AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0146650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146650 MtrunA17_Chr1g0155761 96.088 409 4 4 1 406 1 400 0.0 781
Msa0146650 MtrunA17_Chr3g0142131 80.440 409 62 7 1 406 1 394 0.0 629
Msa0146650 MtrunA17_Chr6g0483401 55.585 376 124 4 30 405 19 351 4.05e-138 399
Msa0146650 MtrunA17_Chr5g0408001 37.731 379 222 4 18 394 7 373 5.55e-82 256
Msa0146650 MtrunA17_Chr5g0407971 40.678 354 190 6 18 367 8 345 2.84e-81 254
Msa0146650 MtrunA17_Chr5g0407991 37.468 387 204 6 18 393 6 365 9.46e-81 253
Msa0146650 MtrunA17_Chr5g0408041 39.142 373 209 5 23 393 13 369 4.87e-79 249
Msa0146650 MtrunA17_Chr5g0408031 38.692 367 205 5 18 382 7 355 2.39e-78 247
Msa0146650 MtrunA17_Chr7g0255561 37.429 350 197 2 18 367 11 338 6.78e-76 241
Msa0146650 MtrunA17_Chr7g0255581 37.429 350 197 2 18 367 11 338 6.78e-76 241
Msa0146650 MtrunA17_Chr8g0369841 37.322 351 206 5 18 367 6 343 1.20e-75 239
Msa0146650 MtrunA17_Chr8g0354121 38.810 353 187 6 18 366 10 337 1.02e-74 238
Msa0146650 MtrunA17_Chr1g0160171 37.330 367 195 4 1 365 1 334 1.11e-74 237
Msa0146650 MtrunA17_Chr5g0404811 47.308 260 108 4 144 398 8 243 1.45e-74 233
Msa0146650 MtrunA17_Chr1g0186641 34.146 369 207 5 18 381 10 347 1.24e-73 233
Msa0146650 MtrunA17_Chr1g0186611 33.784 370 210 4 18 383 13 351 1.58e-73 233
Msa0146650 MtrunA17_Chr3g0114691 34.930 355 207 3 18 372 17 347 3.36e-73 234
Msa0146650 MtrunA17_Chr1g0186601 34.501 371 208 5 18 384 13 352 4.91e-73 232
Msa0146650 MtrunA17_Chr1g0160181 37.500 352 195 4 23 373 20 347 7.99e-73 233
Msa0146650 MtrunA17_Chr1g0171301 33.424 368 216 5 9 373 2 343 1.90e-71 228
Msa0146650 MtrunA17_Chr3g0081421 37.607 351 192 4 18 365 14 340 7.83e-71 228
Msa0146650 MtrunA17_Chr1g0164831 33.880 366 210 5 24 389 6 339 3.45e-70 224
Msa0146650 MtrunA17_Chr6g0463971 35.556 360 206 5 15 373 10 344 4.74e-70 224
Msa0146650 MtrunA17_Chr8g0334761 35.775 355 201 3 12 365 1 329 1.09e-69 224
Msa0146650 MtrunA17_Chr2g0284261 34.000 350 203 3 18 367 5 326 1.59e-69 223
Msa0146650 MtrunA17_Chr1g0186561 35.537 363 200 5 18 376 13 345 4.44e-69 222
Msa0146650 MtrunA17_Chr3g0081511 36.512 367 195 4 7 366 3 338 5.22e-69 223
Msa0146650 MtrunA17_Chr3g0114731 36.522 345 187 3 23 365 20 334 6.82e-68 220
Msa0146650 MtrunA17_Chr1g0186571 33.518 361 205 6 18 374 10 339 1.38e-67 218
Msa0146650 MtrunA17_Chr7g0271561 34.211 342 206 2 24 365 10 332 8.38e-67 217
Msa0146650 MtrunA17_Chr1g0182291 35.311 354 190 4 18 365 12 332 8.68e-66 214
Msa0146650 MtrunA17_Chr2g0310441 35.417 384 213 8 24 399 13 369 2.38e-65 213
Msa0146650 MtrunA17_Chr3g0114711 33.592 387 189 5 18 365 11 368 4.56e-65 213
Msa0146650 MtrunA17_Chr4g0059311 32.951 349 207 4 25 372 15 337 1.05e-64 211
Msa0146650 MtrunA17_Chr2g0278561 33.756 394 228 5 10 396 4 371 6.61e-63 207
Msa0146650 MtrunA17_Chr3g0129601 32.648 389 209 5 6 379 14 364 1.38e-62 205
Msa0146650 MtrunA17_Chr7g0263101 34.181 354 196 5 18 365 10 332 3.83e-62 204
Msa0146650 MtrunA17_Chr1g0184221 30.749 374 205 5 18 372 13 351 7.61e-62 204
Msa0146650 MtrunA17_Chr3g0114701 36.994 346 193 4 23 367 11 332 7.95e-62 204
Msa0146650 MtrunA17_Chr1g0160111 32.143 336 208 3 30 365 16 331 2.02e-61 202
Msa0146650 MtrunA17_Chr8g0383731 34.012 344 207 3 23 366 7 330 4.74e-60 198
Msa0146650 MtrunA17_Chr8g0334771 34.930 355 204 4 12 365 1 329 3.67e-58 194
Msa0146650 MtrunA17_Chr3g0126101 33.841 328 188 4 38 365 23 321 2.29e-57 191
Msa0146650 MtrunA17_Chr3g0129571 32.081 346 209 6 23 365 9 331 2.61e-57 191
Msa0146650 MtrunA17_Chr3g0129591 32.754 345 208 4 23 365 7 329 1.91e-56 189
Msa0146650 MtrunA17_Chr8g0334751 34.121 381 214 5 24 403 14 358 3.38e-56 189
Msa0146650 MtrunA17_Chr4g0073241 31.959 388 223 8 24 406 11 362 1.21e-55 187
Msa0146650 MtrunA17_Chr5g0413961 34.444 360 204 4 11 368 2 331 3.36e-55 186
Msa0146650 MtrunA17_Chr2g0290611 34.503 342 200 3 26 367 17 334 4.97e-55 186
Msa0146650 MtrunA17_Chr5g0413941 31.638 354 212 6 16 367 2 327 4.25e-53 180
Msa0146650 MtrunA17_Chr2g0278551 33.240 358 213 3 26 383 17 348 4.48e-53 181
Msa0146650 MtrunA17_Chr2g0278541 34.483 348 210 3 24 371 15 344 1.93e-52 180
Msa0146650 MtrunA17_Chr5g0404801 69.167 120 37 0 16 135 2 121 3.87e-51 167
Msa0146650 MtrunA17_Chr5g0413921 29.412 357 224 4 18 373 4 333 1.98e-49 170
Msa0146650 MtrunA17_Chr4g0050891 31.909 351 218 3 10 360 2 331 7.87e-49 169
Msa0146650 MtrunA17_Chr2g0332001 31.412 347 202 4 26 367 43 358 1.82e-48 169
Msa0146650 MtrunA17_Chr3g0129581 31.014 345 214 4 23 365 7 329 2.67e-48 168
Msa0146650 MtrunA17_Chr5g0413951 29.738 343 211 6 26 366 12 326 2.16e-47 165
Msa0146650 MtrunA17_Chr4g0051021 28.609 381 247 3 26 405 19 375 3.17e-47 166
Msa0146650 MtrunA17_Chr1g0150151 31.977 344 207 4 25 366 15 333 9.54e-46 161
Msa0146650 MtrunA17_Chr5g0428881 28.421 380 243 4 21 394 18 374 1.41e-45 161
Msa0146650 MtrunA17_Chr1g0177221 33.673 294 164 5 1 293 1 264 1.17e-44 155
Msa0146650 MtrunA17_Chr4g0050941 30.867 392 237 6 24 406 15 381 5.18e-44 157
Msa0146650 MtrunA17_Chr5g0413931 30.029 343 210 7 26 366 11 325 2.78e-43 154
Msa0146650 MtrunA17_Chr4g0050931 29.096 354 193 2 14 367 5 300 9.55e-41 147
Msa0146650 MtrunA17_Chr7g0227921 30.814 344 207 5 25 366 15 329 4.14e-40 146
Msa0146650 MtrunA17_Chr4g0050881 29.058 382 227 9 15 386 3 350 2.11e-39 144
Msa0146650 MtrunA17_Chr4g0056081 29.558 362 214 10 25 376 18 348 2.41e-38 141
Msa0146650 MtrunA17_Chr1g0211801 31.716 268 156 4 26 293 16 256 7.03e-38 137
Msa0146650 MtrunA17_Chr5g0441761 26.686 341 219 3 25 365 18 327 4.34e-37 138
Msa0146650 MtrunA17_Chr5g0399281 29.830 352 215 9 18 365 5 328 1.05e-35 134
Msa0146650 MtrunA17_Chr5g0429001 28.438 320 206 4 88 406 18 315 2.42e-35 132
Msa0146650 MtrunA17_Chr3g0084091 30.986 284 169 4 101 384 10 266 7.83e-35 130
Msa0146650 MtrunA17_Chr4g0051001 27.405 343 221 4 5 343 12 330 3.52e-34 129
Msa0146650 MtrunA17_Chr6g0451211 27.761 335 198 8 41 366 32 331 1.09e-33 129
Msa0146650 MtrunA17_Chr2g0278021 35.556 225 134 2 143 367 1 214 2.51e-32 123
Msa0146650 MtrunA17_Chr6g0451201 28.610 367 224 7 41 406 32 361 8.76e-31 121
Msa0146650 MtrunA17_Chr3g0126091 24.930 357 233 8 24 373 14 342 6.70e-30 118
Msa0146650 MtrunA17_Chr6g0451251 29.096 354 218 6 41 391 32 355 1.86e-29 117
Msa0146650 MtrunA17_Chr8g0334721 38.194 144 84 2 258 401 2 140 7.47e-29 110
Msa0146650 MtrunA17_Chr6g0451261 25.478 314 204 5 35 346 25 310 6.05e-28 116
Msa0146650 MtrunA17_Chr6g0451171 27.434 339 213 7 30 366 21 328 7.79e-28 112
Msa0146650 MtrunA17_Chr8g0334711 32.589 224 123 5 18 240 7 203 1.82e-24 100
Msa0146650 MtrunA17_Chr6g0451191 26.667 225 142 2 143 366 1 203 1.59e-20 90.1
Msa0146650 MtrunA17_Chr8g0334731 27.391 230 120 5 13 240 3 187 1.50e-16 77.8
Msa0146650 MtrunA17_Chr1g0177231 38.947 95 57 1 279 373 15 108 4.87e-16 74.3
Msa0146650 MtrunA17_Chr2g0278031 39.815 108 65 0 26 133 19 126 1.10e-14 70.5
Msa0146650 MtrunA17_Chr1g0182261 33.077 130 84 3 241 367 83 212 2.13e-14 72.4
Msa0146650 MtrunA17_Chr1g0172891 40.541 74 44 0 300 373 13 86 4.40e-14 68.6
Msa0146650 MtrunA17_Chr1g0211811 42.254 71 41 0 295 365 1 71 5.11e-14 67.4
Msa0146650 MtrunA17_Chr4g0050921 33.333 102 68 0 245 346 3 104 6.53e-14 68.6
Msa0146650 MtrunA17_Chr4g0050911 33.094 139 76 2 106 244 16 137 1.49e-11 62.4
Msa0146650 MtrunA17_Chr1g0172881 27.429 175 92 5 128 293 1 149 3.32e-11 61.2
Msa0146650 MtrunA17_Chr8g0334741 28.571 140 71 3 258 393 2 116 7.36e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0146650 AT1G75500.1 72.927 410 86 7 1 406 1 389 0.0 585
Msa0146650 AT1G75500.2 72.927 410 86 7 1 406 1 389 0.0 585
Msa0146650 AT3G53210.1 51.407 391 160 4 16 401 4 369 1.11e-139 403
Msa0146650 AT3G18200.2 53.968 378 146 3 16 393 29 378 4.47e-137 397
Msa0146650 AT3G53210.3 55.235 277 99 3 16 292 4 255 2.86e-103 306
Msa0146650 AT3G53210.2 48.875 311 129 4 96 401 27 312 6.40e-100 300
Msa0146650 AT3G18200.1 48.188 276 115 3 118 393 1 248 1.06e-81 251
Msa0146650 AT4G30420.2 37.093 399 214 8 18 406 5 376 5.44e-76 241
Msa0146650 AT4G30420.1 37.405 393 209 8 24 406 1 366 2.18e-75 239
Msa0146650 AT5G45370.2 36.856 369 221 3 18 386 16 372 7.13e-75 238
Msa0146650 AT5G45370.4 36.856 369 221 3 18 386 16 372 7.13e-75 238
Msa0146650 AT5G45370.1 36.585 369 198 3 18 386 16 348 1.14e-74 237
Msa0146650 AT3G45870.1 40.698 344 186 4 18 360 8 334 1.06e-72 233
Msa0146650 AT5G07050.1 36.288 361 204 4 23 379 19 357 4.33e-72 231
Msa0146650 AT1G09380.1 37.537 341 189 3 24 363 10 327 1.14e-69 224
Msa0146650 AT2G39510.1 35.920 348 188 4 24 366 10 327 1.76e-68 221
Msa0146650 AT1G44800.1 33.425 365 205 4 18 373 7 342 5.06e-68 220
Msa0146650 AT4G08290.1 34.367 387 228 3 18 403 9 370 6.27e-68 220
Msa0146650 AT4G08300.1 33.425 362 212 4 18 376 7 342 9.38e-68 219
Msa0146650 AT2G40900.1 35.674 356 198 3 12 367 1 325 8.61e-67 218
Msa0146650 AT1G21890.1 33.065 372 228 3 23 392 12 364 9.42e-67 217
Msa0146650 AT3G45870.8 40.061 327 178 4 18 343 8 317 1.18e-66 215
Msa0146650 AT3G30340.1 32.378 349 209 4 26 373 15 337 9.47e-66 214
Msa0146650 AT4G19185.1 38.218 348 197 5 23 367 22 354 1.24e-65 214
Msa0146650 AT2G37460.1 34.417 369 203 7 18 380 11 346 4.83e-62 205
Msa0146650 AT1G43650.1 32.967 364 213 5 23 384 8 342 3.79e-60 199
Msa0146650 AT5G13670.1 32.571 350 211 4 18 366 4 329 5.13e-59 197
Msa0146650 AT4G01440.1 33.832 334 195 3 41 374 29 336 7.64e-59 196
Msa0146650 AT4G01430.1 32.571 350 210 4 18 365 5 330 1.43e-58 195
Msa0146650 AT1G11450.3 34.302 344 200 3 24 367 18 335 2.14e-58 194
Msa0146650 AT1G01070.1 32.861 353 211 3 16 367 10 337 6.39e-58 194
Msa0146650 AT3G56620.1 32.955 352 206 3 12 363 1 322 3.23e-56 189
Msa0146650 AT1G21890.2 33.746 323 193 3 23 343 12 315 7.65e-55 185
Msa0146650 AT1G11450.5 35.331 317 179 3 51 367 1 291 1.13e-54 183
Msa0146650 AT3G45870.9 40.433 277 147 4 18 293 8 267 2.68e-54 181
Msa0146650 AT4G01440.3 34.323 303 173 3 41 343 29 305 2.58e-53 180
Msa0146650 AT1G11450.2 35.714 308 172 3 60 367 3 284 5.30e-53 179
Msa0146650 AT1G11460.1 32.558 344 207 2 24 367 18 336 1.75e-52 179
Msa0146650 AT4G28040.1 29.915 351 205 5 18 365 4 316 3.95e-50 173
Msa0146650 AT4G28040.5 29.915 351 205 5 18 365 4 316 3.95e-50 173
Msa0146650 AT4G28040.3 29.915 351 205 5 18 365 4 316 3.95e-50 173
Msa0146650 AT4G28040.4 29.915 351 205 5 18 365 4 316 3.95e-50 173
Msa0146650 AT4G28040.2 29.915 351 205 5 18 365 4 316 3.95e-50 173
Msa0146650 AT5G64700.1 29.973 367 236 5 18 383 4 350 6.35e-50 172
Msa0146650 AT4G01430.2 31.707 328 198 4 18 343 5 308 7.01e-50 171
Msa0146650 AT1G11450.4 33.125 320 188 2 24 343 18 311 1.50e-49 170
Msa0146650 AT5G45370.6 34.397 282 173 3 105 386 1 270 5.30e-47 162
Msa0146650 AT5G45370.5 34.397 282 173 3 105 386 1 270 5.30e-47 162
Msa0146650 AT1G68170.2 29.744 390 243 4 14 402 5 364 1.33e-46 164
Msa0146650 AT1G01070.2 32.890 301 176 3 68 367 15 290 2.59e-46 162
Msa0146650 AT2G37450.2 31.933 357 183 9 24 374 11 313 3.80e-46 162
Msa0146650 AT4G19185.2 35.507 276 160 5 95 367 16 276 4.37e-46 161
Msa0146650 AT1G25270.1 31.686 344 211 3 24 367 5 324 5.06e-46 162
Msa0146650 AT1G68170.1 30.343 379 233 4 25 402 6 354 9.61e-46 161
Msa0146650 AT4G08290.2 34.783 276 154 3 18 292 9 259 6.82e-45 157
Msa0146650 AT1G11450.1 35.821 268 146 3 100 367 2 243 5.50e-44 154
Msa0146650 AT4G01450.2 34.663 326 181 3 41 365 29 323 6.60e-44 157
Msa0146650 AT5G40210.1 30.659 349 190 10 25 368 16 317 9.75e-44 155
Msa0146650 AT3G30340.2 31.599 269 157 4 26 293 15 257 1.02e-43 154
Msa0146650 AT3G28130.2 31.818 352 204 11 22 367 13 334 1.70e-43 155
Msa0146650 AT5G40240.2 29.268 369 236 5 1 368 13 357 4.77e-43 155
Msa0146650 AT5G40240.1 30.435 345 215 5 25 368 23 343 6.18e-43 154
Msa0146650 AT5G40240.3 30.435 345 215 5 25 368 23 343 6.18e-43 154
Msa0146650 AT4G01450.1 33.882 304 169 3 41 343 29 301 2.74e-42 152
Msa0146650 AT4G01440.4 34.783 253 139 3 41 293 29 255 7.48e-42 149
Msa0146650 AT3G28100.1 29.640 361 218 9 25 381 17 345 2.06e-40 147
Msa0146650 AT3G28050.1 30.105 382 224 11 25 398 15 361 5.10e-40 146
Msa0146650 AT5G40230.1 28.042 378 232 7 25 395 24 368 6.21e-40 146
Msa0146650 AT3G28130.5 32.453 265 151 7 105 367 10 248 5.54e-39 141
Msa0146650 AT3G28130.1 32.453 265 151 7 105 367 10 248 5.54e-39 141
Msa0146650 AT1G70260.1 28.022 364 235 5 24 381 14 356 3.74e-38 142
Msa0146650 AT5G45370.3 33.203 256 165 3 132 386 62 312 5.73e-38 140
Msa0146650 AT3G45870.5 35.628 247 145 5 119 360 22 259 1.88e-37 138
Msa0146650 AT3G28070.2 29.286 280 166 6 105 382 8 257 3.79e-37 136
Msa0146650 AT3G28080.1 29.429 350 209 8 25 367 17 335 7.50e-37 137
Msa0146650 AT3G28070.1 29.286 280 166 6 105 382 100 349 3.53e-36 136
Msa0146650 AT3G28080.5 30.189 265 157 5 105 367 8 246 4.70e-36 133
Msa0146650 AT3G28080.7 30.189 265 157 5 105 367 8 246 4.70e-36 133
Msa0146650 AT3G28080.8 30.189 265 157 5 105 367 8 246 4.70e-36 133
Msa0146650 AT3G28080.6 30.189 265 157 5 105 367 8 246 4.70e-36 133
Msa0146650 AT4G01440.5 30.556 252 149 3 123 374 3 228 7.45e-36 132
Msa0146650 AT4G01440.2 30.556 252 149 3 123 374 3 228 7.45e-36 132
Msa0146650 AT4G01450.4 33.465 254 137 3 41 293 29 251 1.29e-35 132
Msa0146650 AT3G28080.2 30.189 265 157 5 105 367 89 327 2.87e-35 133
Msa0146650 AT5G47470.1 26.796 362 226 7 9 365 17 344 8.68e-34 129
Msa0146650 AT5G47470.3 26.796 362 226 7 9 365 45 372 9.08e-34 130
Msa0146650 AT5G47470.2 26.796 362 226 7 9 365 45 372 9.48e-34 130
Msa0146650 AT1G43650.2 31.111 270 157 4 23 292 8 248 3.38e-33 125
Msa0146650 AT2G37450.3 32.482 274 146 7 107 374 1 241 4.21e-33 125
Msa0146650 AT4G16620.1 27.123 365 230 6 30 386 20 356 2.82e-32 125
Msa0146650 AT3G45870.6 34.348 230 137 5 119 343 22 242 2.21e-31 120
Msa0146650 AT3G45870.7 34.348 230 137 5 119 343 22 242 2.21e-31 120
Msa0146650 AT4G15540.1 27.446 368 223 6 25 391 20 344 3.28e-31 122
Msa0146650 AT4G15540.2 27.446 368 223 6 25 391 20 344 3.28e-31 122
Msa0146650 AT4G01450.3 34.234 222 114 3 41 261 29 219 2.07e-30 117
Msa0146650 AT3G45870.2 43.662 142 79 1 219 360 43 183 4.20e-30 116
Msa0146650 AT3G28130.3 30.837 227 137 6 143 367 1 209 1.83e-29 114
Msa0146650 AT4G01430.3 30.769 208 127 2 159 365 2 193 1.85e-29 114
Msa0146650 AT1G60050.1 26.126 333 224 3 38 367 29 342 2.26e-29 117
Msa0146650 AT5G64700.2 30.952 252 153 5 29 279 15 246 1.49e-27 110
Msa0146650 AT3G28070.5 27.273 242 152 5 143 382 1 220 3.44e-27 108
Msa0146650 AT2G37450.1 36.301 146 92 1 230 374 129 274 1.25e-26 108
Msa0146650 AT3G28080.9 27.753 227 144 4 143 367 1 209 3.14e-26 105
Msa0146650 AT3G28070.3 27.801 241 146 5 105 343 100 314 6.10e-26 107
Msa0146650 AT4G24980.1 27.052 329 148 8 38 366 3 239 5.60e-23 97.8
Msa0146650 AT4G16620.4 26.481 287 176 5 107 386 1 259 4.09e-22 95.5
Msa0146650 AT4G16620.2 26.481 287 176 5 107 386 1 259 4.09e-22 95.5
Msa0146650 AT3G28130.4 30.712 267 150 10 22 282 13 250 2.63e-21 93.2
Msa0146650 AT3G28100.3 30.153 262 152 7 25 282 17 251 9.87e-21 91.7
Msa0146650 AT3G45870.3 33.333 180 106 5 119 293 22 192 2.32e-19 86.3
Msa0146650 AT3G45870.4 35.762 151 87 3 144 293 4 145 3.17e-19 84.3
Msa0146650 AT4G16620.3 27.897 233 139 4 30 261 20 224 1.83e-18 85.1
Msa0146650 AT3G28130.6 35.542 166 91 5 22 183 13 166 2.61e-18 83.6
Msa0146650 AT3G28100.2 36.646 161 90 4 25 183 17 167 4.15e-18 84.0
Msa0146650 AT3G28080.3 34.911 169 90 5 25 186 17 172 1.33e-13 71.6
Msa0146650 AT3G28080.4 43.038 79 37 1 105 183 8 78 1.16e-12 67.4
Msa0146650 AT3G28080.4 33.784 74 48 1 294 367 120 192 5.79e-11 62.4

Find 112 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGATGTCTTTATCTAAT+TGG 0.160867 1_4:+6358882 Msa0146650:CDS
CCTTCCATTTGCTTATTTCT+TGG 0.164985 1_4:+6357690 Msa0146650:CDS
ACAGTACCAATGATTGATTT+TGG 0.182728 1_4:+6358819 Msa0146650:CDS
TTTCTTTATGGTTTGATTTA+CGG 0.229174 1_4:+6360250 Msa0146650:three_prime_UTR
TAGAATTGGTTTCAAAAGTA+TGG 0.235424 1_4:+6360347 Msa0146650:three_prime_UTR
TATTCTACAATGGCTGATTT+AGG 0.243865 1_4:+6357487 Msa0146650:exon
TATGTTAGTTAATTTCTTTA+TGG 0.244766 1_4:+6360238 Msa0146650:three_prime_UTR
GGTTTCAAAAGTATGGTAAT+TGG 0.245299 1_4:+6360354 Msa0146650:three_prime_UTR
ACTTCCTATACATGTTTCTT+TGG 0.256420 1_4:+6358981 Msa0146650:CDS
TTGCATTTGCAGTACAAATA+TGG 0.283549 1_4:+6359210 Msa0146650:CDS
GCAATTTCTTCTTATTGCTT+TGG 0.291149 1_4:+6359010 Msa0146650:CDS
CTTAAACGGAGTCATCATTT+TGG 0.294261 1_4:+6360414 Msa0146650:three_prime_UTR
CTAATTAACCAACACTTGTT+TGG 0.315906 1_4:+6357388 Msa0146650:five_prime_UTR
ATCATGGCTTCTATTGCTTT+AGG 0.322920 1_4:+6359299 Msa0146650:CDS
GATGCTTTAGCGTGGCTTGC+GGG 0.332227 1_4:-6359964 None:intergenic
CAGAGGAAGTTTAAATTAAT+CGG 0.338959 1_4:-6358175 None:intergenic
CTAACTAACCGCGTATAAAA+TGG 0.340348 1_4:-6359087 None:intergenic
TAGCTAGGCCTCAATTAAAT+TGG 0.356448 1_4:+6357414 Msa0146650:five_prime_UTR
AATCAAGGTTTCTATTTGCT+TGG 0.366777 1_4:+6358446 Msa0146650:CDS
AACATATATATAAAAGCATA+TGG 0.370997 1_4:-6360221 None:intergenic
TCTTAGTAGATTATTTAGAT+TGG 0.388213 1_4:+6360110 Msa0146650:three_prime_UTR
CACACAAGCATGGTACTATA+AGG 0.389716 1_4:-6360055 None:intergenic
ATTGTTTGTCTTGGTCTGCT+TGG 0.391168 1_4:+6358907 Msa0146650:CDS
AAATTTCTCAAGATTAGAAT+TGG 0.393786 1_4:+6360333 Msa0146650:three_prime_UTR
CTTAGTAGATTATTTAGATT+GGG 0.394466 1_4:+6360111 Msa0146650:three_prime_UTR
TTGCAGGGAGTGGTGGCATC+TGG 0.399814 1_4:+6359185 Msa0146650:intron
ATCAAGGTTTCTATTTGCTT+GGG 0.402879 1_4:+6358447 Msa0146650:CDS
GCCCTGCAGTTTGGTTATGC+TGG 0.404103 1_4:+6357577 Msa0146650:CDS
CCACTATTTAAGTGACTACT+TGG 0.407294 1_4:-6358762 None:intergenic
TAATTGGACATTGTTTGTCT+TGG 0.407693 1_4:+6358898 Msa0146650:CDS
GCCATGTTGGCCCTGCAGTT+TGG 0.410120 1_4:+6357568 Msa0146650:CDS
TGGACTATACTTTGTGTTGT+GGG 0.419500 1_4:+6359867 Msa0146650:CDS
CACAAATTGTGACTCTTAAA+CGG 0.421271 1_4:+6360400 Msa0146650:three_prime_UTR
GACGAGCAGGGTACTTCTTA+AGG 0.425673 1_4:-6358950 None:intergenic
ACATGCAGCTGAAATTTCTC+AGG 0.434745 1_4:-6357544 None:intergenic
GCTACAACAAAAGTTTGAAC+AGG 0.438205 1_4:-6359275 None:intergenic
GCAATGATGTTCCTATAGAC+AGG 0.454821 1_4:-6357655 None:intergenic
TTGAAAGAAATGCTCAGGCT+TGG 0.458050 1_4:+6359036 Msa0146650:CDS
ATGGGAACATGTTGTAATAG+TGG 0.458354 1_4:+6360157 Msa0146650:three_prime_UTR
TTGGTTAATTAGCAAAAGAA+AGG 0.460569 1_4:-6357377 None:intergenic
TACAGGATTACAGCAAATCA+AGG 0.469868 1_4:+6358431 Msa0146650:intron
CCCTGCCATTACATTTCTCA+TGG 0.470693 1_4:+6358517 Msa0146650:CDS
TTCAAGAGCTGCACTTAACA+TGG 0.475828 1_4:+6357612 Msa0146650:CDS
ATTGTCCCAAAATCAATCAT+TGG 0.477316 1_4:-6358825 None:intergenic
TTAATTAGTAAAGGTAATAG+TGG 0.480595 1_4:+6360554 Msa0146650:three_prime_UTR
GTTAATTAGCAAAAGAAAGG+TGG 0.482071 1_4:-6357374 None:intergenic
CAAATATGGTGCATTGATAG+AGG 0.486474 1_4:+6359224 Msa0146650:CDS
CCAAGTAGTCACTTAAATAG+TGG 0.486646 1_4:+6358762 Msa0146650:CDS
GTGAGACTGAATCGAAAAGA+TGG 0.488376 1_4:+6358657 Msa0146650:CDS
AGGTTTCTATTTGCTTGGGT+TGG 0.489312 1_4:+6358451 Msa0146650:CDS
GATGGAATTGCTAAAGTAGC+AGG 0.489379 1_4:+6358675 Msa0146650:CDS
CTGGACTATACTTTGTGTTG+TGG 0.492738 1_4:+6359866 Msa0146650:CDS
GAGTCCAAAGAAACATGTAT+AGG 0.500964 1_4:-6358985 None:intergenic
TTCTCATGGCAGTCATACTA+AGG 0.503575 1_4:+6358531 Msa0146650:CDS
TTTAGGAGAAGAGTTCTACT+TGG 0.503735 1_4:+6359316 Msa0146650:CDS
GAAGTGACAGAAAGACGAGC+AGG 0.504587 1_4:-6358963 None:intergenic
GCCATGAGAAATGTAATGGC+AGG 0.506658 1_4:-6358518 None:intergenic
GATAGAACACCACATTCTCT+TGG 0.513393 1_4:-6357521 None:intergenic
ATAGTGGATGTCACTAAAAG+TGG 0.518080 1_4:+6360173 Msa0146650:three_prime_UTR
AGCAAAAGAAAGGTGGGAAG+TGG 0.518685 1_4:-6357367 None:intergenic
TTAATTAGCAAAAGAAAGGT+GGG 0.521416 1_4:-6357373 None:intergenic
AACCAGCATAACCAAACTGC+AGG 0.522465 1_4:-6357579 None:intergenic
CTACTTGGACTATATATAGT+TGG 0.532157 1_4:-6358747 None:intergenic
GAGAAGAGTTCTACTTGGGC+GGG 0.532422 1_4:+6359321 Msa0146650:CDS
ATGTCACTTGGTGATGCAAA+GGG 0.532729 1_4:+6358846 Msa0146650:CDS
GACTAATTTCACAAGGCTCT+AGG 0.533576 1_4:-6360198 None:intergenic
TGTATTGCTGATGCAAAGGT+AGG 0.537203 1_4:-6358485 None:intergenic
CCAAGAAATAAGCAAATGGA+AGG 0.543346 1_4:-6357690 None:intergenic
AGCTAAAACCAAACAAGTGT+TGG 0.546313 1_4:-6357396 None:intergenic
TGATACACTGCAACAAACAC+TGG 0.547318 1_4:-6359251 None:intergenic
TATTAATTTGCAGGGAGTGG+TGG 0.551473 1_4:+6359178 Msa0146650:intron
TCAGTGATTACATTATATCA+AGG 0.554127 1_4:+6358723 Msa0146650:CDS
GTATTGCTGATGCAAAGGTA+GGG 0.556287 1_4:-6358484 None:intergenic
CATCATTATCATGACATGGA+AGG 0.556419 1_4:+6360306 Msa0146650:three_prime_UTR
TTAGGAGAAGAGTTCTACTT+GGG 0.557775 1_4:+6359317 Msa0146650:CDS
GCAGGGTACTTCTTAAGGAC+AGG 0.561869 1_4:-6358945 None:intergenic
AGAGAAGAAATTATTTGCAA+AGG 0.564376 1_4:+6359900 Msa0146650:CDS
TAAAGCAATAGAAGCCATGA+TGG 0.564411 1_4:-6359297 None:intergenic
TCAGCTGCATGTGGCCATGT+TGG 0.564609 1_4:+6357555 Msa0146650:CDS
ACCAAACTGCAGGGCCAACA+TGG 0.565314 1_4:-6357569 None:intergenic
AATGTCACTTGGTGATGCAA+AGG 0.570694 1_4:+6358845 Msa0146650:CDS
GGTGCAGTGTTGATAGTAGC+TGG 0.570883 1_4:+6359847 Msa0146650:CDS
ACATATATATAAAAGCATAT+GGG 0.572868 1_4:-6360220 None:intergenic
TCTGTTGAAGAAGATAGGAA+TGG 0.578628 1_4:-6359997 None:intergenic
CAGCTTCTTCCAAGAGAATG+TGG 0.578874 1_4:+6357512 Msa0146650:CDS
TAATTAGTAAAGGTAATAGT+GGG 0.580653 1_4:+6360555 Msa0146650:three_prime_UTR
TAGTGGATGTCACTAAAAGT+GGG 0.583894 1_4:+6360174 Msa0146650:three_prime_UTR
TCAATTCAGTTATTCTACAA+TGG 0.584317 1_4:+6357477 Msa0146650:exon
ATCATTATCATGACATGGAA+GGG 0.587883 1_4:+6360307 Msa0146650:three_prime_UTR
TGATGCTTTAGCGTGGCTTG+CGG 0.596033 1_4:-6359965 None:intergenic
CAATGATGTTCCTATAGACA+GGG 0.596068 1_4:-6357654 None:intergenic
GACTGCCATGAGAAATGTAA+TGG 0.601131 1_4:-6358522 None:intergenic
GTTCTGTATTGCTGATGCAA+AGG 0.604446 1_4:-6358489 None:intergenic
ATAATGACCTAGATGCATGC+TGG 0.606908 1_4:+6360481 Msa0146650:three_prime_UTR
AGAAATAAGCAAATGGAAGG+AGG 0.607370 1_4:-6357687 None:intergenic
GGAGAAGAGTTCTACTTGGG+CGG 0.607421 1_4:+6359320 Msa0146650:CDS
GTGCAGCTCTTGAAACAACA+TGG 0.618096 1_4:-6357603 None:intergenic
AGGAAGTTTAAATTAATCGG+TGG 0.623492 1_4:-6358172 None:intergenic
TCAAGAGCTGCACTTAACAT+GGG 0.631283 1_4:+6357613 Msa0146650:CDS
GGACTATACTTTGTGTTGTG+GGG 0.631775 1_4:+6359868 Msa0146650:CDS
AAGTGACAGAAAGACGAGCA+GGG 0.633913 1_4:-6358962 None:intergenic
CCATGAGAAATGTAATGGCA+GGG 0.635566 1_4:-6358517 None:intergenic
TGAGAAATTTCAGCTGCATG+TGG 0.640532 1_4:+6357546 Msa0146650:CDS
TATCACAACACACACAAGCA+TGG 0.644681 1_4:-6360065 None:intergenic
TAGTCATCATTATCATGACA+TGG 0.647380 1_4:+6360302 Msa0146650:three_prime_UTR
CATATGGGACTAATTTCACA+AGG 0.653189 1_4:-6360205 None:intergenic
CATGCAGCTGAAATTTCTCA+GGG 0.657899 1_4:-6357543 None:intergenic
TATTGCTGATGCAAAGGTAG+GGG 0.668908 1_4:-6358483 None:intergenic
ATATGGTGCATTGATAGAGG+AGG 0.677817 1_4:+6359227 Msa0146650:CDS
ACCAGCATAACCAAACTGCA+GGG 0.678569 1_4:-6357578 None:intergenic
GAGTGAGTGATGCTTTAGCG+TGG 0.695699 1_4:-6359972 None:intergenic
AGTGGATGTCACTAAAAGTG+GGG 0.699194 1_4:+6360175 Msa0146650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTTTATAAATTAA+AGG + chr1_4:6358311-6358330 Msa0146650:intron 0.0%
!! TATTTAATTATATTAAATTA+AGG + chr1_4:6358378-6358397 Msa0146650:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTA+TGG + chr1_4:6360138-6360157 Msa0146650:three_prime_UTR 0.0%
!!! TTTTTTTTTTTTTTTTTTAT+GGG + chr1_4:6360139-6360158 Msa0146650:three_prime_UTR 0.0%
!! ATAAATATATAAATGTTAAG+AGG - chr1_4:6357856-6357875 None:intergenic 10.0%
!!! CTTAGTTAATAATTTTTTAT+GGG - chr1_4:6357893-6357912 None:intergenic 10.0%
!!! ACTTAGTTAATAATTTTTTA+TGG - chr1_4:6357894-6357913 None:intergenic 10.0%
!!! TAATAACCTTTTATAAAAAT+GGG + chr1_4:6357913-6357932 Msa0146650:intron 10.0%
!!! TTTTTTTTTTATTAATTTGC+AGG + chr1_4:6359169-6359188 Msa0146650:intron 10.0%
!!! TTTTTTTTTATTAATTTGCA+GGG + chr1_4:6359170-6359189 Msa0146650:intron 10.0%
!!! TTTTAGTAATTAATTAGTAA+AGG + chr1_4:6360545-6360564 Msa0146650:three_prime_UTR 10.0%
!!! GTAATAACCTTTTATAAAAA+TGG + chr1_4:6357912-6357931 Msa0146650:intron 15.0%
!!! TGAAAGATATGTAATTTTAT+TGG + chr1_4:6358000-6358019 Msa0146650:intron 15.0%
!!! GAAAGATATGTAATTTTATT+GGG + chr1_4:6358001-6358020 Msa0146650:intron 15.0%
!! ATAATTCAGCATATTATTAA+AGG - chr1_4:6358412-6358431 None:intergenic 15.0%
!! TATCATAAACATTTGAATTA+AGG - chr1_4:6359370-6359389 None:intergenic 15.0%
!!! TTTGATTGTGATTTTATTTT+TGG + chr1_4:6359564-6359583 Msa0146650:intron 15.0%
!! TGAATAAAGTTAAATCAAAA+GGG - chr1_4:6359793-6359812 None:intergenic 15.0%
!! ATGAATAAAGTTAAATCAAA+AGG - chr1_4:6359794-6359813 None:intergenic 15.0%
!!! ACATATATATAAAAGCATAT+GGG - chr1_4:6360223-6360242 None:intergenic 15.0%
!!! AACATATATATAAAAGCATA+TGG - chr1_4:6360224-6360243 None:intergenic 15.0%
!! TATGTTAGTTAATTTCTTTA+TGG + chr1_4:6360238-6360257 Msa0146650:three_prime_UTR 15.0%
!!! AATTTTGACCAATTTAATTG+AGG - chr1_4:6357425-6357444 None:intergenic 20.0%
!! GTATAATGTACAAAATTTCA+TGG - chr1_4:6357768-6357787 None:intergenic 20.0%
!!! GAAATTTTGTACATTATACA+TGG + chr1_4:6357769-6357788 Msa0146650:intron 20.0%
!! CCAATAAAAAAAAAAAACTG+TGG - chr1_4:6357805-6357824 None:intergenic 20.0%
!!! CCACAGTTTTTTTTTTTTAT+TGG + chr1_4:6357802-6357821 Msa0146650:intron 20.0%
!! TTAAGAGAATATGCTAATTA+AGG - chr1_4:6357831-6357850 None:intergenic 20.0%
!! TTAATTAGCATATTCTCTTA+AGG + chr1_4:6357830-6357849 Msa0146650:intron 20.0%
!! TATTGTCAAAAGTTTCATAT+AGG + chr1_4:6357969-6357988 Msa0146650:intron 20.0%
!!! GCATATTATTAAAGGTATAA+AGG - chr1_4:6358404-6358423 None:intergenic 20.0%
!! AATAATATGCTGAATTATAC+AGG + chr1_4:6358414-6358433 Msa0146650:intron 20.0%
!!! ATATGCAAAATTTTATCAAC+AGG + chr1_4:6358625-6358644 Msa0146650:intron 20.0%
!! ATCATTATACATAAGATACA+TGG - chr1_4:6359457-6359476 None:intergenic 20.0%
!!! AAGTTTTTGTTACCTAATTT+AGG + chr1_4:6359656-6359675 Msa0146650:intron 20.0%
!!! AGTTTTTGTTACCTAATTTA+GGG + chr1_4:6359657-6359676 Msa0146650:intron 20.0%
!!! TAATATCCCTTTTATATTAC+AGG + chr1_4:6359818-6359837 Msa0146650:intron 20.0%
!! AATGATCCTGTAATATAAAA+GGG - chr1_4:6359827-6359846 None:intergenic 20.0%
!! TCTTAGTAGATTATTTAGAT+TGG + chr1_4:6360110-6360129 Msa0146650:three_prime_UTR 20.0%
!! CTTAGTAGATTATTTAGATT+GGG + chr1_4:6360111-6360130 Msa0146650:three_prime_UTR 20.0%
!!! TTTCTTTATGGTTTGATTTA+CGG + chr1_4:6360250-6360269 Msa0146650:three_prime_UTR 20.0%
!! AAATTTCTCAAGATTAGAAT+TGG + chr1_4:6360333-6360352 Msa0146650:three_prime_UTR 20.0%
!! TTAATTAGTAAAGGTAATAG+TGG + chr1_4:6360554-6360573 Msa0146650:three_prime_UTR 20.0%
!! TAATTAGTAAAGGTAATAGT+GGG + chr1_4:6360555-6360574 Msa0146650:three_prime_UTR 20.0%
! TTAATTAGCAAAAGAAAGGT+GGG - chr1_4:6357376-6357395 None:intergenic 25.0%
! TTGGTTAATTAGCAAAAGAA+AGG - chr1_4:6357380-6357399 None:intergenic 25.0%
! TCAATTCAGTTATTCTACAA+TGG + chr1_4:6357477-6357496 Msa0146650:exon 25.0%
!! TTTTCCAAGAAATAAGCAAA+TGG - chr1_4:6357697-6357716 None:intergenic 25.0%
! AATGAAATTGTTAAGAGGAA+TGG - chr1_4:6357727-6357746 None:intergenic 25.0%
! GTGTTAATGAAATTGTTAAG+AGG - chr1_4:6357732-6357751 None:intergenic 25.0%
!! TATTTAGTTCCCGTTAAAAT+GGG - chr1_4:6357951-6357970 None:intergenic 25.0%
!! ATATTTAGTTCCCGTTAAAA+TGG - chr1_4:6357952-6357971 None:intergenic 25.0%
! CAGAGGAAGTTTAAATTAAT+CGG - chr1_4:6358178-6358197 None:intergenic 25.0%
!! GGAACAATATTTTGTGTAAT+TGG + chr1_4:6358696-6358715 Msa0146650:CDS 25.0%
! TCAGTGATTACATTATATCA+AGG + chr1_4:6358723-6358742 Msa0146650:CDS 25.0%
! TAATTTAAACCTAATAGTCG+TGG - chr1_4:6359113-6359132 None:intergenic 25.0%
! TTGAATTAAGGATCGTAATT+AGG - chr1_4:6359358-6359377 None:intergenic 25.0%
! GTAACAAAAACTTGATCATA+GGG - chr1_4:6359649-6359668 None:intergenic 25.0%
! TTGAAGCAAAAAATCATCAT+AGG + chr1_4:6359696-6359715 Msa0146650:intron 25.0%
! TAGGATATACTACTATTGAA+TGG + chr1_4:6359715-6359734 Msa0146650:intron 25.0%
! CAATGATCCTGTAATATAAA+AGG - chr1_4:6359828-6359847 None:intergenic 25.0%
!! CTTTTATATTACAGGATCAT+TGG + chr1_4:6359826-6359845 Msa0146650:intron 25.0%
! AGAGAAGAAATTATTTGCAA+AGG + chr1_4:6359900-6359919 Msa0146650:CDS 25.0%
!! TAGAATTGGTTTCAAAAGTA+TGG + chr1_4:6360347-6360366 Msa0146650:three_prime_UTR 25.0%
GTTAATTAGCAAAAGAAAGG+TGG - chr1_4:6357377-6357396 None:intergenic 30.0%
CTAATTAACCAACACTTGTT+TGG + chr1_4:6357388-6357407 Msa0146650:five_prime_UTR 30.0%
! TATTCTACAATGGCTGATTT+AGG + chr1_4:6357487-6357506 Msa0146650:exon 30.0%
GTACAAAATTTCATGGATGA+GGG - chr1_4:6357761-6357780 None:intergenic 30.0%
TGTACAAAATTTCATGGATG+AGG - chr1_4:6357762-6357781 None:intergenic 30.0%
!! AACGTGCCCATTTTTATAAA+AGG - chr1_4:6357922-6357941 None:intergenic 30.0%
!!! CGTTTTAGTTCCCATTTTAA+CGG + chr1_4:6357938-6357957 Msa0146650:intron 30.0%
!!! GTTTTAGTTCCCATTTTAAC+GGG + chr1_4:6357939-6357958 Msa0146650:intron 30.0%
! GTTTCTTTTCCTTTTTGTTC+AGG + chr1_4:6358140-6358159 Msa0146650:intron 30.0%
AGGAAGTTTAAATTAATCGG+TGG - chr1_4:6358175-6358194 None:intergenic 30.0%
!!! TTCTTTTTTCTCGCACTTAT+TGG + chr1_4:6358202-6358221 Msa0146650:CDS 30.0%
!!! TCTTTTTTCTCGCACTTATT+GGG + chr1_4:6358203-6358222 Msa0146650:CDS 30.0%
AATCAAGGTTTCTATTTGCT+TGG + chr1_4:6358446-6358465 Msa0146650:CDS 30.0%
ATCAAGGTTTCTATTTGCTT+GGG + chr1_4:6358447-6358466 Msa0146650:CDS 30.0%
CTACTTGGACTATATATAGT+TGG - chr1_4:6358750-6358769 None:intergenic 30.0%
!! ACAGTACCAATGATTGATTT+TGG + chr1_4:6358819-6358838 Msa0146650:CDS 30.0%
!! CAGTACCAATGATTGATTTT+GGG + chr1_4:6358820-6358839 Msa0146650:CDS 30.0%
ATTGTCCCAAAATCAATCAT+TGG - chr1_4:6358828-6358847 None:intergenic 30.0%
CTTGGATGTCTTTATCTAAT+TGG + chr1_4:6358882-6358901 Msa0146650:CDS 30.0%
TAATTGGACATTGTTTGTCT+TGG + chr1_4:6358898-6358917 Msa0146650:CDS 30.0%
ACTTCCTATACATGTTTCTT+TGG + chr1_4:6358981-6359000 Msa0146650:CDS 30.0%
GCAATTTCTTCTTATTGCTT+TGG + chr1_4:6359010-6359029 Msa0146650:CDS 30.0%
!!! TTTTATTAATTTGCAGGGAG+TGG + chr1_4:6359175-6359194 Msa0146650:intron 30.0%
TTGCATTTGCAGTACAAATA+TGG + chr1_4:6359210-6359229 Msa0146650:CDS 30.0%
TAAGGATCGTAATTAGGATT+AGG - chr1_4:6359352-6359371 None:intergenic 30.0%
TAATTGCTTTGTGAGTGTTT+AGG - chr1_4:6359405-6359424 None:intergenic 30.0%
AATGACCTAAAGTGAGATAA+AGG + chr1_4:6359488-6359507 Msa0146650:intron 30.0%
ATGACCTAAAGTGAGATAAA+GGG + chr1_4:6359489-6359508 Msa0146650:intron 30.0%
AATACCCTTTATCTCACTTT+AGG - chr1_4:6359496-6359515 None:intergenic 30.0%
GGTAACAAAAACTTGATCAT+AGG - chr1_4:6359650-6359669 None:intergenic 30.0%
! CATTTTCTGTTGAAGAAGAT+AGG - chr1_4:6360005-6360024 None:intergenic 30.0%
TAGTCATCATTATCATGACA+TGG + chr1_4:6360302-6360321 Msa0146650:three_prime_UTR 30.0%
ATCATTATCATGACATGGAA+GGG + chr1_4:6360307-6360326 Msa0146650:three_prime_UTR 30.0%
! GGTTTCAAAAGTATGGTAAT+TGG + chr1_4:6360354-6360373 Msa0146650:three_prime_UTR 30.0%
CACAAATTGTGACTCTTAAA+CGG + chr1_4:6360400-6360419 Msa0146650:three_prime_UTR 30.0%
! TAAAAGAGAAAGTCTTGTGT+AGG + chr1_4:6360504-6360523 Msa0146650:intron 30.0%
AGCTAAAACCAAACAAGTGT+TGG - chr1_4:6357399-6357418 None:intergenic 35.0%
!!! ACACTTGTTTGGTTTTAGCT+AGG + chr1_4:6357399-6357418 Msa0146650:five_prime_UTR 35.0%
TAGCTAGGCCTCAATTAAAT+TGG + chr1_4:6357414-6357433 Msa0146650:five_prime_UTR 35.0%
!! AACTTGTTTTCCCTGTCTAT+AGG + chr1_4:6357644-6357663 Msa0146650:CDS 35.0%
CAATGATGTTCCTATAGACA+GGG - chr1_4:6357657-6357676 None:intergenic 35.0%
AGAAATAAGCAAATGGAAGG+AGG - chr1_4:6357690-6357709 None:intergenic 35.0%
CCAAGAAATAAGCAAATGGA+AGG - chr1_4:6357693-6357712 None:intergenic 35.0%
! CCTTCCATTTGCTTATTTCT+TGG + chr1_4:6357690-6357709 Msa0146650:CDS 35.0%
! CTTTTCCTTTTTGTTCAGGA+AGG + chr1_4:6358144-6358163 Msa0146650:intron 35.0%
TAAGTGCGAGAAAAAAGAAC+TGG - chr1_4:6358201-6358220 None:intergenic 35.0%
TACAGGATTACAGCAAATCA+AGG + chr1_4:6358431-6358450 Msa0146650:intron 35.0%
CCACTATTTAAGTGACTACT+TGG - chr1_4:6358765-6358784 None:intergenic 35.0%
CCAAGTAGTCACTTAAATAG+TGG + chr1_4:6358762-6358781 Msa0146650:CDS 35.0%
GTGATGCAAAGGGAAAAAAT+TGG + chr1_4:6358856-6358875 Msa0146650:CDS 35.0%
AAGGGAAAAAATTGGACACT+TGG + chr1_4:6358864-6358883 Msa0146650:CDS 35.0%
GAGTCCAAAGAAACATGTAT+AGG - chr1_4:6358988-6359007 None:intergenic 35.0%
!! GGTTTTTGAAAGAAATGCTC+AGG + chr1_4:6359031-6359050 Msa0146650:CDS 35.0%
! AGCTTTCACCATTTTATACG+CGG + chr1_4:6359079-6359098 Msa0146650:CDS 35.0%
CTAACTAACCGCGTATAAAA+TGG - chr1_4:6359090-6359109 None:intergenic 35.0%
! CAAATATGGTGCATTGATAG+AGG + chr1_4:6359224-6359243 Msa0146650:CDS 35.0%
GCTACAACAAAAGTTTGAAC+AGG - chr1_4:6359278-6359297 None:intergenic 35.0%
!! AACTTTTGTTGTAGCCATCA+TGG + chr1_4:6359283-6359302 Msa0146650:CDS 35.0%
TAAAGCAATAGAAGCCATGA+TGG - chr1_4:6359300-6359319 None:intergenic 35.0%
ATCATGGCTTCTATTGCTTT+AGG + chr1_4:6359299-6359318 Msa0146650:CDS 35.0%
TTTAGGAGAAGAGTTCTACT+TGG + chr1_4:6359316-6359335 Msa0146650:CDS 35.0%
TTAGGAGAAGAGTTCTACTT+GGG + chr1_4:6359317-6359336 Msa0146650:CDS 35.0%
TATCTCACTTTAGGTCATTC+CGG - chr1_4:6359487-6359506 None:intergenic 35.0%
CTAAGTTCTCACCCTAAATT+AGG - chr1_4:6359671-6359690 None:intergenic 35.0%
TGGACTATACTTTGTGTTGT+GGG + chr1_4:6359867-6359886 Msa0146650:CDS 35.0%
TCTGTTGAAGAAGATAGGAA+TGG - chr1_4:6360000-6360019 None:intergenic 35.0%
ATGGGAACATGTTGTAATAG+TGG + chr1_4:6360157-6360176 Msa0146650:three_prime_UTR 35.0%
!! ATAGTGGATGTCACTAAAAG+TGG + chr1_4:6360173-6360192 Msa0146650:three_prime_UTR 35.0%
! TAGTGGATGTCACTAAAAGT+GGG + chr1_4:6360174-6360193 Msa0146650:three_prime_UTR 35.0%
CATATGGGACTAATTTCACA+AGG - chr1_4:6360208-6360227 None:intergenic 35.0%
CATCATTATCATGACATGGA+AGG + chr1_4:6360306-6360325 Msa0146650:three_prime_UTR 35.0%
! CTTAAACGGAGTCATCATTT+TGG + chr1_4:6360414-6360433 Msa0146650:three_prime_UTR 35.0%
GATAGAACACCACATTCTCT+TGG - chr1_4:6357524-6357543 None:intergenic 40.0%
CATGCAGCTGAAATTTCTCA+GGG - chr1_4:6357546-6357565 None:intergenic 40.0%
ACATGCAGCTGAAATTTCTC+AGG - chr1_4:6357547-6357566 None:intergenic 40.0%
TGAGAAATTTCAGCTGCATG+TGG + chr1_4:6357546-6357565 Msa0146650:CDS 40.0%
TTCAAGAGCTGCACTTAACA+TGG + chr1_4:6357612-6357631 Msa0146650:CDS 40.0%
TCAAGAGCTGCACTTAACAT+GGG + chr1_4:6357613-6357632 Msa0146650:CDS 40.0%
GCAATGATGTTCCTATAGAC+AGG - chr1_4:6357658-6357677 None:intergenic 40.0%
TCTGTCCTTCCTGAACAAAA+AGG - chr1_4:6358152-6358171 None:intergenic 40.0%
AGGTTTCTATTTGCTTGGGT+TGG + chr1_4:6358451-6358470 Msa0146650:CDS 40.0%
TATTGCTGATGCAAAGGTAG+GGG - chr1_4:6358486-6358505 None:intergenic 40.0%
GTATTGCTGATGCAAAGGTA+GGG - chr1_4:6358487-6358506 None:intergenic 40.0%
TGTATTGCTGATGCAAAGGT+AGG - chr1_4:6358488-6358507 None:intergenic 40.0%
GTTCTGTATTGCTGATGCAA+AGG - chr1_4:6358492-6358511 None:intergenic 40.0%
CCATGAGAAATGTAATGGCA+GGG - chr1_4:6358520-6358539 None:intergenic 40.0%
GACTGCCATGAGAAATGTAA+TGG - chr1_4:6358525-6358544 None:intergenic 40.0%
TTCTCATGGCAGTCATACTA+AGG + chr1_4:6358531-6358550 Msa0146650:CDS 40.0%
GTGAGACTGAATCGAAAAGA+TGG + chr1_4:6358657-6358676 Msa0146650:CDS 40.0%
GATGGAATTGCTAAAGTAGC+AGG + chr1_4:6358675-6358694 Msa0146650:CDS 40.0%
!!! GATTTTGGGACAATGTCACT+TGG + chr1_4:6358834-6358853 Msa0146650:CDS 40.0%
!! AATGTCACTTGGTGATGCAA+AGG + chr1_4:6358845-6358864 Msa0146650:CDS 40.0%
!! ATGTCACTTGGTGATGCAAA+GGG + chr1_4:6358846-6358865 Msa0146650:CDS 40.0%
ATTGTTTGTCTTGGTCTGCT+TGG + chr1_4:6358907-6358926 Msa0146650:CDS 40.0%
TTGAAAGAAATGCTCAGGCT+TGG + chr1_4:6359036-6359055 Msa0146650:CDS 40.0%
GTTAGTTAGCCACGACTATT+AGG + chr1_4:6359101-6359120 Msa0146650:intron 40.0%
!! TATTAATTTGCAGGGAGTGG+TGG + chr1_4:6359178-6359197 Msa0146650:intron 40.0%
! ATATGGTGCATTGATAGAGG+AGG + chr1_4:6359227-6359246 Msa0146650:CDS 40.0%
TGATACACTGCAACAAACAC+TGG - chr1_4:6359254-6359273 None:intergenic 40.0%
ATGTATAATGATACCGCCTC+CGG + chr1_4:6359465-6359484 Msa0146650:intron 40.0%
CTGGACTATACTTTGTGTTG+TGG + chr1_4:6359866-6359885 Msa0146650:CDS 40.0%
GGACTATACTTTGTGTTGTG+GGG + chr1_4:6359868-6359887 Msa0146650:CDS 40.0%
CACACAAGCATGGTACTATA+AGG - chr1_4:6360058-6360077 None:intergenic 40.0%
TATCACAACACACACAAGCA+TGG - chr1_4:6360068-6360087 None:intergenic 40.0%
AGTGGATGTCACTAAAAGTG+GGG + chr1_4:6360175-6360194 Msa0146650:three_prime_UTR 40.0%
GACTAATTTCACAAGGCTCT+AGG - chr1_4:6360201-6360220 None:intergenic 40.0%
!! AACGGAGTCATCATTTTGGT+CGG + chr1_4:6360418-6360437 Msa0146650:three_prime_UTR 40.0%
ATAATGACCTAGATGCATGC+TGG + chr1_4:6360481-6360500 Msa0146650:three_prime_UTR 40.0%
! TCTTTTACCAGCATGCATCT+AGG - chr1_4:6360491-6360510 None:intergenic 40.0%
AGCAAAAGAAAGGTGGGAAG+TGG - chr1_4:6357370-6357389 None:intergenic 45.0%
CAGCTTCTTCCAAGAGAATG+TGG + chr1_4:6357512-6357531 Msa0146650:CDS 45.0%
ACCAGCATAACCAAACTGCA+GGG - chr1_4:6357581-6357600 None:intergenic 45.0%
AACCAGCATAACCAAACTGC+AGG - chr1_4:6357582-6357601 None:intergenic 45.0%
GTGCAGCTCTTGAAACAACA+TGG - chr1_4:6357606-6357625 None:intergenic 45.0%
CGAGAAAAAAGAACTGGCAG+AGG - chr1_4:6358195-6358214 None:intergenic 45.0%
CCCTGCCATTACATTTCTCA+TGG + chr1_4:6358517-6358536 Msa0146650:CDS 45.0%
GCCATGAGAAATGTAATGGC+AGG - chr1_4:6358521-6358540 None:intergenic 45.0%
AAGTGACAGAAAGACGAGCA+GGG - chr1_4:6358965-6358984 None:intergenic 45.0%
! CAGGCTTGGATTTTTCACTC+TGG + chr1_4:6359050-6359069 Msa0146650:CDS 45.0%
! GCTTGGATTTTTCACTCTGG+TGG + chr1_4:6359053-6359072 Msa0146650:CDS 45.0%
!!! TAATTTTAACAATTTATATA+GGG - chr1_4:6358044-6358063 None:intergenic 5.0%
!!! ATAATTTTAACAATTTATAT+AGG - chr1_4:6358045-6358064 None:intergenic 5.0%
! GCAGGGTACTTCTTAAGGAC+AGG - chr1_4:6358948-6358967 None:intergenic 50.0%
! GACGAGCAGGGTACTTCTTA+AGG - chr1_4:6358953-6358972 None:intergenic 50.0%
GAAGTGACAGAAAGACGAGC+AGG - chr1_4:6358966-6358985 None:intergenic 50.0%
GGAGAAGAGTTCTACTTGGG+CGG + chr1_4:6359320-6359339 Msa0146650:CDS 50.0%
GAGAAGAGTTCTACTTGGGC+GGG + chr1_4:6359321-6359340 Msa0146650:CDS 50.0%
ACTTTAGGTCATTCCGGAGG+CGG - chr1_4:6359481-6359500 None:intergenic 50.0%
CTCACTTTAGGTCATTCCGG+AGG - chr1_4:6359484-6359503 None:intergenic 50.0%
!! GGTGCAGTGTTGATAGTAGC+TGG + chr1_4:6359847-6359866 Msa0146650:CDS 50.0%
TGATGCTTTAGCGTGGCTTG+CGG - chr1_4:6359968-6359987 None:intergenic 50.0%
GAGTGAGTGATGCTTTAGCG+TGG - chr1_4:6359975-6359994 None:intergenic 50.0%
TCAGCTGCATGTGGCCATGT+TGG + chr1_4:6357555-6357574 Msa0146650:CDS 55.0%
ACCAAACTGCAGGGCCAACA+TGG - chr1_4:6357572-6357591 None:intergenic 55.0%
GCCCTGCAGTTTGGTTATGC+TGG + chr1_4:6357577-6357596 Msa0146650:CDS 55.0%
! GATGCTTTAGCGTGGCTTGC+GGG - chr1_4:6359967-6359986 None:intergenic 55.0%
GCCATGTTGGCCCTGCAGTT+TGG + chr1_4:6357568-6357587 Msa0146650:CDS 60.0%
TTGCAGGGAGTGGTGGCATC+TGG + chr1_4:6359185-6359204 Msa0146650:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 6357366 6360661 6357366 ID=Msa0146650;Name=Msa0146650
chr1_4 mRNA 6357366 6360661 6357366 ID=Msa0146650-mRNA-1;Parent=Msa0146650;Name=Msa0146650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|0.83|0.85|1|0.66|0.57|7|609|406
chr1_4 exon 6357366 6357716 6357366 ID=Msa0146650-mRNA-1:exon:2775;Parent=Msa0146650-mRNA-1
chr1_4 exon 6358162 6358224 6358162 ID=Msa0146650-mRNA-1:exon:2776;Parent=Msa0146650-mRNA-1
chr1_4 exon 6358436 6358576 6358436 ID=Msa0146650-mRNA-1:exon:2777;Parent=Msa0146650-mRNA-1
chr1_4 exon 6358647 6359100 6358647 ID=Msa0146650-mRNA-1:exon:2778;Parent=Msa0146650-mRNA-1
chr1_4 exon 6359191 6359342 6359191 ID=Msa0146650-mRNA-1:exon:2779;Parent=Msa0146650-mRNA-1
chr1_4 exon 6359840 6360502 6359840 ID=Msa0146650-mRNA-1:exon:2780;Parent=Msa0146650-mRNA-1
chr1_4 exon 6360526 6360661 6360526 ID=Msa0146650-mRNA-1:exon:2781;Parent=Msa0146650-mRNA-1
chr1_4 five_prime_UTR 6357366 6357495 6357366 ID=Msa0146650-mRNA-1:five_prime_utr;Parent=Msa0146650-mRNA-1
chr1_4 CDS 6357496 6357716 6357496 ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4 CDS 6358162 6358224 6358162 ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4 CDS 6358436 6358576 6358436 ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4 CDS 6358647 6359100 6358647 ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4 CDS 6359191 6359342 6359191 ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4 CDS 6359840 6360029 6359840 ID=Msa0146650-mRNA-1:cds;Parent=Msa0146650-mRNA-1
chr1_4 three_prime_UTR 6360030 6360502 6360030 ID=Msa0146650-mRNA-1:three_prime_utr;Parent=Msa0146650-mRNA-1
chr1_4 three_prime_UTR 6360526 6360661 6360526 ID=Msa0146650-mRNA-1:three_prime_utr;Parent=Msa0146650-mRNA-1
Gene Sequence

>Msa0146650

ATGGCTGATTTAGGTTCAGCTTCTTCCAAGAGAATGTGGTGTTCTATCCCTGAGAAATTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTCCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTATTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGCAAGTAAAAATATTTCATATTATGATAGAGCAAGTGAGACTGAATCGAAAAGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGTGCATCAGTGATTACATTATATCAAGGACCAACTATATATAGTCCAAGTAGTCACTTAAATAGTGGCACAAGCACAACAATAATAACAGAAGTAACAACAACAGTACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTACCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTCTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGTGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGTTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>Msa0146650

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRQVKIFHIMIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSSHLNSGTSTTIITEVTTTVPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*