AlfalfaGEDB | Msa0146650

M. sativa cultivar zhongmu-4 / Msa0146650

KEGG: -
GO: GO:0000325 GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0005938 GO:0006521 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009826 GO:0009832 GO:0009834 GO:0009893 GO:0009914 GO:0009966 GO:0009987 GO:0010033 GO:0010315 GO:0010565 GO:0010646 GO:0010817 GO:0010928 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0019222 GO:0022857 GO:0023051 GO:0023052 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0032350 GO:0032352 GO:0032502 GO:0032870 GO:0032989 GO:0033238 GO:0033240 GO:0040007 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045764 GO:0048518 GO:0048522 GO:0048583 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060560 GO:0060918 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0080090 GO:0090354 GO:0090355 GO:0090357 GO:0090358 GO:0098588 GO:0098805 GO:0099568
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146650	XP_003589345.1	96.088	409	4	4	1	406	1	400	0.0	781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146650	sp\|Q94AP3\|WAT1_ARATH	72.927	410	86	7	1	406	1	389	0.0	585

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146650	G7I5V7	96.088	409	4	4	1	406	1	400	0.0	781

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0146650	0.983072	9.360793e-157	-8.615850e-47
Msa0005020	Msa0146650	0.803086	4.123159e-49	-8.615850e-47
Msa0008040	Msa0146650	0.829171	5.977003e-55	-8.615850e-47
Msa0014770	Msa0146650	0.834384	3.091758e-56	-8.615850e-47
Msa0015150	Msa0146650	0.822977	1.774220e-53	-8.615850e-47
Msa0017670	Msa0146650	0.828445	8.952890e-55	-8.615850e-47
Msa0019900	Msa0146650	0.815653	8.281229e-52	-8.615850e-47
Msa0025160	Msa0146650	0.888958	3.719537e-73	-8.615850e-47
Msa0025580	Msa0146650	0.862494	4.869985e-64	-8.615850e-47
Msa0027280	Msa0146650	0.808000	3.840169e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146650	MtrunA17_Chr1g0155761	96.088	409	4	4	1	406	1	400	0.0	781
Msa0146650	MtrunA17_Chr3g0142131	80.440	409	62	7	1	406	1	394	0.0	629
Msa0146650	MtrunA17_Chr6g0483401	55.585	376	124	4	30	405	19	351	4.05e-138	399
Msa0146650	MtrunA17_Chr5g0408001	37.731	379	222	4	18	394	7	373	5.55e-82	256
Msa0146650	MtrunA17_Chr5g0407971	40.678	354	190	6	18	367	8	345	2.84e-81	254
Msa0146650	MtrunA17_Chr5g0407991	37.468	387	204	6	18	393	6	365	9.46e-81	253
Msa0146650	MtrunA17_Chr5g0408041	39.142	373	209	5	23	393	13	369	4.87e-79	249
Msa0146650	MtrunA17_Chr5g0408031	38.692	367	205	5	18	382	7	355	2.39e-78	247
Msa0146650	MtrunA17_Chr7g0255561	37.429	350	197	2	18	367	11	338	6.78e-76	241
Msa0146650	MtrunA17_Chr7g0255581	37.429	350	197	2	18	367	11	338	6.78e-76	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0146650	AT1G75500.1	72.927	410	86	7	1	406	1	389	0.0	585
Msa0146650	AT1G75500.2	72.927	410	86	7	1	406	1	389	0.0	585
Msa0146650	AT3G53210.1	51.407	391	160	4	16	401	4	369	1.11e-139	403
Msa0146650	AT3G18200.2	53.968	378	146	3	16	393	29	378	4.47e-137	397
Msa0146650	AT3G53210.3	55.235	277	99	3	16	292	4	255	2.86e-103	306
Msa0146650	AT3G53210.2	48.875	311	129	4	96	401	27	312	6.40e-100	300
Msa0146650	AT3G18200.1	48.188	276	115	3	118	393	1	248	1.06e-81	251
Msa0146650	AT4G30420.2	37.093	399	214	8	18	406	5	376	5.44e-76	241
Msa0146650	AT4G30420.1	37.405	393	209	8	24	406	1	366	2.18e-75	239
Msa0146650	AT5G45370.2	36.856	369	221	3	18	386	16	372	7.13e-75	238

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Find 112 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTCTCAAGATTAGAAT+TGG	0.393786	1_4:+6360333	Msa0146650:three_prime_UTR
AACATATATATAAAAGCATA+TGG	0.370997	1_4:-6360221	None:intergenic
AACCAGCATAACCAAACTGC+AGG	0.522465	1_4:-6357579	None:intergenic
AAGTGACAGAAAGACGAGCA+GGG	0.633913	1_4:-6358962	None:intergenic
AATCAAGGTTTCTATTTGCT+TGG	0.366777	1_4:+6358446	Msa0146650:CDS
AATGTCACTTGGTGATGCAA+AGG	0.570694	1_4:+6358845	Msa0146650:CDS
ACAGTACCAATGATTGATTT+TGG	0.182728	1_4:+6358819	Msa0146650:CDS
ACATATATATAAAAGCATAT+GGG	0.572868	1_4:-6360220	None:intergenic
ACATGCAGCTGAAATTTCTC+AGG	0.434745	1_4:-6357544	None:intergenic
ACCAAACTGCAGGGCCAACA+TGG	0.565314	1_4:-6357569	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTAATTAGCAAAAGAAAGG+TGG	-	chr1_4:6357377-6357396	None:intergenic	30.0%
CTAATTAACCAACACTTGTT+TGG	+	chr1_4:6357388-6357407	Msa0146650:five_prime_UTR	30.0%
GTACAAAATTTCATGGATGA+GGG	-	chr1_4:6357761-6357780	None:intergenic	30.0%
TGTACAAAATTTCATGGATG+AGG	-	chr1_4:6357762-6357781	None:intergenic	30.0%
AGGAAGTTTAAATTAATCGG+TGG	-	chr1_4:6358175-6358194	None:intergenic	30.0%
AATCAAGGTTTCTATTTGCT+TGG	+	chr1_4:6358446-6358465	Msa0146650:CDS	30.0%
ATCAAGGTTTCTATTTGCTT+GGG	+	chr1_4:6358447-6358466	Msa0146650:CDS	30.0%
CTACTTGGACTATATATAGT+TGG	-	chr1_4:6358750-6358769	None:intergenic	30.0%
ATTGTCCCAAAATCAATCAT+TGG	-	chr1_4:6358828-6358847	None:intergenic	30.0%
CTTGGATGTCTTTATCTAAT+TGG	+	chr1_4:6358882-6358901	Msa0146650:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	6357366	6360661	6357366	ID=Msa0146650;Name=Msa0146650
chr1_4	mRNA	6357366	6360661	6357366	ID=Msa0146650-mRNA-1;Parent=Msa0146650;Name=Msa0146650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130\|0.83\|0.85\|1\|0.66\|0.57\|7\|609\|406
chr1_4	exon	6357366	6357716	6357366	ID=Msa0146650-mRNA-1:exon:2775;Parent=Msa0146650-mRNA-1
chr1_4	exon	6358162	6358224	6358162	ID=Msa0146650-mRNA-1:exon:2776;Parent=Msa0146650-mRNA-1
chr1_4	exon	6358436	6358576	6358436	ID=Msa0146650-mRNA-1:exon:2777;Parent=Msa0146650-mRNA-1
chr1_4	exon	6358647	6359100	6358647	ID=Msa0146650-mRNA-1:exon:2778;Parent=Msa0146650-mRNA-1
chr1_4	exon	6359191	6359342	6359191	ID=Msa0146650-mRNA-1:exon:2779;Parent=Msa0146650-mRNA-1
chr1_4	exon	6359840	6360502	6359840	ID=Msa0146650-mRNA-1:exon:2780;Parent=Msa0146650-mRNA-1
chr1_4	exon	6360526	6360661	6360526	ID=Msa0146650-mRNA-1:exon:2781;Parent=Msa0146650-mRNA-1
chr1_4	five_prime_UTR	6357366	6357495	6357366	ID=Msa0146650-mRNA-1:five_prime_utr;Parent=Msa0146650-mRNA-1
chr1_4	CDS	6357496	6357716	6357496	ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4	CDS	6358162	6358224	6358162	ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4	CDS	6358436	6358576	6358436	ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4	CDS	6358647	6359100	6358647	ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4	CDS	6359191	6359342	6359191	ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4	CDS	6359840	6360029	6359840	ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4	three_prime_UTR	6360030	6360502	6360030	ID=Msa0146650-mRNA-1:three_prime_utr;Parent=Msa0146650-mRNA-1
chr1_4	three_prime_UTR	6360526	6360661	6360526	ID=Msa0146650-mRNA-1:three_prime_utr;Parent=Msa0146650-mRNA-1

Gene Sequence

>Msa0146650

ATGGCTGATTTAGGTTCAGCTTCTTCCAAGAGAATGTGGTGTTCTATCCCTGAGAAATTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTCCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTATTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGCAAGTAAAAATATTTCATATTATGATAGAGCAAGTGAGACTGAATCGAAAAGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGTGCATCAGTGATTACATTATATCAAGGACCAACTATATATAGTCCAAGTAGTCACTTAAATAGTGGCACAAGCACAACAATAATAACAGAAGTAACAACAACAGTACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTACCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTCTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGTGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGTTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>Msa0146650

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRQVKIFHIMIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSSHLNSGTSTTIITEVTTTVPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*