Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108710 | XP_013465691.1 | 98.204 | 334 | 6 | 0 | 3 | 336 | 9 | 342 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108710 | sp|Q6NMC6|ABIL3_ARATH | 62.691 | 327 | 112 | 5 | 14 | 336 | 1 | 321 | 1.38e-138 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108710 | A0A072VD45 | 98.204 | 334 | 6 | 0 | 3 | 336 | 9 | 342 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0108710 | 0.801121 | 1.045571e-48 | -8.615850e-47 |
| Msa0108710 | Msa0146650 | 0.811762 | 5.954237e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108710 | MtrunA17_Chr1g0146911 | 98.762 | 323 | 4 | 0 | 14 | 336 | 1 | 323 | 0.0 | 661 |
| Msa0108710 | MtrunA17_Chr3g0127011 | 74.924 | 327 | 77 | 3 | 14 | 336 | 1 | 326 | 7.79e-178 | 495 |
| Msa0108710 | MtrunA17_Chr8g0348041 | 52.672 | 131 | 62 | 0 | 26 | 156 | 15 | 145 | 1.28e-41 | 147 |
| Msa0108710 | MtrunA17_Chr7g0275191 | 50.000 | 134 | 65 | 1 | 31 | 162 | 2 | 135 | 3.51e-38 | 137 |
| Msa0108710 | MtrunA17_Chr6g0485851 | 28.926 | 121 | 85 | 1 | 34 | 154 | 19 | 138 | 1.02e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108710 | AT5G24310.1 | 62.691 | 327 | 112 | 5 | 14 | 336 | 1 | 321 | 1.41e-139 | 398 |
| Msa0108710 | AT3G49290.1 | 63.323 | 319 | 106 | 6 | 21 | 336 | 2 | 312 | 5.03e-138 | 394 |
| Msa0108710 | AT3G49290.2 | 63.323 | 319 | 106 | 6 | 21 | 336 | 2 | 312 | 5.03e-138 | 394 |
| Msa0108710 | AT5G24310.4 | 63.125 | 320 | 108 | 5 | 21 | 336 | 2 | 315 | 1.31e-137 | 393 |
| Msa0108710 | AT5G24310.3 | 60.245 | 327 | 106 | 6 | 14 | 336 | 1 | 307 | 2.64e-128 | 369 |
| Msa0108710 | AT5G24310.2 | 66.055 | 218 | 72 | 2 | 21 | 236 | 2 | 219 | 1.05e-97 | 289 |
| Msa0108710 | AT5G42030.1 | 37.748 | 302 | 148 | 5 | 26 | 324 | 14 | 278 | 2.05e-58 | 190 |
| Msa0108710 | AT5G42030.2 | 44.017 | 234 | 107 | 3 | 26 | 256 | 14 | 226 | 3.74e-55 | 183 |
| Msa0108710 | AT5G42030.3 | 46.023 | 176 | 83 | 1 | 26 | 201 | 14 | 177 | 1.50e-45 | 154 |
| Msa0108710 | AT2G46225.3 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 1.77e-38 | 138 |
| Msa0108710 | AT2G46225.1 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 2.37e-38 | 138 |
| Msa0108710 | AT2G46225.2 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 2.75e-38 | 139 |
| Msa0108710 | AT5G42030.4 | 33.071 | 254 | 130 | 5 | 74 | 324 | 15 | 231 | 7.30e-35 | 127 |
Find 77 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAAACTTCATCATAAT+TGG | 0.201171 | 1_3:+20299349 | None:intergenic |
| ATAAATACTGTGGATCATTT+AGG | 0.221162 | 1_3:-20298998 | Msa0108710:CDS |
| TAACAAGTCACTCACTTTAT+AGG | 0.234312 | 1_3:+20298967 | None:intergenic |
| ATATAACGTTTGTGATGTTT+TGG | 0.268290 | 1_3:+20298505 | None:intergenic |
| CTTATGGTTGCAATATATAA+AGG | 0.284749 | 1_3:+20299967 | None:intergenic |
| ACAATAGTAGTTGAAGAAAA+TGG | 0.289751 | 1_3:+20297209 | None:intergenic |
| ATCTTCCCCATGAATGAAAA+AGG | 0.307980 | 1_3:+20299401 | None:intergenic |
| ACTCTTTCCTTGCATTCTAT+TGG | 0.329751 | 1_3:+20297359 | None:intergenic |
| GTGGATCTGTTGCTTGAGTT+TGG | 0.358344 | 1_3:+20297723 | None:intergenic |
| GTAGTTGATCTACCAGTCTT+TGG | 0.366290 | 1_3:+20297747 | None:intergenic |
| ACCCTTACTCTTGCATTTGA+AGG | 0.367421 | 1_3:+20297693 | None:intergenic |
| AAGATGATTGGCATCACTTC+AGG | 0.368367 | 1_3:-20298274 | Msa0108710:CDS |
| CGACACTTCAAAGGTGTGTT+TGG | 0.368611 | 1_3:-20297281 | Msa0108710:three_prime_UTR |
| TCCTTTCTTGCAGTATCCTT+CGG | 0.371593 | 1_3:-20297562 | Msa0108710:intron |
| GCTCTTTGATGATAGTCTAA+TGG | 0.375978 | 1_3:-20299315 | Msa0108710:intron |
| AGAAGACGTTTACTCTTACT+AGG | 0.379538 | 1_3:+20297471 | None:intergenic |
| GTCCTTCAAATGCAAGAGTA+AGG | 0.381834 | 1_3:-20297695 | Msa0108710:CDS |
| CGTCTTCTTAAGTCCCTACT+TGG | 0.390626 | 1_3:-20297456 | Msa0108710:CDS |
| AGTATTTATAAGAGCTTTGA+CGG | 0.399045 | 1_3:+20299012 | None:intergenic |
| TCAACAAAATCAAAATATAT+AGG | 0.400778 | 1_3:-20298314 | Msa0108710:CDS |
| GAAGATTTACACAAGATCAT+AGG | 0.406687 | 1_3:-20300152 | Msa0108710:five_prime_UTR |
| CAGATTGGTTGAAACATTGA+AGG | 0.425974 | 1_3:-20299041 | Msa0108710:CDS |
| TGCAAGCTATTCAATCAAAT+AGG | 0.440167 | 1_3:+20297125 | None:intergenic |
| TTCTTAAGTCCCTACTTGGC+AGG | 0.453785 | 1_3:-20297452 | Msa0108710:CDS |
| GAAGACGTTTACTCTTACTA+GGG | 0.455154 | 1_3:+20297472 | None:intergenic |
| GTTTGATTTCTTGTCGGGCA+TGG | 0.462646 | 1_3:-20300116 | Msa0108710:five_prime_UTR |
| AATGATCCGGTACGCGAAAG+TGG | 0.466249 | 1_3:+20297789 | None:intergenic |
| GAGTGACTTGTTAGATGAAA+AGG | 0.466681 | 1_3:-20298957 | Msa0108710:CDS |
| GCCAATCATCTTCATCATCT+AGG | 0.468564 | 1_3:+20298285 | None:intergenic |
| ACGTTTATCATGTATCGAAC+AGG | 0.471944 | 1_3:-20298909 | Msa0108710:intron |
| GTGGTCAGCAGCTGCACTTA+TGG | 0.472814 | 1_3:+20299951 | None:intergenic |
| TCTTTACAACCTCAGAGAGT+TGG | 0.476414 | 1_3:-20297986 | Msa0108710:CDS |
| AGGTTTCCACTTTCGCGTAC+CGG | 0.482355 | 1_3:-20297795 | Msa0108710:CDS |
| TGCATTTGAAGGACTTGTGG+TGG | 0.485150 | 1_3:+20297704 | None:intergenic |
| TTGGAAGCCATTCGAGGTAG+AGG | 0.487405 | 1_3:+20299368 | None:intergenic |
| TAGACTTGCGCCTGCCAAGT+AGG | 0.489257 | 1_3:+20297442 | None:intergenic |
| TTCAATCAAATAGGCAAAGC+AGG | 0.495672 | 1_3:+20297134 | None:intergenic |
| TCTACCAGTCTTTGGTGTTG+TGG | 0.505674 | 1_3:+20297755 | None:intergenic |
| TTACTCATAGTTCTAAATTG+TGG | 0.507630 | 1_3:+20299932 | None:intergenic |
| GCTGATTTGCGCGGCTCCGA+AGG | 0.523701 | 1_3:+20297546 | None:intergenic |
| TGACACGTTATACACATACT+TGG | 0.525305 | 1_3:-20297412 | Msa0108710:CDS |
| TGTTGAGTTGGTACCATGCA+AGG | 0.528628 | 1_3:+20298331 | None:intergenic |
| ACTCTCTGAGGTTGTAAAGA+AGG | 0.529000 | 1_3:+20297989 | None:intergenic |
| AGACTTGCGCCTGCCAAGTA+GGG | 0.532116 | 1_3:+20297443 | None:intergenic |
| TCTTGCATTTGAAGGACTTG+TGG | 0.532230 | 1_3:+20297701 | None:intergenic |
| TTCATTCACTTCACCCAACA+TGG | 0.537497 | 1_3:-20297957 | Msa0108710:CDS |
| ACCTAGATGATGAAGATGAT+TGG | 0.546777 | 1_3:-20298286 | Msa0108710:CDS |
| TGGCAGGCGCAAGTCTAAGA+AGG | 0.554287 | 1_3:-20297436 | Msa0108710:CDS |
| TCAGTTGGGGAGACCTTGCA+TGG | 0.559628 | 1_3:-20298344 | Msa0108710:intron |
| TCATAATTGGAAGCCATTCG+AGG | 0.561383 | 1_3:+20299362 | None:intergenic |
| GTTTACTCTTACTAGGGTGT+TGG | 0.563511 | 1_3:+20297478 | None:intergenic |
| ACACTTGCCAATAGAATGCA+AGG | 0.571373 | 1_3:-20297366 | Msa0108710:three_prime_UTR |
| GGATCTACTTGACAATGATC+CGG | 0.571708 | 1_3:+20297776 | None:intergenic |
| CCTCATGATCCATAAAACCT+TGG | 0.572903 | 1_3:+20298560 | None:intergenic |
| TAGAGAATAAAGACATGCCA+AGG | 0.576912 | 1_3:-20298577 | Msa0108710:CDS |
| ATGAAGCACCGACACTTCAA+AGG | 0.578484 | 1_3:-20297290 | Msa0108710:three_prime_UTR |
| ACAAAATGTGGCTGCAACTG+CGG | 0.579244 | 1_3:-20300008 | Msa0108710:five_prime_UTR |
| TAGACTATCATCAAAGAGCA+AGG | 0.589354 | 1_3:+20299319 | None:intergenic |
| CGCATTGAAGCTGATTTGCG+CGG | 0.592705 | 1_3:+20297537 | None:intergenic |
| AGATCCACAACACCAAAGAC+TGG | 0.593009 | 1_3:-20297759 | Msa0108710:CDS |
| ATTTAGTACAACATGTGTGT+TGG | 0.593510 | 1_3:-20300176 | Msa0108710:five_prime_UTR |
| GATTGGCATCACTTCAGGAA+TGG | 0.593721 | 1_3:-20298269 | Msa0108710:intron |
| CAAACACACCTTTGAAGTGT+CGG | 0.595147 | 1_3:+20297282 | None:intergenic |
| AACACAACCTCTACCTCGAA+TGG | 0.597696 | 1_3:-20299375 | Msa0108710:CDS |
| AGCGGACAGTTTCGCCACAC+AGG | 0.598006 | 1_3:-20297815 | Msa0108710:CDS |
| TGAGGTTGTAAAGAAGGTGA+TGG | 0.601446 | 1_3:+20297995 | None:intergenic |
| TCCTTCAAATGCAAGAGTAA+GGG | 0.605270 | 1_3:-20297694 | Msa0108710:intron |
| CAAAGCTCTTATAAATACTG+TGG | 0.609357 | 1_3:-20299008 | Msa0108710:CDS |
| TTCGATACTGAAACAAAATG+TGG | 0.614629 | 1_3:-20300020 | Msa0108710:five_prime_UTR |
| ATGTATGTGAAATAGAGAAG+CGG | 0.632958 | 1_3:-20297833 | Msa0108710:intron |
| AAACACCAACGTCTACCTCA+AGG | 0.635664 | 1_3:-20298124 | Msa0108710:intron |
| GATGAGAAAATAAGAAACAG+AGG | 0.637686 | 1_3:+20297102 | None:intergenic |
| CGCGAAAGTGGAAACCTGTG+TGG | 0.665252 | 1_3:+20297801 | None:intergenic |
| TGATACGACATCAACACATG+TGG | 0.672406 | 1_3:-20297248 | Msa0108710:three_prime_UTR |
| AATCATCTTCATCATCTAGG+TGG | 0.697533 | 1_3:+20298288 | None:intergenic |
| TTGTACCTTGAGGTAGACGT+TGG | 0.705887 | 1_3:+20298119 | None:intergenic |
| ATAGTTCTAAATTACAAACG+CGG | 0.756645 | 1_3:-20300056 | Msa0108710:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCTCAAAAATTTAA+GGG | + | chr1_3:20297913-20297932 | None:intergenic | 10.0% |
| !! | TAAAAATTCTCAAAAATTTA+AGG | + | chr1_3:20297914-20297933 | None:intergenic | 10.0% |
| !!! | CTATATCATTTTAATGAAAA+AGG | + | chr1_3:20297108-20297127 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAACTCTTAAG+AGG | + | chr1_3:20297450-20297469 | None:intergenic | 15.0% |
| !! | TATTATCACAAATCAAAAAA+GGG | + | chr1_3:20297634-20297653 | None:intergenic | 15.0% |
| !! | ATATTATCACAAATCAAAAA+AGG | + | chr1_3:20297635-20297654 | None:intergenic | 15.0% |
| !!! | AAAAATAAAGAAGAGTATAA+AGG | + | chr1_3:20298093-20298112 | None:intergenic | 15.0% |
| !! | ATGAGTAATGTTAATATAAT+GGG | + | chr1_3:20298774-20298793 | None:intergenic | 15.0% |
| !! | TCAACAAAATCAAAATATAT+AGG | - | chr1_3:20298866-20298885 | Msa0108710:intron | 15.0% |
| !!! | TTGTATTTTCTTTATCATAG+TGG | - | chr1_3:20297303-20297322 | Msa0108710:three_prime_UTR | 20.0% |
| !!! | TATTTTAGAAGACAGATAAA+GGG | + | chr1_3:20297354-20297373 | None:intergenic | 20.0% |
| !!! | TTATTTTAGAAGACAGATAA+AGG | + | chr1_3:20297355-20297374 | None:intergenic | 20.0% |
| !!! | TTATCTGTCTTCTAAAATAA+TGG | - | chr1_3:20297355-20297374 | Msa0108710:three_prime_UTR | 20.0% |
| !!! | TAAATTTTGATTTGTGATAG+AGG | - | chr1_3:20297483-20297502 | Msa0108710:CDS | 20.0% |
| !!! | AAATTTTGATTTGTGATAGA+GGG | - | chr1_3:20297484-20297503 | Msa0108710:CDS | 20.0% |
| !! | TCAATGTTATTGATAAAAGT+AGG | - | chr1_3:20297734-20297753 | Msa0108710:CDS | 20.0% |
| !!! | AATTAACTCACATTTGTTTT+TGG | + | chr1_3:20298053-20298072 | None:intergenic | 20.0% |
| !!! | TTTGTATTTTATTTGCAGAT+TGG | - | chr1_3:20298124-20298143 | Msa0108710:intron | 20.0% |
| !! | GCTTATAACTTAATTGAAAA+CGG | + | chr1_3:20298412-20298431 | None:intergenic | 20.0% |
| !! | CATGAGTAATGTTAATATAA+TGG | + | chr1_3:20298775-20298794 | None:intergenic | 20.0% |
| !!! | ATATTTTGATTTTGTTGAGT+TGG | + | chr1_3:20298864-20298883 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTCCACTTTTAT+AGG | - | chr1_3:20298957-20298976 | Msa0108710:CDS | 20.0% |
| !! | AATCATGTTGTTATAGTAAA+GGG | - | chr1_3:20299156-20299175 | Msa0108710:CDS | 20.0% |
| !!! | GTAAATATTTTATTCTGAAC+TGG | - | chr1_3:20299310-20299329 | Msa0108710:intron | 20.0% |
| !!! | TCTTTTGTTTGATTTCTTGT+CGG | - | chr1_3:20297058-20297077 | Msa0108710:three_prime_UTR | 25.0% |
| !!! | ATAGTTCTAAATTACAAACG+CGG | - | chr1_3:20297124-20297143 | Msa0108710:three_prime_UTR | 25.0% |
| !!! | GCAATATATAAAGGTTTTAG+AGG | + | chr1_3:20297207-20297226 | None:intergenic | 25.0% |
| ! | CTTATGGTTGCAATATATAA+AGG | + | chr1_3:20297216-20297235 | None:intergenic | 25.0% |
| !!! | TTACTCATAGTTCTAAATTG+TGG | + | chr1_3:20297251-20297270 | None:intergenic | 25.0% |
| !! | GGTTGTTGTTGTTATTAAAT+AGG | - | chr1_3:20297384-20297403 | Msa0108710:exon | 25.0% |
| !! | GCTTTTCATTTTGAACTATT+TGG | - | chr1_3:20297423-20297442 | Msa0108710:CDS | 25.0% |
| !!! | AATTTTGATTTGTGATAGAG+GGG | - | chr1_3:20297485-20297504 | Msa0108710:CDS | 25.0% |
| ! | AAAAGTAAACAAGATACAGT+TGG | + | chr1_3:20297680-20297699 | None:intergenic | 25.0% |
| ! | CATGAAAACTTCATCATAAT+TGG | + | chr1_3:20297834-20297853 | None:intergenic | 25.0% |
| ! | AAATTTAAGGGATGAATTAC+TGG | + | chr1_3:20297901-20297920 | None:intergenic | 25.0% |
| !!! | CTTTTTTCATCTACATTTCT+AGG | - | chr1_3:20297957-20297976 | Msa0108710:CDS | 25.0% |
| !! | AGTATTTATAAGAGCTTTGA+CGG | + | chr1_3:20298171-20298190 | None:intergenic | 25.0% |
| ! | ATAAATACTGTGGATCATTT+AGG | - | chr1_3:20298182-20298201 | Msa0108710:intron | 25.0% |
| !!! | TTTATTTCCATTAGCTTTTC+GGG | + | chr1_3:20298451-20298470 | None:intergenic | 25.0% |
| !!! | GTTTATTTCCATTAGCTTTT+CGG | + | chr1_3:20298452-20298471 | None:intergenic | 25.0% |
| ! | ATAAACTGAAAAACAGCTTA+TGG | - | chr1_3:20298466-20298485 | Msa0108710:intron | 25.0% |
| ! | GAAAGTAATGTGAAAAACTT+TGG | - | chr1_3:20298510-20298529 | Msa0108710:CDS | 25.0% |
| !! | AGCATAATTTTTCCATAATG+TGG | - | chr1_3:20298575-20298594 | Msa0108710:CDS | 25.0% |
| !! | ATATAACGTTTGTGATGTTT+TGG | + | chr1_3:20298678-20298697 | None:intergenic | 25.0% |
| ! | AATGTATTTATAAACTTGCC+TGG | + | chr1_3:20298705-20298724 | None:intergenic | 25.0% |
| ! | AGAATTTCAAAATAGAGTTG+AGG | + | chr1_3:20298730-20298749 | None:intergenic | 25.0% |
| ! | TCAATTTCACATATTCAGTT+GGG | - | chr1_3:20298822-20298841 | Msa0108710:intron | 25.0% |
| ! | AAGATTGTATCCTATAAAAG+TGG | + | chr1_3:20298970-20298989 | None:intergenic | 25.0% |
| ! | CAATCATGTTGTTATAGTAA+AGG | - | chr1_3:20299155-20299174 | Msa0108710:CDS | 25.0% |
| !!! | TATAGTACCCAAATCTTTTT+TGG | + | chr1_3:20299249-20299268 | None:intergenic | 25.0% |
| ! | ACATTAAAACGTGAATATTG+TGG | - | chr1_3:20299568-20299587 | Msa0108710:intron | 25.0% |
| ! | AAAGAACAAAAACTACGTAA+AGG | - | chr1_3:20299850-20299869 | Msa0108710:intron | 25.0% |
| ! | AAGAACAAAAACTACGTAAA+GGG | - | chr1_3:20299851-20299870 | Msa0108710:intron | 25.0% |
| ! | ACAATAGTAGTTGAAGAAAA+TGG | + | chr1_3:20299974-20299993 | None:intergenic | 25.0% |
| ATTTAGTACAACATGTGTGT+TGG | - | chr1_3:20297004-20297023 | Msa0108710:three_prime_UTR | 30.0% | |
| GAAGATTTACACAAGATCAT+AGG | - | chr1_3:20297028-20297047 | Msa0108710:three_prime_UTR | 30.0% | |
| !! | CTTTTGTTTGATTTCTTGTC+GGG | - | chr1_3:20297059-20297078 | Msa0108710:three_prime_UTR | 30.0% |
| TTCGATACTGAAACAAAATG+TGG | - | chr1_3:20297160-20297179 | Msa0108710:three_prime_UTR | 30.0% | |
| !! | CTTCTAAAATAATGGTTGAC+TGG | - | chr1_3:20297363-20297382 | Msa0108710:three_prime_UTR | 30.0% |
| !!! | CATTTGTTTTTGGTCATCAT+TGG | + | chr1_3:20298043-20298062 | None:intergenic | 30.0% |
| CAAAGCTCTTATAAATACTG+TGG | - | chr1_3:20298172-20298191 | Msa0108710:intron | 30.0% | |
| TAACAAGTCACTCACTTTAT+AGG | + | chr1_3:20298216-20298235 | None:intergenic | 30.0% | |
| TACTTTCTTAAGTGCCTTAT+TGG | + | chr1_3:20298497-20298516 | None:intergenic | 30.0% | |
| AACTTTGGTGAATTTCCATT+TGG | - | chr1_3:20298525-20298544 | Msa0108710:CDS | 30.0% | |
| ! | AAACGTAACAGTTTTCCAAA+TGG | + | chr1_3:20298543-20298562 | None:intergenic | 30.0% |
| TTCTCTAATGTACCACATTA+TGG | + | chr1_3:20298590-20298609 | None:intergenic | 30.0% | |
| CTCAATTTCACATATTCAGT+TGG | - | chr1_3:20298821-20298840 | Msa0108710:intron | 30.0% | |
| CAATTTCACATATTCAGTTG+GGG | - | chr1_3:20298823-20298842 | Msa0108710:intron | 30.0% | |
| TGTGCAGTTTAATTGAGAAT+TGG | + | chr1_3:20299113-20299132 | None:intergenic | 30.0% | |
| !!! | AAATCTTTTTTGGCCATGTT+GGG | + | chr1_3:20299239-20299258 | None:intergenic | 30.0% |
| AACATGGCCAAAAAAGATTT+GGG | - | chr1_3:20299239-20299258 | Msa0108710:intron | 30.0% | |
| ATGTATGTGAAATAGAGAAG+CGG | - | chr1_3:20299347-20299366 | Msa0108710:CDS | 30.0% | |
| ! | AAAAACTACGTAAAGGGTTT+TGG | - | chr1_3:20299857-20299876 | Msa0108710:intron | 30.0% |
| ! | AAAACTACGTAAAGGGTTTT+GGG | - | chr1_3:20299858-20299877 | Msa0108710:intron | 30.0% |
| !!! | GTGTCGTTTTAGTGTTATAT+AGG | - | chr1_3:20300014-20300033 | Msa0108710:five_prime_UTR | 30.0% |
| TGCAAGCTATTCAATCAAAT+AGG | + | chr1_3:20300058-20300077 | None:intergenic | 30.0% | |
| GATGAGAAAATAAGAAACAG+AGG | + | chr1_3:20300081-20300100 | None:intergenic | 30.0% | |
| TAGAAGACAGATAAAGGGAA+AGG | + | chr1_3:20297349-20297368 | None:intergenic | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | - | chr1_3:20297556-20297575 | Msa0108710:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | chr1_3:20297560-20297579 | Msa0108710:intron | 35.0% | |
| TGAATGAAAAAGGTGGAAGA+AGG | + | chr1_3:20297772-20297791 | None:intergenic | 35.0% | |
| !! | TCTTCCACCTTTTTCATTCA+TGG | - | chr1_3:20297772-20297791 | Msa0108710:CDS | 35.0% |
| !! | CTTCCACCTTTTTCATTCAT+GGG | - | chr1_3:20297773-20297792 | Msa0108710:CDS | 35.0% |
| !! | TTCCACCTTTTTCATTCATG+GGG | - | chr1_3:20297774-20297793 | Msa0108710:CDS | 35.0% |
| ATCTTCCCCATGAATGAAAA+AGG | + | chr1_3:20297782-20297801 | None:intergenic | 35.0% | |
| TAGACTATCATCAAAGAGCA+AGG | + | chr1_3:20297864-20297883 | None:intergenic | 35.0% | |
| ! | GCTCTTTGATGATAGTCTAA+TGG | - | chr1_3:20297865-20297884 | Msa0108710:intron | 35.0% |
| ! | CAGATTGGTTGAAACATTGA+AGG | - | chr1_3:20298139-20298158 | Msa0108710:CDS | 35.0% |
| !! | GAGTGACTTGTTAGATGAAA+AGG | - | chr1_3:20298223-20298242 | Msa0108710:intron | 35.0% |
| ! | GAAAAGGTCACTGAAGTTTT+TGG | - | chr1_3:20298239-20298258 | Msa0108710:intron | 35.0% |
| ACGTTTATCATGTATCGAAC+AGG | - | chr1_3:20298271-20298290 | Msa0108710:CDS | 35.0% | |
| TAGAGAATAAAGACATGCCA+AGG | - | chr1_3:20298603-20298622 | Msa0108710:intron | 35.0% | |
| ! | AAAGACATGCCAAGGTTTTA+TGG | - | chr1_3:20298611-20298630 | Msa0108710:intron | 35.0% |
| !! | CAAGGTTTTATGGATCATGA+GGG | - | chr1_3:20298621-20298640 | Msa0108710:intron | 35.0% |
| !! | AAGGTTTTATGGATCATGAG+GGG | - | chr1_3:20298622-20298641 | Msa0108710:intron | 35.0% |
| ! | CACAAACGTTATATTTTGCC+AGG | - | chr1_3:20298684-20298703 | Msa0108710:intron | 35.0% |
| AATCATCTTCATCATCTAGG+TGG | + | chr1_3:20298895-20298914 | None:intergenic | 35.0% | |
| ACCTAGATGATGAAGATGAT+TGG | - | chr1_3:20298894-20298913 | Msa0108710:intron | 35.0% | |
| !! | CTGATTTTGTTTGTACCTTG+AGG | + | chr1_3:20299074-20299093 | None:intergenic | 35.0% |
| !!! | CAAATCTTTTTTGGCCATGT+TGG | + | chr1_3:20299240-20299259 | None:intergenic | 35.0% |
| CAACATGGCCAAAAAAGATT+TGG | - | chr1_3:20299238-20299257 | Msa0108710:intron | 35.0% | |
| TCCTTCAAATGCAAGAGTAA+GGG | - | chr1_3:20299486-20299505 | Msa0108710:intron | 35.0% | |
| GAAGACGTTTACTCTTACTA+GGG | + | chr1_3:20299711-20299730 | None:intergenic | 35.0% | |
| AGAAGACGTTTACTCTTACT+AGG | + | chr1_3:20299712-20299731 | None:intergenic | 35.0% | |
| TGACACGTTATACACATACT+TGG | - | chr1_3:20299768-20299787 | Msa0108710:intron | 35.0% | |
| ACTCTTTCCTTGCATTCTAT+TGG | + | chr1_3:20299824-20299843 | None:intergenic | 35.0% | |
| TTCAATCAAATAGGCAAAGC+AGG | + | chr1_3:20300049-20300068 | None:intergenic | 35.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr1_3:20297530-20297549 | Msa0108710:CDS | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | chr1_3:20297559-20297578 | Msa0108710:intron | 40.0% | |
| CAAATCAAAAAAGGGCAACC+CGG | + | chr1_3:20297626-20297645 | None:intergenic | 40.0% | |
| TTCCCCATGAATGAAAAAGG+TGG | + | chr1_3:20297779-20297798 | None:intergenic | 40.0% | |
| TCATAATTGGAAGCCATTCG+AGG | + | chr1_3:20297821-20297840 | None:intergenic | 40.0% | |
| AAGCTATCCCGAAAAGCTAA+TGG | - | chr1_3:20298441-20298460 | Msa0108710:intron | 40.0% | |
| AGCTTATGGACTTGCCAATA+AGG | - | chr1_3:20298480-20298499 | Msa0108710:intron | 40.0% | |
| CCTCATGATCCATAAAACCT+TGG | + | chr1_3:20298623-20298642 | None:intergenic | 40.0% | |
| !! | CCAAGGTTTTATGGATCATG+AGG | - | chr1_3:20298620-20298639 | Msa0108710:intron | 40.0% |
| GCCAATCATCTTCATCATCT+AGG | + | chr1_3:20298898-20298917 | None:intergenic | 40.0% | |
| AAGATGATTGGCATCACTTC+AGG | - | chr1_3:20298906-20298925 | Msa0108710:intron | 40.0% | |
| TGAGGTTGTAAAGAAGGTGA+TGG | + | chr1_3:20299188-20299207 | None:intergenic | 40.0% | |
| !! | ACTCTCTGAGGTTGTAAAGA+AGG | + | chr1_3:20299194-20299213 | None:intergenic | 40.0% |
| TCTTTACAACCTCAGAGAGT+TGG | - | chr1_3:20299194-20299213 | Msa0108710:CDS | 40.0% | |
| TTCATTCACTTCACCCAACA+TGG | - | chr1_3:20299223-20299242 | Msa0108710:intron | 40.0% | |
| GGATCTACTTGACAATGATC+CGG | + | chr1_3:20299407-20299426 | None:intergenic | 40.0% | |
| GTAGTTGATCTACCAGTCTT+TGG | + | chr1_3:20299436-20299455 | None:intergenic | 40.0% | |
| TCTTGCATTTGAAGGACTTG+TGG | + | chr1_3:20299482-20299501 | None:intergenic | 40.0% | |
| GTCCTTCAAATGCAAGAGTA+AGG | - | chr1_3:20299485-20299504 | Msa0108710:intron | 40.0% | |
| ACCCTTACTCTTGCATTTGA+AGG | + | chr1_3:20299490-20299509 | None:intergenic | 40.0% | |
| AATGCAAGAGTAAGGGTAAG+TGG | - | chr1_3:20299493-20299512 | Msa0108710:intron | 40.0% | |
| TCCTTTCTTGCAGTATCCTT+CGG | - | chr1_3:20299618-20299637 | Msa0108710:intron | 40.0% | |
| GTTTACTCTTACTAGGGTGT+TGG | + | chr1_3:20299705-20299724 | None:intergenic | 40.0% | |
| ACACTTGCCAATAGAATGCA+AGG | - | chr1_3:20299814-20299833 | Msa0108710:intron | 40.0% | |
| !! | CAAACACACCTTTGAAGTGT+CGG | + | chr1_3:20299901-20299920 | None:intergenic | 40.0% |
| TGATACGACATCAACACATG+TGG | - | chr1_3:20299932-20299951 | Msa0108710:intron | 40.0% | |
| ! | GTTTGATTTCTTGTCGGGCA+TGG | - | chr1_3:20297064-20297083 | Msa0108710:three_prime_UTR | 45.0% |
| ACAAAATGTGGCTGCAACTG+CGG | - | chr1_3:20297172-20297191 | Msa0108710:three_prime_UTR | 45.0% | |
| TTGTGATAGAGGGGTAACCT+TGG | - | chr1_3:20297494-20297513 | Msa0108710:CDS | 45.0% | |
| CAACTTTACAAGTTGCGCCA+AGG | + | chr1_3:20297514-20297533 | None:intergenic | 45.0% | |
| AACACAACCTCTACCTCGAA+TGG | - | chr1_3:20297805-20297824 | Msa0108710:CDS | 45.0% | |
| !! | TGTTGAGTTGGTACCATGCA+AGG | + | chr1_3:20298852-20298871 | None:intergenic | 45.0% |
| GATTGGCATCACTTCAGGAA+TGG | - | chr1_3:20298911-20298930 | Msa0108710:CDS | 45.0% | |
| AAACACCAACGTCTACCTCA+AGG | - | chr1_3:20299056-20299075 | Msa0108710:intron | 45.0% | |
| TTGTACCTTGAGGTAGACGT+TGG | + | chr1_3:20299064-20299083 | None:intergenic | 45.0% | |
| GAAAAAGCTCCAACTCTCTG+AGG | + | chr1_3:20299206-20299225 | None:intergenic | 45.0% | |
| AGATCCACAACACCAAAGAC+TGG | - | chr1_3:20299421-20299440 | Msa0108710:CDS | 45.0% | |
| !! | TCTACCAGTCTTTGGTGTTG+TGG | + | chr1_3:20299428-20299447 | None:intergenic | 45.0% |
| ! | GTGGATCTGTTGCTTGAGTT+TGG | + | chr1_3:20299460-20299479 | None:intergenic | 45.0% |
| TGCATTTGAAGGACTTGTGG+TGG | + | chr1_3:20299479-20299498 | None:intergenic | 45.0% | |
| TCCGAAGGATACTGCAAGAA+AGG | + | chr1_3:20299622-20299641 | None:intergenic | 45.0% | |
| CGTCTTCTTAAGTCCCTACT+TGG | - | chr1_3:20299724-20299743 | Msa0108710:intron | 45.0% | |
| TTCTTAAGTCCCTACTTGGC+AGG | - | chr1_3:20299728-20299747 | Msa0108710:intron | 45.0% | |
| !! | ATGAAGCACCGACACTTCAA+AGG | - | chr1_3:20299890-20299909 | Msa0108710:intron | 45.0% |
| ! | CGACACTTCAAAGGTGTGTT+TGG | - | chr1_3:20299899-20299918 | Msa0108710:intron | 45.0% |
| CATATGCAGGGTCCAGGAAA+GGG | + | chr1_3:20297587-20297606 | None:intergenic | 50.0% | |
| TTTCCTGGACCCTGCATATG+CGG | - | chr1_3:20297587-20297606 | Msa0108710:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr1_3:20297599-20297618 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr1_3:20297600-20297619 | None:intergenic | 50.0% | |
| ! | ATGCGGGAGCTTTAGTACAC+CGG | - | chr1_3:20297604-20297623 | Msa0108710:intron | 50.0% |
| TTGGAAGCCATTCGAGGTAG+AGG | + | chr1_3:20297815-20297834 | None:intergenic | 50.0% | |
| AGGTTTCCACTTTCGCGTAC+CGG | - | chr1_3:20299385-20299404 | Msa0108710:CDS | 50.0% | |
| AATGATCCGGTACGCGAAAG+TGG | + | chr1_3:20299394-20299413 | None:intergenic | 50.0% | |
| !! | CGCATTGAAGCTGATTTGCG+CGG | + | chr1_3:20299646-20299665 | None:intergenic | 50.0% |
| GTGGTCAGCAGCTGCACTTA+TGG | + | chr1_3:20297232-20297251 | None:intergenic | 55.0% | |
| CAGGAAAGGGTCCCACCATT+TGG | + | chr1_3:20297574-20297593 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCTTTCC+TGG | - | chr1_3:20297572-20297591 | Msa0108710:intron | 55.0% |
| GCATATGCAGGGTCCAGGAA+AGG | + | chr1_3:20297588-20297607 | None:intergenic | 55.0% | |
| TTCCTGGACCCTGCATATGC+GGG | - | chr1_3:20297588-20297607 | Msa0108710:intron | 55.0% | |
| ! | TGCGGGAGCTTTAGTACACC+GGG | - | chr1_3:20297605-20297624 | Msa0108710:intron | 55.0% |
| TCAGTTGGGGAGACCTTGCA+TGG | - | chr1_3:20298836-20298855 | Msa0108710:intron | 55.0% | |
| CGCGAAAGTGGAAACCTGTG+TGG | + | chr1_3:20299382-20299401 | None:intergenic | 55.0% | |
| AGACTTGCGCCTGCCAAGTA+GGG | + | chr1_3:20299740-20299759 | None:intergenic | 55.0% | |
| TAGACTTGCGCCTGCCAAGT+AGG | + | chr1_3:20299741-20299760 | None:intergenic | 55.0% | |
| TGGCAGGCGCAAGTCTAAGA+AGG | - | chr1_3:20299744-20299763 | Msa0108710:intron | 55.0% | |
| AGCGGACAGTTTCGCCACAC+AGG | - | chr1_3:20299365-20299384 | Msa0108710:CDS | 60.0% | |
| CTCCCGCATATGCAGGGTCC+AGG | + | chr1_3:20297593-20297612 | None:intergenic | 65.0% | |
| !! | GCTGATTTGCGCGGCTCCGA+AGG | + | chr1_3:20299637-20299656 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 20296981 | 20300221 | 20296981 | ID=Msa0108710;Name=Msa0108710 |
| chr1_3 | mRNA | 20296981 | 20300221 | 20296981 | ID=Msa0108710-mRNA-1;Parent=Msa0108710;Name=Msa0108710-mRNA-1;_AED=0.16;_eAED=0.16;_QI=282|1|1|1|0.88|0.8|10|420|336 |
| chr1_3 | exon | 20296981 | 20297571 | 20296981 | ID=Msa0108710-mRNA-1:exon:7350;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20297695 | 20297840 | 20297695 | ID=Msa0108710-mRNA-1:exon:7349;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20297942 | 20298030 | 20297942 | ID=Msa0108710-mRNA-1:exon:7348;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20298125 | 20298167 | 20298125 | ID=Msa0108710-mRNA-1:exon:7347;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20298270 | 20298362 | 20298270 | ID=Msa0108710-mRNA-1:exon:7346;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20298497 | 20298596 | 20298497 | ID=Msa0108710-mRNA-1:exon:7345;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20298910 | 20299060 | 20298910 | ID=Msa0108710-mRNA-1:exon:7344;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20299141 | 20299223 | 20299141 | ID=Msa0108710-mRNA-1:exon:7343;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20299316 | 20299446 | 20299316 | ID=Msa0108710-mRNA-1:exon:7342;Parent=Msa0108710-mRNA-1 |
| chr1_3 | exon | 20299936 | 20300221 | 20299936 | ID=Msa0108710-mRNA-1:exon:7341;Parent=Msa0108710-mRNA-1 |
| chr1_3 | five_prime_UTR | 20299940 | 20300221 | 20299940 | ID=Msa0108710-mRNA-1:five_prime_utr;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20299936 | 20299939 | 20299936 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20299316 | 20299446 | 20299316 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20299141 | 20299223 | 20299141 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20298910 | 20299060 | 20298910 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20298497 | 20298596 | 20298497 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20298270 | 20298362 | 20298270 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20298125 | 20298167 | 20298125 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20297942 | 20298030 | 20297942 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20297695 | 20297840 | 20297695 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | CDS | 20297401 | 20297571 | 20297401 | ID=Msa0108710-mRNA-1:cds;Parent=Msa0108710-mRNA-1 |
| chr1_3 | three_prime_UTR | 20296981 | 20297400 | 20296981 | ID=Msa0108710-mRNA-1:three_prime_utr;Parent=Msa0108710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
