chr1_4:13860241-13860260 None:intergenic 45.0%
ACTGCTTCTCTGTCCTTGTT+TGG - chr1_4:13860923-13860942 None:intergenic 45.0%
!! TTTGTAATTTATTTATTTAT+AGG + chr1_4:13857824-13857843 Msa0151650:intron 5.0%
!!! TACAAATTTTTAAAAATATA+GGG - chr1_4:13858963-13858982 None:intergenic 5.0%
!!! TTACAAATTTTTAAAAATAT+AGG - chr1_4:13858964-13858983 None:intergenic 5.0%
!!! ATTTTTAAAAATTTGTAAAT+TGG + chr1_4:13858966-13858985 Msa0151650:intron 5.0%
!!! TAATTTTAAATTTATCAAAT+CGG + chr1_4:13858995-13859014 Msa0151650:intron 5.0%
AGCAAAGGGAGCAAGAGCAA+TGG - chr1_4:13857327-13857346 None:intergenic 50.0%
! GATCCCACTTCCAAGAGCAT+GGG + chr1_4:13858656-13858675 Msa0151650:intron 50.0%
CTACCCATGCTCTTGGAAGT+GGG - chr1_4:13858662-13858681 None:intergenic 50.0%
ACTACCCATGCTCTTGGAAG+TGG - chr1_4:13858663-13858682 None:intergenic 50.0%
GGATGCCAAGCCAAAGTGAT+TGG + chr1_4:13859091-13859110 Msa0151650:CDS 50.0%
CTGTGCCAATCACTTTGGCT+TGG - chr1_4:13859099-13859118 None:intergenic 50.0%
AGCCAAAGTGATTGGCACAG+TGG + chr1_4:13859099-13859118 Msa0151650:CDS 50.0%
CACCACTGTGCCAATCACTT+TGG - chr1_4:13859104-13859123 None:intergenic 50.0%
ATTGGCACAGTGGTGAGTCT+TGG + chr1_4:13859109-13859128 Msa0151650:CDS 50.0%
!! ATGATCCCACTGGTTCACAC+TGG + chr1_4:13859224-13859243 Msa0151650:CDS 50.0%
AGCCAGCACAACCAATGAGA+AGG - chr1_4:13859267-13859286 None:intergenic 50.0%
AGAGATGTCACTAGCCACGT+GGG + chr1_4:13859721-13859740 Msa0151650:CDS 50.0%
! GCCACGTGGGTTTGCTTTAT+TGG + chr1_4:13859734-13859753 Msa0151650:CDS 50.0%
! GCGAGTTTAGATGGGCTCAT+TGG - chr1_4:13860004-13860023 None:intergenic 50.0%
CTCTCAGAGAAACTCCACCT+CGG + chr1_4:13860255-13860274 Msa0151650:CDS 50.0%
CATCAGCATTGTTGGAGGAG+TGG + chr1_4:13860722-13860741 Msa0151650:intron 50.0%
GGAGGAGTGGTAGTTGTTAC+AGG + chr1_4:13860735-13860754 Msa0151650:CDS 50.0%
CTTGGAAGTGGGATCCGTGA+AGG - chr1_4:13858651-13858670 None:intergenic 55.0%
GGATCCCACTTCCAAGAGCA+TGG + chr1_4:13858655-13858674 Msa0151650:intron 55.0%
AGGAGCCAGTGTGAACCAGT+GGG - chr1_4:13859232-13859251 None:intergenic 55.0%
AAGGAGCCAGTGTGAACCAG+TGG - chr1_4:13859233-13859252 None:intergenic 55.0%
!! ACTGGTTCACACTGGCTCCT+TGG + chr1_4:13859232-13859251 Msa0151650:CDS 55.0%
GTGGCTAGTGACATCTCTGC+TGG - chr1_4:13859719-13859738 None:intergenic 55.0%
CAGAGATGTCACTAGCCACG+TGG + chr1_4:13859720-13859739 Msa0151650:CDS 55.0%
! ACACCCTGAAGCCTGGTCTT+TGG + chr1_4:13859799-13859818 Msa0151650:CDS 55.0%
! CACCCTGAAGCCTGGTCTTT+GGG + chr1_4:13859800-13859819 Msa0151650:CDS 55.0%
CGAGGTGGAGTTTCTCTGAG+AGG - chr1_4:13860257-13860276 None:intergenic 55.0%
CAGAGAAACTCCACCTCGGA+AGG + chr1_4:13860259-13860278 Msa0151650:CDS 55.0%
GGCACAGTGGTGAGTCTTGG+AGG + chr1_4:13859112-13859131 Msa0151650:CDS 60.0%
AGCGCAAACACCCTGAAGCC+TGG + chr1_4:13859792-13859811 Msa0151650:CDS 60.0%
GGCCCAAAGACCAGGCTTCA+GGG - chr1_4:13859805-13859824 None:intergenic 60.0%
AGGCCCAAAGACCAGGCTTC+AGG - chr1_4:13859806-13859825 None:intergenic 60.0%
! TGAAGCCTGGTCTTTGGGCC+TGG + chr1_4:13859805-13859824 Msa0151650:CDS 60.0%
AGAGTCCAGGCCCAAAGACC+AGG - chr1_4:13859813-13859832 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13857260 13860944 13857260 ID=Msa0151650;Name=Msa0151650
chr1_4 mRNA 13857260 13860944 13857260 ID=Msa0151650-mRNA-1;Parent=Msa0151650;Name=Msa0151650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|352
chr1_4 exon 13857260 13857360 13857260 ID=Msa0151650-mRNA-1:exon:5514;Parent=Msa0151650-mRNA-1
chr1_4 exon 13857686 13857748 13857686 ID=Msa0151650-mRNA-1:exon:5515;Parent=Msa0151650-mRNA-1
chr1_4 exon 13857846 13857962 13857846 ID=Msa0151650-mRNA-1:exon:5516;Parent=Msa0151650-mRNA-1
chr1_4 exon 13859063 13859309 13859063 ID=Msa0151650-mRNA-1:exon:5517;Parent=Msa0151650-mRNA-1
chr1_4 exon 13859695 13859856 13859695 ID=Msa0151650-mRNA-1:exon:5518;Parent=Msa0151650-mRNA-1
chr1_4 exon 13860129 13860280 13860129 ID=Msa0151650-mRNA-1:exon:5519;Parent=Msa0151650-mRNA-1
chr1_4 exon 13860728 13860944 13860728 ID=Msa0151650-mRNA-1:exon:5520;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13857260 13857360 13857260 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13857686 13857748 13857686 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13857846 13857962 13857846 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13859063 13859309 13859063 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13859695 13859856 13859695 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13860129 13860280 13860129 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
chr1_4 CDS 13860728 13860944 13860728 ID=Msa0151650-mRNA-1:cds;Parent=Msa0151650-mRNA-1
Gene Sequence

>Msa0151650

ATGGATGCCCTTAACAAGGGCATGAGTCACTATATTTTTGTGGTGTATCGTAATGTCATTGCAACCATTGCTCTTGCTCCCTTTGCTTTTTTCCTTGAAAGGAAAATTAGGCCCAAGATGACAGTTCGGATATTTTCAGAAATTTTTGCACTAGCTTTTGTCGAGATAATACTTGATCAGTGTTTCACGTTCTTGGGGATGAAGCTAACATCAGCATCCTTTGCATCTGCTGTGATGAATTCCGTACCTTCCATCACATTTGTACTTGCAATAATTTTTAGATTGGAACGCATGAAAATTAAGGAAATAGGATGCCAAGCCAAAGTGATTGGCACAGTGGTGAGTCTTGGAGGTGCATTTCTAATGGCACTTTACAAAGGTCCTGTTCTTCAAATTGCTGGATCTACAGCAGCTACTCAAATGCACCAACCTGAAAATGTGAATGATCCCACTGGTTCACACTGGCTCCTTGGTGCATTGTTCCTTCTCATTGGTTGTGCTGGCTTCTCTGCATTCTACATTTTACAAGCTATAACATTGAGAAAGTATCCAGCAGAGATGTCACTAGCCACGTGGGTTTGCTTTATTGGTGCACTTCAAAGCAGTGTTGTAACTATTTTCATGGAGCGCAAACACCCTGAAGCCTGGTCTTTGGGCCTGGACTCTAGACTCTTTGCTTCATTATATGCGGGAATTGTAACTTCAGCAATTCAATTTTATGTTCAAGGCTCTGTGATTAAAACTATGGGACCAGTTTTTGTGACTGCTTTTAATCCTTTACGTATGATTATAGTCACAGCCTTGGCTTGTATTGTCCTCTCAGAGAAACTCCACCTCGGAAGCATTGTTGGAGGAGTGGTAGTTGTTACAGGACTATACCTAGTTGTATGGGGCAAATCAAAAGAACAAAAAGCAATGATGTCAGATGAGTCCCCACAAAAAATCTCCCAACAAGGACAACAACAACTACCAATTACTGTCCCCAAAATTGATGTCAGTGATGATAATAAACCTCAATTGGTCATAGTTGAAGACCAAACAAGGACAGAGAAGCAGTGA
Protein sequence

>Msa0151650

MDALNKGMSHYIFVVYRNVIATIALAPFAFFLERKIRPKMTVRIFSEIFALAFVEIILDQCFTFLGMKLTSASFASAVMNSVPSITFVLAIIFRLERMKIKEIGCQAKVIGTVVSLGGAFLMALYKGPVLQIAGSTAATQMHQPENVNDPTGSHWLLGALFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFIGALQSSVVTIFMERKHPEAWSLGLDSRLFASLYAGIVTSAIQFYVQGSVIKTMGPVFVTAFNPLRMIIVTALACIVLSEKLHLGSIVGGVVVVTGLYLVVWGKSKEQKAMMSDESPQKISQQGQQQLPITVPKIDVSDDNKPQLVIVEDQTRTEKQ*