Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153830 | XP_013466815.1 | 94.175 | 103 | 6 | 0 | 3 | 105 | 268 | 370 | 1.16e-64 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153830 | sp|P93324|CHOMT_MEDSA | 55.340 | 103 | 45 | 1 | 3 | 105 | 271 | 372 | 3.95e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153830 | A0A072VH10 | 94.175 | 103 | 6 | 0 | 3 | 105 | 268 | 370 | 5.53e-65 | 209 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0153830 | 0.822558 | 2.221212e-53 | -8.615850e-47 |
| Msa0015130 | Msa0153830 | 0.803474 | 3.426991e-49 | -8.615850e-47 |
| Msa0037880 | Msa0153830 | 0.811722 | 6.072021e-51 | -8.615850e-47 |
| Msa0049750 | Msa0153830 | 0.823808 | 1.134397e-53 | -8.615850e-47 |
| Msa0051210 | Msa0153830 | 0.804136 | 2.496734e-49 | -8.615850e-47 |
| Msa0051450 | Msa0153830 | 0.801724 | 7.867848e-49 | -8.615850e-47 |
| Msa0052030 | Msa0153830 | 0.805190 | 1.504562e-49 | -8.615850e-47 |
| Msa0062970 | Msa0153830 | 0.807153 | 5.808082e-50 | -8.615850e-47 |
| Msa0064300 | Msa0153830 | 0.804453 | 2.144935e-49 | -8.615850e-47 |
| Msa0065950 | Msa0153830 | 0.844385 | 7.810133e-59 | -8.615850e-47 |
| Msa0101830 | Msa0153830 | 0.811134 | 8.149872e-51 | -8.615850e-47 |
| Msa0102120 | Msa0153830 | 0.826044 | 3.366798e-54 | -8.615850e-47 |
| Msa0107380 | Msa0153830 | 0.842244 | 2.910916e-58 | -8.615850e-47 |
| Msa0107400 | Msa0153830 | 0.838093 | 3.528474e-57 | -8.615850e-47 |
| Msa0108560 | Msa0153830 | 0.814660 | 1.376156e-51 | -8.615850e-47 |
| Msa0117770 | Msa0153830 | 0.817568 | 3.083306e-52 | -8.615850e-47 |
| Msa0131770 | Msa0153830 | 0.808832 | 2.551283e-50 | -8.615850e-47 |
| Msa0137570 | Msa0153830 | 0.808271 | 3.361755e-50 | -8.615850e-47 |
| Msa0138020 | Msa0153830 | 0.808661 | 2.775377e-50 | -8.615850e-47 |
| Msa0143930 | Msa0153830 | 0.810536 | 1.097738e-50 | -8.615850e-47 |
| Msa0153830 | Msa0153980 | 0.800197 | 1.613908e-48 | -8.615850e-47 |
| Msa0153830 | Msa0164910 | 0.813098 | 3.039903e-51 | -8.615850e-47 |
| Msa0153830 | Msa0206010 | 0.839425 | 1.597227e-57 | -8.615850e-47 |
| Msa0153830 | Msa0216530 | 0.829490 | 5.000050e-55 | -8.615850e-47 |
| Msa0153830 | Msa0223010 | 0.804526 | 2.070788e-49 | -8.615850e-47 |
| Msa0153830 | Msa0226180 | 0.812467 | 4.177177e-51 | -8.615850e-47 |
| Msa0153830 | Msa0233300 | 0.819894 | 9.139047e-53 | -8.615850e-47 |
| Msa0153830 | Msa0236420 | 0.800527 | 1.382452e-48 | -8.615850e-47 |
| Msa0153830 | Msa0270960 | 0.803054 | 4.186765e-49 | -8.615850e-47 |
| Msa0153830 | Msa0287410 | 0.816830 | 4.517010e-52 | -8.615850e-47 |
| Msa0153830 | Msa0315290 | 0.801036 | 1.088272e-48 | -8.615850e-47 |
| Msa0153830 | Msa0319170 | 0.829771 | 4.271580e-55 | -8.615850e-47 |
| Msa0153830 | Msa0321080 | 0.812889 | 3.378541e-51 | -8.615850e-47 |
| Msa0153830 | Msa0326110 | 0.835116 | 2.022905e-56 | -8.615850e-47 |
| Msa0153830 | Msa0339620 | 0.805850 | 1.094086e-49 | -8.615850e-47 |
| Msa0153830 | Msa0344910 | 0.850104 | 2.106913e-60 | -8.615850e-47 |
| Msa0153830 | Msa0344980 | 0.833661 | 4.692029e-56 | -8.615850e-47 |
| Msa0153830 | Msa0346890 | 0.813791 | 2.139897e-51 | -8.615850e-47 |
| Msa0153830 | Msa0357830 | 0.802832 | 4.653224e-49 | -8.615850e-47 |
| Msa0153830 | Msa0363790 | 0.803703 | 3.071640e-49 | -8.615850e-47 |
| Msa0153830 | Msa0376590 | 0.811611 | 6.420986e-51 | -8.615850e-47 |
| Msa0153830 | Msa0376910 | 0.820440 | 6.852040e-53 | -8.615850e-47 |
| Msa0153830 | Msa0379640 | 0.819380 | 1.197317e-52 | -8.615850e-47 |
| Msa0153830 | Msa0382180 | 0.811845 | 5.711587e-51 | -8.615850e-47 |
| Msa0153830 | Msa0389810 | 0.813277 | 2.777255e-51 | -8.615850e-47 |
| Msa0153830 | Msa0392280 | 0.813520 | 2.455908e-51 | -8.615850e-47 |
| Msa0153830 | Msa0412840 | 0.808169 | 3.533970e-50 | -8.615850e-47 |
| Msa0153830 | Msa0431690 | 0.846930 | 1.593695e-59 | -8.615850e-47 |
| Msa0153830 | Msa0433530 | 0.833853 | 4.200711e-56 | -8.615850e-47 |
| Msa0153830 | Msa0438040 | 0.801840 | 7.445340e-49 | -8.615850e-47 |
| Msa0153830 | Msa0442200 | 0.801820 | 7.517841e-49 | -8.615850e-47 |
| Msa0153830 | Msa0471900 | 0.832617 | 8.534455e-56 | -8.615850e-47 |
| Msa0153830 | Msa0477260 | 0.846616 | 1.941839e-59 | -8.615850e-47 |
| Msa0153830 | Msa0487710 | 0.801811 | 7.550800e-49 | -8.615850e-47 |
| Msa0153830 | Msa0491220 | 0.806814 | 6.850718e-50 | -8.615850e-47 |
| Msa0153830 | Msa0512750 | 0.802386 | 5.749841e-49 | -8.615850e-47 |
| Msa0153830 | Msa0534410 | 0.812007 | 5.265051e-51 | -8.615850e-47 |
| Msa0153830 | Msa0599890 | 0.807089 | 5.992355e-50 | -8.615850e-47 |
| Msa0153830 | Msa0610430 | 0.804933 | 1.702599e-49 | -8.615850e-47 |
| Msa0153830 | Msa0620960 | 0.818218 | 2.198714e-52 | -8.615850e-47 |
| Msa0153830 | Msa0621790 | 0.818810 | 1.613705e-52 | -8.615850e-47 |
| Msa0153830 | Msa0649130 | 0.800296 | 1.540632e-48 | -8.615850e-47 |
| Msa0153830 | Msa0653490 | 0.855556 | 5.828759e-62 | -8.615850e-47 |
| Msa0153830 | Msa0673460 | 0.814887 | 1.225550e-51 | -8.615850e-47 |
| Msa0153830 | Msa0722070 | 0.807067 | 6.057512e-50 | -8.615850e-47 |
| Msa0153830 | Msa0723110 | 0.804691 | 1.912916e-49 | -8.615850e-47 |
| Msa0153830 | Msa0731180 | 0.848624 | 5.443314e-60 | -8.615850e-47 |
| Msa0153830 | Msa0771580 | 0.840210 | 9.972458e-58 | -8.615850e-47 |
| Msa0153830 | Msa0771720 | 0.813726 | 2.211798e-51 | -8.615850e-47 |
| Msa0153830 | Msa0773850 | 0.806397 | 8.391832e-50 | -8.615850e-47 |
| Msa0153830 | Msa0788540 | 0.809575 | 1.768612e-50 | -8.615850e-47 |
| Msa0153830 | Msa0795080 | 0.816710 | 4.805829e-52 | -8.615850e-47 |
| Msa0153830 | Msa0795720 | 0.810887 | 9.216730e-51 | -8.615850e-47 |
| Msa0153830 | Msa0798860 | 0.801992 | 6.930742e-49 | -8.615850e-47 |
| Msa0153830 | Msa0820850 | 0.831625 | 1.501109e-55 | -8.615850e-47 |
| Msa0153830 | Msa0831850 | 0.800691 | 1.280015e-48 | -8.615850e-47 |
| Msa0153830 | Msa0833460 | 0.812138 | 4.929078e-51 | -8.615850e-47 |
| Msa0153830 | Msa0843250 | 0.802676 | 5.010740e-49 | -8.615850e-47 |
| Msa0153830 | Msa0849030 | 0.816484 | 5.401294e-52 | -8.615850e-47 |
| Msa0153830 | Msa0859070 | 0.815686 | 8.141963e-52 | -8.615850e-47 |
| Msa0153830 | Msa0861130 | 0.833965 | 3.939104e-56 | -8.615850e-47 |
| Msa0153830 | Msa0869120 | 0.813061 | 3.097572e-51 | -8.615850e-47 |
| Msa0153830 | Msa0871430 | 0.813251 | 2.813517e-51 | -8.615850e-47 |
| Msa0153830 | Msa0876580 | 0.808248 | 3.399888e-50 | -8.615850e-47 |
| Msa0153830 | Msa0905730 | 0.818444 | 1.953527e-52 | -8.615850e-47 |
| Msa0153830 | Msa0910000 | 0.811776 | 5.911376e-51 | -8.615850e-47 |
| Msa0153830 | Msa0915610 | 0.827109 | 1.875809e-54 | -8.615850e-47 |
| Msa0153830 | Msa0933100 | 0.804910 | 1.722132e-49 | -8.615850e-47 |
| Msa0153830 | Msa0947760 | 0.813781 | 2.150939e-51 | -8.615850e-47 |
| Msa0153830 | Msa0958920 | 0.826586 | 2.501008e-54 | -8.615850e-47 |
| Msa0153830 | Msa0969520 | 0.806427 | 8.268870e-50 | -8.615850e-47 |
| Msa0153830 | Msa0972960 | 0.804996 | 1.652137e-49 | -8.615850e-47 |
| Msa0153830 | Msa0982270 | 0.812635 | 3.838933e-51 | -8.615850e-47 |
| Msa0153830 | Msa1008400 | 0.820266 | 7.512971e-53 | -8.615850e-47 |
| Msa0153830 | Msa1008450 | 0.808765 | 2.636952e-50 | -8.615850e-47 |
| Msa0153830 | Msa1013070 | 0.804921 | 1.712547e-49 | -8.615850e-47 |
| Msa0153830 | Msa1014540 | 0.806387 | 8.432510e-50 | -8.615850e-47 |
| Msa0153830 | Msa1014990 | 0.801693 | 7.982902e-49 | -8.615850e-47 |
| Msa0153830 | Msa1023180 | 0.813135 | 2.983044e-51 | -8.615850e-47 |
| Msa0153830 | Msa1043050 | 0.812025 | 5.216938e-51 | -8.615850e-47 |
| Msa0153830 | Msa1082500 | 0.816978 | 4.183835e-52 | -8.615850e-47 |
| Msa0153830 | Msa1087990 | 0.812661 | 3.789790e-51 | -8.615850e-47 |
| Msa0153830 | Msa1090260 | 0.818517 | 1.880568e-52 | -8.615850e-47 |
| Msa0153830 | Msa1100050 | 0.802617 | 5.152279e-49 | -8.615850e-47 |
| Msa0153830 | Msa1107260 | 0.805806 | 1.117428e-49 | -8.615850e-47 |
| Msa0153830 | Msa1129550 | 0.822993 | 1.759788e-53 | -8.615850e-47 |
| Msa0153830 | Msa1129730 | 0.821313 | 4.315815e-53 | -8.615850e-47 |
| Msa0153830 | Msa1150710 | 0.819704 | 1.009933e-52 | -8.615850e-47 |
| Msa0153830 | Msa1174040 | 0.820257 | 7.548115e-53 | -8.615850e-47 |
| Msa0153830 | Msa1181800 | 0.816311 | 5.903714e-52 | -8.615850e-47 |
| Msa0153830 | Msa1186360 | 0.806067 | 9.849181e-50 | -8.615850e-47 |
| Msa0153830 | Msa1233890 | 0.802815 | 4.690634e-49 | -8.615850e-47 |
| Msa0153830 | Msa1249490 | 0.801244 | 9.867931e-49 | -8.615850e-47 |
| Msa0153830 | Msa1250530 | 0.802088 | 6.623242e-49 | -8.615850e-47 |
| Msa0153830 | Msa1268880 | 0.800822 | 1.203320e-48 | -8.615850e-47 |
| Msa0153830 | Msa1269940 | 0.803594 | 3.236321e-49 | -8.615850e-47 |
| Msa0153830 | Msa1270660 | 0.817484 | 3.219089e-52 | -8.615850e-47 |
| Msa0153830 | Msa1270730 | 0.844139 | 9.093425e-59 | -8.615850e-47 |
| Msa0153830 | Msa1276440 | 0.817466 | 3.249386e-52 | -8.615850e-47 |
| Msa0153830 | Msa1279210 | 0.801864 | 7.362011e-49 | -8.615850e-47 |
| Msa0153830 | Msa1284680 | 0.804676 | 1.927226e-49 | -8.615850e-47 |
| Msa0153830 | Msa1305340 | 0.800773 | 1.231737e-48 | -8.615850e-47 |
| Msa0153830 | Msa1307740 | 0.807094 | 5.978632e-50 | -8.615850e-47 |
| Msa0153830 | Msa1314340 | 0.804158 | 2.471131e-49 | -8.615850e-47 |
| Msa0153830 | Msa1335230 | 0.842497 | 2.495017e-58 | -8.615850e-47 |
| Msa0153830 | Msa1348600 | 0.828698 | 7.780199e-55 | -8.615850e-47 |
| Msa0153830 | Msa1348850 | 0.809474 | 1.858614e-50 | -8.615850e-47 |
| Msa0153830 | Msa1376930 | 0.802739 | 4.862924e-49 | -8.615850e-47 |
| Msa0153830 | Msa1377080 | 0.810914 | 9.096017e-51 | -8.615850e-47 |
| Msa0153830 | Msa1397120 | 0.841951 | 3.480401e-58 | -8.615850e-47 |
| Msa0153830 | Msa1403890 | 0.834759 | 2.488721e-56 | -8.615850e-47 |
| Msa0153830 | Msa1404550 | 0.807511 | 4.878361e-50 | -8.615850e-47 |
| Msa0153830 | Msa1407600 | 0.844652 | 6.621157e-59 | -8.615850e-47 |
| Msa0153830 | Msa1423820 | 0.839132 | 1.902244e-57 | -8.615850e-47 |
| Msa0153830 | Msa1427230 | 0.820906 | 5.354234e-53 | -8.615850e-47 |
| Msa0153830 | Msa1435270 | 0.807263 | 5.506161e-50 | -8.615850e-47 |
| Msa0153830 | Msa1444740 | 0.805862 | 1.087690e-49 | -8.615850e-47 |
| Msa0153830 | Msa1451620 | -0.816868 | 4.428976e-52 | -8.615850e-47 |
| Msa0153830 | Msa1460830 | 0.818370 | 2.031367e-52 | -8.615850e-47 |
| Msa0153830 | Msa1462070 | 0.819647 | 1.040597e-52 | -8.615850e-47 |
| Msa0153830 | Msa1466730 | 0.822530 | 2.255469e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153830 | MtrunA17_Chr1g0163601 | 94.175 | 103 | 6 | 0 | 3 | 105 | 268 | 370 | 1.06e-68 | 209 |
| Msa0153830 | MtrunA17_Chr1g0163611 | 89.320 | 103 | 11 | 0 | 3 | 105 | 268 | 370 | 1.00e-65 | 202 |
| Msa0153830 | MtrunA17_Chr1g0163621 | 82.524 | 103 | 18 | 0 | 3 | 105 | 282 | 384 | 2.51e-60 | 189 |
| Msa0153830 | MtrunA17_Chr1g0170951 | 67.033 | 91 | 29 | 1 | 7 | 97 | 9 | 98 | 5.58e-39 | 125 |
| Msa0153830 | MtrunA17_Chr1g0200491 | 54.369 | 103 | 46 | 1 | 3 | 105 | 271 | 372 | 7.72e-39 | 132 |
| Msa0153830 | MtrunA17_Chr2g0307521 | 53.398 | 103 | 47 | 1 | 3 | 105 | 262 | 363 | 1.06e-36 | 127 |
| Msa0153830 | MtrunA17_Chr7g0218131 | 52.427 | 103 | 48 | 1 | 3 | 105 | 269 | 370 | 2.60e-36 | 126 |
| Msa0153830 | MtrunA17_Chr7g0218271 | 55.340 | 103 | 45 | 1 | 3 | 105 | 274 | 375 | 1.86e-34 | 121 |
| Msa0153830 | MtrunA17_Chr7g0218181 | 48.544 | 103 | 52 | 1 | 3 | 105 | 266 | 367 | 3.60e-34 | 120 |
| Msa0153830 | MtrunA17_Chr7g0218301 | 54.369 | 103 | 46 | 1 | 3 | 105 | 274 | 375 | 5.05e-34 | 120 |
| Msa0153830 | MtrunA17_Chr7g0218261 | 51.456 | 103 | 49 | 1 | 3 | 105 | 267 | 368 | 3.33e-33 | 118 |
| Msa0153830 | MtrunA17_Chr3g0085211 | 53.398 | 103 | 46 | 2 | 3 | 105 | 270 | 370 | 9.38e-31 | 111 |
| Msa0153830 | MtrunA17_Chr7g0218211 | 46.602 | 103 | 54 | 1 | 3 | 105 | 268 | 369 | 3.38e-30 | 110 |
| Msa0153830 | MtrunA17_Chr3g0085201 | 49.515 | 103 | 50 | 2 | 3 | 105 | 257 | 357 | 9.56e-29 | 106 |
| Msa0153830 | MtrunA17_Chr3g0128011 | 46.154 | 104 | 53 | 2 | 3 | 105 | 316 | 417 | 3.56e-26 | 100 |
| Msa0153830 | MtrunA17_Chr5g0448091 | 45.192 | 104 | 54 | 2 | 3 | 105 | 262 | 363 | 1.16e-24 | 95.5 |
| Msa0153830 | MtrunA17_Chr7g0276401 | 46.154 | 104 | 53 | 2 | 3 | 105 | 274 | 375 | 1.51e-24 | 95.1 |
| Msa0153830 | MtrunA17_Chr8g0345851 | 42.308 | 104 | 57 | 2 | 3 | 105 | 189 | 290 | 1.04e-22 | 89.0 |
| Msa0153830 | MtrunA17_Chr8g0367491 | 40.385 | 104 | 59 | 2 | 3 | 105 | 275 | 376 | 4.23e-22 | 88.6 |
| Msa0153830 | MtrunA17_Chr8g0367391 | 44.554 | 101 | 53 | 2 | 6 | 105 | 36 | 134 | 7.59e-22 | 83.2 |
| Msa0153830 | MtrunA17_Chr8g0367441 | 45.192 | 104 | 54 | 2 | 3 | 105 | 276 | 377 | 7.85e-22 | 87.8 |
| Msa0153830 | MtrunA17_Chr8g0367461 | 37.500 | 104 | 62 | 2 | 3 | 105 | 11 | 112 | 1.69e-21 | 81.6 |
| Msa0153830 | MtrunA17_Chr8g0367501 | 39.423 | 104 | 62 | 1 | 3 | 105 | 262 | 365 | 1.78e-21 | 87.0 |
| Msa0153830 | MtrunA17_Chr8g0367451 | 44.231 | 104 | 55 | 2 | 3 | 105 | 275 | 376 | 2.26e-21 | 86.7 |
| Msa0153830 | MtrunA17_Chr7g0276411 | 42.308 | 104 | 57 | 2 | 3 | 105 | 261 | 362 | 2.29e-21 | 86.3 |
| Msa0153830 | MtrunA17_Chr5g0432261 | 37.143 | 105 | 61 | 2 | 3 | 104 | 224 | 326 | 4.83e-18 | 77.0 |
| Msa0153830 | MtrunA17_Chr4g0022021 | 42.222 | 90 | 47 | 4 | 3 | 89 | 267 | 354 | 4.83e-17 | 74.7 |
| Msa0153830 | MtrunA17_Chr4g0046531 | 38.889 | 90 | 52 | 1 | 3 | 89 | 253 | 342 | 8.90e-17 | 74.3 |
| Msa0153830 | MtrunA17_Chr4g0046531 | 34.951 | 103 | 62 | 2 | 5 | 104 | 617 | 717 | 7.71e-16 | 71.6 |
| Msa0153830 | MtrunA17_Chr5g0432241 | 37.736 | 106 | 60 | 3 | 3 | 104 | 256 | 359 | 2.11e-15 | 70.1 |
| Msa0153830 | MtrunA17_Chr3g0130061 | 43.590 | 78 | 42 | 1 | 12 | 87 | 265 | 342 | 2.25e-15 | 70.1 |
| Msa0153830 | MtrunA17_Chr3g0121301 | 40.449 | 89 | 50 | 2 | 4 | 89 | 259 | 347 | 3.59e-15 | 69.3 |
| Msa0153830 | MtrunA17_Chr4g0046341 | 34.286 | 105 | 64 | 2 | 3 | 104 | 261 | 363 | 4.55e-15 | 68.9 |
| Msa0153830 | MtrunA17_Chr6g0482291 | 38.043 | 92 | 54 | 2 | 15 | 105 | 87 | 176 | 5.06e-15 | 66.6 |
| Msa0153830 | MtrunA17_Chr5g0432301 | 36.792 | 106 | 61 | 3 | 3 | 104 | 256 | 359 | 6.95e-15 | 68.6 |
| Msa0153830 | MtrunA17_Chr5g0432211 | 35.849 | 106 | 62 | 3 | 3 | 104 | 241 | 344 | 1.15e-14 | 67.8 |
| Msa0153830 | MtrunA17_Chr4g0021981 | 38.462 | 91 | 49 | 5 | 3 | 89 | 267 | 354 | 1.96e-14 | 67.4 |
| Msa0153830 | MtrunA17_Chr4g0046361 | 34.286 | 105 | 64 | 2 | 3 | 104 | 258 | 360 | 2.87e-14 | 67.0 |
| Msa0153830 | MtrunA17_Chr8g0367381 | 44.286 | 70 | 38 | 1 | 3 | 71 | 257 | 326 | 7.12e-14 | 65.5 |
| Msa0153830 | MtrunA17_Chr5g0432251 | 33.962 | 106 | 64 | 3 | 3 | 104 | 255 | 358 | 7.23e-14 | 65.9 |
| Msa0153830 | MtrunA17_Chr7g0219141 | 34.286 | 105 | 63 | 3 | 3 | 104 | 255 | 356 | 1.02e-13 | 65.5 |
| Msa0153830 | MtrunA17_Chr1g0188391 | 34.444 | 90 | 55 | 2 | 3 | 89 | 259 | 347 | 2.09e-13 | 64.3 |
| Msa0153830 | MtrunA17_Chr3g0130011 | 37.143 | 105 | 62 | 3 | 3 | 105 | 256 | 358 | 3.17e-13 | 63.9 |
| Msa0153830 | MtrunA17_Chr2g0314271 | 37.234 | 94 | 50 | 3 | 3 | 89 | 252 | 343 | 4.22e-13 | 63.5 |
| Msa0153830 | MtrunA17_Chr4g0040621 | 36.264 | 91 | 55 | 1 | 3 | 90 | 266 | 356 | 4.84e-13 | 63.5 |
| Msa0153830 | MtrunA17_Chr7g0219171 | 34.066 | 91 | 56 | 2 | 3 | 90 | 146 | 235 | 8.60e-13 | 62.0 |
| Msa0153830 | MtrunA17_Chr7g0223241 | 33.333 | 90 | 57 | 1 | 3 | 89 | 247 | 336 | 9.11e-13 | 62.8 |
| Msa0153830 | MtrunA17_Chr7g0219161 | 34.066 | 91 | 56 | 2 | 3 | 90 | 255 | 344 | 1.32e-12 | 62.0 |
| Msa0153830 | MtrunA17_Chr1g0188371 | 33.333 | 84 | 53 | 1 | 3 | 83 | 257 | 340 | 1.55e-12 | 62.0 |
| Msa0153830 | MtrunA17_Chr4g0011691 | 37.778 | 90 | 49 | 4 | 8 | 95 | 140 | 224 | 1.79e-11 | 58.2 |
| Msa0153830 | MtrunA17_Chr7g0223231 | 31.111 | 90 | 59 | 1 | 3 | 89 | 247 | 336 | 3.74e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153830 | AT5G54160.1 | 46.154 | 91 | 48 | 1 | 3 | 92 | 260 | 350 | 3.08e-23 | 92.0 |
| Msa0153830 | AT1G51990.1 | 46.429 | 84 | 43 | 2 | 3 | 84 | 260 | 343 | 1.47e-20 | 84.7 |
| Msa0153830 | AT1G51990.2 | 46.429 | 84 | 43 | 2 | 3 | 84 | 260 | 343 | 1.64e-20 | 84.3 |
| Msa0153830 | AT1G33030.1 | 39.423 | 104 | 60 | 2 | 3 | 105 | 249 | 350 | 1.08e-19 | 82.0 |
| Msa0153830 | AT1G77520.1 | 35.238 | 105 | 64 | 2 | 3 | 105 | 279 | 381 | 3.27e-19 | 81.3 |
| Msa0153830 | AT1G62900.1 | 37.143 | 105 | 62 | 3 | 3 | 105 | 103 | 205 | 2.12e-18 | 76.6 |
| Msa0153830 | AT1G77530.1 | 38.095 | 105 | 61 | 2 | 3 | 105 | 279 | 381 | 3.58e-18 | 78.2 |
| Msa0153830 | AT1G21110.1 | 41.758 | 91 | 51 | 2 | 3 | 91 | 271 | 361 | 1.10e-17 | 76.6 |
| Msa0153830 | AT1G63140.4 | 37.143 | 105 | 62 | 3 | 3 | 105 | 299 | 401 | 1.25e-17 | 76.6 |
| Msa0153830 | AT1G63140.2 | 37.143 | 105 | 62 | 3 | 3 | 105 | 279 | 381 | 1.35e-17 | 76.6 |
| Msa0153830 | AT1G76790.1 | 40.217 | 92 | 53 | 2 | 3 | 92 | 263 | 354 | 4.26e-17 | 75.1 |
| Msa0153830 | AT1G21100.1 | 40.659 | 91 | 52 | 2 | 3 | 91 | 271 | 361 | 5.96e-17 | 74.7 |
| Msa0153830 | AT1G21130.1 | 40.659 | 91 | 52 | 2 | 3 | 91 | 271 | 361 | 7.72e-17 | 74.3 |
| Msa0153830 | AT1G21120.1 | 39.560 | 91 | 53 | 2 | 3 | 91 | 271 | 361 | 1.82e-15 | 70.5 |
| Msa0153830 | AT1G21120.2 | 39.560 | 91 | 53 | 2 | 3 | 91 | 319 | 409 | 2.59e-15 | 70.5 |
| Msa0153830 | AT5G53810.1 | 36.190 | 105 | 63 | 3 | 3 | 105 | 276 | 378 | 1.40e-14 | 68.2 |
| Msa0153830 | AT5G37170.3 | 37.143 | 105 | 62 | 4 | 3 | 105 | 84 | 186 | 1.66e-14 | 65.9 |
| Msa0153830 | AT5G37170.2 | 37.143 | 105 | 62 | 4 | 3 | 105 | 132 | 234 | 3.27e-14 | 66.2 |
| Msa0153830 | AT5G37170.1 | 37.143 | 105 | 62 | 4 | 3 | 105 | 232 | 334 | 3.34e-14 | 67.0 |
| Msa0153830 | AT3G53140.1 | 36.782 | 87 | 53 | 1 | 3 | 87 | 257 | 343 | 4.79e-13 | 63.9 |
| Msa0153830 | AT4G35160.1 | 33.333 | 96 | 55 | 3 | 3 | 89 | 272 | 367 | 1.07e-12 | 62.8 |
| Msa0153830 | AT4G35150.1 | 35.417 | 96 | 53 | 3 | 3 | 89 | 215 | 310 | 1.08e-12 | 62.8 |
Find 34 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.132120 | 1_4:-17751474 | Msa0153830:five_prime_UTR |
| TTCAGCTTGTATGTCATAAC+TGG | 0.238308 | 1_4:-17750389 | Msa0153830:intron |
| ACTGCAAGCCACATGAAATT+TGG | 0.251048 | 1_4:+17750149 | None:intergenic |
| ACAATCACCTTTCCATGTTT+TGG | 0.254262 | 1_4:+17750318 | None:intergenic |
| ACATGGAAAGGTGATTGTTT+TGG | 0.270336 | 1_4:-17750313 | Msa0153830:CDS |
| CAAATCCTTTATAAAATTGA+AGG | 0.338328 | 1_4:+17751558 | None:intergenic |
| ATTCAATTCTTTGTTTGTCT+TGG | 0.352712 | 1_4:+17751634 | None:intergenic |
| CTGGTCCACTAGAAATTAAA+AGG | 0.360373 | 1_4:-17751583 | Msa0153830:five_prime_UTR |
| TTGCTAGGGTTTGGCACCTC+TGG | 0.367599 | 1_4:+17750279 | None:intergenic |
| TCTCAATATCCTTCAATTAA+GGG | 0.372954 | 1_4:-17751473 | Msa0153830:five_prime_UTR |
| AACAAAGCAATGGCTCATTC+TGG | 0.386461 | 1_4:-17751602 | Msa0153830:five_prime_UTR |
| AGTGTTGCCTCAGCCTTGTC+TGG | 0.392907 | 1_4:-17750129 | Msa0153830:CDS |
| GTGATGTCCCATTGATACTT+TGG | 0.394783 | 1_4:+17751669 | None:intergenic |
| CAATTAATTCCCTTAATTGA+AGG | 0.401052 | 1_4:+17751464 | None:intergenic |
| TTAGACATATTGCTAGGGTT+TGG | 0.425493 | 1_4:+17750270 | None:intergenic |
| CTTGCAGGGGTGATGCAAAA+AGG | 0.440297 | 1_4:-17751726 | None:intergenic |
| CTCAGCCTTGTCTGGAGTGA+TGG | 0.473302 | 1_4:-17750121 | Msa0153830:CDS |
| GTCTCAACGTTGGTTGATGT+TGG | 0.478000 | 1_4:-17751530 | Msa0153830:five_prime_UTR |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1_4:+17750264 | None:intergenic |
| AAAGTTACTTACTAGTAACT+TGG | 0.485082 | 1_4:-17750082 | Msa0153830:three_prime_UTR |
| CAAAATGCACCTTCTCATCC+AGG | 0.503022 | 1_4:-17751422 | Msa0153830:intron |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.512057 | 1_4:-17751518 | Msa0153830:five_prime_UTR |
| GAGAACTTATGTAAGAGAGC+TGG | 0.513125 | 1_4:-17750177 | Msa0153830:CDS |
| CACAAAGCTTTACCAAAACA+TGG | 0.519164 | 1_4:-17750330 | Msa0153830:CDS |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1_4:+17750265 | None:intergenic |
| ACGTTGGTTGATGTTGGAGG+TGG | 0.561128 | 1_4:-17751524 | Msa0153830:five_prime_UTR |
| TCAACGTTGGTTGATGTTGG+AGG | 0.571903 | 1_4:-17751527 | Msa0153830:five_prime_UTR |
| TGATACTTGTAACAAAGCAA+TGG | 0.601012 | 1_4:-17751612 | Msa0153830:five_prime_UTR |
| AGCTTTACCAAAACATGGAA+AGG | 0.604460 | 1_4:-17750325 | Msa0153830:CDS |
| TCAGCTTGTATGTCATAACT+GGG | 0.621256 | 1_4:-17750388 | Msa0153830:intron |
| TTTGGATTATATAATTCCAG+AGG | 0.632094 | 1_4:-17750295 | Msa0153830:CDS |
| AAATTCCATCACTCCAGACA+AGG | 0.633094 | 1_4:+17750116 | None:intergenic |
| CATCACTCCAGACAAGGCTG+AGG | 0.653766 | 1_4:+17750122 | None:intergenic |
| ATTTGAAGGAGTCTCAACGT+TGG | 0.664672 | 1_4:-17751540 | Msa0153830:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATT+TGG | - | chr1_4:17750448-17750467 | Msa0153830:intron | 0.0% |
| !! | TATATATATATATATATATT+TGG | - | chr1_4:17750448-17750467 | Msa0153830:intron | 0.0% |
| !!! | CATAATTTAAAATATAGTAA+AGG | + | chr1_4:17750475-17750494 | None:intergenic | 10.0% |
| !!! | AAAAAAGTATGAAATTTTTA+AGG | - | chr1_4:17750592-17750611 | Msa0153830:intron | 10.0% |
| !!! | TTATAAGTATGAAATTTTTA+AGG | - | chr1_4:17750666-17750685 | Msa0153830:intron | 10.0% |
| !! | AAAGAAAAATAAAATGATTA+GGG | + | chr1_4:17751291-17751310 | None:intergenic | 10.0% |
| !! | TAAAGAAAAATAAAATGATT+AGG | + | chr1_4:17751292-17751311 | None:intergenic | 10.0% |
| !!! | CATAATTTAAAATATAGTAA+AGG | + | chr1_4:17750475-17750494 | None:intergenic | 10.0% |
| !!! | AAAAAAGTATGAAATTTTTA+AGG | - | chr1_4:17750592-17750611 | Msa0153830:intron | 10.0% |
| !!! | TTATAAGTATGAAATTTTTA+AGG | - | chr1_4:17750666-17750685 | Msa0153830:intron | 10.0% |
| !! | AAAGAAAAATAAAATGATTA+GGG | + | chr1_4:17751291-17751310 | None:intergenic | 10.0% |
| !! | TAAAGAAAAATAAAATGATT+AGG | + | chr1_4:17751292-17751311 | None:intergenic | 10.0% |
| !! | TCTCGTTATTATTATAATAT+TGG | + | chr1_4:17750377-17750396 | None:intergenic | 15.0% |
| !!! | ATTTCATACTTTTTTATTTG+TGG | + | chr1_4:17750587-17750606 | None:intergenic | 15.0% |
| !! | TAACAATGTATTTATAAATG+AGG | - | chr1_4:17751044-17751063 | Msa0153830:intron | 15.0% |
| !! | TCTCGTTATTATTATAATAT+TGG | + | chr1_4:17750377-17750396 | None:intergenic | 15.0% |
| !!! | ATTTCATACTTTTTTATTTG+TGG | + | chr1_4:17750587-17750606 | None:intergenic | 15.0% |
| !! | TAACAATGTATTTATAAATG+AGG | - | chr1_4:17751044-17751063 | Msa0153830:intron | 15.0% |
| !! | CAAATCCTTTATAAAATTGA+AGG | + | chr1_4:17750184-17750203 | None:intergenic | 20.0% |
| !!! | CAATTTTATAAAGGATTTGA+AGG | - | chr1_4:17750185-17750204 | Msa0153830:CDS | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_4:17750639-17750658 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_4:17750639-17750658 | None:intergenic | 20.0% |
| !!! | ACTTGTTTACTATTTTTCAA+AGG | - | chr1_4:17750753-17750772 | Msa0153830:intron | 20.0% |
| !! | AAATATTCCATTTATTCCTT+AGG | + | chr1_4:17750969-17750988 | None:intergenic | 20.0% |
| !!! | CTAACAATAATTGTTGTTTT+TGG | + | chr1_4:17751000-17751019 | None:intergenic | 20.0% |
| !!! | AATGATTAGGGATTTTTTTT+AGG | + | chr1_4:17751279-17751298 | None:intergenic | 20.0% |
| !! | CAAATCCTTTATAAAATTGA+AGG | + | chr1_4:17750184-17750203 | None:intergenic | 20.0% |
| !!! | CAATTTTATAAAGGATTTGA+AGG | - | chr1_4:17750185-17750204 | Msa0153830:CDS | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_4:17750639-17750658 | None:intergenic | 20.0% |
| !! | AAAAGTAATGTGAAAGTAAA+GGG | + | chr1_4:17750639-17750658 | None:intergenic | 20.0% |
| !!! | ACTTGTTTACTATTTTTCAA+AGG | - | chr1_4:17750753-17750772 | Msa0153830:intron | 20.0% |
| !! | AAATATTCCATTTATTCCTT+AGG | + | chr1_4:17750969-17750988 | None:intergenic | 20.0% |
| !!! | CTAACAATAATTGTTGTTTT+TGG | + | chr1_4:17751000-17751019 | None:intergenic | 20.0% |
| !!! | AATGATTAGGGATTTTTTTT+AGG | + | chr1_4:17751279-17751298 | None:intergenic | 20.0% |
| !!! | AATCTTTTCCAAAGTATCAA+TGG | - | chr1_4:17750062-17750081 | Msa0153830:three_prime_UTR | 25.0% |
| !!! | ATCTTTTCCAAAGTATCAAT+GGG | - | chr1_4:17750063-17750082 | Msa0153830:three_prime_UTR | 25.0% |
| !! | ATTCAATTCTTTGTTTGTCT+TGG | + | chr1_4:17750108-17750127 | None:intergenic | 25.0% |
| !! | AGGATCCTTCAATTTTATAA+AGG | - | chr1_4:17750176-17750195 | Msa0153830:CDS | 25.0% |
| !! | TTGAGAGATAATGAGTTTTA+GGG | + | chr1_4:17750252-17750271 | None:intergenic | 25.0% |
| !! | ATTGAGAGATAATGAGTTTT+AGG | + | chr1_4:17750253-17750272 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_4:17750266-17750285 | Msa0153830:CDS | 25.0% |
| ! | CAATTAATTCCCTTAATTGA+AGG | + | chr1_4:17750278-17750297 | None:intergenic | 25.0% |
| !! | AGAGATTGATATATTTTACC+TGG | + | chr1_4:17750338-17750357 | None:intergenic | 25.0% |
| ! | TACAATGCATAAAATATGCA+AGG | - | chr1_4:17750532-17750551 | Msa0153830:intron | 25.0% |
| !!! | TCATACTTTTTTATTTGTGG+TGG | + | chr1_4:17750584-17750603 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_4:17750640-17750659 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_4:17750640-17750659 | None:intergenic | 25.0% |
| ! | ACAAACACAACAAAAGTTTA+TGG | + | chr1_4:17751139-17751158 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGTTGTGTTTGT+AGG | - | chr1_4:17751139-17751158 | Msa0153830:intron | 25.0% |
| !!! | AAACTTTTGTTGTGTTTGTA+GGG | - | chr1_4:17751140-17751159 | Msa0153830:intron | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_4:17751444-17751463 | Msa0153830:five_prime_UTR | 25.0% |
| ! | AAAGTTACTTACTAGTAACT+TGG | - | chr1_4:17751657-17751676 | Msa0153830:five_prime_UTR | 25.0% |
| ! | AGTAAGACAACAATTTCATA+GGG | - | chr1_4:17751722-17751741 | Msa0153830:five_prime_UTR | 25.0% |
| !!! | AATCTTTTCCAAAGTATCAA+TGG | - | chr1_4:17750062-17750081 | Msa0153830:three_prime_UTR | 25.0% |
| !!! | ATCTTTTCCAAAGTATCAAT+GGG | - | chr1_4:17750063-17750082 | Msa0153830:three_prime_UTR | 25.0% |
| !! | ATTCAATTCTTTGTTTGTCT+TGG | + | chr1_4:17750108-17750127 | None:intergenic | 25.0% |
| !! | AGGATCCTTCAATTTTATAA+AGG | - | chr1_4:17750176-17750195 | Msa0153830:CDS | 25.0% |
| !! | TTGAGAGATAATGAGTTTTA+GGG | + | chr1_4:17750252-17750271 | None:intergenic | 25.0% |
| !! | ATTGAGAGATAATGAGTTTT+AGG | + | chr1_4:17750253-17750272 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_4:17750266-17750285 | Msa0153830:CDS | 25.0% |
| ! | CAATTAATTCCCTTAATTGA+AGG | + | chr1_4:17750278-17750297 | None:intergenic | 25.0% |
| !! | AGAGATTGATATATTTTACC+TGG | + | chr1_4:17750338-17750357 | None:intergenic | 25.0% |
| ! | TACAATGCATAAAATATGCA+AGG | - | chr1_4:17750532-17750551 | Msa0153830:intron | 25.0% |
| !!! | TCATACTTTTTTATTTGTGG+TGG | + | chr1_4:17750584-17750603 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_4:17750640-17750659 | None:intergenic | 25.0% |
| ! | GAAAAGTAATGTGAAAGTAA+AGG | + | chr1_4:17750640-17750659 | None:intergenic | 25.0% |
| ! | ACAAACACAACAAAAGTTTA+TGG | + | chr1_4:17751139-17751158 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGTTGTGTTTGT+AGG | - | chr1_4:17751139-17751158 | Msa0153830:intron | 25.0% |
| !!! | AAACTTTTGTTGTGTTTGTA+GGG | - | chr1_4:17751140-17751159 | Msa0153830:intron | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_4:17751444-17751463 | Msa0153830:five_prime_UTR | 25.0% |
| ! | AAAGTTACTTACTAGTAACT+TGG | - | chr1_4:17751657-17751676 | Msa0153830:five_prime_UTR | 25.0% |
| ! | ATGCAAAAAGGATGCAATTT+TGG | - | chr1_4:17750025-17750044 | Msa0153830:three_prime_UTR | 30.0% |
| ! | TGCAAAAAGGATGCAATTTT+GGG | - | chr1_4:17750026-17750045 | Msa0153830:three_prime_UTR | 30.0% |
| ! | TGGAAAAGATTTTTGACATC+AGG | + | chr1_4:17750053-17750072 | None:intergenic | 30.0% |
| TGATACTTGTAACAAAGCAA+TGG | - | chr1_4:17750127-17750146 | Msa0153830:CDS | 30.0% | |
| !!! | AGGATCCTTTTAATTTCTAG+TGG | + | chr1_4:17750164-17750183 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_4:17750265-17750284 | Msa0153830:CDS | 30.0% | |
| ! | TATATTTTACCTGGATGAGA+AGG | + | chr1_4:17750329-17750348 | None:intergenic | 30.0% |
| AAATAAACCAACAATGCCTA+AGG | - | chr1_4:17750950-17750969 | Msa0153830:intron | 30.0% | |
| ! | ATTTATTCCTTAGGCATTGT+TGG | + | chr1_4:17750960-17750979 | None:intergenic | 30.0% |
| AACAATGCCTAAGGAATAAA+TGG | - | chr1_4:17750959-17750978 | Msa0153830:intron | 30.0% | |
| AATTCTATGAAATCGTGGTT+GGG | + | chr1_4:17751115-17751134 | None:intergenic | 30.0% | |
| TAATTCTATGAAATCGTGGT+TGG | + | chr1_4:17751116-17751135 | None:intergenic | 30.0% | |
| ATGGTAATTCTATGAAATCG+TGG | + | chr1_4:17751120-17751139 | None:intergenic | 30.0% | |
| TAGACCAACCTTTAGTAAAA+TGG | + | chr1_4:17751213-17751232 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_4:17751514-17751533 | Msa0153830:five_prime_UTR | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_4:17751519-17751538 | Msa0153830:five_prime_UTR | 30.0% |
| ! | TGGATTTTCCAAATTTCATG+TGG | - | chr1_4:17751582-17751601 | Msa0153830:five_prime_UTR | 30.0% |
| GAGTAAGACAACAATTTCAT+AGG | - | chr1_4:17751721-17751740 | Msa0153830:five_prime_UTR | 30.0% | |
| GTAAGACAACAATTTCATAG+GGG | - | chr1_4:17751723-17751742 | Msa0153830:five_prime_UTR | 30.0% | |
| ! | ATGCAAAAAGGATGCAATTT+TGG | - | chr1_4:17750025-17750044 | Msa0153830:three_prime_UTR | 30.0% |
| ! | TGCAAAAAGGATGCAATTTT+GGG | - | chr1_4:17750026-17750045 | Msa0153830:three_prime_UTR | 30.0% |
| ! | TGGAAAAGATTTTTGACATC+AGG | + | chr1_4:17750053-17750072 | None:intergenic | 30.0% |
| TGATACTTGTAACAAAGCAA+TGG | - | chr1_4:17750127-17750146 | Msa0153830:CDS | 30.0% | |
| !!! | AGGATCCTTTTAATTTCTAG+TGG | + | chr1_4:17750164-17750183 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_4:17750265-17750284 | Msa0153830:CDS | 30.0% | |
| ! | TATATTTTACCTGGATGAGA+AGG | + | chr1_4:17750329-17750348 | None:intergenic | 30.0% |
| AAATAAACCAACAATGCCTA+AGG | - | chr1_4:17750950-17750969 | Msa0153830:intron | 30.0% | |
| ! | ATTTATTCCTTAGGCATTGT+TGG | + | chr1_4:17750960-17750979 | None:intergenic | 30.0% |
| AACAATGCCTAAGGAATAAA+TGG | - | chr1_4:17750959-17750978 | Msa0153830:intron | 30.0% | |
| AATTCTATGAAATCGTGGTT+GGG | + | chr1_4:17751115-17751134 | None:intergenic | 30.0% | |
| TAATTCTATGAAATCGTGGT+TGG | + | chr1_4:17751116-17751135 | None:intergenic | 30.0% | |
| ATGGTAATTCTATGAAATCG+TGG | + | chr1_4:17751120-17751139 | None:intergenic | 30.0% | |
| TAGACCAACCTTTAGTAAAA+TGG | + | chr1_4:17751213-17751232 | None:intergenic | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_4:17751514-17751533 | Msa0153830:five_prime_UTR | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_4:17751519-17751538 | Msa0153830:five_prime_UTR | 30.0% |
| ! | TGGATTTTCCAAATTTCATG+TGG | - | chr1_4:17751582-17751601 | Msa0153830:five_prime_UTR | 30.0% |
| CTGGTCCACTAGAAATTAAA+AGG | - | chr1_4:17750156-17750175 | Msa0153830:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTG+TGG | - | chr1_4:17750537-17750556 | Msa0153830:intron | 35.0% | |
| ATAAAATATGCAAGGTGTGG+TGG | - | chr1_4:17750540-17750559 | Msa0153830:intron | 35.0% | |
| !!! | TTTTTTATTTGTGGTGGCTG+GGG | + | chr1_4:17750578-17750597 | None:intergenic | 35.0% |
| !!! | CTTTTTTATTTGTGGTGGCT+GGG | + | chr1_4:17750579-17750598 | None:intergenic | 35.0% |
| !!! | ACTTTTTTATTTGTGGTGGC+TGG | + | chr1_4:17750580-17750599 | None:intergenic | 35.0% |
| CCAAAAAACCTACTTGTGAT+CGG | + | chr1_4:17751080-17751099 | None:intergenic | 35.0% | |
| !! | ATGTTTGAAAGTGTTCCAAC+TGG | - | chr1_4:17751182-17751201 | Msa0153830:intron | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | - | chr1_4:17751202-17751221 | Msa0153830:intron | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | - | chr1_4:17751206-17751225 | Msa0153830:intron | 35.0% |
| TTCAGCTTGTATGTCATAAC+TGG | - | chr1_4:17751350-17751369 | Msa0153830:intron | 35.0% | |
| TCAGCTTGTATGTCATAACT+GGG | - | chr1_4:17751351-17751370 | Msa0153830:intron | 35.0% | |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_4:17751409-17751428 | Msa0153830:intron | 35.0% | |
| AGCTTTACCAAAACATGGAA+AGG | - | chr1_4:17751414-17751433 | Msa0153830:intron | 35.0% | |
| ! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_4:17751424-17751443 | None:intergenic | 35.0% |
| ! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_4:17751426-17751445 | Msa0153830:exon | 35.0% |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_4:17751472-17751491 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_4:17751477-17751496 | None:intergenic | 35.0% | |
| CTGGTCCACTAGAAATTAAA+AGG | - | chr1_4:17750156-17750175 | Msa0153830:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTG+TGG | - | chr1_4:17750537-17750556 | Msa0153830:intron | 35.0% | |
| ATAAAATATGCAAGGTGTGG+TGG | - | chr1_4:17750540-17750559 | Msa0153830:intron | 35.0% | |
| !!! | TTTTTTATTTGTGGTGGCTG+GGG | + | chr1_4:17750578-17750597 | None:intergenic | 35.0% |
| !!! | CTTTTTTATTTGTGGTGGCT+GGG | + | chr1_4:17750579-17750598 | None:intergenic | 35.0% |
| !!! | ACTTTTTTATTTGTGGTGGC+TGG | + | chr1_4:17750580-17750599 | None:intergenic | 35.0% |
| CCAAAAAACCTACTTGTGAT+CGG | + | chr1_4:17751080-17751099 | None:intergenic | 35.0% | |
| !! | ATGTTTGAAAGTGTTCCAAC+TGG | - | chr1_4:17751182-17751201 | Msa0153830:intron | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | - | chr1_4:17751202-17751221 | Msa0153830:intron | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | - | chr1_4:17751206-17751225 | Msa0153830:intron | 35.0% |
| TTCAGCTTGTATGTCATAAC+TGG | - | chr1_4:17751350-17751369 | Msa0153830:intron | 35.0% | |
| TCAGCTTGTATGTCATAACT+GGG | - | chr1_4:17751351-17751370 | Msa0153830:intron | 35.0% | |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_4:17751409-17751428 | Msa0153830:intron | 35.0% | |
| AGCTTTACCAAAACATGGAA+AGG | - | chr1_4:17751414-17751433 | Msa0153830:intron | 35.0% | |
| ! | ACAATCACCTTTCCATGTTT+TGG | + | chr1_4:17751424-17751443 | None:intergenic | 35.0% |
| ! | ACATGGAAAGGTGATTGTTT+TGG | - | chr1_4:17751426-17751445 | Msa0153830:exon | 35.0% |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_4:17751472-17751491 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_4:17751477-17751496 | None:intergenic | 35.0% | |
| GTGATGTCCCATTGATACTT+TGG | + | chr1_4:17750073-17750092 | None:intergenic | 40.0% | |
| AACAAAGCAATGGCTCATTC+TGG | - | chr1_4:17750137-17750156 | Msa0153830:CDS | 40.0% | |
| ATTTGAAGGAGTCTCAACGT+TGG | - | chr1_4:17750199-17750218 | Msa0153830:CDS | 40.0% | |
| ! | GGTGCATTTTGAACAACTTG+TGG | + | chr1_4:17750308-17750327 | None:intergenic | 40.0% |
| AATCTTCACCGATCACAAGT+AGG | - | chr1_4:17751069-17751088 | Msa0153830:intron | 40.0% | |
| !!! | CCGATCACAAGTAGGTTTTT+TGG | - | chr1_4:17751077-17751096 | Msa0153830:intron | 40.0% |
| !! | TTTTGTTGTGTTTGTAGGGC+TGG | - | chr1_4:17751144-17751163 | Msa0153830:intron | 40.0% |
| AGTAAAATGGCATCACCAGT+TGG | + | chr1_4:17751200-17751219 | None:intergenic | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_4:17751478-17751497 | None:intergenic | 40.0% | |
| GAGAACTTATGTAAGAGAGC+TGG | - | chr1_4:17751562-17751581 | Msa0153830:five_prime_UTR | 40.0% | |
| ACTGCAAGCCACATGAAATT+TGG | + | chr1_4:17751593-17751612 | None:intergenic | 40.0% | |
| AAATTCCATCACTCCAGACA+AGG | + | chr1_4:17751626-17751645 | None:intergenic | 40.0% | |
| GTGATGTCCCATTGATACTT+TGG | + | chr1_4:17750073-17750092 | None:intergenic | 40.0% | |
| AACAAAGCAATGGCTCATTC+TGG | - | chr1_4:17750137-17750156 | Msa0153830:CDS | 40.0% | |
| ATTTGAAGGAGTCTCAACGT+TGG | - | chr1_4:17750199-17750218 | Msa0153830:CDS | 40.0% | |
| ! | GGTGCATTTTGAACAACTTG+TGG | + | chr1_4:17750308-17750327 | None:intergenic | 40.0% |
| AATCTTCACCGATCACAAGT+AGG | - | chr1_4:17751069-17751088 | Msa0153830:intron | 40.0% | |
| !!! | CCGATCACAAGTAGGTTTTT+TGG | - | chr1_4:17751077-17751096 | Msa0153830:intron | 40.0% |
| !! | TTTTGTTGTGTTTGTAGGGC+TGG | - | chr1_4:17751144-17751163 | Msa0153830:intron | 40.0% |
| AGTAAAATGGCATCACCAGT+TGG | + | chr1_4:17751200-17751219 | None:intergenic | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_4:17751478-17751497 | None:intergenic | 40.0% | |
| GAGAACTTATGTAAGAGAGC+TGG | - | chr1_4:17751562-17751581 | Msa0153830:five_prime_UTR | 40.0% | |
| ACTGCAAGCCACATGAAATT+TGG | + | chr1_4:17751593-17751612 | None:intergenic | 40.0% | |
| AAATTCCATCACTCCAGACA+AGG | + | chr1_4:17751626-17751645 | None:intergenic | 40.0% | |
| ! | GTCTCAACGTTGGTTGATGT+TGG | - | chr1_4:17750209-17750228 | Msa0153830:CDS | 45.0% |
| ! | TCAACGTTGGTTGATGTTGG+AGG | - | chr1_4:17750212-17750231 | Msa0153830:CDS | 45.0% |
| CAAAATGCACCTTCTCATCC+AGG | - | chr1_4:17750317-17750336 | Msa0153830:CDS | 45.0% | |
| ! | GTCTCAACGTTGGTTGATGT+TGG | - | chr1_4:17750209-17750228 | Msa0153830:CDS | 45.0% |
| ! | TCAACGTTGGTTGATGTTGG+AGG | - | chr1_4:17750212-17750231 | Msa0153830:CDS | 45.0% |
| CAAAATGCACCTTCTCATCC+AGG | - | chr1_4:17750317-17750336 | Msa0153830:CDS | 45.0% | |
| !!! | ATAATTTAAAATATAGTAAA+GGG | + | chr1_4:17750474-17750493 | None:intergenic | 5.0% |
| !! | AATAAATAATTTAAACAATT+TGG | - | chr1_4:17751248-17751267 | Msa0153830:intron | 5.0% |
| !! | ATTAATAAAGAAAAATAAAA+TGG | + | chr1_4:17751330-17751349 | None:intergenic | 5.0% |
| !!! | ATAATTTAAAATATAGTAAA+GGG | + | chr1_4:17750474-17750493 | None:intergenic | 5.0% |
| !! | AATAAATAATTTAAACAATT+TGG | - | chr1_4:17751248-17751267 | Msa0153830:intron | 5.0% |
| !! | ATTAATAAAGAAAAATAAAA+TGG | + | chr1_4:17751330-17751349 | None:intergenic | 5.0% |
| ! | ACGTTGGTTGATGTTGGAGG+TGG | - | chr1_4:17750215-17750234 | Msa0153830:CDS | 50.0% |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_4:17750221-17750240 | Msa0153830:CDS | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | - | chr1_4:17750505-17750524 | Msa0153830:intron | 50.0% | |
| AATATGCAAGGTGTGGTGGC+TGG | - | chr1_4:17750544-17750563 | Msa0153830:intron | 50.0% | |
| ATATGCAAGGTGTGGTGGCT+GGG | - | chr1_4:17750545-17750564 | Msa0153830:intron | 50.0% | |
| ! | TGTTTGTAGGGCTGGCATGT+TGG | - | chr1_4:17751152-17751171 | Msa0153830:intron | 50.0% |
| ! | ACGTTGGTTGATGTTGGAGG+TGG | - | chr1_4:17750215-17750234 | Msa0153830:CDS | 50.0% |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_4:17750221-17750240 | Msa0153830:CDS | 50.0% | |
| CATCGTGAGCTTAGCTCAGT+TGG | - | chr1_4:17750505-17750524 | Msa0153830:intron | 50.0% | |
| AATATGCAAGGTGTGGTGGC+TGG | - | chr1_4:17750544-17750563 | Msa0153830:intron | 50.0% | |
| ATATGCAAGGTGTGGTGGCT+GGG | - | chr1_4:17750545-17750564 | Msa0153830:intron | 50.0% | |
| ! | TGTTTGTAGGGCTGGCATGT+TGG | - | chr1_4:17751152-17751171 | Msa0153830:intron | 50.0% |
| TATGCAAGGTGTGGTGGCTG+GGG | - | chr1_4:17750546-17750565 | Msa0153830:intron | 55.0% | |
| ! | TTGTAGGGCTGGCATGTTGG+AGG | - | chr1_4:17751155-17751174 | Msa0153830:intron | 55.0% |
| TTGCTAGGGTTTGGCACCTC+TGG | + | chr1_4:17751463-17751482 | None:intergenic | 55.0% | |
| ! | AGTGTTGCCTCAGCCTTGTC+TGG | - | chr1_4:17751610-17751629 | Msa0153830:five_prime_UTR | 55.0% |
| CATCACTCCAGACAAGGCTG+AGG | + | chr1_4:17751620-17751639 | None:intergenic | 55.0% | |
| ! | CTCAGCCTTGTCTGGAGTGA+TGG | - | chr1_4:17751618-17751637 | Msa0153830:five_prime_UTR | 55.0% |
| TATGCAAGGTGTGGTGGCTG+GGG | - | chr1_4:17750546-17750565 | Msa0153830:intron | 55.0% | |
| ! | TTGTAGGGCTGGCATGTTGG+AGG | - | chr1_4:17751155-17751174 | Msa0153830:intron | 55.0% |
| TTGCTAGGGTTTGGCACCTC+TGG | + | chr1_4:17751463-17751482 | None:intergenic | 55.0% | |
| ! | AGTGTTGCCTCAGCCTTGTC+TGG | - | chr1_4:17751610-17751629 | Msa0153830:five_prime_UTR | 55.0% |
| CATCACTCCAGACAAGGCTG+AGG | + | chr1_4:17751620-17751639 | None:intergenic | 55.0% | |
| ! | CTCAGCCTTGTCTGGAGTGA+TGG | - | chr1_4:17751618-17751637 | Msa0153830:five_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 17750019 | 17751742 | 17750019 | ID=Msa0153830;Name=Msa0153830 |
| chr1_4 | mRNA | 17750019 | 17751742 | 17750019 | ID=Msa0153830-mRNA-1;Parent=Msa0153830;Name=Msa0153830-mRNA-1;_AED=0.23;_eAED=0.23;_QI=302|0|1|1|0|1|2|88|105 |
| chr1_4 | exon | 17750019 | 17750406 | 17750019 | ID=Msa0153830-mRNA-1:exon:6686;Parent=Msa0153830-mRNA-1 |
| chr1_4 | exon | 17751423 | 17751742 | 17751423 | ID=Msa0153830-mRNA-1:exon:6685;Parent=Msa0153830-mRNA-1 |
| chr1_4 | five_prime_UTR | 17751441 | 17751742 | 17751441 | ID=Msa0153830-mRNA-1:five_prime_utr;Parent=Msa0153830-mRNA-1 |
| chr1_4 | CDS | 17751423 | 17751440 | 17751423 | ID=Msa0153830-mRNA-1:cds;Parent=Msa0153830-mRNA-1 |
| chr1_4 | CDS | 17750107 | 17750406 | 17750107 | ID=Msa0153830-mRNA-1:cds;Parent=Msa0153830-mRNA-1 |
| chr1_4 | three_prime_UTR | 17750019 | 17750106 | 17750019 | ID=Msa0153830-mRNA-1:three_prime_utr;Parent=Msa0153830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
