Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107270 | XP_013466771.1 | 95.050 | 606 | 23 | 3 | 1 | 605 | 1 | 600 | 0.0 | 1185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107270 | A0A072VGA5 | 95.050 | 606 | 23 | 3 | 1 | 605 | 1 | 600 | 0.0 | 1185 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107240 | Msa0107270 | 0.870349 | 1.560699e-66 | -8.615850e-47 |
| Msa0107270 | Msa0233370 | 0.800908 | 1.155714e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107270 | MtrunA17_Chr1g0163291 | 95.050 | 606 | 23 | 3 | 1 | 605 | 1 | 600 | 0.0 | 1185 |
| Msa0107270 | MtrunA17_Chr8g0351061 | 58.777 | 638 | 215 | 10 | 1 | 605 | 1 | 623 | 0.0 | 698 |
| Msa0107270 | MtrunA17_Chr3g0115381 | 41.772 | 474 | 268 | 6 | 134 | 604 | 288 | 756 | 2.72e-124 | 384 |
| Msa0107270 | MtrunA17_Chr5g0424991 | 35.197 | 483 | 245 | 9 | 67 | 491 | 434 | 906 | 9.76e-84 | 281 |
| Msa0107270 | MtrunA17_Chr5g0425001 | 44.954 | 109 | 58 | 2 | 497 | 604 | 21 | 128 | 3.40e-23 | 95.5 |
| Msa0107270 | MtrunA17_Chr5g0403231 | 34.437 | 151 | 91 | 2 | 391 | 533 | 395 | 545 | 1.09e-18 | 90.1 |
| Msa0107270 | MtrunA17_Chr8g0373901 | 32.778 | 180 | 109 | 4 | 391 | 561 | 398 | 574 | 3.70e-18 | 88.2 |
| Msa0107270 | MtrunA17_Chr5g0399331 | 26.316 | 247 | 160 | 9 | 343 | 575 | 301 | 539 | 2.10e-16 | 82.8 |
| Msa0107270 | MtrunA17_Chr4g0034351 | 31.818 | 154 | 97 | 3 | 391 | 536 | 389 | 542 | 4.37e-16 | 81.6 |
| Msa0107270 | MtrunA17_Chr4g0028651 | 26.768 | 198 | 122 | 6 | 391 | 574 | 465 | 653 | 3.87e-12 | 69.3 |
| Msa0107270 | MtrunA17_Chr3g0133631 | 26.154 | 195 | 121 | 6 | 391 | 570 | 341 | 527 | 8.96e-12 | 67.8 |
| Msa0107270 | MtrunA17_Chr8g0374741 | 29.508 | 183 | 105 | 8 | 401 | 570 | 383 | 554 | 3.93e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0107270 | AT3G11920.1 | 53.460 | 578 | 238 | 9 | 41 | 605 | 71 | 630 | 0.0 | 585 |
| Msa0107270 | AT4G08550.2 | 39.368 | 475 | 279 | 7 | 134 | 605 | 223 | 691 | 1.53e-112 | 352 |
| Msa0107270 | AT4G08550.1 | 42.023 | 257 | 146 | 3 | 351 | 605 | 382 | 637 | 1.47e-61 | 216 |
| Msa0107270 | AT4G08550.1 | 36.364 | 154 | 93 | 3 | 134 | 287 | 223 | 371 | 5.58e-23 | 103 |
| Msa0107270 | AT1G16750.1 | 31.707 | 205 | 125 | 6 | 388 | 582 | 295 | 494 | 5.27e-20 | 94.4 |
| Msa0107270 | AT3G13000.3 | 29.661 | 236 | 131 | 7 | 371 | 588 | 332 | 550 | 1.09e-19 | 93.6 |
| Msa0107270 | AT3G13000.2 | 29.661 | 236 | 131 | 7 | 371 | 588 | 332 | 550 | 1.09e-19 | 93.6 |
| Msa0107270 | AT3G13000.1 | 29.386 | 228 | 142 | 7 | 371 | 588 | 303 | 521 | 1.12e-19 | 93.2 |
| Msa0107270 | AT5G66600.2 | 28.090 | 178 | 118 | 3 | 391 | 561 | 365 | 539 | 1.73e-17 | 86.7 |
| Msa0107270 | AT5G66600.7 | 28.090 | 178 | 118 | 3 | 391 | 561 | 331 | 505 | 1.78e-17 | 86.3 |
| Msa0107270 | AT5G66600.14 | 28.090 | 178 | 118 | 3 | 391 | 561 | 385 | 559 | 1.79e-17 | 86.7 |
| Msa0107270 | AT5G66600.1 | 28.090 | 178 | 118 | 3 | 391 | 561 | 385 | 559 | 1.79e-17 | 86.7 |
| Msa0107270 | AT5G66600.4 | 28.090 | 178 | 118 | 3 | 391 | 561 | 385 | 559 | 1.79e-17 | 86.7 |
| Msa0107270 | AT5G66600.9 | 28.090 | 178 | 118 | 3 | 391 | 561 | 385 | 559 | 1.79e-17 | 86.7 |
| Msa0107270 | AT5G66600.3 | 28.090 | 178 | 118 | 3 | 391 | 561 | 385 | 559 | 1.79e-17 | 86.7 |
| Msa0107270 | AT2G23700.1 | 32.778 | 180 | 106 | 5 | 392 | 561 | 479 | 653 | 1.47e-16 | 84.0 |
| Msa0107270 | AT5G42690.5 | 30.851 | 188 | 114 | 6 | 391 | 570 | 290 | 469 | 1.11e-15 | 80.5 |
| Msa0107270 | AT5G42690.3 | 30.108 | 186 | 118 | 5 | 391 | 570 | 265 | 444 | 1.17e-15 | 80.5 |
| Msa0107270 | AT5G42690.2 | 30.851 | 188 | 114 | 6 | 391 | 570 | 317 | 496 | 1.26e-15 | 80.5 |
| Msa0107270 | AT5G42690.4 | 30.851 | 188 | 114 | 6 | 391 | 570 | 317 | 496 | 1.26e-15 | 80.5 |
| Msa0107270 | AT5G42690.1 | 30.851 | 188 | 114 | 6 | 391 | 570 | 316 | 495 | 1.31e-15 | 80.5 |
| Msa0107270 | AT5G47380.5 | 26.316 | 247 | 158 | 9 | 359 | 591 | 272 | 508 | 1.05e-13 | 74.3 |
| Msa0107270 | AT5G47380.4 | 26.316 | 247 | 158 | 9 | 359 | 591 | 328 | 564 | 1.17e-13 | 74.3 |
| Msa0107270 | AT5G47380.1 | 26.316 | 247 | 158 | 9 | 359 | 591 | 328 | 564 | 1.40e-13 | 74.3 |
| Msa0107270 | AT1G43020.1 | 29.775 | 178 | 115 | 2 | 381 | 551 | 202 | 376 | 2.41e-13 | 72.8 |
| Msa0107270 | AT4G37080.2 | 30.508 | 177 | 111 | 6 | 401 | 570 | 396 | 567 | 2.88e-13 | 73.2 |
| Msa0107270 | AT4G37080.3 | 30.508 | 177 | 111 | 6 | 401 | 570 | 396 | 567 | 2.88e-13 | 73.2 |
| Msa0107270 | AT4G37080.1 | 30.508 | 177 | 111 | 6 | 401 | 570 | 383 | 554 | 3.30e-13 | 73.2 |
| Msa0107270 | AT3G18900.5 | 32.919 | 161 | 94 | 5 | 391 | 541 | 304 | 460 | 6.07e-13 | 72.0 |
| Msa0107270 | AT3G18900.6 | 32.298 | 161 | 95 | 5 | 391 | 541 | 228 | 384 | 6.13e-13 | 71.6 |
| Msa0107270 | AT3G18900.3 | 32.298 | 161 | 95 | 5 | 391 | 541 | 228 | 384 | 6.13e-13 | 71.6 |
| Msa0107270 | AT3G18900.4 | 32.919 | 161 | 94 | 5 | 391 | 541 | 309 | 465 | 6.52e-13 | 72.0 |
| Msa0107270 | AT1G16750.2 | 46.154 | 78 | 37 | 2 | 388 | 462 | 295 | 370 | 4.73e-12 | 68.6 |
| Msa0107270 | AT5G66600.12 | 30.769 | 130 | 83 | 2 | 391 | 513 | 385 | 514 | 9.16e-12 | 68.2 |
| Msa0107270 | AT5G66600.11 | 30.769 | 130 | 83 | 2 | 391 | 513 | 385 | 514 | 9.16e-12 | 68.2 |
| Msa0107270 | AT5G66600.6 | 30.769 | 130 | 83 | 2 | 391 | 513 | 385 | 514 | 9.16e-12 | 68.2 |
| Msa0107270 | AT5G66600.13 | 30.769 | 130 | 83 | 2 | 391 | 513 | 385 | 514 | 9.16e-12 | 68.2 |
| Msa0107270 | AT1G76620.1 | 28.571 | 182 | 114 | 6 | 391 | 561 | 293 | 469 | 1.35e-11 | 67.8 |
Find 103 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTACCACTTCAAAAT+TGG | 0.141892 | 1_3:-17329635 | None:intergenic |
| TCTCAAAATGTTTCAATTTC+CGG | 0.172190 | 1_3:+17327225 | Msa0107270:CDS |
| TGCAGGTACAGTGTTGATTT+TGG | 0.235808 | 1_3:+17329748 | Msa0107270:intron |
| ATGAAAGAAATGTGGTAAAA+TGG | 0.248386 | 1_3:+17329773 | Msa0107270:CDS |
| CTCAAAATGTTTCAATTTCC+GGG | 0.252022 | 1_3:+17327226 | Msa0107270:CDS |
| ATTCCGGTGGCACCGGAATA+TGG | 0.274011 | 1_3:+17324961 | Msa0107270:CDS |
| GTAATAGTGGCAAGAGAATA+AGG | 0.303287 | 1_3:-17328446 | None:intergenic |
| TTGATGGAATTGTTTCGTTT+GGG | 0.309224 | 1_3:-17324447 | None:intergenic |
| AATAAATTCTTGAATATTGC+AGG | 0.312907 | 1_3:+17329894 | Msa0107270:exon |
| TCAGCAAAAGTGAAGAATTT+AGG | 0.316081 | 1_3:+17327372 | Msa0107270:CDS |
| TCTGATTTCCAGTATTTGAT+TGG | 0.336556 | 1_3:+17328416 | Msa0107270:CDS |
| AACGACAAGCTGTCGTCGTT+GGG | 0.351556 | 1_3:+17324646 | Msa0107270:CDS |
| GTTGATGGAATTGTTTCGTT+TGG | 0.357232 | 1_3:-17324448 | None:intergenic |
| GAAGAACGAAGGCGGTGAAT+TGG | 0.358394 | 1_3:+17324894 | Msa0107270:CDS |
| AAGGGCTTGACTAAGGAATA+AGG | 0.386116 | 1_3:-17328500 | None:intergenic |
| ATGAATCCTTTGATTCACTT+TGG | 0.386588 | 1_3:+17329467 | Msa0107270:CDS |
| AGTCTTATGCTTCTGAAGAT+AGG | 0.396481 | 1_3:+17327327 | Msa0107270:CDS |
| AAACTGATCGAAATTGCTAA+TGG | 0.404200 | 1_3:+17324922 | Msa0107270:CDS |
| AGATAAACGGTTCATGTTCA+AGG | 0.408067 | 1_3:-17327205 | None:intergenic |
| AACGACGACAGCTTGTCGTT+GGG | 0.408096 | 1_3:-17324643 | None:intergenic |
| GAGGATACCATTTGTAATAG+TGG | 0.409546 | 1_3:-17328459 | None:intergenic |
| TTCTTCAACGACAAGCTAAT+CGG | 0.410642 | 1_3:+17324844 | Msa0107270:CDS |
| CTTCTGTCATTTGTGCCAAA+GGG | 0.416061 | 1_3:-17328518 | None:intergenic |
| ATTCACTTTGGACTTTGTAA+TGG | 0.433942 | 1_3:+17329479 | Msa0107270:CDS |
| CAAGCTAATCGGTGGATTAG+TGG | 0.434140 | 1_3:+17324855 | Msa0107270:CDS |
| TGCAACTAGAGAGTTCTTAG+AGG | 0.440255 | 1_3:+17329565 | Msa0107270:CDS |
| ACAGATCATTACTGCGTTGT+CGG | 0.441603 | 1_3:-17324486 | None:intergenic |
| GTGCAGCTGCAGTCTGTGAT+AGG | 0.443467 | 1_3:+17327276 | Msa0107270:CDS |
| GTCAAGAAGGTGTAATCAAT+AGG | 0.445472 | 1_3:+17328384 | Msa0107270:CDS |
| TCAAAATTGGAGTGAGATGA+AGG | 0.447979 | 1_3:-17329622 | None:intergenic |
| GTGACTGAGTTCAATCTCTC+TGG | 0.448474 | 1_3:+17324592 | Msa0107270:CDS |
| TTCTTGTATGAGATATGAAC+AGG | 0.451107 | 1_3:-17329859 | None:intergenic |
| AAAGAGCTGAAACAAAGAAC+TGG | 0.457091 | 1_3:+17324793 | Msa0107270:CDS |
| TATTCCTTAGTCAAGCCCTT+TGG | 0.459648 | 1_3:+17328503 | Msa0107270:CDS |
| CCTTCTGTCATTTGTGCCAA+AGG | 0.460113 | 1_3:-17328519 | None:intergenic |
| AGAAGCATAAGACTCAAGTA+TGG | 0.463463 | 1_3:-17327318 | None:intergenic |
| TCTCTTGCCACTATTACAAA+TGG | 0.468074 | 1_3:+17328452 | Msa0107270:CDS |
| TTGACACATCTCTTAGCTGA+TGG | 0.468309 | 1_3:+17329832 | Msa0107270:CDS |
| GATTTCCAGTATTTGATTGG+AGG | 0.471100 | 1_3:+17328419 | Msa0107270:CDS |
| TGTGCCAAAGGGCTTGACTA+AGG | 0.473650 | 1_3:-17328507 | None:intergenic |
| GATGTCCTCCAATCAAATAC+TGG | 0.481014 | 1_3:-17328424 | None:intergenic |
| AATGCTTAGGCTGTTGAGGT+TGG | 0.495478 | 1_3:+17327019 | Msa0107270:intron |
| ATCTCATCAAATCCATATTC+CGG | 0.496557 | 1_3:-17324973 | None:intergenic |
| CGGTGATATTCCGGTGGCAC+CGG | 0.496582 | 1_3:+17324954 | Msa0107270:CDS |
| TTGTCGTTGAAGAAAATCAT+TGG | 0.501140 | 1_3:-17324835 | None:intergenic |
| TTCATCAACCGATCTTGAAT+CGG | 0.507177 | 1_3:-17325057 | None:intergenic |
| GTGATCTTCGATTGCTTCTG+AGG | 0.509976 | 1_3:-17328478 | None:intergenic |
| TCTCATACAAGAATTATGAT+TGG | 0.514584 | 1_3:+17329869 | Msa0107270:CDS |
| TACTTGGATGCAAATAAAGC+TGG | 0.516390 | 1_3:+17329805 | Msa0107270:CDS |
| AGAGAGTTCTTAGAGGATGA+TGG | 0.517425 | 1_3:+17329572 | Msa0107270:CDS |
| CACAAATGACAGAAGGATAG+AGG | 0.520547 | 1_3:+17328526 | Msa0107270:CDS |
| TGATGGAATTGTTTCGTTTG+GGG | 0.521585 | 1_3:-17324446 | None:intergenic |
| TGAGATGGTGGAAGTGGAGA+AGG | 0.522628 | 1_3:+17324990 | Msa0107270:CDS |
| AACAAATGCTTAGGCTGTTG+AGG | 0.523405 | 1_3:+17327015 | Msa0107270:intron |
| AACTCTTCAGCAACTCTACA+AGG | 0.523810 | 1_3:-17329536 | None:intergenic |
| CAAAGTCCAAAGTGAATCAA+AGG | 0.526806 | 1_3:-17329473 | None:intergenic |
| CAACGACAAGCTGTCGTCGT+TGG | 0.527022 | 1_3:+17324645 | Msa0107270:CDS |
| CAGCTTCTTGTGAGAAACCA+TGG | 0.530025 | 1_3:+17325123 | Msa0107270:CDS |
| TTCTTGAATATTGCAGGACT+AGG | 0.531727 | 1_3:+17329900 | Msa0107270:exon |
| ATGGAATTGTTTCGTTTGGG+GGG | 0.533395 | 1_3:-17324444 | None:intergenic |
| GGGGTGTGAATTTGAAACAG+GGG | 0.536925 | 1_3:-17324425 | None:intergenic |
| GGGTGTGAATTTGAAACAGG+GGG | 0.537249 | 1_3:-17324424 | None:intergenic |
| TAGGAGACATGTTGATTATG+TGG | 0.538664 | 1_3:+17327346 | Msa0107270:CDS |
| CAACGACGACAGCTTGTCGT+TGG | 0.539513 | 1_3:-17324644 | None:intergenic |
| AATCCATATTCCGGTGCCAC+CGG | 0.546751 | 1_3:-17324964 | None:intergenic |
| GAAGGAGGATGAGATAGTGA+AGG | 0.549168 | 1_3:+17325008 | Msa0107270:CDS |
| ATTTGATGAGATGGTGGAAG+TGG | 0.549620 | 1_3:+17324984 | Msa0107270:CDS |
| CTTAAACTTGTACAATGCCA+TGG | 0.555357 | 1_3:+17328334 | Msa0107270:CDS |
| ACACATCTCTTAGCTGATGG+TGG | 0.563336 | 1_3:+17329835 | Msa0107270:CDS |
| ATCCTACTCTTATCATAGCA+TGG | 0.563711 | 1_3:-17328361 | None:intergenic |
| GATGAAGGGTCCTCTTCTCT+AGG | 0.574774 | 1_3:-17329607 | None:intergenic |
| AGAGATTACCGATTCAAGAT+CGG | 0.575152 | 1_3:+17325049 | Msa0107270:CDS |
| TTCAACGACAAGCTAATCGG+TGG | 0.578385 | 1_3:+17324847 | Msa0107270:CDS |
| TTTCTTACCCGAAAACAGGA+TGG | 0.586581 | 1_3:-17327069 | None:intergenic |
| GATGGAATTGTTTCGTTTGG+GGG | 0.586815 | 1_3:-17324445 | None:intergenic |
| CAAATACTGGAAATCAGAGA+AGG | 0.589193 | 1_3:-17328411 | None:intergenic |
| CACTATCATTTGTAGCACCC+CGG | 0.589714 | 1_3:-17327244 | None:intergenic |
| AAAATGGATAATGAATTACT+TGG | 0.594459 | 1_3:+17329789 | Msa0107270:CDS |
| GATGGTGGAAGTGGAGAAGG+AGG | 0.597667 | 1_3:+17324993 | Msa0107270:CDS |
| CGGTGCCACCGGAATATCAC+CGG | 0.598710 | 1_3:-17324953 | None:intergenic |
| ATATGGATTTGATGAGATGG+TGG | 0.599495 | 1_3:+17324978 | Msa0107270:CDS |
| CCATGGTTATGTTCATCACA+AGG | 0.606680 | 1_3:+17325140 | Msa0107270:CDS |
| ACGACGACAGCTTGTCGTTG+GGG | 0.611023 | 1_3:-17324642 | None:intergenic |
| GCAAAAGTGAAGAATTTAGG+AGG | 0.612288 | 1_3:+17327375 | Msa0107270:CDS |
| CATGACGCAGGATCTGCAGC+GGG | 0.615533 | 1_3:+17328268 | Msa0107270:CDS |
| TCAAAATGTTTCAATTTCCG+GGG | 0.620972 | 1_3:+17327227 | Msa0107270:CDS |
| ATAAGAGTAGGATGTCAAGA+AGG | 0.626225 | 1_3:+17328371 | Msa0107270:CDS |
| ACGACAAGCTGTCGTCGTTG+GGG | 0.626434 | 1_3:+17324647 | Msa0107270:CDS |
| ATCCATGCTATGATAAGAGT+AGG | 0.628623 | 1_3:+17328359 | Msa0107270:CDS |
| TTGAAGTTGACCTAGAGAAG+AGG | 0.632403 | 1_3:+17329597 | Msa0107270:CDS |
| CAAAATTGGAGTGAGATGAA+GGG | 0.633095 | 1_3:-17329621 | None:intergenic |
| CCTTGTGATGAACATAACCA+TGG | 0.635178 | 1_3:-17325140 | None:intergenic |
| GGAATATGGATTTGATGAGA+TGG | 0.636144 | 1_3:+17324975 | Msa0107270:CDS |
| CCTTTGGCACAAATGACAGA+AGG | 0.636165 | 1_3:+17328519 | Msa0107270:CDS |
| TAGTGGAATTAAACGCGATG+AGG | 0.643929 | 1_3:+17324872 | Msa0107270:CDS |
| TATCATAGCATGGATGACCA+TGG | 0.646877 | 1_3:-17328351 | None:intergenic |
| CTAAATCAAGCCCAAAAGTG+AGG | 0.651929 | 1_3:+17329504 | Msa0107270:CDS |
| TCTACCGAAAACAACATCAA+CGG | 0.657551 | 1_3:+17324334 | Msa0107270:CDS |
| CAGGTATGTAAACATGACGC+AGG | 0.659327 | 1_3:+17328256 | Msa0107270:intron |
| ACATGACGCAGGATCTGCAG+CGG | 0.677376 | 1_3:+17328267 | Msa0107270:CDS |
| TGATGAAGATGAAGATTGTG+AGG | 0.685572 | 1_3:+17325073 | Msa0107270:CDS |
| GCGATGAGGAAGAACGAAGG+CGG | 0.720965 | 1_3:+17324886 | Msa0107270:CDS |
| AACGCGATGAGGAAGAACGA+AGG | 0.733578 | 1_3:+17324883 | Msa0107270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTCTATAAAAAATTAT+AGG | + | chr1_3:17325460-17325479 | Msa0107270:intron | 10.0% |
| !!! | AACTATTTTTTAATAATCTT+AGG | + | chr1_3:17325549-17325568 | Msa0107270:intron | 10.0% |
| !! | TATTCAAATTGAATAAATAT+AGG | - | chr1_3:17326540-17326559 | None:intergenic | 10.0% |
| !!! | TACATTTTTAAAAAGTAAAA+GGG | - | chr1_3:17328662-17328681 | None:intergenic | 10.0% |
| !!! | TTACATTTTTAAAAAGTAAA+AGG | - | chr1_3:17328663-17328682 | None:intergenic | 10.0% |
| !!! | TTGTTGTTTTTGTTTTTTTT+TGG | + | chr1_3:17325201-17325220 | Msa0107270:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTACAA+TGG | + | chr1_3:17325235-17325254 | Msa0107270:intron | 15.0% |
| !!! | AAAATAATATTTGACTGTTT+TGG | + | chr1_3:17325331-17325350 | Msa0107270:intron | 15.0% |
| !! | TAAAAGAAATATTTAATGGA+CGG | + | chr1_3:17325405-17325424 | Msa0107270:intron | 15.0% |
| !!! | TTTTTTTTCAAGAAAAGAAA+AGG | - | chr1_3:17325763-17325782 | None:intergenic | 15.0% |
| !!! | CTTTTCTTGAAAAAAAAAAT+TGG | + | chr1_3:17325766-17325785 | Msa0107270:intron | 15.0% |
| !!! | AATATGTTACATTTTTTATG+TGG | + | chr1_3:17326075-17326094 | Msa0107270:intron | 15.0% |
| !! | CTATTACTTAAAAAACATAT+TGG | - | chr1_3:17327121-17327140 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTAAAAAGAATAG+AGG | - | chr1_3:17328045-17328064 | None:intergenic | 15.0% |
| !!! | TGTGTTTCAATATTAAATTT+TGG | + | chr1_3:17328557-17328576 | Msa0107270:intron | 15.0% |
| !!! | AATGTAATAATTTTTTTCCT+TGG | + | chr1_3:17328676-17328695 | Msa0107270:intron | 15.0% |
| !! | ATATAATGAAAAAACATGTT+TGG | + | chr1_3:17328797-17328816 | Msa0107270:intron | 15.0% |
| !!! | AACACTAGTTTAATTTTATT+TGG | - | chr1_3:17328970-17328989 | None:intergenic | 15.0% |
| !! | TAGTAATTTATATTATTTGC+AGG | + | chr1_3:17329731-17329750 | Msa0107270:intron | 15.0% |
| !!! | TGAAAGTGTTTTTTTTGTAA+CGG | - | chr1_3:17324368-17324387 | None:intergenic | 20.0% |
| !!! | TTTTAGTTGACATTTTGATT+TGG | + | chr1_3:17325281-17325300 | Msa0107270:intron | 20.0% |
| !! | ATAGTAATGAAAAAGTTCAA+AGG | + | chr1_3:17325354-17325373 | Msa0107270:intron | 20.0% |
| !! | TCAATCAAACATATATCAAT+TGG | - | chr1_3:17325628-17325647 | None:intergenic | 20.0% |
| !!! | AAAAGAAAAGGCTAAAATTT+TGG | - | chr1_3:17325751-17325770 | None:intergenic | 20.0% |
| !!! | ATAAATGTTTTCCATTTTCA+AGG | - | chr1_3:17325831-17325850 | None:intergenic | 20.0% |
| !! | GTTAAAAATTCAATGCAAAT+TGG | - | chr1_3:17325949-17325968 | None:intergenic | 20.0% |
| !!! | AGTGAAATTTGCTTATATTT+AGG | - | chr1_3:17325989-17326008 | None:intergenic | 20.0% |
| !!! | ATAAGCAAATTTCACTTTTT+AGG | + | chr1_3:17325993-17326012 | Msa0107270:intron | 20.0% |
| !!! | TTTTGACTACATAAATAATG+TGG | + | chr1_3:17326183-17326202 | Msa0107270:intron | 20.0% |
| !!! | AAATTCAAGATTCACTTTTT+AGG | + | chr1_3:17326208-17326227 | Msa0107270:intron | 20.0% |
| !! | TACAAGAAGAAAATTAATCA+AGG | - | chr1_3:17327145-17327164 | None:intergenic | 20.0% |
| !!! | TTGATTAATTTTCTTCTTGT+AGG | + | chr1_3:17327144-17327163 | Msa0107270:intron | 20.0% |
| !!! | TGATTAATTTTCTTCTTGTA+GGG | + | chr1_3:17327145-17327164 | Msa0107270:intron | 20.0% |
| !!! | TTGAAACATTTTGAGATAAA+CGG | - | chr1_3:17327221-17327240 | None:intergenic | 20.0% |
| !! | AAAAAATATAAGTTGCAAAC+TGG | - | chr1_3:17327924-17327943 | None:intergenic | 20.0% |
| !! | TTATATAATACATGTCGAAA+GGG | - | chr1_3:17328130-17328149 | None:intergenic | 20.0% |
| !! | ATTATATAATACATGTCGAA+AGG | - | chr1_3:17328131-17328150 | None:intergenic | 20.0% |
| !! | TAACTAAAATTCTAGATTCT+AGG | - | chr1_3:17328706-17328725 | None:intergenic | 20.0% |
| !!! | TTTTTTGGTAATCAAGTTAT+TGG | - | chr1_3:17328899-17328918 | None:intergenic | 20.0% |
| !! | TGAATATACGAAAAACAAAA+GGG | - | chr1_3:17329274-17329293 | None:intergenic | 20.0% |
| !! | ATGAATATACGAAAAACAAA+AGG | - | chr1_3:17329275-17329294 | None:intergenic | 20.0% |
| !! | AAAATGGATAATGAATTACT+TGG | + | chr1_3:17329789-17329808 | Msa0107270:CDS | 20.0% |
| !! | AATAAATTCTTGAATATTGC+AGG | + | chr1_3:17329894-17329913 | Msa0107270:exon | 20.0% |
| !!! | TTTGAGTTGTTTTTGTTGTT+GGG | - | chr1_3:17324306-17324325 | None:intergenic | 25.0% |
| !!! | TTTTGAGTTGTTTTTGTTGT+TGG | - | chr1_3:17324307-17324326 | None:intergenic | 25.0% |
| !!! | GAAAGTGTTTTTTTTGTAAC+GGG | - | chr1_3:17324367-17324386 | None:intergenic | 25.0% |
| !! | ATTGCTAATGGAAAATTTTC+CGG | + | chr1_3:17324934-17324953 | Msa0107270:CDS | 25.0% |
| !! | TTTTTGCTAATGTGTAAAGT+AGG | - | chr1_3:17325432-17325451 | None:intergenic | 25.0% |
| ! | AAAGAAAATTTGATTGAGTG+AGG | + | chr1_3:17325655-17325674 | Msa0107270:intron | 25.0% |
| ! | ACATGTTAAGATACATGTTA+AGG | - | chr1_3:17325725-17325744 | None:intergenic | 25.0% |
| !! | AATTTGCTTATATTTAGGAC+CGG | - | chr1_3:17325984-17326003 | None:intergenic | 25.0% |
| ! | TGTAACATATTATGAAGATG+AGG | + | chr1_3:17326264-17326283 | Msa0107270:intron | 25.0% |
| ! | AAATCACAAAAACTTTGCAT+TGG | + | chr1_3:17326676-17326695 | Msa0107270:intron | 25.0% |
| !!! | AATGTTTTTAAGTGTGTGAT+TGG | - | chr1_3:17326742-17326761 | None:intergenic | 25.0% |
| ! | TTGTCACATTCATTATTTGA+CGG | + | chr1_3:17326814-17326833 | Msa0107270:intron | 25.0% |
| ! | TCGTTAGAGAAACATAATTT+AGG | - | chr1_3:17326964-17326983 | None:intergenic | 25.0% |
| ! | TCTCAAAATGTTTCAATTTC+CGG | + | chr1_3:17327225-17327244 | Msa0107270:CDS | 25.0% |
| ! | GTAAATCTTATTGTCTATCA+CGG | + | chr1_3:17327405-17327424 | Msa0107270:intron | 25.0% |
| ! | CAAGTTAGAACTAACATATA+AGG | - | chr1_3:17327598-17327617 | None:intergenic | 25.0% |
| ! | TAATTGCATGAAGCTAAATT+TGG | - | chr1_3:17327817-17327836 | None:intergenic | 25.0% |
| !! | ATTTCATTCAAGTTTAGCTT+AGG | - | chr1_3:17328175-17328194 | None:intergenic | 25.0% |
| !!! | ATTTTGTTACTTCTGATATG+AGG | + | chr1_3:17328199-17328218 | Msa0107270:intron | 25.0% |
| !!! | AAAGTGATTTTTCAAAATGC+AGG | + | chr1_3:17328237-17328256 | Msa0107270:intron | 25.0% |
| ! | AATCTTTCTCAAAATCCTTA+GGG | - | chr1_3:17328608-17328627 | None:intergenic | 25.0% |
| !!! | GTAATAATTTTTTTCCTTGG+TGG | + | chr1_3:17328679-17328698 | Msa0107270:intron | 25.0% |
| ! | AATGAAAAAACATGTTTGGA+AGG | + | chr1_3:17328801-17328820 | Msa0107270:intron | 25.0% |
| ! | ATGAAAAAACATGTTTGGAA+GGG | + | chr1_3:17328802-17328821 | Msa0107270:intron | 25.0% |
| ! | TAACTTGATTACCAAAAAAC+AGG | + | chr1_3:17328900-17328919 | Msa0107270:intron | 25.0% |
| !! | GTGAGTCAACTAAAATTTTA+GGG | - | chr1_3:17328927-17328946 | None:intergenic | 25.0% |
| ! | GGTCAATTATAGTAATTCAA+GGG | - | chr1_3:17328949-17328968 | None:intergenic | 25.0% |
| ! | TGGTCAATTATAGTAATTCA+AGG | - | chr1_3:17328950-17328969 | None:intergenic | 25.0% |
| ! | GTATATTCATTCTATTGAAC+CGG | + | chr1_3:17329285-17329304 | Msa0107270:intron | 25.0% |
| ! | AAATAGTTATCGCACTTTAT+GGG | - | chr1_3:17329356-17329375 | None:intergenic | 25.0% |
| !! | ACATTCTGCTATTGATAATA+TGG | + | chr1_3:17329387-17329406 | Msa0107270:intron | 25.0% |
| ! | CTTAATTACCACTTCAAAAT+TGG | - | chr1_3:17329638-17329657 | None:intergenic | 25.0% |
| !!! | TTTTGGAAATGAAAGAAATG+TGG | + | chr1_3:17329765-17329784 | Msa0107270:CDS | 25.0% |
| ! | ATGAAAGAAATGTGGTAAAA+TGG | + | chr1_3:17329773-17329792 | Msa0107270:CDS | 25.0% |
| ! | TCTCATACAAGAATTATGAT+TGG | + | chr1_3:17329869-17329888 | Msa0107270:CDS | 25.0% |
| !!! | TTGTTTTTGTTGTTGGGTTT+GGG | - | chr1_3:17324300-17324319 | None:intergenic | 30.0% |
| TTGATGGAATTGTTTCGTTT+GGG | - | chr1_3:17324450-17324469 | None:intergenic | 30.0% | |
| !!! | AAGAAAGTTTTGAGTGTTGA+TGG | - | chr1_3:17324466-17324485 | None:intergenic | 30.0% |
| !!! | TGAATGTTTTAACGATGTGA+TGG | - | chr1_3:17324530-17324549 | None:intergenic | 30.0% |
| TTGTCGTTGAAGAAAATCAT+TGG | - | chr1_3:17324838-17324857 | None:intergenic | 30.0% | |
| AAACTGATCGAAATTGCTAA+TGG | + | chr1_3:17324922-17324941 | Msa0107270:CDS | 30.0% | |
| ! | AAAATTTTCCGGTGATATTC+CGG | + | chr1_3:17324945-17324964 | Msa0107270:CDS | 30.0% |
| ATCTCATCAAATCCATATTC+CGG | - | chr1_3:17324976-17324995 | None:intergenic | 30.0% | |
| !!! | ATTGTGAGGAATTGTTTTGA+TGG | + | chr1_3:17325087-17325106 | Msa0107270:CDS | 30.0% |
| !!! | TTGTTTTGATGGAAGTGAAT+TGG | + | chr1_3:17325098-17325117 | Msa0107270:CDS | 30.0% |
| ATCTCCATCAAAAAATTGTG+AGG | - | chr1_3:17325698-17325717 | None:intergenic | 30.0% | |
| AACATATTATGAAGATGAGG+TGG | + | chr1_3:17326267-17326286 | Msa0107270:intron | 30.0% | |
| ! | AAACTTTGCATTGGTAATCT+CGG | + | chr1_3:17326685-17326704 | Msa0107270:intron | 30.0% |
| GTCACAGAATTTAATGTGTT+CGG | + | chr1_3:17326780-17326799 | Msa0107270:intron | 30.0% | |
| TGTCACATTCATTATTTGAC+GGG | + | chr1_3:17326815-17326834 | Msa0107270:intron | 30.0% | |
| TCATTCCAAAACAAATGCTT+AGG | + | chr1_3:17327006-17327025 | Msa0107270:intron | 30.0% | |
| ! | TTATTTTCTTACCCGAAAAC+AGG | - | chr1_3:17327076-17327095 | None:intergenic | 30.0% |
| ! | AACATATTGGTAGCTTTCTT+TGG | - | chr1_3:17327108-17327127 | None:intergenic | 30.0% |
| ! | TTTTCTTCTTGTAGGGAAAA+TGG | + | chr1_3:17327152-17327171 | Msa0107270:intron | 30.0% |
| CTCAAAATGTTTCAATTTCC+GGG | + | chr1_3:17327226-17327245 | Msa0107270:CDS | 30.0% | |
| TCAAAATGTTTCAATTTCCG+GGG | + | chr1_3:17327227-17327246 | Msa0107270:CDS | 30.0% | |
| !! | AAATTCTTCACTTTTGCTGA+TGG | - | chr1_3:17327372-17327391 | None:intergenic | 30.0% |
| TCAGCAAAAGTGAAGAATTT+AGG | + | chr1_3:17327372-17327391 | Msa0107270:CDS | 30.0% | |
| TTTCATTCATCCACATTTCT+CGG | - | chr1_3:17327546-17327565 | None:intergenic | 30.0% | |
| AATGTGGATGAATGAAATGA+AGG | + | chr1_3:17327549-17327568 | Msa0107270:intron | 30.0% | |
| ATGTGGATGAATGAAATGAA+GGG | + | chr1_3:17327550-17327569 | Msa0107270:intron | 30.0% | |
| AAAGAAATGCAGAGAATAAC+AGG | + | chr1_3:17327668-17327687 | Msa0107270:intron | 30.0% | |
| AAGAAAATACCTGAATTTGC+CGG | + | chr1_3:17328057-17328076 | Msa0107270:intron | 30.0% | |
| AGGTTTCAAAAGTAGGTTAT+AGG | - | chr1_3:17328106-17328125 | None:intergenic | 30.0% | |
| TCTGATTTCCAGTATTTGAT+TGG | + | chr1_3:17328416-17328435 | Msa0107270:CDS | 30.0% | |
| CAATCTTTCTCAAAATCCTT+AGG | - | chr1_3:17328609-17328628 | None:intergenic | 30.0% | |
| !! | TTTTAGTTACCAACGTTACA+TGG | + | chr1_3:17328717-17328736 | Msa0107270:intron | 30.0% |
| AAATCTCAGACCTTACTTAA+GGG | - | chr1_3:17328770-17328789 | None:intergenic | 30.0% | |
| TGAAAAAACATGTTTGGAAG+GGG | + | chr1_3:17328803-17328822 | Msa0107270:intron | 30.0% | |
| !!! | AATTTTAGGGTCCTGTTTTT+TGG | - | chr1_3:17328914-17328933 | None:intergenic | 30.0% |
| ! | GGTGAGTCAACTAAAATTTT+AGG | - | chr1_3:17328928-17328947 | None:intergenic | 30.0% |
| TCAACTCACAGAAAATTTGA+AGG | - | chr1_3:17328996-17329015 | None:intergenic | 30.0% | |
| TTCAAGGGAATGTTATAATC+TGG | + | chr1_3:17329116-17329135 | Msa0107270:intron | 30.0% | |
| GAAATAGTTATCGCACTTTA+TGG | - | chr1_3:17329357-17329376 | None:intergenic | 30.0% | |
| ATGAATCCTTTGATTCACTT+TGG | + | chr1_3:17329467-17329486 | Msa0107270:CDS | 30.0% | |
| ATTCACTTTGGACTTTGTAA+TGG | + | chr1_3:17329479-17329498 | Msa0107270:CDS | 30.0% | |
| !! | GTGAAAAAAACCTCACTTTT+GGG | - | chr1_3:17329517-17329536 | None:intergenic | 30.0% |
| TTCTTGTATGAGATATGAAC+AGG | - | chr1_3:17329862-17329881 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTTGTTGTTGGGTT+TGG | - | chr1_3:17324301-17324320 | None:intergenic | 35.0% |
| TCTACCGAAAACAACATCAA+CGG | + | chr1_3:17324334-17324353 | Msa0107270:CDS | 35.0% | |
| !!! | GTTACCGTTGATGTTGTTTT+CGG | - | chr1_3:17324341-17324360 | None:intergenic | 35.0% |
| TGATGGAATTGTTTCGTTTG+GGG | - | chr1_3:17324449-17324468 | None:intergenic | 35.0% | |
| ! | GTTGATGGAATTGTTTCGTT+TGG | - | chr1_3:17324451-17324470 | None:intergenic | 35.0% |
| AAAGAGCTGAAACAAAGAAC+TGG | + | chr1_3:17324793-17324812 | Msa0107270:CDS | 35.0% | |
| TTCTTCAACGACAAGCTAAT+CGG | + | chr1_3:17324844-17324863 | Msa0107270:CDS | 35.0% | |
| GGAATATGGATTTGATGAGA+TGG | + | chr1_3:17324975-17324994 | Msa0107270:CDS | 35.0% | |
| ATATGGATTTGATGAGATGG+TGG | + | chr1_3:17324978-17324997 | Msa0107270:CDS | 35.0% | |
| !! | AGAGATTACCGATTCAAGAT+CGG | + | chr1_3:17325049-17325068 | Msa0107270:CDS | 35.0% |
| TTCATCAACCGATCTTGAAT+CGG | - | chr1_3:17325060-17325079 | None:intergenic | 35.0% | |
| TGATGAAGATGAAGATTGTG+AGG | + | chr1_3:17325073-17325092 | Msa0107270:CDS | 35.0% | |
| CACATGGCATATGTTACATT+TGG | - | chr1_3:17325588-17325607 | None:intergenic | 35.0% | |
| AATTGGACCAAATCCATTGT+TGG | - | chr1_3:17325611-17325630 | None:intergenic | 35.0% | |
| !!! | TGTGCCTCACAATTTTTTGA+TGG | + | chr1_3:17325691-17325710 | Msa0107270:intron | 35.0% |
| GTCACATTCATTATTTGACG+GGG | + | chr1_3:17326816-17326835 | Msa0107270:intron | 35.0% | |
| ! | AACAGCCTAAGCATTTGTTT+TGG | - | chr1_3:17327014-17327033 | None:intergenic | 35.0% |
| !! | TTGTAGGGAAAATGGTTTTG+AGG | + | chr1_3:17327160-17327179 | Msa0107270:intron | 35.0% |
| AGATAAACGGTTCATGTTCA+AGG | - | chr1_3:17327208-17327227 | None:intergenic | 35.0% | |
| ! | AGAAGCATAAGACTCAAGTA+TGG | - | chr1_3:17327321-17327340 | None:intergenic | 35.0% |
| ! | AGTCTTATGCTTCTGAAGAT+AGG | + | chr1_3:17327327-17327346 | Msa0107270:CDS | 35.0% |
| ! | TAGGAGACATGTTGATTATG+TGG | + | chr1_3:17327346-17327365 | Msa0107270:CDS | 35.0% |
| GCAAAAGTGAAGAATTTAGG+AGG | + | chr1_3:17327375-17327394 | Msa0107270:CDS | 35.0% | |
| AGTGAAGAATTTAGGAGGTA+TGG | + | chr1_3:17327380-17327399 | Msa0107270:intron | 35.0% | |
| TATGGACATTGAATACGAGA+CGG | - | chr1_3:17327501-17327520 | None:intergenic | 35.0% | |
| GCTATGTATAGAACATGTCA+AGG | + | chr1_3:17327630-17327649 | Msa0107270:intron | 35.0% | |
| ! | AGATAGTGACTTGTGTTTCA+AGG | - | chr1_3:17327776-17327795 | None:intergenic | 35.0% |
| TTACACGTTAGTGTCACATA+CGG | + | chr1_3:17327865-17327884 | Msa0107270:intron | 35.0% | |
| CGTGTAGTGAAAACTAAGAT+TGG | - | chr1_3:17327970-17327989 | None:intergenic | 35.0% | |
| !! | TTAGTTTTCACTACACGACT+GGG | + | chr1_3:17327973-17327992 | Msa0107270:intron | 35.0% |
| !! | GGGGAATGAATGTTTGATTT+TGG | + | chr1_3:17327993-17328012 | Msa0107270:intron | 35.0% |
| AAGAACCTTATTGCTGATAC+CGG | - | chr1_3:17328079-17328098 | None:intergenic | 35.0% | |
| AAAGGGAAGGTTTCAAAAGT+AGG | - | chr1_3:17328113-17328132 | None:intergenic | 35.0% | |
| ATAATACATGTCGAAAGGGA+AGG | - | chr1_3:17328126-17328145 | None:intergenic | 35.0% | |
| CTTAAACTTGTACAATGCCA+TGG | + | chr1_3:17328334-17328353 | Msa0107270:CDS | 35.0% | |
| ATCCATGCTATGATAAGAGT+AGG | + | chr1_3:17328359-17328378 | Msa0107270:CDS | 35.0% | |
| ATCCTACTCTTATCATAGCA+TGG | - | chr1_3:17328364-17328383 | None:intergenic | 35.0% | |
| ATAAGAGTAGGATGTCAAGA+AGG | + | chr1_3:17328371-17328390 | Msa0107270:CDS | 35.0% | |
| ! | GTCAAGAAGGTGTAATCAAT+AGG | + | chr1_3:17328384-17328403 | Msa0107270:CDS | 35.0% |
| CAAATACTGGAAATCAGAGA+AGG | - | chr1_3:17328414-17328433 | None:intergenic | 35.0% | |
| GATTTCCAGTATTTGATTGG+AGG | + | chr1_3:17328419-17328438 | Msa0107270:CDS | 35.0% | |
| GTAATAGTGGCAAGAGAATA+AGG | - | chr1_3:17328449-17328468 | None:intergenic | 35.0% | |
| TCTCTTGCCACTATTACAAA+TGG | + | chr1_3:17328452-17328471 | Msa0107270:CDS | 35.0% | |
| GAGGATACCATTTGTAATAG+TGG | - | chr1_3:17328462-17328481 | None:intergenic | 35.0% | |
| ! | ACATTTGTTGCCTTATGAGT+CGG | + | chr1_3:17328582-17328601 | Msa0107270:intron | 35.0% |
| GGACTTAAATCCCTTAAGTA+AGG | + | chr1_3:17328757-17328776 | Msa0107270:intron | 35.0% | |
| CAAATCTCAGACCTTACTTA+AGG | - | chr1_3:17328771-17328790 | None:intergenic | 35.0% | |
| CTAATCTCTGTCAGAAAACA+TGG | - | chr1_3:17328851-17328870 | None:intergenic | 35.0% | |
| AGGGAATGTTATAATCTGGA+CGG | + | chr1_3:17329120-17329139 | Msa0107270:intron | 35.0% | |
| ! | CGATGTTTGGTAACAAAGTT+TGG | - | chr1_3:17329244-17329263 | None:intergenic | 35.0% |
| CAAAGTCCAAAGTGAATCAA+AGG | - | chr1_3:17329476-17329495 | None:intergenic | 35.0% | |
| ! | GGTGAAAAAAACCTCACTTT+TGG | - | chr1_3:17329518-17329537 | None:intergenic | 35.0% |
| CAAAATTGGAGTGAGATGAA+GGG | - | chr1_3:17329624-17329643 | None:intergenic | 35.0% | |
| TCAAAATTGGAGTGAGATGA+AGG | - | chr1_3:17329625-17329644 | None:intergenic | 35.0% | |
| !! | ATCTCACTCCAATTTTGAAG+TGG | + | chr1_3:17329627-17329646 | Msa0107270:CDS | 35.0% |
| TACTTGGATGCAAATAAAGC+TGG | + | chr1_3:17329805-17329824 | Msa0107270:CDS | 35.0% | |
| TTCTTGAATATTGCAGGACT+AGG | + | chr1_3:17329900-17329919 | Msa0107270:exon | 35.0% | |
| ATGGAATTGTTTCGTTTGGG+GGG | - | chr1_3:17324447-17324466 | None:intergenic | 40.0% | |
| GATGGAATTGTTTCGTTTGG+GGG | - | chr1_3:17324448-17324467 | None:intergenic | 40.0% | |
| ACAGATCATTACTGCGTTGT+CGG | - | chr1_3:17324489-17324508 | None:intergenic | 40.0% | |
| ! | TTCAGCTCTTTTTCTCTCTC+TGG | - | chr1_3:17324784-17324803 | None:intergenic | 40.0% |
| TAGTGGAATTAAACGCGATG+AGG | + | chr1_3:17324872-17324891 | Msa0107270:CDS | 40.0% | |
| !! | ATTTGATGAGATGGTGGAAG+TGG | + | chr1_3:17324984-17325003 | Msa0107270:CDS | 40.0% |
| CCTTGTGATGAACATAACCA+TGG | - | chr1_3:17325143-17325162 | None:intergenic | 40.0% | |
| CCATGGTTATGTTCATCACA+AGG | + | chr1_3:17325140-17325159 | Msa0107270:CDS | 40.0% | |
| ACAAGCTGACACCTTGAAAA+TGG | + | chr1_3:17325817-17325836 | Msa0107270:intron | 40.0% | |
| ! | TTTTAACGAGTTACTCCCTC+CGG | + | chr1_3:17325962-17325981 | Msa0107270:intron | 40.0% |
| ! | TGCTTATATTTAGGACCGGA+GGG | - | chr1_3:17325980-17325999 | None:intergenic | 40.0% |
| ! | TTGCTTATATTTAGGACCGG+AGG | - | chr1_3:17325981-17326000 | None:intergenic | 40.0% |
| GATAAGGTAGAAGTTCCGTT+TGG | + | chr1_3:17326643-17326662 | Msa0107270:intron | 40.0% | |
| GATTTCAAGAAGCGACCAAA+CGG | - | chr1_3:17326661-17326680 | None:intergenic | 40.0% | |
| !! | TGTGTGATTGGTTGCACTTT+TGG | - | chr1_3:17326730-17326749 | None:intergenic | 40.0% |
| AACAAATGCTTAGGCTGTTG+AGG | + | chr1_3:17327015-17327034 | Msa0107270:intron | 40.0% | |
| ! | CACTTCATCCATCCTGTTTT+CGG | + | chr1_3:17327061-17327080 | Msa0107270:CDS | 40.0% |
| ! | ACTTCATCCATCCTGTTTTC+GGG | + | chr1_3:17327062-17327081 | Msa0107270:CDS | 40.0% |
| TTTCTTACCCGAAAACAGGA+TGG | - | chr1_3:17327072-17327091 | None:intergenic | 40.0% | |
| !!! | TAGGGAAAATGGTTTTGAGG+AGG | + | chr1_3:17327163-17327182 | Msa0107270:intron | 40.0% |
| !!! | AGGGAAAATGGTTTTGAGGA+GGG | + | chr1_3:17327164-17327183 | Msa0107270:intron | 40.0% |
| TTCAATGTCCATATCTGTGC+TGG | + | chr1_3:17327508-17327527 | Msa0107270:intron | 40.0% | |
| CACTAGCAGTTATGACAGTT+AGG | - | chr1_3:17327697-17327716 | None:intergenic | 40.0% | |
| ACTGTCATAACTGCTAGTGA+TGG | + | chr1_3:17327698-17327717 | Msa0107270:intron | 40.0% | |
| TGCAAACTACCTATGAGCTA+TGG | - | chr1_3:17327732-17327751 | None:intergenic | 40.0% | |
| GCATGAAGCTAAATTTGGCA+TGG | - | chr1_3:17327812-17327831 | None:intergenic | 40.0% | |
| !! | CTTAGTTTTCACTACACGAC+TGG | + | chr1_3:17327972-17327991 | Msa0107270:intron | 40.0% |
| ! | TAGTTTTCACTACACGACTG+GGG | + | chr1_3:17327974-17327993 | Msa0107270:intron | 40.0% |
| ATTTGCCGGTATCAGCAATA+AGG | + | chr1_3:17328071-17328090 | Msa0107270:intron | 40.0% | |
| GGTATCAGCAATAAGGTTCT+TGG | + | chr1_3:17328078-17328097 | Msa0107270:intron | 40.0% | |
| TATCATAGCATGGATGACCA+TGG | - | chr1_3:17328354-17328373 | None:intergenic | 40.0% | |
| GATGTCCTCCAATCAAATAC+TGG | - | chr1_3:17328427-17328446 | None:intergenic | 40.0% | |
| AAGGGCTTGACTAAGGAATA+AGG | - | chr1_3:17328503-17328522 | None:intergenic | 40.0% | |
| TATTCCTTAGTCAAGCCCTT+TGG | + | chr1_3:17328503-17328522 | Msa0107270:CDS | 40.0% | |
| ! | CTTCTGTCATTTGTGCCAAA+GGG | - | chr1_3:17328521-17328540 | None:intergenic | 40.0% |
| CACAAATGACAGAAGGATAG+AGG | + | chr1_3:17328526-17328545 | Msa0107270:CDS | 40.0% | |
| AGTTACCAACGTTACATGGT+CGG | + | chr1_3:17328721-17328740 | Msa0107270:intron | 40.0% | |
| TCACAACTCAACAAACGTTC+GGG | - | chr1_3:17329052-17329071 | None:intergenic | 40.0% | |
| GTCACAACTCAACAAACGTT+CGG | - | chr1_3:17329053-17329072 | None:intergenic | 40.0% | |
| ! | ACGTTTGTTGAGTTGTGACT+TGG | + | chr1_3:17329054-17329073 | Msa0107270:intron | 40.0% |
| ! | CGTTTGTTGAGTTGTGACTT+GGG | + | chr1_3:17329055-17329074 | Msa0107270:intron | 40.0% |
| ! | GTTTGTTGAGTTGTGACTTG+GGG | + | chr1_3:17329056-17329075 | Msa0107270:intron | 40.0% |
| ! | AACCGGAGTTGTTGTTCTAA+CGG | + | chr1_3:17329302-17329321 | Msa0107270:intron | 40.0% |
| CTAAATCAAGCCCAAAAGTG+AGG | + | chr1_3:17329504-17329523 | Msa0107270:CDS | 40.0% | |
| AACTCTTCAGCAACTCTACA+AGG | - | chr1_3:17329539-17329558 | None:intergenic | 40.0% | |
| TGCAACTAGAGAGTTCTTAG+AGG | + | chr1_3:17329565-17329584 | Msa0107270:CDS | 40.0% | |
| AGAGAGTTCTTAGAGGATGA+TGG | + | chr1_3:17329572-17329591 | Msa0107270:CDS | 40.0% | |
| TTGAAGTTGACCTAGAGAAG+AGG | + | chr1_3:17329597-17329616 | Msa0107270:CDS | 40.0% | |
| !!! | TGCAGGTACAGTGTTGATTT+TGG | + | chr1_3:17329748-17329767 | Msa0107270:intron | 40.0% |
| TTGACACATCTCTTAGCTGA+TGG | + | chr1_3:17329832-17329851 | Msa0107270:CDS | 40.0% | |
| !!! | GGTTTTGGGAGAAGTGAATG+AGG | - | chr1_3:17324400-17324419 | None:intergenic | 45.0% |
| !!! | AAACAGGGGGTGTTGGTTTT+GGG | - | chr1_3:17324414-17324433 | None:intergenic | 45.0% |
| ! | GAATTTGAAACAGGGGGTGT+TGG | - | chr1_3:17324421-17324440 | None:intergenic | 45.0% |
| ! | GGGTGTGAATTTGAAACAGG+GGG | - | chr1_3:17324427-17324446 | None:intergenic | 45.0% |
| ! | GGGGTGTGAATTTGAAACAG+GGG | - | chr1_3:17324428-17324447 | None:intergenic | 45.0% |
| ! | GGGGGTGTGAATTTGAAACA+GGG | - | chr1_3:17324429-17324448 | None:intergenic | 45.0% |
| GTGACTGAGTTCAATCTCTC+TGG | + | chr1_3:17324592-17324611 | Msa0107270:CDS | 45.0% | |
| TTCAACGACAAGCTAATCGG+TGG | + | chr1_3:17324847-17324866 | Msa0107270:CDS | 45.0% | |
| !! | CAAGCTAATCGGTGGATTAG+TGG | + | chr1_3:17324855-17324874 | Msa0107270:CDS | 45.0% |
| ! | ATTTTCCGGTGATATTCCGG+TGG | + | chr1_3:17324948-17324967 | Msa0107270:CDS | 45.0% |
| GAAGGAGGATGAGATAGTGA+AGG | + | chr1_3:17325008-17325027 | Msa0107270:CDS | 45.0% | |
| CAGCTTCTTGTGAGAAACCA+TGG | + | chr1_3:17325123-17325142 | Msa0107270:CDS | 45.0% | |
| CATATGCCATGTGCCAACAA+TGG | + | chr1_3:17325595-17325614 | Msa0107270:intron | 45.0% | |
| CCAAATCCATTGTTGGCACA+TGG | - | chr1_3:17325604-17325623 | None:intergenic | 45.0% | |
| ! | CCATGTGCCAACAATGGATT+TGG | + | chr1_3:17325601-17325620 | Msa0107270:intron | 45.0% |
| TGAAGATGAGGTGGAGAAAG+AGG | + | chr1_3:17326276-17326295 | Msa0107270:intron | 45.0% | |
| GTGGAAATGCGGAAATCTCA+CGG | - | chr1_3:17326601-17326620 | None:intergenic | 45.0% | |
| TCCGCATTTCCACAGAATCA+CGG | + | chr1_3:17326608-17326627 | Msa0107270:intron | 45.0% | |
| ACGGCGAGATTTCGTTGATA+AGG | + | chr1_3:17326627-17326646 | Msa0107270:intron | 45.0% | |
| !! | GTGATTGGTTGCACTTTTGG+TGG | - | chr1_3:17326727-17326746 | None:intergenic | 45.0% |
| AATGCTTAGGCTGTTGAGGT+TGG | + | chr1_3:17327019-17327038 | Msa0107270:intron | 45.0% | |
| CACTATCATTTGTAGCACCC+CGG | - | chr1_3:17327247-17327266 | None:intergenic | 45.0% | |
| !! | CTTGGTTCTACCGAGAAATG+TGG | + | chr1_3:17327533-17327552 | Msa0107270:intron | 45.0% |
| ATGTCAAGGTGCACGATACA+AGG | + | chr1_3:17327644-17327663 | Msa0107270:intron | 45.0% | |
| ! | CATAACTGCTAGTGATGGTG+TGG | + | chr1_3:17327703-17327722 | Msa0107270:intron | 45.0% |
| TTGCTGATACCGGCAAATTC+AGG | - | chr1_3:17328069-17328088 | None:intergenic | 45.0% | |
| CAGGTATGTAAACATGACGC+AGG | + | chr1_3:17328256-17328275 | Msa0107270:intron | 45.0% | |
| GTGATCTTCGATTGCTTCTG+AGG | - | chr1_3:17328481-17328500 | None:intergenic | 45.0% | |
| ! | CCTTCTGTCATTTGTGCCAA+AGG | - | chr1_3:17328522-17328541 | None:intergenic | 45.0% |
| CCTTTGGCACAAATGACAGA+AGG | + | chr1_3:17328519-17328538 | Msa0107270:CDS | 45.0% | |
| AGTAAAAGGGTCATGCATGC+AGG | - | chr1_3:17328649-17328668 | None:intergenic | 45.0% | |
| TCTAGATTCTAGGTCCACCA+AGG | - | chr1_3:17328696-17328715 | None:intergenic | 45.0% | |
| TAAGACCGACCATGTAACGT+TGG | - | chr1_3:17328729-17328748 | None:intergenic | 45.0% | |
| ATGGTCGGTCTTACTAGAAC+TGG | + | chr1_3:17328736-17328755 | Msa0107270:intron | 45.0% | |
| GGAAGGGGAAATTCCACAAT+AGG | + | chr1_3:17328818-17328837 | Msa0107270:intron | 45.0% | |
| AGGGGAAATTCCACAATAGG+TGG | + | chr1_3:17328821-17328840 | Msa0107270:intron | 45.0% | |
| TTGAACCGTTCATCTGGGTT+GGG | - | chr1_3:17329101-17329120 | None:intergenic | 45.0% | |
| AACCCAGATGAACGGTTCAA+GGG | + | chr1_3:17329101-17329120 | Msa0107270:intron | 45.0% | |
| TTCCCTTGAACCGTTCATCT+GGG | - | chr1_3:17329106-17329125 | None:intergenic | 45.0% | |
| ATTCCCTTGAACCGTTCATC+TGG | - | chr1_3:17329107-17329126 | None:intergenic | 45.0% | |
| ACACATCTCTTAGCTGATGG+TGG | + | chr1_3:17329835-17329854 | Msa0107270:CDS | 45.0% | |
| !!! | TTTAAGTTTTTTTTTTTTTT+TGG | + | chr1_3:17325227-17325246 | Msa0107270:intron | 5.0% |
| !! | AATTTAAAAGAAATATTTAA+TGG | + | chr1_3:17325401-17325420 | Msa0107270:intron | 5.0% |
| !!! | GAAACAGGGGGTGTTGGTTT+TGG | - | chr1_3:17324415-17324434 | None:intergenic | 50.0% |
| ! | GGGGGGTGTGAATTTGAAAC+AGG | - | chr1_3:17324430-17324449 | None:intergenic | 50.0% |
| AACGACGACAGCTTGTCGTT+GGG | - | chr1_3:17324646-17324665 | None:intergenic | 50.0% | |
| AACGACAAGCTGTCGTCGTT+GGG | + | chr1_3:17324646-17324665 | Msa0107270:CDS | 50.0% | |
| AACGCGATGAGGAAGAACGA+AGG | + | chr1_3:17324883-17324902 | Msa0107270:CDS | 50.0% | |
| GAAGAACGAAGGCGGTGAAT+TGG | + | chr1_3:17324894-17324913 | Msa0107270:CDS | 50.0% | |
| !! | AATCCATATTCCGGTGCCAC+CGG | - | chr1_3:17324967-17324986 | None:intergenic | 50.0% |
| !! | TGAGATGGTGGAAGTGGAGA+AGG | + | chr1_3:17324990-17325009 | Msa0107270:CDS | 50.0% |
| GCCGTGATTCTGTGGAAATG+CGG | - | chr1_3:17326612-17326631 | None:intergenic | 50.0% | |
| GAAATCTCGCCGTGATTCTG+TGG | - | chr1_3:17326620-17326639 | None:intergenic | 50.0% | |
| ! | CAGACTGCAGCTGCACTTTT+CGG | - | chr1_3:17327272-17327291 | None:intergenic | 50.0% |
| ! | TCCATATCTGTGCTGGTGCT+TGG | + | chr1_3:17327515-17327534 | Msa0107270:intron | 50.0% |
| ACCAAGCACCAGCACAGATA+TGG | - | chr1_3:17327519-17327538 | None:intergenic | 50.0% | |
| TGTGCCAAAGGGCTTGACTA+AGG | - | chr1_3:17328510-17328529 | None:intergenic | 50.0% | |
| ! | ATCCTTAGGGCCGACTCATA+AGG | - | chr1_3:17328595-17328614 | None:intergenic | 50.0% |
| ACATGGCTGACCACCTATTG+TGG | - | chr1_3:17328834-17328853 | None:intergenic | 50.0% | |
| GAGTCATAGTTACCGCCCTT+TGG | + | chr1_3:17329020-17329039 | Msa0107270:intron | 50.0% | |
| ! | TGAGTTGTGACTTGGGGATG+AGG | + | chr1_3:17329062-17329081 | Msa0107270:intron | 50.0% |
| ! | GAGTTGTGACTTGGGGATGA+GGG | + | chr1_3:17329063-17329082 | Msa0107270:intron | 50.0% |
| ACAAGCCCAACCCAGATGAA+CGG | + | chr1_3:17329093-17329112 | Msa0107270:intron | 50.0% | |
| CTTGAACCGTTCATCTGGGT+TGG | - | chr1_3:17329102-17329121 | None:intergenic | 50.0% | |
| CAACCCAGATGAACGGTTCA+AGG | + | chr1_3:17329100-17329119 | Msa0107270:intron | 50.0% | |
| CGCCGTTAGAACAACAACTC+CGG | - | chr1_3:17329307-17329326 | None:intergenic | 50.0% | |
| GATGAAGGGTCCTCTTCTCT+AGG | - | chr1_3:17329610-17329629 | None:intergenic | 50.0% | |
| ACGACGACAGCTTGTCGTTG+GGG | - | chr1_3:17324645-17324664 | None:intergenic | 55.0% | |
| CAACGACGACAGCTTGTCGT+TGG | - | chr1_3:17324647-17324666 | None:intergenic | 55.0% | |
| CAACGACAAGCTGTCGTCGT+TGG | + | chr1_3:17324645-17324664 | Msa0107270:CDS | 55.0% | |
| ACGACAAGCTGTCGTCGTTG+GGG | + | chr1_3:17324647-17324666 | Msa0107270:CDS | 55.0% | |
| GCGATGAGGAAGAACGAAGG+CGG | + | chr1_3:17324886-17324905 | Msa0107270:CDS | 55.0% | |
| ! | ATTCCGGTGGCACCGGAATA+TGG | + | chr1_3:17324961-17324980 | Msa0107270:CDS | 55.0% |
| !! | GATGGTGGAAGTGGAGAAGG+AGG | + | chr1_3:17324993-17325012 | Msa0107270:CDS | 55.0% |
| GTGCAGCTGCAGTCTGTGAT+AGG | + | chr1_3:17327276-17327295 | Msa0107270:CDS | 55.0% | |
| GTGTGGCAGCCATAGCTCAT+AGG | + | chr1_3:17327720-17327739 | Msa0107270:intron | 55.0% | |
| ACATGACGCAGGATCTGCAG+CGG | + | chr1_3:17328267-17328286 | Msa0107270:CDS | 55.0% | |
| TGCCTTATGAGTCGGCCCTA+AGG | + | chr1_3:17328590-17328609 | Msa0107270:intron | 55.0% | |
| TAGTTACCGCCCTTTGGTCC+AGG | + | chr1_3:17329026-17329045 | Msa0107270:intron | 55.0% | |
| ACTCAACAAACGTTCGGGCC+TGG | - | chr1_3:17329047-17329066 | None:intergenic | 55.0% | |
| ! | TTGTGACTTGGGGATGAGGG+TGG | + | chr1_3:17329066-17329085 | Msa0107270:intron | 55.0% |
| !! | CGGTGCCACCGGAATATCAC+CGG | - | chr1_3:17324956-17324975 | None:intergenic | 60.0% |
| CGGTGATATTCCGGTGGCAC+CGG | + | chr1_3:17324954-17324973 | Msa0107270:CDS | 60.0% | |
| CATGACGCAGGATCTGCAGC+GGG | + | chr1_3:17328268-17328287 | Msa0107270:CDS | 60.0% | |
| ACGTTCGGGCCTGGACCAAA+GGG | - | chr1_3:17329038-17329057 | None:intergenic | 60.0% | |
| AACGTTCGGGCCTGGACCAA+AGG | - | chr1_3:17329039-17329058 | None:intergenic | 60.0% | |
| TTCGGGCCTGGACCAAAGGG+CGG | - | chr1_3:17329035-17329054 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 17324271 | 17329933 | 17324271 | ID=Msa0107270;Name=Msa0107270 |
| chr1_3 | mRNA | 17324271 | 17329933 | 17324271 | ID=Msa0107270-mRNA-1;Parent=Msa0107270;Name=Msa0107270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|1|1|6|27|605 |
| chr1_3 | exon | 17324271 | 17325161 | 17324271 | ID=Msa0107270-mRNA-1:exon:6562;Parent=Msa0107270-mRNA-1 |
| chr1_3 | exon | 17327028 | 17327083 | 17327028 | ID=Msa0107270-mRNA-1:exon:6563;Parent=Msa0107270-mRNA-1 |
| chr1_3 | exon | 17327166 | 17327396 | 17327166 | ID=Msa0107270-mRNA-1:exon:6564;Parent=Msa0107270-mRNA-1 |
| chr1_3 | exon | 17328259 | 17328547 | 17328259 | ID=Msa0107270-mRNA-1:exon:6565;Parent=Msa0107270-mRNA-1 |
| chr1_3 | exon | 17329452 | 17329648 | 17329452 | ID=Msa0107270-mRNA-1:exon:6566;Parent=Msa0107270-mRNA-1 |
| chr1_3 | exon | 17329753 | 17329933 | 17329753 | ID=Msa0107270-mRNA-1:exon:6567;Parent=Msa0107270-mRNA-1 |
| chr1_3 | CDS | 17324271 | 17325161 | 17324271 | ID=Msa0107270-mRNA-1:cds;Parent=Msa0107270-mRNA-1 |
| chr1_3 | CDS | 17327028 | 17327083 | 17327028 | ID=Msa0107270-mRNA-1:cds;Parent=Msa0107270-mRNA-1 |
| chr1_3 | CDS | 17327166 | 17327396 | 17327166 | ID=Msa0107270-mRNA-1:cds;Parent=Msa0107270-mRNA-1 |
| chr1_3 | CDS | 17328259 | 17328547 | 17328259 | ID=Msa0107270-mRNA-1:cds;Parent=Msa0107270-mRNA-1 |
| chr1_3 | CDS | 17329452 | 17329648 | 17329452 | ID=Msa0107270-mRNA-1:cds;Parent=Msa0107270-mRNA-1 |
| chr1_3 | CDS | 17329753 | 17329906 | 17329753 | ID=Msa0107270-mRNA-1:cds;Parent=Msa0107270-mRNA-1 |
| chr1_3 | three_prime_UTR | 17329907 | 17329933 | 17329907 | ID=Msa0107270-mRNA-1:three_prime_utr;Parent=Msa0107270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
